Documentation/4.8/Modules

For the latest Slicer documentation, visit the read-the-docs.

Modules by category

46 categories:

• Astronomy
• Cardiac
• Cardiac MRI Toolkit
• Chest Imaging Platform
  • Toolkit
    • Particles
    • Processing
    • Quantification
    • Registration
    • Segmentation
    • Utils
• CIP
• Converters
• Developer Tools
  • DICOM Plugins
  • Editor Extensions
  • Matlab
  • Segment Editor Extensions
  • Utils
• Diffusion
  • Diffusion Data Conversion
  • Diffusion Tensor Images
  • Diffusion Weighted Images
  • Import and Export
  • Process
  • Quantify
  • Tractography
    • Region-based
  • Utilities
• Editor Effects
• EditorEffect
• Endoscopy
• Examples
• Exporter
• Filter
• Filtering
  • Arithmetic
  • Denoising
  • Morphology
• IGT
• Informatics
  • Converters
• Legacy
  • Converters
  • Filtering
  • Registration
  • Work in Progress
    • Diffusion Tensor
      • Test
• Libraries
• Machine Learning
• Margin Calculator
• Mesh Generation
• MeshGeneration
• Microscopy
• MultiVolume Support
• Pathology
• Perk Tutor
• Plastimatch
  • Registration
  • Utilities
• Quantification
  • ChangeQuantification
• Radiology
• Radiotherapy
• Registration
  • CMF Registration
    • Voxelbase Registration
  • Label Registration
  • Specialized
• Segmentation
  • Specialized
• Sequences
• Slicelets
• SlicerProstate
• Surface Models
• TestCases
• Testing
  • IGT Tests
  • SlicerRT Tests
  • TestCases
• Ultrasound
• Uncategorized
• Utilities
  • BRAINS
• Vascular Modeling Toolkit
• Web System Tools
• Wizards
• XNATSlicer

Astronomy

• AstroVolume (loadable, bundled in SlicerAstro extension)
• AstroSmoothing (loadable, bundled in SlicerAstro extension)
• AstroSampleData (scripted, bundled in SlicerAstro extension)
• AstroModeling (loadable, bundled in SlicerAstro extension)
• AstroWelcome (loadable, bundled in SlicerAstro extension)
• SlicerAstroDataProbe (scripted, bundled in SlicerAstro extension)

Cardiac

• Philips4dUsDicomPatcher (scripted, bundled in SlicerHeart extension)
• ValveView (scripted, bundled in SlicerHeart extension)

Cardiac MRI Toolkit

• CMRToolkitPVAntrumCut (cli, bundled in Cardiac_MRI_Toolkit extension)
• CMRToolkitBooleanREMOVEFilter (cli, bundled in Cardiac_MRI_Toolkit extension)
• LASegmentationWorkflow (scripted, bundled in Cardiac_MRI_Toolkit extension)
• CMRToolkitRegistrationBRAINSFit (scripted, bundled in Cardiac_MRI_Toolkit extension)
• CMRToolkitAutomaticLeftAtrialScar (cli, bundled in Cardiac_MRI_Toolkit extension)
• CMRToolkitConnectedThresholdFilter (cli, bundled in Cardiac_MRI_Toolkit extension)
• CMRToolkitWizard (scripted, bundled in Cardiac_MRI_Toolkit extension)
• CMRToolkitIsolatedConnectedFilter (cli, bundled in Cardiac_MRI_Toolkit extension)
• CMRToolkitInhomogeneityCorrection (cli, bundled in Cardiac_MRI_Toolkit extension)
• CMRToolkitAxialDilate (cli, bundled in Cardiac_MRI_Toolkit extension)
• ScarVisualization (scripted, bundled in Cardiac_MRI_Toolkit extension)
• CMRToolkitRegistration (scripted, bundled in Cardiac_MRI_Toolkit extension)
• CMRToolkitLASegmentationGraphCuts (cli, bundled in Cardiac_MRI_Toolkit extension)

Chest Imaging Platform

• CIP_MIPViewer (scripted, bundled in Chest_Imaging_Platform extension)
• CIP_BodyComposition (scripted, bundled in Chest_Imaging_Platform extension)
• CIP_InteractiveLobeSegmentation (scripted, bundled in Chest_Imaging_Platform extension)
• CIP_TracheaStentPlanning (scripted, bundled in Chest_Imaging_Platform extension)
• CIP_LesionModel (scripted, bundled in Chest_Imaging_Platform extension)
• AirwayInspector (loadable, bundled in Chest_Imaging_Platform extension)
• CIP_PAARatio (scripted, bundled in Chest_Imaging_Platform extension)
• CIP_CalciumScoring (scripted, bundled in Chest_Imaging_Platform extension)
• CIP_ParenchymaAnalysis (scripted, bundled in Chest_Imaging_Platform extension)
• CIP_ParenchymaSubtypeTraining (scripted, bundled in Chest_Imaging_Platform extension)
• CIP_PointsLabelling (scripted, bundled in Chest_Imaging_Platform extension)

Toolkit

Particles

• ExtractParticlesFromChestRegionChestType (cli, bundled in Chest_Imaging_Platform extension)
• FilterVesselParticleData (cli, bundled in Chest_Imaging_Platform extension)
• RemoveParticlesFromParticlesDataSet (cli, bundled in Chest_Imaging_Platform extension)
• PerturbParticles (cli, bundled in Chest_Imaging_Platform extension)
• MergeParticleDataSets (cli, bundled in Chest_Imaging_Platform extension)
• FilterAirwayParticleData (cli, bundled in Chest_Imaging_Platform extension)
• FitLobeSurfaceModelsToParticleData (cli, bundled in Chest_Imaging_Platform extension)
• ClassifyFissureParticles (cli, bundled in Chest_Imaging_Platform extension)
• GenerateStenciledLabelMapFromParticles (cli, bundled in Chest_Imaging_Platform extension)
• FilterFissureParticleData (cli, bundled in Chest_Imaging_Platform extension)

Processing

• ResampleLabelMap (cli, bundled in Chest_Imaging_Platform extension)
• RescaleLabelMap (cli, bundled in Chest_Imaging_Platform extension)
• GenerateMedianFilteredImage (cli, bundled in Chest_Imaging_Platform extension)
• LabelMapFromRegionAndTypePoints (cli, bundled in Chest_Imaging_Platform extension)
• CropLung (cli, bundled in Chest_Imaging_Platform extension)
• GenerateNLMFilteredImage (cli, bundled in Chest_Imaging_Platform extension)
• RemoveChestTypeFromLabelMapUsingParticles (cli, bundled in Chest_Imaging_Platform extension)
• GenerateAtlasConvexHull (cli, bundled in Chest_Imaging_Platform extension)
• RemapLabelMap (cli, bundled in Chest_Imaging_Platform extension)
• ComputeFissureFeatureVectors (cli, bundled in Chest_Imaging_Platform extension)
• GenerateLobeSurfaceModels (cli, bundled in Chest_Imaging_Platform extension)
• FilterConnectedComponents (cli, bundled in Chest_Imaging_Platform extension)
• ExtractChestLabelMap (cli, bundled in Chest_Imaging_Platform extension)
• PerformMorphological (cli, bundled in Chest_Imaging_Platform extension)
• ExtractFissureBoundaryFromLobeMap (cli, bundled in Chest_Imaging_Platform extension)
• EnhanceFissuresInImage (cli, bundled in Chest_Imaging_Platform extension)
• GraphCutsOptimization (cli, bundled in Chest_Imaging_Platform extension)
• GenerateDistanceMapFromLabelMap (cli, bundled in Chest_Imaging_Platform extension)
• ResampleCT (cli, bundled in Chest_Imaging_Platform extension)
• ComputeFeatureStrength (cli, bundled in Chest_Imaging_Platform extension)
• ComputeDistanceMap (cli, bundled in Chest_Imaging_Platform extension)
• QualityControl (cli, bundled in Chest_Imaging_Platform extension)
• GenerateImageSubVolumes (cli, bundled in Chest_Imaging_Platform extension)

Quantification

• EvaluateLungLobeSegmentationResults (cli, bundled in Chest_Imaging_Platform extension)
• GetTransformationKappa (cli, bundled in Chest_Imaging_Platform extension)
• ReadWriteImageData (cli, bundled in Chest_Imaging_Platform extension)
• ComputeIntensityStatistics (cli, bundled in Chest_Imaging_Platform extension)
• ComputeCrossSectionalArea (cli, bundled in Chest_Imaging_Platform extension)
• GenerateParenchymaPhenotypes (cli, bundled in Chest_Imaging_Platform extension)
• LabelParticlesByChestRegionChestType (cli, bundled in Chest_Imaging_Platform extension)
• GetTransformationSimilarityMetric (cli, bundled in Chest_Imaging_Platform extension)
• GetTransformationKappa2D (cli, bundled in Chest_Imaging_Platform extension)

Registration

• Introduction to Registration (by Dominik Meier)
• RegisterLungAtlas (cli, bundled in Chest_Imaging_Platform extension)
• RegisterLabelMaps (cli, bundled in Chest_Imaging_Platform extension)
• RegisterCT (cli, bundled in Chest_Imaging_Platform extension)

Segmentation

• GenerateOtsuLungCast (cli, bundled in Chest_Imaging_Platform extension)
• SegmentLungAirways (cli, bundled in Chest_Imaging_Platform extension)
• SegmentLungLobes (cli, bundled in Chest_Imaging_Platform extension)
• GeneratePartialLungLabelMap (cli, bundled in Chest_Imaging_Platform extension)
• GenerateSimpleLungMask (cli, bundled in Chest_Imaging_Platform extension)
• SplitLeftLungRightLung (cli, bundled in Chest_Imaging_Platform extension)
• GenerateBinaryThinning3D (cli, bundled in Chest_Imaging_Platform extension)
• GenerateLesionSegmentation (cli, bundled in Chest_Imaging_Platform extension)

Utils

• ConvertDicom (cli, bundled in Chest_Imaging_Platform extension)
• RegionTypeLocationsToROIVolume (cli, bundled in Chest_Imaging_Platform extension)
• ReadVTKWriteNRRDs (cli, bundled in Chest_Imaging_Platform extension)
• GenerateModel (cli, bundled in Chest_Imaging_Platform extension)
• GenerateOverlayImages (cli, bundled in Chest_Imaging_Platform extension)
• ExecuteSystemCommand (cli, bundled in Chest_Imaging_Platform extension)
• GetStructuresInLabelMap (cli, bundled in Chest_Imaging_Platform extension)
• FindPatchMatch (cli, bundled in Chest_Imaging_Platform extension)
• ConvertChestRegionChestTypeToLabelMapValue (cli, bundled in Chest_Imaging_Platform extension)
• MaskOutLabelMapStructures (cli, bundled in Chest_Imaging_Platform extension)
• ReadNRRDsWriteVTK (cli, bundled in Chest_Imaging_Platform extension)
• ConvertLabelMapValueToChestRegionChestType (cli, bundled in Chest_Imaging_Platform extension)
• ReadWriteRegionAndTypePoints (cli, bundled in Chest_Imaging_Platform extension)
• MergeChestLabelMaps (cli, bundled in Chest_Imaging_Platform extension)
• ReadVidaWriteCIP (cli, bundled in Chest_Imaging_Platform extension)
• ReadDicomWriteTags (cli, bundled in Chest_Imaging_Platform extension)
• TransferRegionAndTypeIndicesToFromPoints (cli, bundled in Chest_Imaging_Platform extension)

CIP

• CIP_ (scripted, bundled in Chest_Imaging_Platform extension)
• CIP_Common (scripted, bundled in Chest_Imaging_Platform extension)

Converters

• QuadEdgeSurfaceMesher (cli, bundled in SlicerProstate extension)
• CropVolume (loadable, built-in)
• OrientScalarVolume (cli, built-in)
• ConvertVTK (cli, bundled in UKFTractography extension)
• VectorToScalarVolume (scripted, built-in)
• CreateDICOMSeries (cli, built-in)
• ParticlesDisplay (loadable, bundled in Chest_Imaging_Platform extension)
• RegionType (loadable, bundled in Chest_Imaging_Platform extension)

Developer Tools

• Cameras (loadable, built-in)
• ExecutionModelTour (cli, built-in)
• NodeModifiedStatistics (scripted, bundled in DebuggingTools extension)
• PyDevRemoteDebug (scripted, bundled in DebuggingTools extension)
• ExtensionWizard (scripted, built-in)
• NodeInfo (scripted, bundled in DebuggingTools extension)
• ImageMaker (cli, bundled in ImageMaker extension)
• ExtensionStats (scripted, bundled in DeveloperToolsForExtensions extension)
• DeveloperToolsForExtensions (scripted, bundled in DeveloperToolsForExtensions extension)
• EventBroker
• DoubleArrays (loadable, built-in)

DICOM Plugins

• DICOMParametricMapPlugin
• DicomUltrasoundPlugin
• DICOMSegmentationPlugin
• DICOMSlicerDataBundlePlugin
• DICOMTID1500Plugin
• DICOMPETSUVPlugin
• DICOMScalarVolumePlugin
• DICOMDiffusionVolumePlugin
• DICOMLongitudinalPETCTPlugin
• DicomSroImportPlugin
• DICOMRWVMPlugin
• DicomRtImportExportPlugin
• MultiVolumeImporterPlugin

Editor Extensions

• FastGrowCutEffect (scripted, bundled in FastGrowCutEffect extension)
• CarreraSliceEffect (scripted, bundled in CarreraSlice extension)
• QuickTCGAEffect (scripted, bundled in SlicerPathology extension)
• PETTumorSegmentationEffect (scripted, bundled in PETTumorSegmentation extension)
• BinaryWatershedEffect (scripted, bundled in IASEM extension)
• DoubleThresholdEffect (scripted, bundled in IASEM extension)
• ShortCutEffect (scripted, bundled in SlicerPathology extension)

Matlab

• MatlabModuleGenerator (loadable, bundled in MatlabBridge extension)
• MatlabCommander (cli, bundled in MatlabBridge extension)

Segment Editor Extensions

• SegmentEditorPETTumor (scripted, bundled in PETTumorSegmentation extension)

Utils

• SlicerProstate (scripted, bundled in SlicerProstate extension)

Diffusion

• DMRIInstall (scripted, built-in)

Diffusion Data Conversion

• DWIConvert (cli, built-in)

Diffusion Tensor Images

• ResampleDTIlogEuclidean (cli, bundled in ResampleDTIlogEuclidean extension)

Diffusion Weighted Images

• BRAINSDWICleanup (cli, built-in)

Import and Export

• DWIConvert (cli, built-in)
• DICOMTract_to_VTK (cli, bundled in SlicerDMRI extension)
• VTK_to_DICOMTract (cli, bundled in SlicerDMRI extension)

Process

• DiffusionWeightedVolumeMasking (cli, bundled in SlicerDMRI extension)
• DWIToDTIEstimation (cli, bundled in SlicerDMRI extension)

Quantify

• DiffusionTensorScalarMeasurements (cli, bundled in SlicerDMRI extension)
• FiberTractMeasurements (cli, bundled in SlicerDMRI extension)

Tractography

• TractographyInteractiveSeeding (loadable, bundled in SlicerDMRI extension)
• TractographyDisplay (loadable, bundled in SlicerDMRI extension)
• UKFTractography (cli, bundled in UKFTractography extension)

Region-based

• TractographyLabelMapSeeding (cli, bundled in SlicerDMRI extension)
• FiberBundleLabelSelect (cli, bundled in SlicerDMRI extension)

Utilities

• BRAINSDWICleanup (cli, built-in)
• ResampleDTIVolume (cli, built-in)
• FiberBundleToLabelMap (scripted, bundled in SlicerDMRI extension)
• ResampleScalarVectorDWIVolume (cli, built-in)
• DICOM2FullBrainTractography (scripted, bundled in SlicerDMRI extension)

Editor Effects

• WindowLevelEffect (scripted, bundled in WindowLevelEffect extension)

EditorEffect

• PETTumorSegmentation (loadable, bundled in PETTumorSegmentation extension)

Endoscopy

• Endoscopy (scripted, built-in)

Examples

• FastGrowCut (loadable, bundled in FastGrowCutEffect extension)
• QuickTCGA (loadable, bundled in SlicerPathology extension)
• FastGrowCutSegmenter (loadable, bundled in CarreraSlice extension)
• ShortCutCore (loadable, bundled in SlicerPathology extension)
• GraphCutInteractiveSegmenter (loadable, bundled in GraphCutSegment extension)
• CarreraSlice (loadable, bundled in CarreraSlice extension)

Exporter

• SlicerToKiwiExporter (scripted, bundled in SlicerToKiwiExporter extension)

Filter

• IslandRemoval (cli, built-in)

Filtering

• SegmentationSmoothing (cli, bundled in SlicerProstate extension)
• N4ITKBiasFieldCorrection (cli, built-in)
• ImageLabelCombine (cli, built-in)
• VotingBinaryHoleFillingImageFilter (cli, built-in)
• CheckerBoardFilter (cli, built-in)
• AstroSmoothing (loadable, bundled in SlicerAstro extension)
• ExtractSkeleton (cli, built-in)
• SimpleFilters (scripted, built-in)
• ThresholdScalarVolume (cli, built-in)
• HistogramMatching (cli, built-in)

Arithmetic

• MultiplyScalarVolumes (cli, built-in)
• AddScalarVolumes (cli, built-in)
• MaskScalarVolume (cli, built-in)
• SubtractScalarVolumes (cli, built-in)
• CastScalarVolume (cli, built-in)
• BlendVectorVolumes (cli, bundled in OpenCVExample extension)

Denoising

• CurvatureAnisotropicDiffusion (cli, built-in)
• GradientAnisotropicDiffusion (cli, built-in)
• MedianImageFilter (cli, built-in)
• GaussianBlurImageFilter (cli, built-in)

Morphology

• GrayscaleFillHoleImageFilter (cli, built-in)
• GrayscaleGrindPeakImageFilter (cli, built-in)

IGT

• Viewpoint (scripted, bundled in SlicerIGT extension)
• CollectFiducials (loadable, bundled in SlicerIGT extension)
• TransformFusion (loadable, bundled in SlicerIGT extension)
• GyroGuide (scripted, bundled in GyroGuide extension)
• PlusModelCatalogBrowser (scripted, bundled in SlicerIGT extension)
• CreateModels (loadable, bundled in SlicerIGT extension)
• NeedleFinder (scripted, bundled in NeedleFinder extension)
• TrackerStabilizer (loadable, bundled in TrackerStabilizer extension)
• PathExplorer (loadable, bundled in SlicerIGT extension)
• UltrasoundSnapshots (loadable, bundled in SlicerIGT extension)
• BreachWarning (loadable, bundled in SlicerIGT extension)
• FiducialRegistrationWizard (loadable, bundled in SlicerIGT extension)
• ModelRegistration (scripted, bundled in SlicerIGT extension)
• ResectionVolume (scripted, bundled in ResectionPlanner extension)
• PivotCalibration (loadable, bundled in SlicerIGT extension)
• VolumeResliceDriver (loadable, bundled in SlicerIGT extension)
• OpenIGTLinkRemote (loadable, bundled in SlicerIGT extension)
• FiducialsToModelRegistration (scripted, bundled in SlicerIGT extension)
• Watchdog (loadable, bundled in SlicerIGT extension)
• CornerAnnotation (scripted, bundled in CornerAnnotation extension)
• OpenIGTLinkIF (loadable, built-in)
• MarkupsToModel (loadable, bundled in SlicerIGT extension)
• iGyne (scripted, bundled in iGyne extension)
• PlusRemote (scripted, bundled in SlicerIGT extension)

Informatics

• tid1500writer (cli, bundled in DCMQI extension)
• mpReviewPreprocessor (scripted, bundled in mpReview extension)
• SEG2NRRD (cli)
• TCIABrowser (scripted, bundled in TCIABrowser extension)
• segimage2itkimage (cli, bundled in DCMQI extension)
• mpReview (scripted, bundled in mpReview extension)
• Tables (loadable, built-in)
• Data (loadable, built-in)
• DumpSEGFrame (cli)
• tid1500reader (cli, bundled in DCMQI extension)
• Terminologies (loadable, built-in)
• Units (loadable, built-in)
• DICOM (scripted, built-in)
• SampleData (scripted, built-in)
• Colors (loadable, built-in)
• CurveMaker (scripted, bundled in CurveMaker extension)
• Annotations (loadable, built-in)
• Markups (loadable, built-in)
• SubjectHierarchy (loadable, built-in)
• QuantitativeReporting (scripted, bundled in QuantitativeReporting extension)

Converters

• itkimage2paramap (cli, bundled in DCMQI extension)
• paramap2itkimage (cli, bundled in DCMQI extension)
• itkimage2segimage (cli, bundled in DCMQI extension)
• EncodeSEG (cli)

Legacy

Converters

• BSplineToDeformationField (cli, built-in)

Filtering

• OtsuThresholdImageFilter (cli, built-in)
• ResampleScalarVolume (cli, built-in)

Registration

• TestGridTransformRegistration (cli, built-in)
• ExpertAutomatedRegistration (cli, built-in)

Work in Progress

Diffusion Tensor

Test

• DiffusionTensorTest (cli, built-in)

Libraries

• OpenCV (loadable, bundled in SlicerOpenCV extension)

Machine Learning

• DeepInfer (scripted, bundled in DeepInfer extension)

Margin Calculator

• MarginCalculator (scripted, bundled in MarginCalculator extension)
• DoseMorphology (loadable, bundled in MarginCalculator extension)
• SyntheticRTDose (scripted, bundled in MarginCalculator extension)

Mesh Generation

• CleaverCLI (cli, bundled in CleaverExtension extension)

MeshGeneration

• BodyCentricCubicMesh (cli, bundled in CBC_3D_I2MConversion extension)

Microscopy

• IASEMImportSeries (cli, bundled in IASEM extension)
• IASEMImport (cli, bundled in IASEM extension)
• BinShrink (cli, bundled in IASEM extension)
• LabelObjectStatistics (scripted, bundled in IASEM extension)
• SpacingAwareCurvatureDiffusion (cli, bundled in IASEM extension)

MultiVolume Support

• MultiVolumeImporter (scripted, built-in)
• MultiVolumeExplorer (loadable, built-in)

Pathology

• SlicerPathology (scripted, bundled in SlicerPathology extension)

Perk Tutor

• PythonMetricsCalculator (scripted, bundled in PerkTutor extension)
• TransformRecorder (loadable, bundled in PerkTutor extension)
• PerkEvaluator (loadable, bundled in PerkTutor extension)
• WorkflowSegmentation (loadable, bundled in PerkTutor extension)

Plastimatch

• DicomSroExport (scripted, bundled in SlicerRT extension)
• PlmRegister (scripted, bundled in SlicerRT extension)

Registration

• plastimatch_slicer_bspline (cli, bundled in SlicerRT extension)
• plastimatch_slicer_landwarp (cli, bundled in SlicerRT extension)

Utilities

• PlastimatchPy (loadable, bundled in SlicerRT extension)

Quantification

• DSCMRIAnalysis (cli, bundled in DSCMRIAnalysis extension)
• PETLiverUptakeMeasurement (cli, bundled in PETLiverUptakeMeasurement extension)
• PETIndiC (scripted, bundled in PET-IndiC extension)
• Q3DC (scripted, bundled in Q3DC extension)
• HeterogeneityCAD (scripted, bundled in OpenCAD extension)
• ShapeQuantifier (scripted, bundled in ShapeQuantifier extension)
• QuantitativeIndicesCLI (cli, bundled in PET-IndiC extension)
• PETStandardUptakeValueComputation (cli, built-in)
• SUVFactorCalculator (cli, bundled in PETDICOMExtension extension)
• SpinalCurvatureMeasurement (scripted, bundled in Scoliosis extension)
• QuantitativeIndicesTool (scripted, bundled in PET-IndiC extension)
• SegmentStatistics (scripted, built-in)
• LabelStatistics (scripted, built-in)
• MeshStatistics (scripted, bundled in MeshStatisticsExtension extension)
• DWModeling (cli, bundled in SlicerProstate extension)
• BRAINSLabelStats (cli, built-in)
• PkModeling (cli, bundled in PkModeling extension)
• PETSUVImageMaker (cli, bundled in LongitudinalPETCT extension)
• DataProbe (scripted, built-in)
• ModelToModelDistance (cli, bundled in ModelToModelDistance extension)
• T1Mapping (cli, bundled in T1Mapping extension)
• SlicerAstroDataProbe (scripted, bundled in SlicerAstro extension)
• AnglePlanes (scripted, bundled in ShapeQuantifier extension)
• dPetBrainQuantification (scripted, bundled in PetSpectAnalysis extension)
• PickAndPaint (scripted, bundled in PickAndPaintExtension extension)
• QuantitativeReporting (scripted, bundled in QuantitativeReporting extension)
• DiceComputation (loadable, bundled in DiceComputation extension)

ChangeQuantification

• IntensityDifferenceMetric (cli, bundled in ChangeTracker extension)

Radiology

• SliceTracker (scripted, bundled in SliceTracker extension)
• SliceTrackerRegistration (scripted, bundled in SliceTracker extension)
• SliceTrackerZFrameRegistration (scripted, bundled in SliceTracker extension)

Radiotherapy

• Beams (loadable, bundled in SlicerRT extension)
• DvhComparison (scripted, bundled in SlicerRT extension)
• DoseVolumeHistogram (loadable, bundled in SlicerRT extension)
• DicomRtImportExport (loadable, bundled in SlicerRT extension)
• DoseAccumulation (loadable, bundled in SlicerRT extension)
• ExternalBeamPlanning (loadable, bundled in SlicerRT extension)
• SegmentComparison (loadable, bundled in SlicerRT extension)
• PlanarImage (loadable, bundled in SlicerRT extension)
• Isodose (loadable, bundled in SlicerRT extension)
• DoseComparison (loadable, bundled in SlicerRT extension)
• SegmentMorphology (loadable, bundled in SlicerRT extension)
• DicomSroImport (loadable, bundled in SlicerRT extension)

Registration

• Introduction to Registration (by Dominik Meier)
• Transforms (loadable, built-in)
• BRAINSResize (cli, built-in)
• PerformMetricTest (cli, built-in)
• LandmarkRegistration (scripted, built-in)
• PBNRR (cli, bundled in PBNRR extension)
• BRAINSResample (cli, built-in)
• BRAINSFit (cli, built-in)

CMF Registration

• ApplyMatrix (cli, bundled in CMFreg extension)
• LabelExtraction (cli, bundled in CMFreg extension)
• LabelAddition (cli, bundled in CMFreg extension)
• Downsize (cli, bundled in CMFreg extension)
• SurfaceRegistration (scripted, bundled in CMFreg extension)

Voxelbase Registration

• NonGrowing (cli, bundled in CMFreg extension)
• Growing (cli, bundled in CMFreg extension)
• MaskCreation (cli, bundled in CMFreg extension)

Label Registration

• DistanceMapBasedRegistration (scripted, bundled in SlicerProstate extension)

Specialized

• ACPCTransform (cli, built-in)
• FiducialRegistration (cli, built-in)
• BRAINSDemonWarp (cli, built-in)
• Reformat (loadable, built-in)
• ScatteredTransform (cli, bundled in ScatteredTransform extension)
• VBRAINSDemonWarp (cli, built-in)

Segmentation

• ROBEXBrainExtraction (cli, bundled in ROBEXBrainExtraction extension)
• EMSegmentQuick (loadable, built-in)
• VolumeClipWithModel (scripted, bundled in VolumeClip extension)
• ABC (cli, bundled in ABC extension)
• VolumeClipToLabel (scripted, bundled in SliceTracker extension)
• AirwaySegmentationCLI (cli, bundled in AirwaySegmentation extension)
• LAScarSegmenter (cli, bundled in LAScarSegmenter extension)
• SegmentEditor (scripted, built-in)
• AirwaySegmentation (scripted, bundled in AirwaySegmentation extension)
• SkullStripper (cli, bundled in SkullStripper extension)
• SegmentEditorFastMarching (scripted, bundled in SegmentEditorExtraEffects extension)
• SobolevSegmenter (cli, bundled in SobolevSegmenter extension)
• VolumeClipWithRoi (scripted, bundled in VolumeClip extension)
• SegmentCAD (scripted, bundled in OpenCAD extension)
• SwissSkullStripper (cli, bundled in SwissSkullStripper extension)
• SegmentEditorFloodFilling (scripted, bundled in SegmentEditorExtraEffects extension)
• Wasp (scripted, bundled in Wasp extension)
• Editor (scripted, built-in)
• SimpleRegionGrowingSegmentation (cli, built-in)
• EMSegment (loadable, built-in)
• QuantitativeReporting (scripted, bundled in QuantitativeReporting extension)
• IntensitySegmenter (cli, bundled in IntensitySegmenter extension)
• SegmentEditorWatershed (scripted, bundled in SegmentEditorExtraEffects extension)

Specialized

• BRAINSROIAuto (cli, built-in)
• RobustStatisticsSegmenter (cli, built-in)
• EMSegmentCommandLine (cli, built-in)

Sequences

• Sequences (loadable, bundled in Sequences extension)
• SequenceBrowser (loadable, bundled in Sequences extension)
• MetafileImporter (loadable, bundled in Sequences extension)

Slicelets

• FilmDosimetryAnalysis (scripted, bundled in FilmDosimetryAnalysis extension)
• GelDosimetryAnalysis (scripted, bundled in GelDosimetryAnalysis extension)
• GelDosimetryAnalysisAlgo (loadable, bundled in GelDosimetryAnalysis extension)

SlicerProstate

• ZFrameCalibration (cli, bundled in SliceTracker extension)

Surface Models

• SurfaceToolbox (scripted, built-in)
• GrayscaleModelMaker (cli, built-in)
• ModelMaker (cli, built-in)
• ModelToLabelMap (cli, built-in)
• MergeModels (cli, built-in)
• EasyClip (scripted, bundled in EasyClip extension)
• LabelMapSmoothing (cli, built-in)
• MeshToLabelMap (cli, bundled in MeshToLabelMap extension)
• ProbeVolumeWithModel (cli, built-in)
• TextureModel (scripted, bundled in SlicerIGT extension)

TestCases

• SEGExporterSelfTest

Testing

• CLI4Test
• ThresholdThreadingTest
• ScoliosisMonitoring (scripted, bundled in Scoliosis extension)
• SlicerMRBSaveRestoreCheckPathsTest
• CLIROITest (cli, built-in)
• PerformanceTests
• SlicerMRBMultipleSaveRestoreTest
• SlicerMRBTest
• SEGExporterSelfTest
• SelfTests
• SlicerMRBMultipleSaveRestoreLoopTest

IGT Tests

• BreachWarningSelfTest
• WatchdogSelfTest

SlicerRT Tests

• IGRTWorkflow_SelfTest
• BatchStructureSetConversion (scripted, bundled in SlicerRT extension)

TestCases

• AtlasTests
• AddStorableDataAfterSceneViewTest
• test_tractography_display
• SlicerTransformInteractionTest1
• RSNAQuantTutorial
• NeurosurgicalPlanningTutorialMarkupsSelfTest
• ChangeTrackerSelfTest
• FiducialLayoutSwitchBug1914
• GraphCutSegmentSelfTest
• SlicerBoundsTest
• UtilTest
• Charting (scripted, built-in)
• CardiacAgatstonMeasures (scripted, bundled in CardiacAgatstonMeasures extension)
• fiber_visibility_crash2438
• RSNAVisTutorial
• JRC2013Vis
• AddManyMarkupsFiducialTest
• CropVolumeSelfTest
• SliceLinkLogic (scripted, built-in)
• VolumeRenderingSceneClose (scripted, built-in)
• slicerCloseCrashBug2590
• CLIEventTest
• NsgPlanTracto (scripted, bundled in SlicerDMRI extension)
• MarkupsWidgetsSelfTest
• TablesSelfTest
• SlicerOrientationSelectorTest
• MarkupsInViewsSelfTest
• TwoCLIsInParallelTest
• SubjectHierarchyCorePluginsSelfTest
• SubjectHierarchyGenericSelfTest
• ScenePerformance (scripted, built-in)
• MarkupsInCompareViewersSelfTest
• sceneImport2428
• RSNA2012ProstateDemo
• DTINotReproducibleIssue3977
• TwoCLIsInARowTest
• ColorsScalarBarSelfTest
• BRAINSFitRigidRegistrationCrashIssue4139
• Slicer4Minute (scripted, built-in)
• ViewControllersSliceInterpolationBug1926

Ultrasound

• ScanConvertCurvilinearArray (cli, bundled in SlicerITKUltrasound extension)
• ScanConvertPhasedArray3D (cli, bundled in SlicerITKUltrasound extension)
• ScanConvertSliceSeries (cli, bundled in SlicerITKUltrasound extension)

Uncategorized

• ShapeQuantifierCore (scripted, bundled in ShapeQuantifier extension)
• DatabaseInteractorLib (scripted, bundled in DatabaseInteractor extension)

Utilities

• ScreenCapture (scripted, built-in)
• DataStore (loadable, built-in)
• DICOMPatcher (scripted, built-in)
• BRAINSStripRotation (cli, built-in)
• EMSegmentTransformToNewFormat (cli, built-in)

BRAINS

• BRAINSTransformConvert (cli, built-in)

Vascular Modeling Toolkit

• CenterlineComputation (scripted, bundled in VMTK extension)
• LevelSetSegmentation (scripted, bundled in VMTK extension)
• VesselnessFiltering (scripted, bundled in VMTK extension)

Web System Tools

• DatabaseInteractor (scripted, bundled in DatabaseInteractor extension)

Wizards

• CompareVolumes (scripted, built-in)
• ChangeTracker (scripted, bundled in ChangeTracker extension)

XNATSlicer

• XnatSlicer (scripted, bundled in XNATSlicer extension)

Modules by name

367 modules:

• ABC (cli, bundled in ABC extension)
• ACPCTransform (cli, built-in)
• AddScalarVolumes (cli, built-in)
• AirwayInspector (loadable, bundled in Chest_Imaging_Platform extension)
• AirwaySegmentation (scripted, bundled in AirwaySegmentation extension)
• AirwaySegmentationCLI (cli, bundled in AirwaySegmentation extension)
• AnglePlanes (scripted, bundled in ShapeQuantifier extension)
• Annotations (loadable, built-in)
• ApplyMatrix (cli, bundled in CMFreg extension)
• AstroModeling (loadable, bundled in SlicerAstro extension)
• AstroSampleData (scripted, bundled in SlicerAstro extension)
• AstroSmoothing (loadable, bundled in SlicerAstro extension)
• AstroVolume (loadable, bundled in SlicerAstro extension)
• AstroWelcome (loadable, bundled in SlicerAstro extension)
• Beams (loadable, bundled in SlicerRT extension)
• BinShrink (cli, bundled in IASEM extension)
• BlendVectorVolumes (cli, bundled in OpenCVExample extension)
• BodyCentricCubicMesh (cli, bundled in CBC_3D_I2MConversion extension)
• BRAINSDemonWarp (cli, built-in)
• BRAINSDWICleanup (cli, built-in)
• BRAINSFit (cli, built-in)
• BRAINSLabelStats (cli, built-in)
• BRAINSResample (cli, built-in)
• BRAINSResize (cli, built-in)
• BRAINSROIAuto (cli, built-in)
• BRAINSStripRotation (cli, built-in)
• BRAINSTransformConvert (cli, built-in)
• BreachWarning (loadable, bundled in SlicerIGT extension)
• CarreraSlice (loadable, bundled in CarreraSlice extension)
• CastScalarVolume (cli, built-in)
• CenterlineComputation (scripted, bundled in VMTK extension)
• ChangeTracker (scripted, bundled in ChangeTracker extension)
• CheckerBoardFilter (cli, built-in)
• CIP_ (scripted, bundled in Chest_Imaging_Platform extension)
• CIP_BodyComposition (scripted, bundled in Chest_Imaging_Platform extension)
• CIP_CalciumScoring (scripted, bundled in Chest_Imaging_Platform extension)
• CIP_Common (scripted, bundled in Chest_Imaging_Platform extension)
• CIP_InteractiveLobeSegmentation (scripted, bundled in Chest_Imaging_Platform extension)
• CIP_LesionModel (scripted, bundled in Chest_Imaging_Platform extension)
• CIP_MIPViewer (scripted, bundled in Chest_Imaging_Platform extension)
• CIP_PAARatio (scripted, bundled in Chest_Imaging_Platform extension)
• CIP_ParenchymaAnalysis (scripted, bundled in Chest_Imaging_Platform extension)
• CIP_ParenchymaSubtypeTraining (scripted, bundled in Chest_Imaging_Platform extension)
• CIP_PointsLabelling (scripted, bundled in Chest_Imaging_Platform extension)
• CIP_TracheaStentPlanning (scripted, bundled in Chest_Imaging_Platform extension)
• ClassifyFissureParticles (cli, bundled in Chest_Imaging_Platform extension)
• CleaverCLI (cli, bundled in CleaverExtension extension)
• CMRToolkitAutomaticLeftAtrialScar (cli, bundled in Cardiac_MRI_Toolkit extension)
• CMRToolkitAxialDilate (cli, bundled in Cardiac_MRI_Toolkit extension)
• CMRToolkitBooleanREMOVEFilter (cli, bundled in Cardiac_MRI_Toolkit extension)
• CMRToolkitConnectedThresholdFilter (cli, bundled in Cardiac_MRI_Toolkit extension)
• CMRToolkitInhomogeneityCorrection (cli, bundled in Cardiac_MRI_Toolkit extension)
• CMRToolkitIsolatedConnectedFilter (cli, bundled in Cardiac_MRI_Toolkit extension)
• CMRToolkitLASegmentationGraphCuts (cli, bundled in Cardiac_MRI_Toolkit extension)
• CMRToolkitPVAntrumCut (cli, bundled in Cardiac_MRI_Toolkit extension)
• CMRToolkitRegistration (scripted, bundled in Cardiac_MRI_Toolkit extension)
• CMRToolkitRegistrationBRAINSFit (scripted, bundled in Cardiac_MRI_Toolkit extension)
• CMRToolkitWizard (scripted, bundled in Cardiac_MRI_Toolkit extension)
• CollectFiducials (loadable, bundled in SlicerIGT extension)
• Colors (loadable, built-in)
• CompareVolumes (scripted, built-in)
• ComputeCrossSectionalArea (cli, bundled in Chest_Imaging_Platform extension)
• ComputeDistanceMap (cli, bundled in Chest_Imaging_Platform extension)
• ComputeFeatureStrength (cli, bundled in Chest_Imaging_Platform extension)
• ComputeFissureFeatureVectors (cli, bundled in Chest_Imaging_Platform extension)
• ComputeIntensityStatistics (cli, bundled in Chest_Imaging_Platform extension)
• ConvertChestRegionChestTypeToLabelMapValue (cli, bundled in Chest_Imaging_Platform extension)
• ConvertDicom (cli, bundled in Chest_Imaging_Platform extension)
• ConvertLabelMapValueToChestRegionChestType (cli, bundled in Chest_Imaging_Platform extension)
• ConvertVTK (cli, bundled in UKFTractography extension)
• CornerAnnotation (scripted, bundled in CornerAnnotation extension)
• CreateDICOMSeries (cli, built-in)
• CreateModels (loadable, bundled in SlicerIGT extension)
• CropLung (cli, bundled in Chest_Imaging_Platform extension)
• CropVolume (loadable, built-in)
• CurvatureAnisotropicDiffusion (cli, built-in)
• CurveMaker (scripted, bundled in CurveMaker extension)
• Data (loadable, built-in)
• DatabaseInteractor (scripted, bundled in DatabaseInteractor extension)
• DatabaseInteractorLib (scripted, bundled in DatabaseInteractor extension)
• DataProbe (scripted, built-in)
• DataStore (loadable, built-in)
• DeepInfer (scripted, bundled in DeepInfer extension)
• DiceComputation (loadable, bundled in DiceComputation extension)
• DICOM (scripted, built-in)
• DICOM2FullBrainTractography (scripted, bundled in SlicerDMRI extension)
• DICOMPatcher (scripted, built-in)
• DicomRtImportExport (loadable, bundled in SlicerRT extension)
• DicomSroExport (scripted, bundled in SlicerRT extension)
• DicomSroImport (loadable, bundled in SlicerRT extension)
• DICOMTract_to_VTK (cli, bundled in SlicerDMRI extension)
• DiffusionTensorScalarMeasurements (cli, bundled in SlicerDMRI extension)
• DiffusionWeightedVolumeMasking (cli, bundled in SlicerDMRI extension)
• DistanceMapBasedRegistration (scripted, bundled in SlicerProstate extension)
• DMRIInstall (scripted, built-in)
• DoseAccumulation (loadable, bundled in SlicerRT extension)
• DoseComparison (loadable, bundled in SlicerRT extension)
• DoseMorphology (loadable, bundled in MarginCalculator extension)
• DoseVolumeHistogram (loadable, bundled in SlicerRT extension)
• Downsize (cli, bundled in CMFreg extension)
• dPetBrainQuantification (scripted, bundled in PetSpectAnalysis extension)
• DSCMRIAnalysis (cli, bundled in DSCMRIAnalysis extension)
• DumpSEGFrame (cli)
• DvhComparison (scripted, bundled in SlicerRT extension)
• DWIConvert (cli, built-in)
• DWIToDTIEstimation (cli, bundled in SlicerDMRI extension)
• DWModeling (cli, bundled in SlicerProstate extension)
• EasyClip (scripted, bundled in EasyClip extension)
• Editor (scripted, built-in)
• EMSegment (loadable, built-in)
• EMSegmentCommandLine (cli, built-in)
• EMSegmentQuick (loadable, built-in)
• EMSegmentTransformToNewFormat (cli, built-in)
• EncodeSEG (cli)
• Endoscopy (scripted, built-in)
• EnhanceFissuresInImage (cli, bundled in Chest_Imaging_Platform extension)
• EvaluateLungLobeSegmentationResults (cli, bundled in Chest_Imaging_Platform extension)
• ExecuteSystemCommand (cli, bundled in Chest_Imaging_Platform extension)
• ExternalBeamPlanning (loadable, bundled in SlicerRT extension)
• ExtractChestLabelMap (cli, bundled in Chest_Imaging_Platform extension)
• ExtractFissureBoundaryFromLobeMap (cli, bundled in Chest_Imaging_Platform extension)
• ExtractParticlesFromChestRegionChestType (cli, bundled in Chest_Imaging_Platform extension)
• ExtractSkeleton (cli, built-in)
• FastGrowCut (loadable, bundled in FastGrowCutEffect extension)
• FastGrowCutSegmenter (loadable, bundled in CarreraSlice extension)
• FiberBundleLabelSelect (cli, bundled in SlicerDMRI extension)
• FiberBundleToLabelMap (scripted, bundled in SlicerDMRI extension)
• FiberTractMeasurements (cli, bundled in SlicerDMRI extension)
• FiducialRegistration (cli, built-in)
• FiducialRegistrationWizard (loadable, bundled in SlicerIGT extension)
• FiducialsToModelRegistration (scripted, bundled in SlicerIGT extension)
• FilmDosimetryAnalysis (scripted, bundled in FilmDosimetryAnalysis extension)
• FilterAirwayParticleData (cli, bundled in Chest_Imaging_Platform extension)
• FilterConnectedComponents (cli, bundled in Chest_Imaging_Platform extension)
• FilterFissureParticleData (cli, bundled in Chest_Imaging_Platform extension)
• FilterVesselParticleData (cli, bundled in Chest_Imaging_Platform extension)
• FindPatchMatch (cli, bundled in Chest_Imaging_Platform extension)
• FitLobeSurfaceModelsToParticleData (cli, bundled in Chest_Imaging_Platform extension)
• GaussianBlurImageFilter (cli, built-in)
• GelDosimetryAnalysis (scripted, bundled in GelDosimetryAnalysis extension)
• GelDosimetryAnalysisAlgo (loadable, bundled in GelDosimetryAnalysis extension)
• GenerateAtlasConvexHull (cli, bundled in Chest_Imaging_Platform extension)
• GenerateBinaryThinning3D (cli, bundled in Chest_Imaging_Platform extension)
• GenerateDistanceMapFromLabelMap (cli, bundled in Chest_Imaging_Platform extension)
• GenerateImageSubVolumes (cli, bundled in Chest_Imaging_Platform extension)
• GenerateLesionSegmentation (cli, bundled in Chest_Imaging_Platform extension)
• GenerateLobeSurfaceModels (cli, bundled in Chest_Imaging_Platform extension)
• GenerateMedianFilteredImage (cli, bundled in Chest_Imaging_Platform extension)
• GenerateModel (cli, bundled in Chest_Imaging_Platform extension)
• GenerateNLMFilteredImage (cli, bundled in Chest_Imaging_Platform extension)
• GenerateOtsuLungCast (cli, bundled in Chest_Imaging_Platform extension)
• GenerateOverlayImages (cli, bundled in Chest_Imaging_Platform extension)
• GenerateParenchymaPhenotypes (cli, bundled in Chest_Imaging_Platform extension)
• GeneratePartialLungLabelMap (cli, bundled in Chest_Imaging_Platform extension)
• GenerateSimpleLungMask (cli, bundled in Chest_Imaging_Platform extension)
• GenerateStenciledLabelMapFromParticles (cli, bundled in Chest_Imaging_Platform extension)
• GetStructuresInLabelMap (cli, bundled in Chest_Imaging_Platform extension)
• GetTransformationKappa (cli, bundled in Chest_Imaging_Platform extension)
• GetTransformationKappa2D (cli, bundled in Chest_Imaging_Platform extension)
• GetTransformationSimilarityMetric (cli, bundled in Chest_Imaging_Platform extension)
• GradientAnisotropicDiffusion (cli, built-in)
• GraphCutInteractiveSegmenter (loadable, bundled in GraphCutSegment extension)
• GraphCutsOptimization (cli, bundled in Chest_Imaging_Platform extension)
• GrayscaleFillHoleImageFilter (cli, built-in)
• GrayscaleGrindPeakImageFilter (cli, built-in)
• GrayscaleModelMaker (cli, built-in)
• Growing (cli, bundled in CMFreg extension)
• GyroGuide (scripted, bundled in GyroGuide extension)
• HeterogeneityCAD (scripted, bundled in OpenCAD extension)
• HistogramMatching (cli, built-in)
• IASEMImport (cli, bundled in IASEM extension)
• IASEMImportSeries (cli, bundled in IASEM extension)
• iGyne (scripted, bundled in iGyne extension)
• ImageLabelCombine (cli, built-in)
• IntensityDifferenceMetric (cli, bundled in ChangeTracker extension)
• IntensitySegmenter (cli, bundled in IntensitySegmenter extension)
• IslandRemoval (cli, built-in)
• Isodose (loadable, bundled in SlicerRT extension)
• itkimage2paramap (cli, bundled in DCMQI extension)
• itkimage2segimage (cli, bundled in DCMQI extension)
• KUtil (scripted, bundled in CarreraSlice extension)
• LabelAddition (cli, bundled in CMFreg extension)
• LabelExtraction (cli, bundled in CMFreg extension)
• LabelMapFromRegionAndTypePoints (cli, bundled in Chest_Imaging_Platform extension)
• LabelMapSmoothing (cli, built-in)
• LabelObjectStatistics (scripted, bundled in IASEM extension)
• LabelParticlesByChestRegionChestType (cli, bundled in Chest_Imaging_Platform extension)
• LabelStatistics (scripted, built-in)
• LandmarkRegistration (scripted, built-in)
• LAScarSegmenter (cli, bundled in LAScarSegmenter extension)
• LASegmentationWorkflow (scripted, bundled in Cardiac_MRI_Toolkit extension)
• LevelSetSegmentation (scripted, bundled in VMTK extension)
• MarginCalculator (scripted, bundled in MarginCalculator extension)
• Markups (loadable, built-in)
• MarkupsToModel (loadable, bundled in SlicerIGT extension)
• MaskCreation (cli, bundled in CMFreg extension)
• MaskOutLabelMapStructures (cli, bundled in Chest_Imaging_Platform extension)
• MaskScalarVolume (cli, built-in)
• MedianImageFilter (cli, built-in)
• MergeChestLabelMaps (cli, bundled in Chest_Imaging_Platform extension)
• MergeModels (cli, built-in)
• MergeParticleDataSets (cli, bundled in Chest_Imaging_Platform extension)
• MeshStatistics (scripted, bundled in MeshStatisticsExtension extension)
• MeshToLabelMap (cli, bundled in MeshToLabelMap extension)
• MetafileImporter (loadable, bundled in Sequences extension)
• ModelMaker (cli, built-in)
• ModelRegistration (scripted, bundled in SlicerIGT extension)
• Models (loadable, built-in)
• ModelToLabelMap (cli, built-in)
• ModelToModelDistance (cli, bundled in ModelToModelDistance extension)
• mpReview (scripted, bundled in mpReview extension)
• mpReviewPreprocessor (scripted, bundled in mpReview extension)
• MultiplyScalarVolumes (cli, built-in)
• MultiVolumeExplorer (loadable, built-in)
• MultiVolumeImporter (scripted, built-in)
• N4ITKBiasFieldCorrection (cli, built-in)
• NeedleFinder (scripted, bundled in NeedleFinder extension)
• NonGrowing (cli, bundled in CMFreg extension)
• OpenCV (loadable, bundled in SlicerOpenCV extension)
• OpenIGTLinkIF (loadable, built-in)
• OpenIGTLinkRemote (loadable, bundled in SlicerIGT extension)
• OrientScalarVolume (cli, built-in)
• paramap2itkimage (cli, bundled in DCMQI extension)
• ParticlesDisplay (loadable, bundled in Chest_Imaging_Platform extension)
• PathExplorer (loadable, bundled in SlicerIGT extension)
• PBNRR (cli, bundled in PBNRR extension)
• PerformMetricTest (cli, built-in)
• PerformMorphological (cli, bundled in Chest_Imaging_Platform extension)
• PerkEvaluator (loadable, bundled in PerkTutor extension)
• PerturbParticles (cli, bundled in Chest_Imaging_Platform extension)
• PETIndiC (scripted, bundled in PET-IndiC extension)
• PETLiverUptakeMeasurement (cli, bundled in PETLiverUptakeMeasurement extension)
• PETStandardUptakeValueComputation (cli, built-in)
• PETSUVImageMaker (cli, bundled in LongitudinalPETCT extension)
• PETTumorSegmentation (loadable, bundled in PETTumorSegmentation extension)
• Philips4dUsDicomPatcher (scripted, bundled in SlicerHeart extension)
• PickAndPaint (scripted, bundled in PickAndPaintExtension extension)
• PivotCalibration (loadable, bundled in SlicerIGT extension)
• PkModeling (cli, bundled in PkModeling extension)
• PlanarImage (loadable, bundled in SlicerRT extension)
• plastimatch_slicer_bspline (cli, bundled in SlicerRT extension)
• plastimatch_slicer_landwarp (cli, bundled in SlicerRT extension)
• PlastimatchPy (loadable, bundled in SlicerRT extension)
• PlmRegister (scripted, bundled in SlicerRT extension)
• PlusModelCatalogBrowser (scripted, bundled in SlicerIGT extension)
• PlusRemote (scripted, bundled in SlicerIGT extension)
• ProbeVolumeWithModel (cli, built-in)
• PythonMetricsCalculator (scripted, bundled in PerkTutor extension)
• Q3DC (scripted, bundled in Q3DC extension)
• QuadEdgeSurfaceMesher (cli, bundled in SlicerProstate extension)
• QualityControl (cli, bundled in Chest_Imaging_Platform extension)
• QuantitativeIndicesCLI (cli, bundled in PET-IndiC extension)
• QuantitativeIndicesTool (scripted, bundled in PET-IndiC extension)
• QuantitativeReporting (scripted, bundled in QuantitativeReporting extension)
• QuickTCGA (loadable, bundled in SlicerPathology extension)
• ReadDicomWriteTags (cli, bundled in Chest_Imaging_Platform extension)
• ReadNRRDsWriteVTK (cli, bundled in Chest_Imaging_Platform extension)
• ReadVidaWriteCIP (cli, bundled in Chest_Imaging_Platform extension)
• ReadVTKWriteNRRDs (cli, bundled in Chest_Imaging_Platform extension)
• ReadWriteImageData (cli, bundled in Chest_Imaging_Platform extension)
• ReadWriteRegionAndTypePoints (cli, bundled in Chest_Imaging_Platform extension)
• Reformat (loadable, built-in)
• RegionType (loadable, bundled in Chest_Imaging_Platform extension)
• RegionTypeLocationsToROIVolume (cli, bundled in Chest_Imaging_Platform extension)
• RegisterCT (cli, bundled in Chest_Imaging_Platform extension)
• RegisterLabelMaps (cli, bundled in Chest_Imaging_Platform extension)
• RegisterLungAtlas (cli, bundled in Chest_Imaging_Platform extension)
• RemapLabelMap (cli, bundled in Chest_Imaging_Platform extension)
• RemoveChestTypeFromLabelMapUsingParticles (cli, bundled in Chest_Imaging_Platform extension)
• RemoveParticlesFromParticlesDataSet (cli, bundled in Chest_Imaging_Platform extension)
• ResampleCT (cli, bundled in Chest_Imaging_Platform extension)
• ResampleDTIlogEuclidean (cli, bundled in ResampleDTIlogEuclidean extension)
• ResampleDTIVolume (cli, built-in)
• ResampleLabelMap (cli, bundled in Chest_Imaging_Platform extension)
• ResampleScalarVectorDWIVolume (cli, built-in)
• RescaleLabelMap (cli, bundled in Chest_Imaging_Platform extension)
• ResectionVolume (scripted, bundled in ResectionPlanner extension)
• ROBEXBrainExtraction (cli, bundled in ROBEXBrainExtraction extension)
• RobustStatisticsSegmenter (cli, built-in)
• SampleData (scripted, built-in)
• ScanConvertCurvilinearArray (cli, bundled in SlicerITKUltrasound extension)
• ScanConvertPhasedArray3D (cli, bundled in SlicerITKUltrasound extension)
• ScanConvertSliceSeries (cli, bundled in SlicerITKUltrasound extension)
• ScarVisualization (scripted, bundled in Cardiac_MRI_Toolkit extension)
• ScatteredTransform (cli, bundled in ScatteredTransform extension)
• SceneViews (loadable, built-in)
• ScreenCapture (scripted, built-in)
• SEG2NRRD (cli)
• segimage2itkimage (cli, bundled in DCMQI extension)
• Segmentations (loadable, built-in)
• SegmentationSmoothing (cli, bundled in SlicerProstate extension)
• SegmentCAD (scripted, bundled in OpenCAD extension)
• SegmentComparison (loadable, bundled in SlicerRT extension)
• SegmentEditor (scripted, built-in)
• SegmentEditorFastMarching (scripted, bundled in SegmentEditorExtraEffects extension)
• SegmentEditorFloodFilling (scripted, bundled in SegmentEditorExtraEffects extension)
• SegmentEditorWatershed (scripted, bundled in SegmentEditorExtraEffects extension)
• SegmentLungAirways (cli, bundled in Chest_Imaging_Platform extension)
• SegmentLungLobes (cli, bundled in Chest_Imaging_Platform extension)
• SegmentMorphology (loadable, bundled in SlicerRT extension)
• SegmentStatistics (scripted, built-in)
• SequenceBrowser (loadable, bundled in Sequences extension)
• Sequences (loadable, bundled in Sequences extension)
• ShapeQuantifier (scripted, bundled in ShapeQuantifier extension)
• ShapeQuantifierCore (scripted, bundled in ShapeQuantifier extension)
• ShortCutCore (loadable, bundled in SlicerPathology extension)
• SimpleFilters (scripted, built-in)
• SimpleRegionGrowingSegmentation (cli, built-in)
• SkullStripper (cli, bundled in SkullStripper extension)
• SlicerAstroDataProbe (scripted, bundled in SlicerAstro extension)
• SlicerPathology (scripted, bundled in SlicerPathology extension)
• SlicerToKiwiExporter (scripted, bundled in SlicerToKiwiExporter extension)
• SliceTracker (scripted, bundled in SliceTracker extension)
• SliceTrackerRegistration (scripted, bundled in SliceTracker extension)
• SliceTrackerZFrameRegistration (scripted, bundled in SliceTracker extension)
• SobolevSegmenter (cli, bundled in SobolevSegmenter extension)
• SpacingAwareCurvatureDiffusion (cli, bundled in IASEM extension)
• SpinalCurvatureMeasurement (scripted, bundled in Scoliosis extension)
• SplitLeftLungRightLung (cli, bundled in Chest_Imaging_Platform extension)
• SubjectHierarchy (loadable, built-in)
• SubtractScalarVolumes (cli, built-in)
• SurfaceRegistration (scripted, bundled in CMFreg extension)
• SurfaceToolbox (scripted, built-in)
• SUVFactorCalculator (cli, bundled in PETDICOMExtension extension)
• SwissSkullStripper (cli, bundled in SwissSkullStripper extension)
• SyntheticRTDose (scripted, bundled in MarginCalculator extension)
• T1Mapping (cli, bundled in T1Mapping extension)
• Tables (loadable, built-in)
• TCIABrowser (scripted, bundled in TCIABrowser extension)
• Terminologies (loadable, built-in)
• TextureModel (scripted, bundled in SlicerIGT extension)
• ThresholdScalarVolume (cli, built-in)
• tid1500reader (cli, bundled in DCMQI extension)
• tid1500writer (cli, bundled in DCMQI extension)
• TrackerStabilizer (loadable, bundled in TrackerStabilizer extension)
• TractographyDisplay (loadable, bundled in SlicerDMRI extension)
• TractographyInteractiveSeeding (loadable, bundled in SlicerDMRI extension)
• TractographyLabelMapSeeding (cli, bundled in SlicerDMRI extension)
• TransferRegionAndTypeIndicesToFromPoints (cli, bundled in Chest_Imaging_Platform extension)
• TransformFusion (loadable, bundled in SlicerIGT extension)
• TransformRecorder (loadable, bundled in PerkTutor extension)
• Transforms (loadable, built-in)
• UKFTractography (cli, bundled in UKFTractography extension)
• UltrasoundSnapshots (loadable, bundled in SlicerIGT extension)
• Units (loadable, built-in)
• ValveView (scripted, bundled in SlicerHeart extension)
• VBRAINSDemonWarp (cli, built-in)
• VectorToScalarVolume (scripted, built-in)
• VesselnessFiltering (scripted, bundled in VMTK extension)
• VffFileReader (loadable, bundled in SlicerRT extension)
• ViewControllers (loadable, built-in)
• Viewpoint (scripted, bundled in SlicerIGT extension)
• VolumeClipToLabel (scripted, bundled in SliceTracker extension)
• VolumeClipWithModel (scripted, bundled in VolumeClip extension)
• VolumeClipWithRoi (scripted, bundled in VolumeClip extension)
• VolumeRendering (loadable, built-in)
• VolumeResliceDriver (loadable, bundled in SlicerIGT extension)
• Volumes (loadable, built-in)
• VotingBinaryHoleFillingImageFilter (cli, built-in)
• VTK_to_DICOMTract (cli, bundled in SlicerDMRI extension)
• Wasp (scripted, bundled in Wasp extension)
• Watchdog (loadable, bundled in SlicerIGT extension)
• Welcome (loadable, built-in)
• WindowLevelEffect (scripted, bundled in WindowLevelEffect extension)
• WorkflowSegmentation (loadable, bundled in PerkTutor extension)
• XnatSlicer (scripted, bundled in XNATSlicer extension)
• ZFrameCalibration (cli, bundled in SliceTracker extension)