Documentation/4.4/ModuleExtensionListing

• Modules by category
• Modules by name
• Modules by contributing organization
• Modules by contributing individual
• Modules by type
• Modules by extension
• Extensions by category
• Extensions by name
• Extensions by contributing organization
• Extensions by contributing individual

List of extensions known to be broken

Modules by category

37 categories:

• BRAINS
  • Label Statistics
• Cardiac MRI Toolkit
• CMF Registration
  • Voxelbase Registration
• Converters
• Developer Tools
  • DICOM Plugins
  • Editor Extensions
  • Matlab
• Diffusion
  • Diffusion Data Conversion
  • Diffusion Tensor Images
  • Diffusion Weighted Images
  • Fiber Analysis
  • Tractography
• Editor Effects
• Editor Effect
• Endoscopy
• Examples
• Exporter
• File
• Filtering
  • Arithmetic
  • Denoising
  • Morphology
• IGT
• Informatics
• Legacy
  • Converters
  • Diffusion
    • Denoising
    • Diffusion Data Conversion
  • Filtering
  • Registration
  • Work in Progress
    • Diffusion Tensor
      • Test
• Margin Calculator
• Mesh Generation
• Mesh Generation
• Microscopy
• Multidimensional data
• Multi Volume Support
• Perk Tutor
• Plastimatch
  • Registration
  • Utilities
• Quantification
  • Change Quantification
• Radiotherapy
• Registration
  • Specialized
• Segmentation
  • Specialized
• Shape Analysis
• Slicelets
• Surface Models
• Testing
  • IGT Tests
  • Slicer RT Tests
  • Test Cases
• Unspecified
• Utilities
  • BRAINS
• Vascular Modeling Toolkit
• Wizards
• Work in Progress
  • Converters
  • Informatics
    • Test Cases

BRAINS

LabelStatistics

• BRAINSLabel Stats (cli, built-in)

Cardiac MRI Toolkit

• CMRToolkit Registration (scripted, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Connected Threshold Filter (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Isolated Connected Filter (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Wizard (scripted, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Axial Dilate (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit PVAntrum Cut (cli, bundled in Cardiac MRI Toolkit extension)
• Scar Visualization (scripted, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Boolean REMOVEFilter (cli, bundled in Cardiac MRI Toolkit extension)
• LASegmentation Workflow (scripted, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Automatic Left Atrial Scar (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Registration BRAINSFit (scripted, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Inhomogeneity Correction (cli, bundled in Cardiac MRI Toolkit extension)

CMF Registration

• Apply Matrix (cli, bundled in CMFreg extension)
• Landmark Registration (scripted, bundled in CMFreg extension)
• Surface Registration (scripted, bundled in CMFreg extension)
• Label Extraction (cli, bundled in CMFreg extension)
• Label Addition (cli, bundled in CMFreg extension)
• Downsize (cli, bundled in CMFreg extension)

Voxelbase Registration

• Mask Creation (cli, bundled in CMFreg extension)
• Non Growing (cli, bundled in CMFreg extension)
• Growing (cli, bundled in CMFreg extension)

Converters

• Vector To Scalar Volume (scripted, built-in)
• Crop Volume (loadable, built-in)
• Create DICOMSeries (cli, built-in)
• Orient Scalar Volume (cli, built-in)

Developer Tools

• Event Broker
• Execution Model Tour (cli, built-in)
• Double Arrays (loadable, built-in)
• Cameras (loadable, built-in)
• Extension Stats (scripted, bundled in Developer Tools For Extensions extension)
• Developer Tools For Extensions (scripted, bundled in Developer Tools For Extensions extension)
• Extension Wizard (scripted, built-in)
• Image Maker (cli, bundled in Image Maker extension)

DICOM Plugins

• DICOMLongitudinal PETCTPlugin
• DICOMRWVMPlugin
• Multi Volume Importer Plugin
• DICOMPETSUVPlugin
• Dicom Rt Import Plugin
• DICOMDiffusion Volume Plugin
• DICOMSegmentation Plugin
• Dicom Sro Import Plugin
• DICOMScalar Volume Plugin
• DICOMSlicer Data Bundle Plugin

Editor Extensions

• Binary Watershed Effect (scripted, bundled in IASEM extension)
• Double Threshold Effect (scripted, bundled in IASEM extension)
• PETTumor Segmentation Effect (scripted, bundled in PETTumor Segmentation extension)

Matlab

• Matlab Commander (cli, bundled in Matlab Bridge extension)
• Matlab Module Generator (loadable, bundled in Matlab Bridge extension)

Diffusion

• DICOM2Full Brain Tractography (scripted, built-in)
• Tractography Display (loadable, built-in)

Diffusion Data Conversion

• DWIConvert (cli, built-in)

Diffusion Tensor Images

• Resample DTIVolume (cli, built-in)
• Diffusion Tensor Scalar Measurements (cli, built-in)
• Resample DTIlog Euclidean (cli, bundled in Resample DTIlog Euclidean extension)
• Tractography Label Map Seeding (cli, built-in)
• Tractography Interactive Seeding (loadable, built-in)

Diffusion Weighted Images

• DWIRician LMMSEFilter (cli, built-in)
• Resample Scalar Vector DWIVolume (cli, built-in)
• DWITo DTIEstimation (cli, built-in)
• Finsler Backtracing (cli, bundled in Finsler Tractography extension)
• DWIJoint Rician LMMSEFilter (cli, built-in)
• Finsler Tractography (cli, bundled in Finsler Tractography extension)
• Diffusion Weighted Volume Masking (cli, built-in)

FiberAnalysis

• DTIAtlas Fiber Analyzer (cli, bundled in DTIAtlas Fiber Analyzer extension)
• Fiber Compare (cli, bundled in DTIAtlas Fiber Analyzer extension)
• Merge Stat With Fiber (cli, bundled in DTIAtlas Fiber Analyzer extension)
• dtitractstat (cli, bundled in DTIAtlas Fiber Analyzer extension)

Tractography

• Fiber Bundle To Label Map (scripted, built-in)
• Fiber Bundle Label Select (cli, built-in)
• UKFTractography (cli, bundled in UKFTractography extension)

Editor Effects

• Window Level Effect (scripted, bundled in Window Level Effect extension)

EditorEffect

• PETTumor Segmentation (loadable, bundled in PETTumor Segmentation extension)

Endoscopy

• Endoscopy (scripted, built-in)

Examples

• Fast Grow Cut (loadable, bundled in Fast Grow Cut Effect extension)
• Fast Grow Cut Segmenter (loadable, bundled in Carrera Slice extension)
• Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)
• Carrera Slice (loadable, bundled in Carrera Slice extension)

Exporter

• Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)

File

• Convert VTK (cli, bundled in UKFTractography extension)

Filtering

• Extract Skeleton (cli, built-in)
• N4ITKBias Field Correction (cli, built-in)
• Simple Filters (scripted, built-in)
• Image Label Combine (cli, built-in)
• Voting Binary Hole Filling Image Filter (cli, built-in)
• Histogram Matching (cli, built-in)
• Checker Board Filter (cli, built-in)
• Threshold Scalar Volume (cli, built-in)

Arithmetic

• Multiply Scalar Volumes (cli, built-in)
• Add Scalar Volumes (cli, built-in)
• Cast Scalar Volume (cli, built-in)
• Subtract Scalar Volumes (cli, built-in)
• Mask Scalar Volume (cli, built-in)

Denoising

• Gradient Anisotropic Diffusion (cli, built-in)
• Median Image Filter (cli, built-in)
• Gaussian Blur Image Filter (cli, built-in)
• Curvature Anisotropic Diffusion (cli, built-in)

Morphology

• Grayscale Fill Hole Image Filter (cli, built-in)
• Erode Label (cli, bundled in Erode Dilate Label extension)
• Grayscale Grind Peak Image Filter (cli, built-in)
• Dilate Label (cli, bundled in Erode Dilate Label extension)

IGT

• Resection Volume (scripted, bundled in Resection Planner extension)
• Volume Reslice Driver (loadable, bundled in Slicer IGT extension)
• Collect Fiducials (loadable, bundled in Slicer IGT extension)
• Percutaneous Approach Analysis (scripted, bundled in Percutaneous Approach Analysis extension)
• Fiducials To Model Registration (scripted, bundled in Slicer IGT extension)
• Create Models (loadable, bundled in Slicer IGT extension)
• Port Placement (scripted, bundled in Port Placement extension)
• Open IGTLink IF (loadable, built-in)
• Tracker Stabilizer (loadable, bundled in Tracker Stabilizer extension)
• Path Explorer (loadable, bundled in Slicer IGT extension)
• Ultrasound Snapshots (loadable, bundled in Slicer IGT extension)
• Transform Fusion (loadable, bundled in Slicer IGT extension)
• Breach Warning (loadable, bundled in Slicer IGT extension)
• Gyro Guide (scripted, bundled in Gyro Guide extension)
• Fiducial Registration Wizard (loadable, bundled in Slicer IGT extension)
• Watchdog (loadable, bundled in Slicer IGT extension)
• Open IGTLink Remote (loadable, bundled in Slicer IGT extension)
• Plus Remote (scripted, bundled in Slicer IGT extension)
• i Gyne (scripted, bundled in i Gyne extension)
• Needle Finder (scripted, bundled in Needle Finder extension)
• Model Registration (scripted, bundled in Slicer IGT extension)
• Pivot Calibration (loadable, bundled in Slicer IGT extension)
• Corner Annotation (scripted, bundled in Corner Annotation extension)

Informatics

• Annotations (loadable, built-in)
• Markups (loadable, built-in)
• Units (loadable, built-in)
• DICOM (scripted, built-in)
• Sample Data (scripted, built-in)
• Subject Hierarchy (loadable, built-in)
• Data (loadable, built-in)
• Colors (loadable, built-in)
• Curve Maker (scripted, bundled in Curve Maker extension)
• TCIABrowser (scripted, bundled in TCIABrowser extension)

Legacy

Converters

• BSpline To Deformation Field (cli, built-in)

Diffusion

Denoising

• DWIUnbiased Non Local Means Filter (cli, built-in)

Diffusion Data Conversion

• DTIimport (cli, built-in)
• DTIexport (cli, built-in)

Filtering

• Otsu Threshold Image Filter (cli, built-in)
• Resample Scalar Volume (cli, built-in)

Registration

• Test Grid Transform Registration (cli, built-in)
• Expert Automated Registration (cli, built-in)

Work in Progress

Diffusion Tensor

Test

• Diffusion Tensor Test (cli, built-in)

Margin Calculator

• Synthetic RTDose (scripted, bundled in Margin Calculator extension)
• Motion Simulator Double Array (loadable, bundled in Margin Calculator extension)
• Dose Morphology (loadable, bundled in Margin Calculator extension)
• Margin Calculator (scripted, bundled in Margin Calculator extension)
• Dose Population Histogram (loadable, bundled in Margin Calculator extension)

Mesh Generation

• Cleaver CLI (cli, bundled in Cleaver Extension extension)

MeshGeneration

• Body Centric Cubic Mesh (cli, bundled in CBC 3D I2MConversion extension)
• Mesh Compression (cli, bundled in CBC 3D I2MConversion extension)

Microscopy

• Bin Shrink (cli, bundled in IASEM extension)
• Label Object Statistics (scripted, bundled in IASEM extension)
• Spacing Aware Curvature Diffusion (cli, bundled in IASEM extension)
• IASEMImport Series (cli, bundled in IASEM extension)
• IASEMImport (cli, bundled in IASEM extension)

Multidimensional data

• Metafile Importer (loadable, bundled in Multidim Data extension)
• Sequence Browser (loadable, bundled in Multidim Data extension)
• Sequences (loadable, bundled in Multidim Data extension)

MultiVolume Support

• Multi Volume Explorer (loadable, built-in)
• Multi Volume Importer (scripted, built-in)

Perk Tutor

• Python Metrics Calculator (scripted, bundled in Perk Tutor extension)
• Workflow Segmentation (loadable, bundled in Perk Tutor extension)
• Transform Recorder (loadable, bundled in Perk Tutor extension)
• Perk Evaluator (loadable, bundled in Perk Tutor extension)

Plastimatch

• Dicom Sro Export (scripted, bundled in Slicer RT extension)
• Plm Register (scripted, bundled in Slicer RT extension)

Registration

• plastimatch slicer bspline (cli, bundled in Slicer RT extension)
• plastimatch slicer landwarp (cli, bundled in Slicer RT extension)

Utilities

• Plastimatch Py (loadable, bundled in Slicer RT extension)

Quantification

• d Pet Brain Quantification (scripted, bundled in Pet Spect Analysis extension)
• Quantitative Indices CLI (cli, bundled in PET-Indi C extension)
• PETStandard Uptake Value Computation (cli, built-in)
• SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
• Spinal Curvature Measurement (scripted, bundled in Scoliosis extension)
• PETIndi C (scripted, bundled in PET-Indi C extension)
• Pk Modeling (cli, bundled in Pk Modeling extension)
• Quantitative Indices Tool (scripted, bundled in PET-Indi C extension)
• Heterogeneity CAD (scripted, bundled in Open CAD extension)
• PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
• Dice Computation (loadable, bundled in Dice Computation extension)
• Data Probe (scripted, built-in)

ChangeQuantification

• Intensity Difference Metric (cli, bundled in Change Tracker extension)

Radiotherapy

• Contour Comparison (loadable, bundled in Slicer RT extension)
• Dicom Rt Import (loadable, bundled in Slicer RT extension)
• Beams (loadable, bundled in Slicer RT extension)
• Dvh Comparison (scripted, bundled in Slicer RT extension)
• Isodose (loadable, bundled in Slicer RT extension)
• Contours (loadable, bundled in Slicer RT extension)
• Dose Accumulation (loadable, bundled in Slicer RT extension)
• Dicom Rt Export (loadable, bundled in Slicer RT extension)
• Dose Comparison (loadable, bundled in Slicer RT extension)
• Contour Morphology (loadable, bundled in Slicer RT extension)
• Dicom Sro Import (loadable, bundled in Slicer RT extension)
• Dose Volume Histogram (loadable, bundled in Slicer RT extension)
• Planar Image (loadable, bundled in Slicer RT extension)

Registration

• BRAINSResample (cli, built-in)
• Transforms (loadable, built-in)
• BRAINSResize (cli, built-in)
• BRAINSFit (cli, built-in)
• PBNRR (cli, bundled in PBNRR extension)
• Perform Metric Test (cli, built-in)

Specialized

• ACPCTransform (cli, built-in)
• Fiducial Registration (cli, built-in)
• VBRAINSDemon Warp (cli, built-in)
• BRAINSDemon Warp (cli, built-in)
• Reformat (loadable, built-in)

Segmentation

• Airway Segmentation (scripted, bundled in Airway Segmentation extension)
• IGR3D MABMIS Training (cli, bundled in MABMIS extension)
• ABC (cli, bundled in ABC extension)
• EMSegment Quick (loadable, built-in)
• Simple Region Growing Segmentation (cli, built-in)
• EMSegment (loadable, built-in)
• Volume Clip With Roi (scripted, bundled in Volume Clip extension)
• Segment CAD (scripted, bundled in Open CAD extension)
• Swiss Skull Stripper (cli, bundled in Swiss Skull Stripper extension)
• Airway Segmentation CLI (cli, bundled in Airway Segmentation extension)
• LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
• Sobolev Segmenter (cli, bundled in Sobolev Segmenter extension)
• Volume Clip With Model (scripted, bundled in Volume Clip extension)
• IGR3D MABMIS Testing (cli, bundled in MABMIS extension)
• Intensity Segmenter (cli, bundled in Intensity Segmenter extension)

Specialized

• EMSegment Command Line (cli, built-in)
• Robust Statistics Segmenter (cli, built-in)
• BRAINSROIAuto (cli, built-in)

Shape Analysis

• Mesh To Label Map (cli, bundled in Mesh To Label Map extension)
• Angle Planes (scripted, bundled in Angle Planes Extension extension)
• Model To Model Distance (cli, bundled in Model To Model Distance extension)
• Mesh Statistics (scripted, bundled in Mesh Statistics Extension extension)
• Easy Clip (scripted, bundled in Easy Clip extension)
• Pick And Paint (scripted, bundled in Pick And Paint Extension extension)
• Q3DC (scripted, bundled in Q3DC extension)

Slicelets

• Gel Dosimetry Analysis (scripted, bundled in Gel Dosimetry Analysis extension)
• Gel Dosimetry Analysis Algo (loadable, bundled in Gel Dosimetry Analysis extension)

Surface Models

• Model To Label Map (cli, built-in)
• Merge Models (cli, built-in)
• Surface Toolbox (scripted, built-in)
• Probe Volume With Model (cli, built-in)
• Model Maker (cli, built-in)
• Grayscale Model Maker (cli, built-in)
• Label Map Smoothing (cli, built-in)

Testing

• Self Tests
• CLIROITest (cli, built-in)
• CLI4Test
• Threshold Threading Test
• Scoliosis Monitoring (scripted, bundled in Scoliosis extension)
• Performance Tests
• Slicer MRBTest

IGT Tests

• Breach Warning Self Test
• Watchdog Self Test

SlicerRT Tests

• NAMIC Tutorial 2013June Self Test
• Dicom Rt Import Self Test
• Batch Contour Conversion (scripted, bundled in Slicer RT extension)

TestCases

• Slice Link Logic (scripted, built-in)
• Atlas Tests
• RSNAQuant Tutorial
• Volume Rendering Scene Close (scripted, built-in)
• test tractography display
• slicer Close Crash Bug2590
• Subject Hierarchy Generic Self Test
• Scene Performance (scripted, built-in)
• Charting (scripted, built-in)
• Neurosurgical Planning Tutorial Markups Self Test
• Markups In Compare Viewers Self Test
• Cardiac Agatston Measures (scripted, bundled in Cardiac Agatston Measures extension)
• fiber visibility crash2438
• scene Import2428
• RSNAVis Tutorial
• JRC2013Vis
• RSNA2012Prostate Demo
• Add Many Markups Fiducial Test
• Colors Scalar Bar Self Test
• Markups In Views Self Test
• Subject Hierarchy Core Plugins Self Test
• Change Tracker Self Test
• Fiducial Layout Switch Bug1914
• View Controllers Slice Interpolation Bug1926
• Slicer4Minute (scripted, built-in)
• label Toggle Bug2049

Unspecified

• BRAINSDWICleanup (cli, built-in)

Utilities

• Thingiverse Browser (scripted, bundled in Thingiverse Browser extension)
• BRAINSStrip Rotation (cli, built-in)
• EMSegment Transform To New Format (cli, built-in)
• Data Store (loadable, built-in)

BRAINS

• BRAINSTransform Convert (cli, built-in)

Vascular Modeling Toolkit

• Vesselness Filtering (scripted, bundled in VMTK extension)
• Centerline Computation (scripted, bundled in VMTK extension)
• Level Set Segmentation (scripted, bundled in VMTK extension)

Wizards

• Compare Volumes (scripted, bundled in CMFreg extension)
• Change Tracker (scripted, bundled in Change Tracker extension)

Work in Progress

• Longitudinal PETCT (loadable, bundled in Longitudinal PETCT extension)

Converters

• Label To DICOMSEGConverter (scripted, bundled in Reporting extension)

Informatics

• Reporting (loadable, bundled in Reporting extension)

TestCases

• Reporting Self Test
• Label To DICOMSEGConverter Self Test

Modules by name

231 modules:

• ABC (cli, bundled in ABC extension)
• ACPCTransform (cli, built-in)
• Add Scalar Volumes (cli, built-in)
• Airway Segmentation (scripted, bundled in Airway Segmentation extension)
• Airway Segmentation CLI (cli, bundled in Airway Segmentation extension)
• Angle Planes (scripted, bundled in Angle Planes Extension extension)
• Annotations (loadable, built-in)
• Apply Matrix (cli, bundled in CMFreg extension)
• Beams (loadable, bundled in Slicer RT extension)
• Bin Shrink (cli, bundled in IASEM extension)
• Body Centric Cubic Mesh (cli, bundled in CBC 3D I2MConversion extension)
• BRAINSDemon Warp (cli, built-in)
• BRAINSDWICleanup (cli, built-in)
• BRAINSFit (cli, built-in)
• BRAINSLabel Stats (cli, built-in)
• BRAINSResample (cli, built-in)
• BRAINSResize (cli, built-in)
• BRAINSROIAuto (cli, built-in)
• BRAINSStrip Rotation (cli, built-in)
• BRAINSTransform Convert (cli, built-in)
• Breach Warning (loadable, bundled in Slicer IGT extension)
• Carrera Slice (loadable, bundled in Carrera Slice extension)
• Cast Scalar Volume (cli, built-in)
• Centerline Computation (scripted, bundled in VMTK extension)
• Change Tracker (scripted, bundled in Change Tracker extension)
• Checker Board Filter (cli, built-in)
• Cleaver CLI (cli, bundled in Cleaver Extension extension)
• CMRToolkit Automatic Left Atrial Scar (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Axial Dilate (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Boolean REMOVEFilter (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Connected Threshold Filter (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Inhomogeneity Correction (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Isolated Connected Filter (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit PVAntrum Cut (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Registration (scripted, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Registration BRAINSFit (scripted, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Wizard (scripted, bundled in Cardiac MRI Toolkit extension)
• Collect Fiducials (loadable, bundled in Slicer IGT extension)
• Colors (loadable, built-in)
• Compare Volumes (scripted, bundled in CMFreg extension)
• Contour Comparison (loadable, bundled in Slicer RT extension)
• Contour Morphology (loadable, bundled in Slicer RT extension)
• Contours (loadable, bundled in Slicer RT extension)
• Convert VTK (cli, bundled in UKFTractography extension)
• Corner Annotation (scripted, bundled in Corner Annotation extension)
• Create DICOMSeries (cli, built-in)
• Create Models (loadable, bundled in Slicer IGT extension)
• Crop Volume (loadable, built-in)
• Curvature Anisotropic Diffusion (cli, built-in)
• Curve Maker (scripted, bundled in Curve Maker extension)
• Data (loadable, built-in)
• Data Probe (scripted, built-in)
• Data Store (loadable, built-in)
• Dice Computation (loadable, bundled in Dice Computation extension)
• DICOM (scripted, built-in)
• DICOM2Full Brain Tractography (scripted, built-in)
• Dicom Rt Export (loadable, bundled in Slicer RT extension)
• Dicom Rt Import (loadable, bundled in Slicer RT extension)
• Dicom Sro Export (scripted, bundled in Slicer RT extension)
• Dicom Sro Import (loadable, bundled in Slicer RT extension)
• Diffusion Tensor Scalar Measurements (cli, built-in)
• Diffusion Weighted Volume Masking (cli, built-in)
• Dilate Label (cli, bundled in Erode Dilate Label extension)
• Dose Accumulation (loadable, bundled in Slicer RT extension)
• Dose Comparison (loadable, bundled in Slicer RT extension)
• Dose Morphology (loadable, bundled in Margin Calculator extension)
• Dose Population Histogram (loadable, bundled in Margin Calculator extension)
• Dose Volume Histogram (loadable, bundled in Slicer RT extension)
• Downsize (cli, bundled in CMFreg extension)
• d Pet Brain Quantification (scripted, bundled in Pet Spect Analysis extension)
• DTIAtlas Fiber Analyzer (cli, bundled in DTIAtlas Fiber Analyzer extension)
• dtitractstat (cli, bundled in DTIAtlas Fiber Analyzer extension)
• Dvh Comparison (scripted, bundled in Slicer RT extension)
• DWIConvert (cli, built-in)
• DWIJoint Rician LMMSEFilter (cli, built-in)
• DWIRician LMMSEFilter (cli, built-in)
• DWITo DTIEstimation (cli, built-in)
• Easy Clip (scripted, bundled in Easy Clip extension)
• EMSegment (loadable, built-in)
• EMSegment Command Line (cli, built-in)
• EMSegment Quick (loadable, built-in)
• EMSegment Transform To New Format (cli, built-in)
• Endoscopy (scripted, built-in)
• Erode Label (cli, bundled in Erode Dilate Label extension)
• Extract Skeleton (cli, built-in)
• Fast Grow Cut (loadable, bundled in Fast Grow Cut Effect extension)
• Fast Grow Cut Segmenter (loadable, bundled in Carrera Slice extension)
• Fiber Bundle Label Select (cli, built-in)
• Fiber Bundle To Label Map (scripted, built-in)
• Fiber Compare (cli, bundled in DTIAtlas Fiber Analyzer extension)
• Fiducial Registration (cli, built-in)
• Fiducial Registration Wizard (loadable, bundled in Slicer IGT extension)
• Fiducials To Model Registration (scripted, bundled in Slicer IGT extension)
• Finsler Backtracing (cli, bundled in Finsler Tractography extension)
• Finsler Tractography (cli, bundled in Finsler Tractography extension)
• Gaussian Blur Image Filter (cli, built-in)
• Gel Dosimetry Analysis (scripted, bundled in Gel Dosimetry Analysis extension)
• Gel Dosimetry Analysis Algo (loadable, bundled in Gel Dosimetry Analysis extension)
• Gradient Anisotropic Diffusion (cli, built-in)
• Grayscale Fill Hole Image Filter (cli, built-in)
• Grayscale Grind Peak Image Filter (cli, built-in)
• Grayscale Model Maker (cli, built-in)
• Growing (cli, bundled in CMFreg extension)
• Gyro Guide (scripted, bundled in Gyro Guide extension)
• Heterogeneity CAD (scripted, bundled in Open CAD extension)
• Histogram Matching (cli, built-in)
• IASEMImport (cli, bundled in IASEM extension)
• IASEMImport Series (cli, bundled in IASEM extension)
• IGR3D MABMIS Testing (cli, bundled in MABMIS extension)
• IGR3D MABMIS Training (cli, bundled in MABMIS extension)
• i Gyne (scripted, bundled in i Gyne extension)
• Image Label Combine (cli, built-in)
• Intensity Difference Metric (cli, bundled in Change Tracker extension)
• Intensity Segmenter (cli, bundled in Intensity Segmenter extension)
• Isodose (loadable, bundled in Slicer RT extension)
• KUtil (scripted, bundled in Carrera Slice extension)
• Label Addition (cli, bundled in CMFreg extension)
• Label Extraction (cli, bundled in CMFreg extension)
• Label Map Smoothing (cli, built-in)
• Label Object Statistics (scripted, bundled in IASEM extension)
• Label To DICOMSEGConverter (scripted, bundled in Reporting extension)
• Landmark Registration (scripted, bundled in CMFreg extension)
• LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
• LASegmentation Workflow (scripted, bundled in Cardiac MRI Toolkit extension)
• Level Set Segmentation (scripted, bundled in VMTK extension)
• Longitudinal PETCT (loadable, bundled in Longitudinal PETCT extension)
• Margin Calculator (scripted, bundled in Margin Calculator extension)
• Markups (loadable, built-in)
• Mask Creation (cli, bundled in CMFreg extension)
• Mask Scalar Volume (cli, built-in)
• Median Image Filter (cli, built-in)
• Merge Models (cli, built-in)
• Merge Stat With Fiber (cli, bundled in DTIAtlas Fiber Analyzer extension)
• Mesh Compression (cli, bundled in CBC 3D I2MConversion extension)
• Mesh Statistics (scripted, bundled in Mesh Statistics Extension extension)
• Mesh To Label Map (cli, bundled in Mesh To Label Map extension)
• Metafile Importer (loadable, bundled in Multidim Data extension)
• Model Maker (cli, built-in)
• Model Registration (scripted, bundled in Slicer IGT extension)
• Models (loadable, built-in)
• Model To Label Map (cli, built-in)
• Model To Model Distance (cli, bundled in Model To Model Distance extension)
• Motion Simulator Double Array (loadable, bundled in Margin Calculator extension)
• Multiply Scalar Volumes (cli, built-in)
• Multi Volume Explorer (loadable, built-in)
• Multi Volume Importer (scripted, built-in)
• N4ITKBias Field Correction (cli, built-in)
• Needle Finder (scripted, bundled in Needle Finder extension)
• Non Growing (cli, bundled in CMFreg extension)
• Open IGTLink IF (loadable, built-in)
• Open IGTLink Remote (loadable, bundled in Slicer IGT extension)
• Orient Scalar Volume (cli, built-in)
• Path Explorer (loadable, bundled in Slicer IGT extension)
• PBNRR (cli, bundled in PBNRR extension)
• Percutaneous Approach Analysis (scripted, bundled in Percutaneous Approach Analysis extension)
• Perform Metric Test (cli, built-in)
• Perk Evaluator (loadable, bundled in Perk Tutor extension)
• PETIndi C (scripted, bundled in PET-Indi C extension)
• PETStandard Uptake Value Computation (cli, built-in)
• PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
• PETTumor Segmentation (loadable, bundled in PETTumor Segmentation extension)
• Pick And Paint (scripted, bundled in Pick And Paint Extension extension)
• Pivot Calibration (loadable, bundled in Slicer IGT extension)
• Pk Modeling (cli, bundled in Pk Modeling extension)
• Planar Image (loadable, bundled in Slicer RT extension)
• plastimatch slicer bspline (cli, bundled in Slicer RT extension)
• plastimatch slicer landwarp (cli, bundled in Slicer RT extension)
• Plastimatch Py (loadable, bundled in Slicer RT extension)
• Plm Register (scripted, bundled in Slicer RT extension)
• Plus Remote (scripted, bundled in Slicer IGT extension)
• Port Placement (scripted, bundled in Port Placement extension)
• Probe Volume With Model (cli, built-in)
• Python Metrics Calculator (scripted, bundled in Perk Tutor extension)
• Q3DC (scripted, bundled in Q3DC extension)
• Quantitative Indices CLI (cli, bundled in PET-Indi C extension)
• Quantitative Indices Tool (scripted, bundled in PET-Indi C extension)
• Reformat (loadable, built-in)
• Reporting (loadable, bundled in Reporting extension)
• Resample DTIlog Euclidean (cli, bundled in Resample DTIlog Euclidean extension)
• Resample DTIVolume (cli, built-in)
• Resample Scalar Vector DWIVolume (cli, built-in)
• Resection Volume (scripted, bundled in Resection Planner extension)
• Robust Statistics Segmenter (cli, built-in)
• Sample Data (scripted, built-in)
• Scar Visualization (scripted, bundled in Cardiac MRI Toolkit extension)
• Scene Views (loadable, built-in)
• Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)
• Segment CAD (scripted, bundled in Open CAD extension)
• Sequence Browser (loadable, bundled in Multidim Data extension)
• Sequences (loadable, bundled in Multidim Data extension)
• Simple Filters (scripted, built-in)
• Simple Region Growing Segmentation (cli, built-in)
• Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)
• Sobolev Segmenter (cli, bundled in Sobolev Segmenter extension)
• Spacing Aware Curvature Diffusion (cli, bundled in IASEM extension)
• Spinal Curvature Measurement (scripted, bundled in Scoliosis extension)
• Subject Hierarchy (loadable, built-in)
• Subtract Scalar Volumes (cli, built-in)
• Surface Registration (scripted, bundled in CMFreg extension)
• Surface Toolbox (scripted, built-in)
• SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
• Swiss Skull Stripper (cli, bundled in Swiss Skull Stripper extension)
• Synthetic RTDose (scripted, bundled in Margin Calculator extension)
• TCIABrowser (scripted, bundled in TCIABrowser extension)
• Thingiverse Browser (scripted, bundled in Thingiverse Browser extension)
• Threshold Scalar Volume (cli, built-in)
• Tracker Stabilizer (loadable, bundled in Tracker Stabilizer extension)
• Tractography Display (loadable, built-in)
• Tractography Interactive Seeding (loadable, built-in)
• Tractography Label Map Seeding (cli, built-in)
• Transform Fusion (loadable, bundled in Slicer IGT extension)
• Transform Recorder (loadable, bundled in Perk Tutor extension)
• Transforms (loadable, built-in)
• UKFTractography (cli, bundled in UKFTractography extension)
• Ultrasound Snapshots (loadable, bundled in Slicer IGT extension)
• Units (loadable, built-in)
• VBRAINSDemon Warp (cli, built-in)
• Vector To Scalar Volume (scripted, built-in)
• Vesselness Filtering (scripted, bundled in VMTK extension)
• Vff File Reader (loadable, bundled in Slicer RT extension)
• View Controllers (loadable, built-in)
• Volume Clip With Model (scripted, bundled in Volume Clip extension)
• Volume Clip With Roi (scripted, bundled in Volume Clip extension)
• Volume Rendering (loadable, built-in)
• Volume Reslice Driver (loadable, bundled in Slicer IGT extension)
• Volumes (loadable, built-in)
• Voting Binary Hole Filling Image Filter (cli, built-in)
• Watchdog (loadable, bundled in Slicer IGT extension)
• Welcome (loadable, built-in)
• Window Level Effect (scripted, bundled in Window Level Effect extension)
• Workflow Segmentation (loadable, bundled in Perk Tutor extension)