Difference between revisions of "Documentation/4.4/ModuleExtensionListing"
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** [[#Modules_by_category_BRAINS_LabelStatistics|Label Statistics]] | ** [[#Modules_by_category_BRAINS_LabelStatistics|Label Statistics]] | ||
* [[#Modules_by_category_Cardiac_MRI_Toolkit|Cardiac MRI Toolkit]] | * [[#Modules_by_category_Cardiac_MRI_Toolkit|Cardiac MRI Toolkit]] | ||
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* [[#Modules_by_category_Converters|Converters]] | * [[#Modules_by_category_Converters|Converters]] | ||
* [[#Modules_by_category_Developer_Tools|Developer Tools]] | * [[#Modules_by_category_Developer_Tools|Developer Tools]] | ||
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*** [[#Modules_by_category_Work_in_Progress_Diffusion_Tensor|Diffusion Tensor]] | *** [[#Modules_by_category_Work_in_Progress_Diffusion_Tensor|Diffusion Tensor]] | ||
**** [[#Modules_by_category_Diffusion_Tensor_Test|Test]] | **** [[#Modules_by_category_Diffusion_Tensor_Test|Test]] | ||
| + | * [[#Modules_by_category_Margin_Calculator|Margin Calculator]] | ||
* [[#Modules_by_category_Mesh_Generation|Mesh Generation]] | * [[#Modules_by_category_Mesh_Generation|Mesh Generation]] | ||
* [[#Modules_by_category_MeshGeneration|Mesh Generation]] | * [[#Modules_by_category_MeshGeneration|Mesh Generation]] | ||
| Line 58: | Line 57: | ||
** [[#Modules_by_category_Segmentation_Specialized|Specialized]] | ** [[#Modules_by_category_Segmentation_Specialized|Specialized]] | ||
* [[#Modules_by_category_Shape_Analysis|Shape Analysis]] | * [[#Modules_by_category_Shape_Analysis|Shape Analysis]] | ||
| + | ** [[#Modules_by_category_Shape_Analysis_CMF_Registration|CMF Registration]] | ||
| + | *** [[#Modules_by_category_CMF_Registration_Voxelbase_Registration|Voxelbase Registration]] | ||
* [[#Modules_by_category_Slicelets|Slicelets]] | * [[#Modules_by_category_Slicelets|Slicelets]] | ||
* [[#Modules_by_category_Surface_Models|Surface Models]] | * [[#Modules_by_category_Surface_Models|Surface Models]] | ||
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<span id='Modules_by_category_Cardiac_MRI_Toolkit'></span> | <span id='Modules_by_category_Cardiac_MRI_Toolkit'></span> | ||
== Cardiac MRI Toolkit == | == Cardiac MRI Toolkit == | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration] <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Connected Threshold Filter] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Connected Threshold Filter] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Isolated Connected Filter] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Isolated Connected Filter] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Wizard] <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Wizard] <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Axial Dilate] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Axial Dilate] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| − | |||
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit PVAntrum Cut] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit PVAntrum Cut] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
* [[Documentation/4.4/Modules/ScarVisualization|Scar Visualization]] <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | * [[Documentation/4.4/Modules/ScarVisualization|Scar Visualization]] <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| Line 90: | Line 91: | ||
* [[Documentation/4.4/Modules/LASegmentationWorkflow|LASegmentation Workflow]] <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | * [[Documentation/4.4/Modules/LASegmentationWorkflow|LASegmentation Workflow]] <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Automatic Left Atrial Scar] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Automatic Left Atrial Scar] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| − | |||
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration BRAINSFit] <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration BRAINSFit] <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| − | + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Inhomogeneity Correction] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | |
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| − | * [ | ||
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<span id='Modules_by_category_Converters'></span> | <span id='Modules_by_category_Converters'></span> | ||
== Converters == | == Converters == | ||
| Line 116: | Line 104: | ||
* [[Documentation/4.4/Modules/ExecutionModelTour|Execution Model Tour]] <small>(cli, built-in)</small> | * [[Documentation/4.4/Modules/ExecutionModelTour|Execution Model Tour]] <small>(cli, built-in)</small> | ||
* Double Arrays <small>(loadable, built-in)</small> | * Double Arrays <small>(loadable, built-in)</small> | ||
| − | |||
* [[Documentation/4.4/Modules/Cameras|Cameras]] <small>(loadable, built-in)</small> | * [[Documentation/4.4/Modules/Cameras|Cameras]] <small>(loadable, built-in)</small> | ||
| − | * [http://www.slicer.org/ | + | * [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/DeveloperToolsForExtensions Extension Stats] <small>(scripted, bundled in [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/DeveloperToolsForExtensions Developer Tools For Extensions] extension)</small> |
| + | * [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/DeveloperToolsForExtensions Developer Tools For Extensions] <small>(scripted, bundled in [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/DeveloperToolsForExtensions Developer Tools For Extensions] extension)</small> | ||
* [[Documentation/4.4/Modules/ExtensionWizard|Extension Wizard]] <small>(scripted, built-in)</small> | * [[Documentation/4.4/Modules/ExtensionWizard|Extension Wizard]] <small>(scripted, built-in)</small> | ||
* [[Documentation/4.4/Extensions/ImageMaker|Image Maker]] <small>(cli, bundled in [[Documentation/4.4/Extensions/ImageMaker|Image Maker]] extension)</small> | * [[Documentation/4.4/Extensions/ImageMaker|Image Maker]] <small>(cli, bundled in [[Documentation/4.4/Extensions/ImageMaker|Image Maker]] extension)</small> | ||
| Line 153: | Line 141: | ||
* [[Documentation/4.4/Modules/ResampleDTIVolume|Resample DTIVolume]] <small>(cli, built-in)</small> | * [[Documentation/4.4/Modules/ResampleDTIVolume|Resample DTIVolume]] <small>(cli, built-in)</small> | ||
* [[Documentation/4.4/Modules/DiffusionTensorScalarMeasurements|Diffusion Tensor Scalar Measurements]] <small>(cli, built-in)</small> | * [[Documentation/4.4/Modules/DiffusionTensorScalarMeasurements|Diffusion Tensor Scalar Measurements]] <small>(cli, built-in)</small> | ||
| − | * [http://www.slicer.org/ | + | * [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/ResampleDTIlogEuclidean Resample DTIlog Euclidean] <small>(cli, bundled in [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/ResampleDTIlogEuclidean Resample DTIlog Euclidean] extension)</small> |
* [[Documentation/4.4/Modules/TractographyLabelMapSeeding|Tractography Label Map Seeding]] <small>(cli, built-in)</small> | * [[Documentation/4.4/Modules/TractographyLabelMapSeeding|Tractography Label Map Seeding]] <small>(cli, built-in)</small> | ||
* Tractography Interactive Seeding <small>(loadable, built-in)</small> | * Tractography Interactive Seeding <small>(loadable, built-in)</small> | ||
| Line 174: | Line 162: | ||
=== Tractography === | === Tractography === | ||
* [[Documentation/4.4/Modules/FiberBundleToLabelMap|Fiber Bundle To Label Map]] <small>(scripted, built-in)</small> | * [[Documentation/4.4/Modules/FiberBundleToLabelMap|Fiber Bundle To Label Map]] <small>(scripted, built-in)</small> | ||
| + | * Fiber Bundle Label Select <small>(cli, built-in)</small> | ||
* [[Documentation/4.4/Modules/UKFTractography|UKFTractography]] <small>(cli, bundled in [[Documentation/4.4/Extensions/UKFTractography|UKFTractography]] extension)</small> | * [[Documentation/4.4/Modules/UKFTractography|UKFTractography]] <small>(cli, bundled in [[Documentation/4.4/Extensions/UKFTractography|UKFTractography]] extension)</small> | ||
| − | |||
<span id='Modules_by_category_Editor_Effects'></span> | <span id='Modules_by_category_Editor_Effects'></span> | ||
== Editor Effects == | == Editor Effects == | ||
| Line 187: | Line 175: | ||
<span id='Modules_by_category_Examples'></span> | <span id='Modules_by_category_Examples'></span> | ||
== Examples == | == Examples == | ||
| − | * [[Documentation/4.4/Modules/FastGrowCut|Fast Grow Cut]] <small>(loadable, bundled in [https://www.slicer.org/ | + | * [[Documentation/4.4/Modules/FastGrowCut|Fast Grow Cut]] <small>(loadable, bundled in [https://www.slicer.org/wiki/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect] extension)</small> |
| − | * [http://wiki.slicer.org/ | + | * [http://wiki.slicer.org/wiki/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Fast Grow Cut Segmenter] <small>(loadable, bundled in [http://wiki.slicer.org/wiki/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small> |
| − | * [[Documentation/4.4/Modules/SegmentationAidedRegistration|Segmentation Aided Registration]] <small>(cli, bundled in [http://www.slicer.org/ | + | * [[Documentation/4.4/Modules/SegmentationAidedRegistration|Segmentation Aided Registration]] <small>(cli, bundled in [http://www.slicer.org/wiki/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small> |
| − | * [http://wiki.slicer.org/ | + | * [http://wiki.slicer.org/wiki/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] <small>(loadable, bundled in [http://wiki.slicer.org/wiki/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small> |
<span id='Modules_by_category_Exporter'></span> | <span id='Modules_by_category_Exporter'></span> | ||
== Exporter == | == Exporter == | ||
| Line 200: | Line 188: | ||
== Filtering == | == Filtering == | ||
* [[Documentation/4.4/Modules/ExtractSkeleton|Extract Skeleton]] <small>(cli, built-in)</small> | * [[Documentation/4.4/Modules/ExtractSkeleton|Extract Skeleton]] <small>(cli, built-in)</small> | ||
| − | |||
* [[Documentation/4.4/Modules/N4ITKBiasFieldCorrection|N4ITKBias Field Correction]] <small>(cli, built-in)</small> | * [[Documentation/4.4/Modules/N4ITKBiasFieldCorrection|N4ITKBias Field Correction]] <small>(cli, built-in)</small> | ||
* [[Documentation/4.4/Modules/SimpleFilters|Simple Filters]] <small>(scripted, built-in)</small> | * [[Documentation/4.4/Modules/SimpleFilters|Simple Filters]] <small>(scripted, built-in)</small> | ||
| Line 207: | Line 194: | ||
* [[Documentation/4.4/Modules/HistogramMatching|Histogram Matching]] <small>(cli, built-in)</small> | * [[Documentation/4.4/Modules/HistogramMatching|Histogram Matching]] <small>(cli, built-in)</small> | ||
* [[Documentation/4.4/Modules/CheckerBoardFilter|Checker Board Filter]] <small>(cli, built-in)</small> | * [[Documentation/4.4/Modules/CheckerBoardFilter|Checker Board Filter]] <small>(cli, built-in)</small> | ||
| + | * [[Documentation/4.4/Modules/ThresholdScalarVolume|Threshold Scalar Volume]] <small>(cli, built-in)</small> | ||
<span id='Modules_by_category_Filtering_Arithmetic'></span> | <span id='Modules_by_category_Filtering_Arithmetic'></span> | ||
=== Arithmetic === | === Arithmetic === | ||
| Line 292: | Line 280: | ||
===== Test ===== | ===== Test ===== | ||
* Diffusion Tensor Test <small>(cli, built-in)</small> | * Diffusion Tensor Test <small>(cli, built-in)</small> | ||
| + | <span id='Modules_by_category_Margin_Calculator'></span> | ||
| + | == Margin Calculator == | ||
| + | * [[Documentation/4.4/Extensions/MarginCalculator|Synthetic RTDose]] <small>(scripted, bundled in [[Documentation/4.4/Extensions/MarginCalculator|Margin Calculator]] extension)</small> | ||
| + | * [[Documentation/4.4/Extensions/MarginCalculator|Motion Simulator Double Array]] <small>(loadable, bundled in [[Documentation/4.4/Extensions/MarginCalculator|Margin Calculator]] extension)</small> | ||
| + | * [[Documentation/4.4/Extensions/MarginCalculator|Dose Morphology]] <small>(loadable, bundled in [[Documentation/4.4/Extensions/MarginCalculator|Margin Calculator]] extension)</small> | ||
| + | * [[Documentation/4.4/Extensions/MarginCalculator|Margin Calculator]] <small>(scripted, bundled in [[Documentation/4.4/Extensions/MarginCalculator|Margin Calculator]] extension)</small> | ||
| + | * [[Documentation/4.4/Extensions/MarginCalculator|Dose Population Histogram]] <small>(loadable, bundled in [[Documentation/4.4/Extensions/MarginCalculator|Margin Calculator]] extension)</small> | ||
| + | * [[Documentation/4.4/Extensions/MarginCalculator|Motion Simulator]] <small>(loadable, bundled in [[Documentation/4.4/Extensions/MarginCalculator|Margin Calculator]] extension)</small> | ||
<span id='Modules_by_category_Mesh_Generation'></span> | <span id='Modules_by_category_Mesh_Generation'></span> | ||
== Mesh Generation == | == Mesh Generation == | ||
| Line 337: | Line 333: | ||
* [[Documentation/4.4/Modules/QuantitativeIndicesCLI|Quantitative Indices CLI]] <small>(cli, bundled in [[Documentation/4.4/Extensions/PET-IndiC|PET-Indi C]] extension)</small> | * [[Documentation/4.4/Modules/QuantitativeIndicesCLI|Quantitative Indices CLI]] <small>(cli, bundled in [[Documentation/4.4/Extensions/PET-IndiC|PET-Indi C]] extension)</small> | ||
* [[Documentation/4.4/Modules/PETStandardUptakeValueComputation|PETStandard Uptake Value Computation]] <small>(cli, built-in)</small> | * [[Documentation/4.4/Modules/PETStandardUptakeValueComputation|PETStandard Uptake Value Computation]] <small>(cli, built-in)</small> | ||
| − | * [[Documentation/4.4/Modules/SUVFactorCalculator|SUVFactor Calculator]] <small>(cli, bundled in [http://www.slicer.org/ | + | * [[Documentation/4.4/Modules/SUVFactorCalculator|SUVFactor Calculator]] <small>(cli, bundled in [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] extension)</small> |
* [[Documentation/4.4/Modules/SpinalCurvatureMeasurement|Spinal Curvature Measurement]] <small>(scripted, bundled in [[Documentation/4.4/Extensions/Scoliosis|Scoliosis]] extension)</small> | * [[Documentation/4.4/Modules/SpinalCurvatureMeasurement|Spinal Curvature Measurement]] <small>(scripted, bundled in [[Documentation/4.4/Extensions/Scoliosis|Scoliosis]] extension)</small> | ||
* [[Documentation/4.4/Extensions/PET-IndiC|PETIndi C]] <small>(scripted, bundled in [[Documentation/4.4/Extensions/PET-IndiC|PET-Indi C]] extension)</small> | * [[Documentation/4.4/Extensions/PET-IndiC|PETIndi C]] <small>(scripted, bundled in [[Documentation/4.4/Extensions/PET-IndiC|PET-Indi C]] extension)</small> | ||
* [[Documentation/4.4/Modules/PkModeling|Pk Modeling]] <small>(cli, bundled in [[Documentation/4.4/Extensions/PkModeling|Pk Modeling]] extension)</small> | * [[Documentation/4.4/Modules/PkModeling|Pk Modeling]] <small>(cli, bundled in [[Documentation/4.4/Extensions/PkModeling|Pk Modeling]] extension)</small> | ||
| + | * [[Documentation/4.4/Extensions/PET-IndiC|Quantitative Indices Tool]] <small>(scripted, bundled in [[Documentation/4.4/Extensions/PET-IndiC|PET-Indi C]] extension)</small> | ||
* [[Documentation/4.4/Modules/HeterogeneityCAD|Heterogeneity CAD]] <small>(scripted, bundled in [[Documentation/4.4/Extensions/OpenCAD|Open CAD]] extension)</small> | * [[Documentation/4.4/Modules/HeterogeneityCAD|Heterogeneity CAD]] <small>(scripted, bundled in [[Documentation/4.4/Extensions/OpenCAD|Open CAD]] extension)</small> | ||
* [[Documentation/4.4/Extensions/LongitudinalPETCT|PETSUVImage Maker]] <small>(cli, bundled in [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]] extension)</small> | * [[Documentation/4.4/Extensions/LongitudinalPETCT|PETSUVImage Maker]] <small>(cli, bundled in [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]] extension)</small> | ||
* [[Documentation/4.4/Modules/DiceComputation|Dice Computation]] <small>(loadable, bundled in [[Documentation/4.4/Extensions/DiceComputation|Dice Computation]] extension)</small> | * [[Documentation/4.4/Modules/DiceComputation|Dice Computation]] <small>(loadable, bundled in [[Documentation/4.4/Extensions/DiceComputation|Dice Computation]] extension)</small> | ||
* [[Documentation/4.4/Modules/DataProbe|Data Probe]] <small>(scripted, built-in)</small> | * [[Documentation/4.4/Modules/DataProbe|Data Probe]] <small>(scripted, built-in)</small> | ||
| − | |||
<span id='Modules_by_category_Quantification_ChangeQuantification'></span> | <span id='Modules_by_category_Quantification_ChangeQuantification'></span> | ||
=== ChangeQuantification === | === ChangeQuantification === | ||
| Line 361: | Line 357: | ||
* [[Documentation/4.4/Modules/DoseComparison|Dose Comparison]] <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small> | * [[Documentation/4.4/Modules/DoseComparison|Dose Comparison]] <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small> | ||
* [[Documentation/4.4/Modules/ContourMorphology|Contour Morphology]] <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small> | * [[Documentation/4.4/Modules/ContourMorphology|Contour Morphology]] <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small> | ||
| − | |||
* [[Documentation/4.4/Modules/DicomSroImport|Dicom Sro Import]] <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small> | * [[Documentation/4.4/Modules/DicomSroImport|Dicom Sro Import]] <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small> | ||
* [[Documentation/4.4/Modules/DoseVolumeHistogram|Dose Volume Histogram]] <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small> | * [[Documentation/4.4/Modules/DoseVolumeHistogram|Dose Volume Histogram]] <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small> | ||
| + | * [[Documentation/4.4/Extensions/SlicerRT|Planar Image]] <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small> | ||
<span id='Modules_by_category_Registration'></span> | <span id='Modules_by_category_Registration'></span> | ||
== Registration == | == Registration == | ||
| Line 369: | Line 365: | ||
* [[Documentation/4.4/Modules/Transforms|Transforms]] <small>(loadable, built-in)</small> | * [[Documentation/4.4/Modules/Transforms|Transforms]] <small>(loadable, built-in)</small> | ||
* BRAINSResize <small>(cli, built-in)</small> | * BRAINSResize <small>(cli, built-in)</small> | ||
| + | * [[Documentation/4.4/Modules/LandmarkRegistration|Landmark Registration]] <small>(scripted, built-in)</small> | ||
* [[Documentation/4.4/Modules/BRAINSFit|BRAINSFit]] <small>(cli, built-in)</small> | * [[Documentation/4.4/Modules/BRAINSFit|BRAINSFit]] <small>(cli, built-in)</small> | ||
* [[Documentation/4.4/Extensions/PBNRR|PBNRR]] <small>(cli, bundled in [[Documentation/4.4/Extensions/PBNRR|PBNRR]] extension)</small> | * [[Documentation/4.4/Extensions/PBNRR|PBNRR]] <small>(cli, bundled in [[Documentation/4.4/Extensions/PBNRR|PBNRR]] extension)</small> | ||
| Line 381: | Line 378: | ||
<span id='Modules_by_category_Segmentation'></span> | <span id='Modules_by_category_Segmentation'></span> | ||
== Segmentation == | == Segmentation == | ||
| + | * [[Documentation/4.4/Modules/AirwaySegmentation|Airway Segmentation]] <small>(scripted, bundled in [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation] extension)</small> | ||
* [[Documentation/4.4/Extensions/MABMIS|IGR3D MABMIS Training]] <small>(cli, bundled in [[Documentation/4.4/Extensions/MABMIS|MABMIS]] extension)</small> | * [[Documentation/4.4/Extensions/MABMIS|IGR3D MABMIS Training]] <small>(cli, bundled in [[Documentation/4.4/Extensions/MABMIS|MABMIS]] extension)</small> | ||
| − | * [ | + | * [https://github.com/Tomnl/Slicer-Wasp Wasp] <small>(scripted, bundled in [https://github.com/Tomnl/Slicer-Wasp Wasp] extension)</small> |
| + | * [[Documentation/4.4/Modules/ABC|ABC]] <small>(cli, bundled in [http://www.nitrc.org/projects/abc ABC] extension)</small> | ||
* EMSegment Quick <small>(loadable, built-in)</small> | * EMSegment Quick <small>(loadable, built-in)</small> | ||
* [[Documentation/4.4/Modules/SimpleRegionGrowingSegmentation|Simple Region Growing Segmentation]] <small>(cli, built-in)</small> | * [[Documentation/4.4/Modules/SimpleRegionGrowingSegmentation|Simple Region Growing Segmentation]] <small>(cli, built-in)</small> | ||
| Line 403: | Line 402: | ||
== Shape Analysis == | == Shape Analysis == | ||
* [[Documentation/4.4/Extensions/MeshToLabelMap|Mesh To Label Map]] <small>(cli, bundled in [[Documentation/4.4/Extensions/MeshToLabelMap|Mesh To Label Map]] extension)</small> | * [[Documentation/4.4/Extensions/MeshToLabelMap|Mesh To Label Map]] <small>(cli, bundled in [[Documentation/4.4/Extensions/MeshToLabelMap|Mesh To Label Map]] extension)</small> | ||
| − | * [http://www.slicer.org/ | + | * [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/AnglePlanes Angle Planes] <small>(scripted, bundled in [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/AnglePlanes Angle Planes Extension] extension)</small> |
| − | * [http://www.slicer.org/ | + | * [[Documentation/4.4/Extensions/ModelToModelDistance|Model To Model Distance]] <small>(cli, bundled in [[Documentation/4.4/Extensions/ModelToModelDistance|Model To Model Distance]] extension)</small> |
| − | * [ | + | * [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/MeshStatistics Mesh Statistics] <small>(scripted, bundled in [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/MeshStatistics Mesh Statistics Extension] extension)</small> |
| − | * [http://www.slicer.org/ | + | * [[Documentation/4.4/Extensions/EasyClip|Easy Clip]] <small>(scripted, bundled in [[Documentation/4.4/Extensions/EasyClip|Easy Clip]] extension)</small> |
| − | * [ | + | * [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/PickAndPaint Pick And Paint] <small>(scripted, bundled in [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/PickAndPaint Pick And Paint Extension] extension)</small> |
| + | * [[Documentation/4.4/Extensions/Q3DC|Q3DC]] <small>(scripted, bundled in [[Documentation/4.4/Extensions/Q3DC|Q3DC]] extension)</small> | ||
| + | <span id='Modules_by_category_Shape_Analysis_CMF_Registration'></span> | ||
| + | === CMF Registration === | ||
| + | * [[Documentation/4.4/Extensions/CMFreg|Apply Matrix]] <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small> | ||
| + | * [[Documentation/4.4/Modules/SurfaceRegistration|Surface Registration]] <small>(scripted, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small> | ||
| + | * [[Documentation/4.4/Modules/LabelExtraction|Label Extraction]] <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small> | ||
| + | * [[Documentation/4.4/Modules/LabelAddition|Label Addition]] <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small> | ||
| + | * [[Documentation/4.4/Modules/Downsize|Downsize]] <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small> | ||
| + | <span id='Modules_by_category_CMF_Registration_Voxelbase_Registration'></span> | ||
| + | ==== Voxelbase Registration ==== | ||
| + | * [[Documentation/4.4/Modules/MaskCreation|Mask Creation]] <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small> | ||
| + | * [[Documentation/4.4/Modules/NonGrowing|Non Growing]] <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small> | ||
| + | * [[Documentation/4.4/Modules/Growing|Growing]] <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small> | ||
<span id='Modules_by_category_Slicelets'></span> | <span id='Modules_by_category_Slicelets'></span> | ||
== Slicelets == | == Slicelets == | ||
| − | * [http://www.slicer.org/ | + | * [http://www.slicer.org/wiki/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] <small>(scripted, bundled in [http://www.slicer.org/wiki/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small> |
| − | * [http://www.slicer.org/ | + | * [http://www.slicer.org/wiki/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis Algo] <small>(loadable, bundled in [http://www.slicer.org/wiki/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small> |
<span id='Modules_by_category_Surface_Models'></span> | <span id='Modules_by_category_Surface_Models'></span> | ||
== Surface Models == | == Surface Models == | ||
| − | |||
* [[Documentation/4.4/Modules/ModelToLabelMap|Model To Label Map]] <small>(cli, built-in)</small> | * [[Documentation/4.4/Modules/ModelToLabelMap|Model To Label Map]] <small>(cli, built-in)</small> | ||
* [[Documentation/4.4/Modules/MergeModels|Merge Models]] <small>(cli, built-in)</small> | * [[Documentation/4.4/Modules/MergeModels|Merge Models]] <small>(cli, built-in)</small> | ||
| + | * [[Documentation/4.4/Modules/SurfaceToolbox|Surface Toolbox]] <small>(scripted, built-in)</small> | ||
* [[Documentation/4.4/Modules/ProbeVolumeWithModel|Probe Volume With Model]] <small>(cli, built-in)</small> | * [[Documentation/4.4/Modules/ProbeVolumeWithModel|Probe Volume With Model]] <small>(cli, built-in)</small> | ||
* [[Documentation/4.4/Modules/ModelMaker|Model Maker]] <small>(cli, built-in)</small> | * [[Documentation/4.4/Modules/ModelMaker|Model Maker]] <small>(cli, built-in)</small> | ||
| Line 448: | Line 460: | ||
* slicer Close Crash Bug2590 | * slicer Close Crash Bug2590 | ||
* Subject Hierarchy Generic Self Test | * Subject Hierarchy Generic Self Test | ||
| + | * Scene Performance <small>(scripted, built-in)</small> | ||
* Charting <small>(scripted, built-in)</small> | * Charting <small>(scripted, built-in)</small> | ||
| − | |||
* Neurosurgical Planning Tutorial Markups Self Test | * Neurosurgical Planning Tutorial Markups Self Test | ||
* Markups In Compare Viewers Self Test | * Markups In Compare Viewers Self Test | ||
| Line 486: | Line 498: | ||
<span id='Modules_by_category_Wizards'></span> | <span id='Modules_by_category_Wizards'></span> | ||
== Wizards == | == Wizards == | ||
| − | * [[Documentation/4.4/Modules/CompareVolumes|Compare Volumes]] <small>(scripted, | + | * [[Documentation/4.4/Modules/CompareVolumes|Compare Volumes]] <small>(scripted, built-in)</small> |
* [[Documentation/4.4/Modules/ChangeTracker|Change Tracker]] <small>(scripted, bundled in [[Documentation/4.4/Extensions/ChangeTracker|Change Tracker]] extension)</small> | * [[Documentation/4.4/Modules/ChangeTracker|Change Tracker]] <small>(scripted, bundled in [[Documentation/4.4/Extensions/ChangeTracker|Change Tracker]] extension)</small> | ||
<span id='Modules_by_category_Work_in_Progress'></span> | <span id='Modules_by_category_Work_in_Progress'></span> | ||
| Line 502: | Line 514: | ||
* Label To DICOMSEGConverter Self Test | * Label To DICOMSEGConverter Self Test | ||
= Modules by name = | = Modules by name = | ||
| − | + | 233 modules: | |
| − | * [ | + | * [[Documentation/4.4/Modules/ABC|ABC]] <small>(cli, bundled in [http://www.nitrc.org/projects/abc ABC] extension)</small> |
* [[Documentation/4.4/Modules/ACPCTransform|ACPCTransform]] <small>(cli, built-in)</small> | * [[Documentation/4.4/Modules/ACPCTransform|ACPCTransform]] <small>(cli, built-in)</small> | ||
* [[Documentation/4.4/Modules/AddScalarVolumes|Add Scalar Volumes]] <small>(cli, built-in)</small> | * [[Documentation/4.4/Modules/AddScalarVolumes|Add Scalar Volumes]] <small>(cli, built-in)</small> | ||
| + | * [[Documentation/4.4/Modules/AirwaySegmentation|Airway Segmentation]] <small>(scripted, bundled in [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation] extension)</small> | ||
* [[Documentation/4.4/Extensions/AirwaySegmentation|Airway Segmentation CLI]] <small>(cli, bundled in [[Documentation/4.4/Extensions/AirwaySegmentation|Airway Segmentation]] extension)</small> | * [[Documentation/4.4/Extensions/AirwaySegmentation|Airway Segmentation CLI]] <small>(cli, bundled in [[Documentation/4.4/Extensions/AirwaySegmentation|Airway Segmentation]] extension)</small> | ||
| − | * [http://www.slicer.org/ | + | * [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/AnglePlanes Angle Planes] <small>(scripted, bundled in [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/AnglePlanes Angle Planes Extension] extension)</small> |
* [[Documentation/4.4/Modules/Annotations|Annotations]] <small>(loadable, built-in)</small> | * [[Documentation/4.4/Modules/Annotations|Annotations]] <small>(loadable, built-in)</small> | ||
* [[Documentation/4.4/Extensions/CMFreg|Apply Matrix]] <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small> | * [[Documentation/4.4/Extensions/CMFreg|Apply Matrix]] <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small> | ||
| Line 523: | Line 536: | ||
* BRAINSTransform Convert <small>(cli, built-in)</small> | * BRAINSTransform Convert <small>(cli, built-in)</small> | ||
* [[Documentation/4.4/Extensions/SlicerIGT|Breach Warning]] <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small> | * [[Documentation/4.4/Extensions/SlicerIGT|Breach Warning]] <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small> | ||
| − | * [http://wiki.slicer.org/ | + | * [http://wiki.slicer.org/wiki/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] <small>(loadable, bundled in [http://wiki.slicer.org/wiki/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small> |
* [[Documentation/4.4/Modules/CastScalarVolume|Cast Scalar Volume]] <small>(cli, built-in)</small> | * [[Documentation/4.4/Modules/CastScalarVolume|Cast Scalar Volume]] <small>(cli, built-in)</small> | ||
* [http://slicer.vmtk.org/ Centerline Computation] <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small> | * [http://slicer.vmtk.org/ Centerline Computation] <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small> | ||
| Line 541: | Line 554: | ||
* [[Documentation/4.4/Modules/CollectFiducials|Collect Fiducials]] <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small> | * [[Documentation/4.4/Modules/CollectFiducials|Collect Fiducials]] <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small> | ||
* [[Documentation/4.4/Modules/Colors|Colors]] <small>(loadable, built-in)</small> | * [[Documentation/4.4/Modules/Colors|Colors]] <small>(loadable, built-in)</small> | ||
| − | * [[Documentation/4.4/Modules/CompareVolumes|Compare Volumes]] <small>(scripted, | + | * [[Documentation/4.4/Modules/CompareVolumes|Compare Volumes]] <small>(scripted, built-in)</small> |
* [[Documentation/4.4/Modules/ContourComparison|Contour Comparison]] <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small> | * [[Documentation/4.4/Modules/ContourComparison|Contour Comparison]] <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small> | ||
* [[Documentation/4.4/Modules/ContourMorphology|Contour Morphology]] <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small> | * [[Documentation/4.4/Modules/ContourMorphology|Contour Morphology]] <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small> | ||
| Line 567: | Line 580: | ||
* [[Documentation/4.4/Modules/DoseAccumulation|Dose Accumulation]] <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small> | * [[Documentation/4.4/Modules/DoseAccumulation|Dose Accumulation]] <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small> | ||
* [[Documentation/4.4/Modules/DoseComparison|Dose Comparison]] <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small> | * [[Documentation/4.4/Modules/DoseComparison|Dose Comparison]] <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small> | ||
| + | * [[Documentation/4.4/Extensions/MarginCalculator|Dose Morphology]] <small>(loadable, bundled in [[Documentation/4.4/Extensions/MarginCalculator|Margin Calculator]] extension)</small> | ||
| + | * [[Documentation/4.4/Extensions/MarginCalculator|Dose Population Histogram]] <small>(loadable, bundled in [[Documentation/4.4/Extensions/MarginCalculator|Margin Calculator]] extension)</small> | ||
* [[Documentation/4.4/Modules/DoseVolumeHistogram|Dose Volume Histogram]] <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small> | * [[Documentation/4.4/Modules/DoseVolumeHistogram|Dose Volume Histogram]] <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small> | ||
* [[Documentation/4.4/Modules/Downsize|Downsize]] <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small> | * [[Documentation/4.4/Modules/Downsize|Downsize]] <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small> | ||
| Line 577: | Line 592: | ||
* [[Documentation/4.4/Modules/DWIRicianLMMSEFilter|DWIRician LMMSEFilter]] <small>(cli, built-in)</small> | * [[Documentation/4.4/Modules/DWIRicianLMMSEFilter|DWIRician LMMSEFilter]] <small>(cli, built-in)</small> | ||
* [[Documentation/4.4/Modules/DWIToDTIEstimation|DWITo DTIEstimation]] <small>(cli, built-in)</small> | * [[Documentation/4.4/Modules/DWIToDTIEstimation|DWITo DTIEstimation]] <small>(cli, built-in)</small> | ||
| − | * [ | + | * [[Documentation/4.4/Extensions/EasyClip|Easy Clip]] <small>(scripted, bundled in [[Documentation/4.4/Extensions/EasyClip|Easy Clip]] extension)</small> |
* [[Documentation/4.4/Modules/EMSegment|EMSegment]] <small>(loadable, built-in)</small> | * [[Documentation/4.4/Modules/EMSegment|EMSegment]] <small>(loadable, built-in)</small> | ||
* EMSegment Command Line <small>(cli, built-in)</small> | * EMSegment Command Line <small>(cli, built-in)</small> | ||
| Line 585: | Line 600: | ||
* [[Documentation/4.4/Extensions/ErodeDilateLabel|Erode Label]] <small>(cli, bundled in [[Documentation/4.4/Extensions/ErodeDilateLabel|Erode Dilate Label]] extension)</small> | * [[Documentation/4.4/Extensions/ErodeDilateLabel|Erode Label]] <small>(cli, bundled in [[Documentation/4.4/Extensions/ErodeDilateLabel|Erode Dilate Label]] extension)</small> | ||
* [[Documentation/4.4/Modules/ExtractSkeleton|Extract Skeleton]] <small>(cli, built-in)</small> | * [[Documentation/4.4/Modules/ExtractSkeleton|Extract Skeleton]] <small>(cli, built-in)</small> | ||
| − | * [[Documentation/4.4/Modules/FastGrowCut|Fast Grow Cut]] <small>(loadable, bundled in [https://www.slicer.org/ | + | * [[Documentation/4.4/Modules/FastGrowCut|Fast Grow Cut]] <small>(loadable, bundled in [https://www.slicer.org/wiki/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect] extension)</small> |
| − | * [http://wiki.slicer.org/ | + | * [http://wiki.slicer.org/wiki/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Fast Grow Cut Segmenter] <small>(loadable, bundled in [http://wiki.slicer.org/wiki/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small> |
* Fiber Bundle Label Select <small>(cli, built-in)</small> | * Fiber Bundle Label Select <small>(cli, built-in)</small> | ||
* [[Documentation/4.4/Modules/FiberBundleToLabelMap|Fiber Bundle To Label Map]] <small>(scripted, built-in)</small> | * [[Documentation/4.4/Modules/FiberBundleToLabelMap|Fiber Bundle To Label Map]] <small>(scripted, built-in)</small> | ||
| Line 596: | Line 611: | ||
* [[Documentation/4.4/Modules/FinslerTractography|Finsler Tractography]] <small>(cli, bundled in [[Documentation/4.4/Extensions/FinslerTractography|Finsler Tractography]] extension)</small> | * [[Documentation/4.4/Modules/FinslerTractography|Finsler Tractography]] <small>(cli, bundled in [[Documentation/4.4/Extensions/FinslerTractography|Finsler Tractography]] extension)</small> | ||
* [[Documentation/4.4/Modules/GaussianBlurImageFilter|Gaussian Blur Image Filter]] <small>(cli, built-in)</small> | * [[Documentation/4.4/Modules/GaussianBlurImageFilter|Gaussian Blur Image Filter]] <small>(cli, built-in)</small> | ||
| − | * [http://www.slicer.org/ | + | * [http://www.slicer.org/wiki/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] <small>(scripted, bundled in [http://www.slicer.org/wiki/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small> |
| − | * [http://www.slicer.org/ | + | * [http://www.slicer.org/wiki/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis Algo] <small>(loadable, bundled in [http://www.slicer.org/wiki/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small> |
* [[Documentation/4.4/Modules/GradientAnisotropicDiffusion|Gradient Anisotropic Diffusion]] <small>(cli, built-in)</small> | * [[Documentation/4.4/Modules/GradientAnisotropicDiffusion|Gradient Anisotropic Diffusion]] <small>(cli, built-in)</small> | ||
* [[Documentation/4.4/Modules/GrayscaleFillHoleImageFilter|Grayscale Fill Hole Image Filter]] <small>(cli, built-in)</small> | * [[Documentation/4.4/Modules/GrayscaleFillHoleImageFilter|Grayscale Fill Hole Image Filter]] <small>(cli, built-in)</small> | ||
| Line 615: | Line 630: | ||
* [[Documentation/4.4/Extensions/IntensitySegmenter|Intensity Segmenter]] <small>(cli, bundled in [[Documentation/4.4/Extensions/IntensitySegmenter|Intensity Segmenter]] extension)</small> | * [[Documentation/4.4/Extensions/IntensitySegmenter|Intensity Segmenter]] <small>(cli, bundled in [[Documentation/4.4/Extensions/IntensitySegmenter|Intensity Segmenter]] extension)</small> | ||
* [[Documentation/4.4/Modules/Isodose|Isodose]] <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small> | * [[Documentation/4.4/Modules/Isodose|Isodose]] <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small> | ||
| − | * [http://wiki.slicer.org/ | + | * [http://wiki.slicer.org/wiki/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter KUtil] <small>(scripted, bundled in [http://wiki.slicer.org/wiki/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small> |
* [[Documentation/4.4/Modules/LabelAddition|Label Addition]] <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small> | * [[Documentation/4.4/Modules/LabelAddition|Label Addition]] <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small> | ||
* [[Documentation/4.4/Modules/LabelExtraction|Label Extraction]] <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small> | * [[Documentation/4.4/Modules/LabelExtraction|Label Extraction]] <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small> | ||
| Line 621: | Line 636: | ||
* [[Documentation/4.4/Extensions/IASEM|Label Object Statistics]] <small>(scripted, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small> | * [[Documentation/4.4/Extensions/IASEM|Label Object Statistics]] <small>(scripted, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small> | ||
* [[Documentation/4.4/Extensions/Reporting|Label To DICOMSEGConverter]] <small>(scripted, bundled in [[Documentation/4.4/Extensions/Reporting|Reporting]] extension)</small> | * [[Documentation/4.4/Extensions/Reporting|Label To DICOMSEGConverter]] <small>(scripted, bundled in [[Documentation/4.4/Extensions/Reporting|Reporting]] extension)</small> | ||
| − | * [[Documentation/4.4/Modules/LandmarkRegistration|Landmark Registration]] <small>(scripted, | + | * [[Documentation/4.4/Modules/LandmarkRegistration|Landmark Registration]] <small>(scripted, built-in)</small> |
* [[Documentation/4.4/Modules/LAScarSegmenter|LAScar Segmenter]] <small>(cli, bundled in [[Documentation/4.4/Extensions/LAScarSegmenter|LAScar Segmenter]] extension)</small> | * [[Documentation/4.4/Modules/LAScarSegmenter|LAScar Segmenter]] <small>(cli, bundled in [[Documentation/4.4/Extensions/LAScarSegmenter|LAScar Segmenter]] extension)</small> | ||
* [[Documentation/4.4/Modules/LASegmentationWorkflow|LASegmentation Workflow]] <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | * [[Documentation/4.4/Modules/LASegmentationWorkflow|LASegmentation Workflow]] <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
* [http://slicer.vmtk.org/ Level Set Segmentation] <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small> | * [http://slicer.vmtk.org/ Level Set Segmentation] <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small> | ||
* [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]] <small>(loadable, bundled in [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]] extension)</small> | * [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]] <small>(loadable, bundled in [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]] extension)</small> | ||
| + | * [[Documentation/4.4/Extensions/MarginCalculator|Margin Calculator]] <small>(scripted, bundled in [[Documentation/4.4/Extensions/MarginCalculator|Margin Calculator]] extension)</small> | ||
* [[Documentation/4.4/Modules/Markups|Markups]] <small>(loadable, built-in)</small> | * [[Documentation/4.4/Modules/Markups|Markups]] <small>(loadable, built-in)</small> | ||
* [[Documentation/4.4/Modules/MaskCreation|Mask Creation]] <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small> | * [[Documentation/4.4/Modules/MaskCreation|Mask Creation]] <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small> | ||
| Line 633: | Line 649: | ||
* [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|Merge Stat With Fiber]] <small>(cli, bundled in [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small> | * [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|Merge Stat With Fiber]] <small>(cli, bundled in [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small> | ||
* [[Documentation/4.4/Modules/MeshCompression|Mesh Compression]] <small>(cli, bundled in [[Documentation/4.4/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]] extension)</small> | * [[Documentation/4.4/Modules/MeshCompression|Mesh Compression]] <small>(cli, bundled in [[Documentation/4.4/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]] extension)</small> | ||
| − | * [http://www.slicer.org/ | + | * [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/MeshStatistics Mesh Statistics] <small>(scripted, bundled in [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/MeshStatistics Mesh Statistics Extension] extension)</small> |
* [[Documentation/4.4/Extensions/MeshToLabelMap|Mesh To Label Map]] <small>(cli, bundled in [[Documentation/4.4/Extensions/MeshToLabelMap|Mesh To Label Map]] extension)</small> | * [[Documentation/4.4/Extensions/MeshToLabelMap|Mesh To Label Map]] <small>(cli, bundled in [[Documentation/4.4/Extensions/MeshToLabelMap|Mesh To Label Map]] extension)</small> | ||
* [[Documentation/4.4/Extensions/MultidimData|Metafile Importer]] <small>(loadable, bundled in [[Documentation/4.4/Extensions/MultidimData|Multidim Data]] extension)</small> | * [[Documentation/4.4/Extensions/MultidimData|Metafile Importer]] <small>(loadable, bundled in [[Documentation/4.4/Extensions/MultidimData|Multidim Data]] extension)</small> | ||
| Line 640: | Line 656: | ||
* [[Documentation/4.4/Modules/Models|Models]] <small>(loadable, built-in)</small> | * [[Documentation/4.4/Modules/Models|Models]] <small>(loadable, built-in)</small> | ||
* [[Documentation/4.4/Modules/ModelToLabelMap|Model To Label Map]] <small>(cli, built-in)</small> | * [[Documentation/4.4/Modules/ModelToLabelMap|Model To Label Map]] <small>(cli, built-in)</small> | ||
| + | * [[Documentation/4.4/Extensions/ModelToModelDistance|Model To Model Distance]] <small>(cli, bundled in [[Documentation/4.4/Extensions/ModelToModelDistance|Model To Model Distance]] extension)</small> | ||
| + | * [[Documentation/4.4/Extensions/MarginCalculator|Motion Simulator]] <small>(loadable, bundled in [[Documentation/4.4/Extensions/MarginCalculator|Margin Calculator]] extension)</small> | ||
| + | * [[Documentation/4.4/Extensions/MarginCalculator|Motion Simulator Double Array]] <small>(loadable, bundled in [[Documentation/4.4/Extensions/MarginCalculator|Margin Calculator]] extension)</small> | ||
* [[Documentation/4.4/Modules/MultiplyScalarVolumes|Multiply Scalar Volumes]] <small>(cli, built-in)</small> | * [[Documentation/4.4/Modules/MultiplyScalarVolumes|Multiply Scalar Volumes]] <small>(cli, built-in)</small> | ||
* [[Documentation/4.4/Modules/MultiVolumeExplorer|Multi Volume Explorer]] <small>(loadable, built-in)</small> | * [[Documentation/4.4/Modules/MultiVolumeExplorer|Multi Volume Explorer]] <small>(loadable, built-in)</small> | ||
| Line 658: | Line 677: | ||
* [[Documentation/4.4/Extensions/LongitudinalPETCT|PETSUVImage Maker]] <small>(cli, bundled in [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]] extension)</small> | * [[Documentation/4.4/Extensions/LongitudinalPETCT|PETSUVImage Maker]] <small>(cli, bundled in [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]] extension)</small> | ||
* [[Documentation/4.4/Extensions/PETTumorSegmentation|PETTumor Segmentation]] <small>(loadable, bundled in [[Documentation/4.4/Extensions/PETTumorSegmentation|PETTumor Segmentation]] extension)</small> | * [[Documentation/4.4/Extensions/PETTumorSegmentation|PETTumor Segmentation]] <small>(loadable, bundled in [[Documentation/4.4/Extensions/PETTumorSegmentation|PETTumor Segmentation]] extension)</small> | ||
| − | * [http://www.slicer.org/ | + | * [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/PickAndPaint Pick And Paint] <small>(scripted, bundled in [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/PickAndPaint Pick And Paint Extension] extension)</small> |
* [[Documentation/4.4/Extensions/SlicerIGT|Pivot Calibration]] <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small> | * [[Documentation/4.4/Extensions/SlicerIGT|Pivot Calibration]] <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small> | ||
* [[Documentation/4.4/Modules/PkModeling|Pk Modeling]] <small>(cli, bundled in [[Documentation/4.4/Extensions/PkModeling|Pk Modeling]] extension)</small> | * [[Documentation/4.4/Modules/PkModeling|Pk Modeling]] <small>(cli, bundled in [[Documentation/4.4/Extensions/PkModeling|Pk Modeling]] extension)</small> | ||
| Line 670: | Line 689: | ||
* [[Documentation/4.4/Modules/ProbeVolumeWithModel|Probe Volume With Model]] <small>(cli, built-in)</small> | * [[Documentation/4.4/Modules/ProbeVolumeWithModel|Probe Volume With Model]] <small>(cli, built-in)</small> | ||
* [[Documentation/4.4/Extensions/PerkTutor|Python Metrics Calculator]] <small>(scripted, bundled in [[Documentation/4.4/Extensions/PerkTutor|Perk Tutor]] extension)</small> | * [[Documentation/4.4/Extensions/PerkTutor|Python Metrics Calculator]] <small>(scripted, bundled in [[Documentation/4.4/Extensions/PerkTutor|Perk Tutor]] extension)</small> | ||
| − | * [ | + | * [[Documentation/4.4/Extensions/Q3DC|Q3DC]] <small>(scripted, bundled in [[Documentation/4.4/Extensions/Q3DC|Q3DC]] extension)</small> |
* [[Documentation/4.4/Modules/QuantitativeIndicesCLI|Quantitative Indices CLI]] <small>(cli, bundled in [[Documentation/4.4/Extensions/PET-IndiC|PET-Indi C]] extension)</small> | * [[Documentation/4.4/Modules/QuantitativeIndicesCLI|Quantitative Indices CLI]] <small>(cli, bundled in [[Documentation/4.4/Extensions/PET-IndiC|PET-Indi C]] extension)</small> | ||
* [[Documentation/4.4/Extensions/PET-IndiC|Quantitative Indices Tool]] <small>(scripted, bundled in [[Documentation/4.4/Extensions/PET-IndiC|PET-Indi C]] extension)</small> | * [[Documentation/4.4/Extensions/PET-IndiC|Quantitative Indices Tool]] <small>(scripted, bundled in [[Documentation/4.4/Extensions/PET-IndiC|PET-Indi C]] extension)</small> | ||
* [[Documentation/4.4/Modules/Reformat|Reformat]] <small>(loadable, built-in)</small> | * [[Documentation/4.4/Modules/Reformat|Reformat]] <small>(loadable, built-in)</small> | ||
* [[Documentation/4.4/Extensions/Reporting|Reporting]] <small>(loadable, bundled in [[Documentation/4.4/Extensions/Reporting|Reporting]] extension)</small> | * [[Documentation/4.4/Extensions/Reporting|Reporting]] <small>(loadable, bundled in [[Documentation/4.4/Extensions/Reporting|Reporting]] extension)</small> | ||
| − | * [http://www.slicer.org/ | + | * [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/ResampleDTIlogEuclidean Resample DTIlog Euclidean] <small>(cli, bundled in [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/ResampleDTIlogEuclidean Resample DTIlog Euclidean] extension)</small> |
* [[Documentation/4.4/Modules/ResampleDTIVolume|Resample DTIVolume]] <small>(cli, built-in)</small> | * [[Documentation/4.4/Modules/ResampleDTIVolume|Resample DTIVolume]] <small>(cli, built-in)</small> | ||
* [[Documentation/4.4/Modules/ResampleScalarVectorDWIVolume|Resample Scalar Vector DWIVolume]] <small>(cli, built-in)</small> | * [[Documentation/4.4/Modules/ResampleScalarVectorDWIVolume|Resample Scalar Vector DWIVolume]] <small>(cli, built-in)</small> | ||
| Line 683: | Line 702: | ||
* [[Documentation/4.4/Modules/ScarVisualization|Scar Visualization]] <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | * [[Documentation/4.4/Modules/ScarVisualization|Scar Visualization]] <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
* [[Documentation/4.4/Modules/SceneViews|Scene Views]] <small>(loadable, built-in)</small> | * [[Documentation/4.4/Modules/SceneViews|Scene Views]] <small>(loadable, built-in)</small> | ||
| − | * [[Documentation/4.4/Modules/SegmentationAidedRegistration|Segmentation Aided Registration]] <small>(cli, bundled in [http://www.slicer.org/ | + | * [[Documentation/4.4/Modules/SegmentationAidedRegistration|Segmentation Aided Registration]] <small>(cli, bundled in [http://www.slicer.org/wiki/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small> |
* [[Documentation/4.4/Modules/SegmentCAD|Segment CAD]] <small>(scripted, bundled in [[Documentation/4.4/Extensions/OpenCAD|Open CAD]] extension)</small> | * [[Documentation/4.4/Modules/SegmentCAD|Segment CAD]] <small>(scripted, bundled in [[Documentation/4.4/Extensions/OpenCAD|Open CAD]] extension)</small> | ||
* [[Documentation/4.4/Extensions/MultidimData|Sequence Browser]] <small>(loadable, bundled in [[Documentation/4.4/Extensions/MultidimData|Multidim Data]] extension)</small> | * [[Documentation/4.4/Extensions/MultidimData|Sequence Browser]] <small>(loadable, bundled in [[Documentation/4.4/Extensions/MultidimData|Multidim Data]] extension)</small> | ||
| Line 695: | Line 714: | ||
* [[Documentation/4.4/Modules/SubjectHierarchy|Subject Hierarchy]] <small>(loadable, built-in)</small> | * [[Documentation/4.4/Modules/SubjectHierarchy|Subject Hierarchy]] <small>(loadable, built-in)</small> | ||
* [[Documentation/4.4/Modules/SubtractScalarVolumes|Subtract Scalar Volumes]] <small>(cli, built-in)</small> | * [[Documentation/4.4/Modules/SubtractScalarVolumes|Subtract Scalar Volumes]] <small>(cli, built-in)</small> | ||
| − | * [[Documentation/4.4/ | + | * [[Documentation/4.4/Modules/SurfaceRegistration|Surface Registration]] <small>(scripted, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small> |
* [[Documentation/4.4/Modules/SurfaceToolbox|Surface Toolbox]] <small>(scripted, built-in)</small> | * [[Documentation/4.4/Modules/SurfaceToolbox|Surface Toolbox]] <small>(scripted, built-in)</small> | ||
| − | * [[Documentation/4.4/Modules/SUVFactorCalculator|SUVFactor Calculator]] <small>(cli, bundled in [http://www.slicer.org/ | + | * [[Documentation/4.4/Modules/SUVFactorCalculator|SUVFactor Calculator]] <small>(cli, bundled in [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] extension)</small> |
* [[Documentation/4.4/Modules/SwissSkullStripper|Swiss Skull Stripper]] <small>(cli, bundled in [[Documentation/4.4/Extensions/SwissSkullStripper|Swiss Skull Stripper]] extension)</small> | * [[Documentation/4.4/Modules/SwissSkullStripper|Swiss Skull Stripper]] <small>(cli, bundled in [[Documentation/4.4/Extensions/SwissSkullStripper|Swiss Skull Stripper]] extension)</small> | ||
| + | * [[Documentation/4.4/Extensions/MarginCalculator|Synthetic RTDose]] <small>(scripted, bundled in [[Documentation/4.4/Extensions/MarginCalculator|Margin Calculator]] extension)</small> | ||
* [[Documentation/4.4/Extensions/TCIABrowser|TCIABrowser]] <small>(scripted, bundled in [[Documentation/4.4/Extensions/TCIABrowser|TCIABrowser]] extension)</small> | * [[Documentation/4.4/Extensions/TCIABrowser|TCIABrowser]] <small>(scripted, bundled in [[Documentation/4.4/Extensions/TCIABrowser|TCIABrowser]] extension)</small> | ||
* [[Documentation/4.4/Modules/ThingiverseBrowser|Thingiverse Browser]] <small>(scripted, bundled in [[Documentation/4.4/Extensions/ThingiverseBrowser|Thingiverse Browser]] extension)</small> | * [[Documentation/4.4/Modules/ThingiverseBrowser|Thingiverse Browser]] <small>(scripted, bundled in [[Documentation/4.4/Extensions/ThingiverseBrowser|Thingiverse Browser]] extension)</small> | ||
| Line 723: | Line 743: | ||
* [[Documentation/4.4/Modules/Volumes|Volumes]] <small>(loadable, built-in)</small> | * [[Documentation/4.4/Modules/Volumes|Volumes]] <small>(loadable, built-in)</small> | ||
* [[Documentation/4.4/Modules/VotingBinaryHoleFillingImageFilter|Voting Binary Hole Filling Image Filter]] <small>(cli, built-in)</small> | * [[Documentation/4.4/Modules/VotingBinaryHoleFillingImageFilter|Voting Binary Hole Filling Image Filter]] <small>(cli, built-in)</small> | ||
| + | * [https://github.com/Tomnl/Slicer-Wasp Wasp] <small>(scripted, bundled in [https://github.com/Tomnl/Slicer-Wasp Wasp] extension)</small> | ||
* [[Documentation/4.4/Extensions/SlicerIGT|Watchdog]] <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small> | * [[Documentation/4.4/Extensions/SlicerIGT|Watchdog]] <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small> | ||
* [[Documentation/4.4/Modules/Welcome|Welcome]] <small>(loadable, built-in)</small> | * [[Documentation/4.4/Modules/Welcome|Welcome]] <small>(loadable, built-in)</small> | ||
* [[Documentation/4.4/Extensions/WindowLevelEffect|Window Level Effect]] <small>(scripted, bundled in [[Documentation/4.4/Extensions/WindowLevelEffect|Window Level Effect]] extension)</small> | * [[Documentation/4.4/Extensions/WindowLevelEffect|Window Level Effect]] <small>(scripted, bundled in [[Documentation/4.4/Extensions/WindowLevelEffect|Window Level Effect]] extension)</small> | ||
* [[Documentation/4.4/Modules/WorkflowSegmentation|Workflow Segmentation]] <small>(loadable, bundled in [[Documentation/4.4/Extensions/PerkTutor|Perk Tutor]] extension)</small> | * [[Documentation/4.4/Modules/WorkflowSegmentation|Workflow Segmentation]] <small>(loadable, bundled in [[Documentation/4.4/Extensions/PerkTutor|Perk Tutor]] extension)</small> | ||
Latest revision as of 17:32, 21 November 2019
Home < Documentation < 4.4 < ModuleExtensionListing
- Modules by category
- Modules by name
- Modules by contributing organization
- Modules by contributing individual
- Modules by type
- Modules by extension
- Extensions by category
- Extensions by name
- Extensions by contributing organization
- Extensions by contributing individual
List of extensions known to be broken
Modules by category
36 categories:
- BRAINS
- Cardiac MRI Toolkit
- Converters
- Developer Tools
- Diffusion
- Editor Effects
- Editor Effect
- Endoscopy
- Examples
- Exporter
- File
- Filtering
- IGT
- Informatics
- Legacy
- Margin Calculator
- Mesh Generation
- Mesh Generation
- Microscopy
- Multidimensional data
- Multi Volume Support
- Perk Tutor
- Plastimatch
- Quantification
- Radiotherapy
- Registration
- Segmentation
- Shape Analysis
- Slicelets
- Surface Models
- Testing
- Unspecified
- Utilities
- Vascular Modeling Toolkit
- Wizards
- Work in Progress
BRAINS
LabelStatistics
- BRAINSLabel Stats (cli, built-in)
Cardiac MRI Toolkit
- CMRToolkit Registration (scripted, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Connected Threshold Filter (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Isolated Connected Filter (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Wizard (scripted, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Axial Dilate (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit PVAntrum Cut (cli, bundled in Cardiac MRI Toolkit extension)
- Scar Visualization (scripted, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Boolean REMOVEFilter (cli, bundled in Cardiac MRI Toolkit extension)
- LASegmentation Workflow (scripted, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Automatic Left Atrial Scar (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Registration BRAINSFit (scripted, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Inhomogeneity Correction (cli, bundled in Cardiac MRI Toolkit extension)
Converters
- Vector To Scalar Volume (scripted, built-in)
- Crop Volume (loadable, built-in)
- Create DICOMSeries (cli, built-in)
- Orient Scalar Volume (cli, built-in)
Developer Tools
- Event Broker
- Execution Model Tour (cli, built-in)
- Double Arrays (loadable, built-in)
- Cameras (loadable, built-in)
- Extension Stats (scripted, bundled in Developer Tools For Extensions extension)
- Developer Tools For Extensions (scripted, bundled in Developer Tools For Extensions extension)
- Extension Wizard (scripted, built-in)
- Image Maker (cli, bundled in Image Maker extension)
DICOM Plugins
- DICOMLongitudinal PETCTPlugin
- DICOMRWVMPlugin
- Multi Volume Importer Plugin
- DICOMPETSUVPlugin
- Dicom Rt Import Plugin
- DICOMDiffusion Volume Plugin
- DICOMSegmentation Plugin
- Dicom Sro Import Plugin
- DICOMScalar Volume Plugin
- DICOMSlicer Data Bundle Plugin
Editor Extensions
- Binary Watershed Effect (scripted, bundled in IASEM extension)
- Double Threshold Effect (scripted, bundled in IASEM extension)
- PETTumor Segmentation Effect (scripted, bundled in PETTumor Segmentation extension)
Matlab
- Matlab Commander (cli, bundled in Matlab Bridge extension)
- Matlab Module Generator (loadable, bundled in Matlab Bridge extension)
Diffusion
- DICOM2Full Brain Tractography (scripted, built-in)
- Tractography Display (loadable, built-in)
Diffusion Data Conversion
- DWIConvert (cli, built-in)
Diffusion Tensor Images
- Resample DTIVolume (cli, built-in)
- Diffusion Tensor Scalar Measurements (cli, built-in)
- Resample DTIlog Euclidean (cli, bundled in Resample DTIlog Euclidean extension)
- Tractography Label Map Seeding (cli, built-in)
- Tractography Interactive Seeding (loadable, built-in)
Diffusion Weighted Images
- DWIRician LMMSEFilter (cli, built-in)
- Resample Scalar Vector DWIVolume (cli, built-in)
- DWITo DTIEstimation (cli, built-in)
- Finsler Backtracing (cli, bundled in Finsler Tractography extension)
- DWIJoint Rician LMMSEFilter (cli, built-in)
- Finsler Tractography (cli, bundled in Finsler Tractography extension)
- Diffusion Weighted Volume Masking (cli, built-in)
FiberAnalysis
- DTIAtlas Fiber Analyzer (cli, bundled in DTIAtlas Fiber Analyzer extension)
- Fiber Compare (cli, bundled in DTIAtlas Fiber Analyzer extension)
- Merge Stat With Fiber (cli, bundled in DTIAtlas Fiber Analyzer extension)
- dtitractstat (cli, bundled in DTIAtlas Fiber Analyzer extension)
Tractography
- Fiber Bundle To Label Map (scripted, built-in)
- Fiber Bundle Label Select (cli, built-in)
- UKFTractography (cli, bundled in UKFTractography extension)
Editor Effects
- Window Level Effect (scripted, bundled in Window Level Effect extension)
EditorEffect
- PETTumor Segmentation (loadable, bundled in PETTumor Segmentation extension)
Endoscopy
- Endoscopy (scripted, built-in)
Examples
- Fast Grow Cut (loadable, bundled in Fast Grow Cut Effect extension)
- Fast Grow Cut Segmenter (loadable, bundled in Carrera Slice extension)
- Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)
- Carrera Slice (loadable, bundled in Carrera Slice extension)
Exporter
- Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)
File
- Convert VTK (cli, bundled in UKFTractography extension)
Filtering
- Extract Skeleton (cli, built-in)
- N4ITKBias Field Correction (cli, built-in)
- Simple Filters (scripted, built-in)
- Image Label Combine (cli, built-in)
- Voting Binary Hole Filling Image Filter (cli, built-in)
- Histogram Matching (cli, built-in)
- Checker Board Filter (cli, built-in)
- Threshold Scalar Volume (cli, built-in)
Arithmetic
- Multiply Scalar Volumes (cli, built-in)
- Add Scalar Volumes (cli, built-in)
- Cast Scalar Volume (cli, built-in)
- Subtract Scalar Volumes (cli, built-in)
- Mask Scalar Volume (cli, built-in)
Denoising
- Gradient Anisotropic Diffusion (cli, built-in)
- Median Image Filter (cli, built-in)
- Gaussian Blur Image Filter (cli, built-in)
- Curvature Anisotropic Diffusion (cli, built-in)
Morphology
- Grayscale Fill Hole Image Filter (cli, built-in)
- Erode Label (cli, bundled in Erode Dilate Label extension)
- Grayscale Grind Peak Image Filter (cli, built-in)
- Dilate Label (cli, bundled in Erode Dilate Label extension)
IGT
- Resection Volume (scripted, bundled in Resection Planner extension)
- Volume Reslice Driver (loadable, bundled in Slicer IGT extension)
- Collect Fiducials (loadable, bundled in Slicer IGT extension)
- Percutaneous Approach Analysis (scripted, bundled in Percutaneous Approach Analysis extension)
- Fiducials To Model Registration (scripted, bundled in Slicer IGT extension)
- Create Models (loadable, bundled in Slicer IGT extension)
- Port Placement (scripted, bundled in Port Placement extension)
- Open IGTLink IF (loadable, built-in)
- Tracker Stabilizer (loadable, bundled in Tracker Stabilizer extension)
- Path Explorer (loadable, bundled in Slicer IGT extension)
- Ultrasound Snapshots (loadable, bundled in Slicer IGT extension)
- Transform Fusion (loadable, bundled in Slicer IGT extension)
- Breach Warning (loadable, bundled in Slicer IGT extension)
- Gyro Guide (scripted, bundled in Gyro Guide extension)
- Fiducial Registration Wizard (loadable, bundled in Slicer IGT extension)
- Watchdog (loadable, bundled in Slicer IGT extension)
- Open IGTLink Remote (loadable, bundled in Slicer IGT extension)
- Plus Remote (scripted, bundled in Slicer IGT extension)
- i Gyne (scripted, bundled in i Gyne extension)
- Needle Finder (scripted, bundled in Needle Finder extension)
- Model Registration (scripted, bundled in Slicer IGT extension)
- Pivot Calibration (loadable, bundled in Slicer IGT extension)
- Corner Annotation (scripted, bundled in Corner Annotation extension)
Informatics
- Annotations (loadable, built-in)
- Markups (loadable, built-in)
- Units (loadable, built-in)
- DICOM (scripted, built-in)
- Sample Data (scripted, built-in)
- Subject Hierarchy (loadable, built-in)
- Data (loadable, built-in)
- Colors (loadable, built-in)
- Curve Maker (scripted, bundled in Curve Maker extension)
- TCIABrowser (scripted, bundled in TCIABrowser extension)
Legacy
Converters
- BSpline To Deformation Field (cli, built-in)
Diffusion
Denoising
- DWIUnbiased Non Local Means Filter (cli, built-in)
Diffusion Data Conversion
- DTIimport (cli, built-in)
- DTIexport (cli, built-in)
Filtering
- Otsu Threshold Image Filter (cli, built-in)
- Resample Scalar Volume (cli, built-in)
Registration
- Test Grid Transform Registration (cli, built-in)
- Expert Automated Registration (cli, built-in)
Work in Progress
Diffusion Tensor
Test
- Diffusion Tensor Test (cli, built-in)
Margin Calculator
- Synthetic RTDose (scripted, bundled in Margin Calculator extension)
- Motion Simulator Double Array (loadable, bundled in Margin Calculator extension)
- Dose Morphology (loadable, bundled in Margin Calculator extension)
- Margin Calculator (scripted, bundled in Margin Calculator extension)
- Dose Population Histogram (loadable, bundled in Margin Calculator extension)
- Motion Simulator (loadable, bundled in Margin Calculator extension)
Mesh Generation
- Cleaver CLI (cli, bundled in Cleaver Extension extension)
MeshGeneration
- Body Centric Cubic Mesh (cli, bundled in CBC 3D I2MConversion extension)
- Mesh Compression (cli, bundled in CBC 3D I2MConversion extension)
Microscopy
- Bin Shrink (cli, bundled in IASEM extension)
- Label Object Statistics (scripted, bundled in IASEM extension)
- Spacing Aware Curvature Diffusion (cli, bundled in IASEM extension)
- IASEMImport Series (cli, bundled in IASEM extension)
- IASEMImport (cli, bundled in IASEM extension)
Multidimensional data
- Metafile Importer (loadable, bundled in Multidim Data extension)
- Sequence Browser (loadable, bundled in Multidim Data extension)
- Sequences (loadable, bundled in Multidim Data extension)
MultiVolume Support
- Multi Volume Explorer (loadable, built-in)
- Multi Volume Importer (scripted, built-in)
Perk Tutor
- Python Metrics Calculator (scripted, bundled in Perk Tutor extension)
- Workflow Segmentation (loadable, bundled in Perk Tutor extension)
- Transform Recorder (loadable, bundled in Perk Tutor extension)
- Perk Evaluator (loadable, bundled in Perk Tutor extension)
Plastimatch
- Dicom Sro Export (scripted, bundled in Slicer RT extension)
- Plm Register (scripted, bundled in Slicer RT extension)
Registration
- plastimatch slicer bspline (cli, bundled in Slicer RT extension)
- plastimatch slicer landwarp (cli, bundled in Slicer RT extension)
Utilities
- Plastimatch Py (loadable, bundled in Slicer RT extension)
Quantification
- d Pet Brain Quantification (scripted, bundled in Pet Spect Analysis extension)
- Quantitative Indices CLI (cli, bundled in PET-Indi C extension)
- PETStandard Uptake Value Computation (cli, built-in)
- SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
- Spinal Curvature Measurement (scripted, bundled in Scoliosis extension)
- PETIndi C (scripted, bundled in PET-Indi C extension)
- Pk Modeling (cli, bundled in Pk Modeling extension)
- Quantitative Indices Tool (scripted, bundled in PET-Indi C extension)
- Heterogeneity CAD (scripted, bundled in Open CAD extension)
- PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
- Dice Computation (loadable, bundled in Dice Computation extension)
- Data Probe (scripted, built-in)
ChangeQuantification
- Intensity Difference Metric (cli, bundled in Change Tracker extension)
Radiotherapy
- Contour Comparison (loadable, bundled in Slicer RT extension)
- Dicom Rt Import (loadable, bundled in Slicer RT extension)
- Beams (loadable, bundled in Slicer RT extension)
- Dvh Comparison (scripted, bundled in Slicer RT extension)
- Isodose (loadable, bundled in Slicer RT extension)
- Contours (loadable, bundled in Slicer RT extension)
- Dose Accumulation (loadable, bundled in Slicer RT extension)
- Dicom Rt Export (loadable, bundled in Slicer RT extension)
- Dose Comparison (loadable, bundled in Slicer RT extension)
- Contour Morphology (loadable, bundled in Slicer RT extension)
- Dicom Sro Import (loadable, bundled in Slicer RT extension)
- Dose Volume Histogram (loadable, bundled in Slicer RT extension)
- Planar Image (loadable, bundled in Slicer RT extension)
Registration
- BRAINSResample (cli, built-in)
- Transforms (loadable, built-in)
- BRAINSResize (cli, built-in)
- Landmark Registration (scripted, built-in)
- BRAINSFit (cli, built-in)
- PBNRR (cli, bundled in PBNRR extension)
- Perform Metric Test (cli, built-in)
Specialized
- ACPCTransform (cli, built-in)
- Fiducial Registration (cli, built-in)
- VBRAINSDemon Warp (cli, built-in)
- BRAINSDemon Warp (cli, built-in)
- Reformat (loadable, built-in)
Segmentation
- Airway Segmentation (scripted, bundled in Airway Segmentation extension)
- IGR3D MABMIS Training (cli, bundled in MABMIS extension)
- Wasp (scripted, bundled in Wasp extension)
- ABC (cli, bundled in ABC extension)
- EMSegment Quick (loadable, built-in)
- Simple Region Growing Segmentation (cli, built-in)
- EMSegment (loadable, built-in)
- Volume Clip With Roi (scripted, bundled in Volume Clip extension)
- Segment CAD (scripted, bundled in Open CAD extension)
- Swiss Skull Stripper (cli, bundled in Swiss Skull Stripper extension)
- Airway Segmentation CLI (cli, bundled in Airway Segmentation extension)
- LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
- Sobolev Segmenter (cli, bundled in Sobolev Segmenter extension)
- Volume Clip With Model (scripted, bundled in Volume Clip extension)
- IGR3D MABMIS Testing (cli, bundled in MABMIS extension)
- Intensity Segmenter (cli, bundled in Intensity Segmenter extension)
Specialized
- EMSegment Command Line (cli, built-in)
- Robust Statistics Segmenter (cli, built-in)
- BRAINSROIAuto (cli, built-in)
Shape Analysis
- Mesh To Label Map (cli, bundled in Mesh To Label Map extension)
- Angle Planes (scripted, bundled in Angle Planes Extension extension)
- Model To Model Distance (cli, bundled in Model To Model Distance extension)
- Mesh Statistics (scripted, bundled in Mesh Statistics Extension extension)
- Easy Clip (scripted, bundled in Easy Clip extension)
- Pick And Paint (scripted, bundled in Pick And Paint Extension extension)
- Q3DC (scripted, bundled in Q3DC extension)
CMF Registration
- Apply Matrix (cli, bundled in CMFreg extension)
- Surface Registration (scripted, bundled in CMFreg extension)
- Label Extraction (cli, bundled in CMFreg extension)
- Label Addition (cli, bundled in CMFreg extension)
- Downsize (cli, bundled in CMFreg extension)
Voxelbase Registration
- Mask Creation (cli, bundled in CMFreg extension)
- Non Growing (cli, bundled in CMFreg extension)
- Growing (cli, bundled in CMFreg extension)
Slicelets
- Gel Dosimetry Analysis (scripted, bundled in Gel Dosimetry Analysis extension)
- Gel Dosimetry Analysis Algo (loadable, bundled in Gel Dosimetry Analysis extension)
Surface Models
- Model To Label Map (cli, built-in)
- Merge Models (cli, built-in)
- Surface Toolbox (scripted, built-in)
- Probe Volume With Model (cli, built-in)
- Model Maker (cli, built-in)
- Grayscale Model Maker (cli, built-in)
- Label Map Smoothing (cli, built-in)
Testing
- Self Tests
- CLIROITest (cli, built-in)
- CLI4Test
- Threshold Threading Test
- Scoliosis Monitoring (scripted, bundled in Scoliosis extension)
- Performance Tests
- Slicer MRBTest
IGT Tests
- Breach Warning Self Test
- Watchdog Self Test
SlicerRT Tests
- NAMIC Tutorial 2013June Self Test
- Dicom Rt Import Self Test
- Batch Contour Conversion (scripted, bundled in Slicer RT extension)
TestCases
- Slice Link Logic (scripted, built-in)
- Atlas Tests
- RSNAQuant Tutorial
- Volume Rendering Scene Close (scripted, built-in)
- test tractography display
- slicer Close Crash Bug2590
- Subject Hierarchy Generic Self Test
- Scene Performance (scripted, built-in)
- Charting (scripted, built-in)
- Neurosurgical Planning Tutorial Markups Self Test
- Markups In Compare Viewers Self Test
- Cardiac Agatston Measures (scripted, bundled in Cardiac Agatston Measures extension)
- fiber visibility crash2438
- scene Import2428
- RSNAVis Tutorial
- JRC2013Vis
- RSNA2012Prostate Demo
- Add Many Markups Fiducial Test
- Colors Scalar Bar Self Test
- Markups In Views Self Test
- Subject Hierarchy Core Plugins Self Test
- Change Tracker Self Test
- Fiducial Layout Switch Bug1914
- View Controllers Slice Interpolation Bug1926
- Slicer4Minute (scripted, built-in)
- label Toggle Bug2049
Unspecified
- BRAINSDWICleanup (cli, built-in)
Utilities
- Thingiverse Browser (scripted, bundled in Thingiverse Browser extension)
- BRAINSStrip Rotation (cli, built-in)
- EMSegment Transform To New Format (cli, built-in)
- Data Store (loadable, built-in)
BRAINS
- BRAINSTransform Convert (cli, built-in)
Vascular Modeling Toolkit
- Vesselness Filtering (scripted, bundled in VMTK extension)
- Centerline Computation (scripted, bundled in VMTK extension)
- Level Set Segmentation (scripted, bundled in VMTK extension)
Wizards
- Compare Volumes (scripted, built-in)
- Change Tracker (scripted, bundled in Change Tracker extension)
Work in Progress
- Longitudinal PETCT (loadable, bundled in Longitudinal PETCT extension)
Converters
- Label To DICOMSEGConverter (scripted, bundled in Reporting extension)
Informatics
TestCases
- Reporting Self Test
- Label To DICOMSEGConverter Self Test
Modules by name
233 modules:
- ABC (cli, bundled in ABC extension)
- ACPCTransform (cli, built-in)
- Add Scalar Volumes (cli, built-in)
- Airway Segmentation (scripted, bundled in Airway Segmentation extension)
- Airway Segmentation CLI (cli, bundled in Airway Segmentation extension)
- Angle Planes (scripted, bundled in Angle Planes Extension extension)
- Annotations (loadable, built-in)
- Apply Matrix (cli, bundled in CMFreg extension)
- Beams (loadable, bundled in Slicer RT extension)
- Bin Shrink (cli, bundled in IASEM extension)
- Body Centric Cubic Mesh (cli, bundled in CBC 3D I2MConversion extension)
- BRAINSDemon Warp (cli, built-in)
- BRAINSDWICleanup (cli, built-in)
- BRAINSFit (cli, built-in)
- BRAINSLabel Stats (cli, built-in)
- BRAINSResample (cli, built-in)
- BRAINSResize (cli, built-in)
- BRAINSROIAuto (cli, built-in)
- BRAINSStrip Rotation (cli, built-in)
- BRAINSTransform Convert (cli, built-in)
- Breach Warning (loadable, bundled in Slicer IGT extension)
- Carrera Slice (loadable, bundled in Carrera Slice extension)
- Cast Scalar Volume (cli, built-in)
- Centerline Computation (scripted, bundled in VMTK extension)
- Change Tracker (scripted, bundled in Change Tracker extension)
- Checker Board Filter (cli, built-in)
- Cleaver CLI (cli, bundled in Cleaver Extension extension)
- CMRToolkit Automatic Left Atrial Scar (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Axial Dilate (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Boolean REMOVEFilter (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Connected Threshold Filter (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Inhomogeneity Correction (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Isolated Connected Filter (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit PVAntrum Cut (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Registration (scripted, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Registration BRAINSFit (scripted, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Wizard (scripted, bundled in Cardiac MRI Toolkit extension)
- Collect Fiducials (loadable, bundled in Slicer IGT extension)
- Colors (loadable, built-in)
- Compare Volumes (scripted, built-in)
- Contour Comparison (loadable, bundled in Slicer RT extension)
- Contour Morphology (loadable, bundled in Slicer RT extension)
- Contours (loadable, bundled in Slicer RT extension)
- Convert VTK (cli, bundled in UKFTractography extension)
- Corner Annotation (scripted, bundled in Corner Annotation extension)
- Create DICOMSeries (cli, built-in)
- Create Models (loadable, bundled in Slicer IGT extension)
- Crop Volume (loadable, built-in)
- Curvature Anisotropic Diffusion (cli, built-in)
- Curve Maker (scripted, bundled in Curve Maker extension)
- Data (loadable, built-in)
- Data Probe (scripted, built-in)
- Data Store (loadable, built-in)
- Dice Computation (loadable, bundled in Dice Computation extension)
- DICOM (scripted, built-in)
- DICOM2Full Brain Tractography (scripted, built-in)
- Dicom Rt Export (loadable, bundled in Slicer RT extension)
- Dicom Rt Import (loadable, bundled in Slicer RT extension)
- Dicom Sro Export (scripted, bundled in Slicer RT extension)
- Dicom Sro Import (loadable, bundled in Slicer RT extension)
- Diffusion Tensor Scalar Measurements (cli, built-in)
- Diffusion Weighted Volume Masking (cli, built-in)
- Dilate Label (cli, bundled in Erode Dilate Label extension)
- Dose Accumulation (loadable, bundled in Slicer RT extension)
- Dose Comparison (loadable, bundled in Slicer RT extension)
- Dose Morphology (loadable, bundled in Margin Calculator extension)
- Dose Population Histogram (loadable, bundled in Margin Calculator extension)
- Dose Volume Histogram (loadable, bundled in Slicer RT extension)
- Downsize (cli, bundled in CMFreg extension)
- d Pet Brain Quantification (scripted, bundled in Pet Spect Analysis extension)
- DTIAtlas Fiber Analyzer (cli, bundled in DTIAtlas Fiber Analyzer extension)
- dtitractstat (cli, bundled in DTIAtlas Fiber Analyzer extension)
- Dvh Comparison (scripted, bundled in Slicer RT extension)
- DWIConvert (cli, built-in)
- DWIJoint Rician LMMSEFilter (cli, built-in)
- DWIRician LMMSEFilter (cli, built-in)
- DWITo DTIEstimation (cli, built-in)
- Easy Clip (scripted, bundled in Easy Clip extension)
- EMSegment (loadable, built-in)
- EMSegment Command Line (cli, built-in)
- EMSegment Quick (loadable, built-in)
- EMSegment Transform To New Format (cli, built-in)
- Endoscopy (scripted, built-in)
- Erode Label (cli, bundled in Erode Dilate Label extension)
- Extract Skeleton (cli, built-in)
- Fast Grow Cut (loadable, bundled in Fast Grow Cut Effect extension)
- Fast Grow Cut Segmenter (loadable, bundled in Carrera Slice extension)
- Fiber Bundle Label Select (cli, built-in)
- Fiber Bundle To Label Map (scripted, built-in)
- Fiber Compare (cli, bundled in DTIAtlas Fiber Analyzer extension)
- Fiducial Registration (cli, built-in)
- Fiducial Registration Wizard (loadable, bundled in Slicer IGT extension)
- Fiducials To Model Registration (scripted, bundled in Slicer IGT extension)
- Finsler Backtracing (cli, bundled in Finsler Tractography extension)
- Finsler Tractography (cli, bundled in Finsler Tractography extension)
- Gaussian Blur Image Filter (cli, built-in)
- Gel Dosimetry Analysis (scripted, bundled in Gel Dosimetry Analysis extension)
- Gel Dosimetry Analysis Algo (loadable, bundled in Gel Dosimetry Analysis extension)
- Gradient Anisotropic Diffusion (cli, built-in)
- Grayscale Fill Hole Image Filter (cli, built-in)
- Grayscale Grind Peak Image Filter (cli, built-in)
- Grayscale Model Maker (cli, built-in)
- Growing (cli, bundled in CMFreg extension)
- Gyro Guide (scripted, bundled in Gyro Guide extension)
- Heterogeneity CAD (scripted, bundled in Open CAD extension)
- Histogram Matching (cli, built-in)
- IASEMImport (cli, bundled in IASEM extension)
- IASEMImport Series (cli, bundled in IASEM extension)
- IGR3D MABMIS Testing (cli, bundled in MABMIS extension)
- IGR3D MABMIS Training (cli, bundled in MABMIS extension)
- i Gyne (scripted, bundled in i Gyne extension)
- Image Label Combine (cli, built-in)
- Intensity Difference Metric (cli, bundled in Change Tracker extension)
- Intensity Segmenter (cli, bundled in Intensity Segmenter extension)
- Isodose (loadable, bundled in Slicer RT extension)
- KUtil (scripted, bundled in Carrera Slice extension)
- Label Addition (cli, bundled in CMFreg extension)
- Label Extraction (cli, bundled in CMFreg extension)
- Label Map Smoothing (cli, built-in)
- Label Object Statistics (scripted, bundled in IASEM extension)
- Label To DICOMSEGConverter (scripted, bundled in Reporting extension)
- Landmark Registration (scripted, built-in)
- LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
- LASegmentation Workflow (scripted, bundled in Cardiac MRI Toolkit extension)
- Level Set Segmentation (scripted, bundled in VMTK extension)
- Longitudinal PETCT (loadable, bundled in Longitudinal PETCT extension)
- Margin Calculator (scripted, bundled in Margin Calculator extension)
- Markups (loadable, built-in)
- Mask Creation (cli, bundled in CMFreg extension)
- Mask Scalar Volume (cli, built-in)
- Median Image Filter (cli, built-in)
- Merge Models (cli, built-in)
- Merge Stat With Fiber (cli, bundled in DTIAtlas Fiber Analyzer extension)
- Mesh Compression (cli, bundled in CBC 3D I2MConversion extension)
- Mesh Statistics (scripted, bundled in Mesh Statistics Extension extension)
- Mesh To Label Map (cli, bundled in Mesh To Label Map extension)
- Metafile Importer (loadable, bundled in Multidim Data extension)
- Model Maker (cli, built-in)
- Model Registration (scripted, bundled in Slicer IGT extension)
- Models (loadable, built-in)
- Model To Label Map (cli, built-in)
- Model To Model Distance (cli, bundled in Model To Model Distance extension)
- Motion Simulator (loadable, bundled in Margin Calculator extension)
- Motion Simulator Double Array (loadable, bundled in Margin Calculator extension)
- Multiply Scalar Volumes (cli, built-in)
- Multi Volume Explorer (loadable, built-in)
- Multi Volume Importer (scripted, built-in)
- N4ITKBias Field Correction (cli, built-in)
- Needle Finder (scripted, bundled in Needle Finder extension)
- Non Growing (cli, bundled in CMFreg extension)
- Open IGTLink IF (loadable, built-in)
- Open IGTLink Remote (loadable, bundled in Slicer IGT extension)
- Orient Scalar Volume (cli, built-in)
- Path Explorer (loadable, bundled in Slicer IGT extension)
- PBNRR (cli, bundled in PBNRR extension)
- Percutaneous Approach Analysis (scripted, bundled in Percutaneous Approach Analysis extension)
- Perform Metric Test (cli, built-in)
- Perk Evaluator (loadable, bundled in Perk Tutor extension)
- PETIndi C (scripted, bundled in PET-Indi C extension)
- PETStandard Uptake Value Computation (cli, built-in)
- PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
- PETTumor Segmentation (loadable, bundled in PETTumor Segmentation extension)
- Pick And Paint (scripted, bundled in Pick And Paint Extension extension)
- Pivot Calibration (loadable, bundled in Slicer IGT extension)
- Pk Modeling (cli, bundled in Pk Modeling extension)
- Planar Image (loadable, bundled in Slicer RT extension)
- plastimatch slicer bspline (cli, bundled in Slicer RT extension)
- plastimatch slicer landwarp (cli, bundled in Slicer RT extension)
- Plastimatch Py (loadable, bundled in Slicer RT extension)
- Plm Register (scripted, bundled in Slicer RT extension)
- Plus Remote (scripted, bundled in Slicer IGT extension)
- Port Placement (scripted, bundled in Port Placement extension)
- Probe Volume With Model (cli, built-in)
- Python Metrics Calculator (scripted, bundled in Perk Tutor extension)
- Q3DC (scripted, bundled in Q3DC extension)
- Quantitative Indices CLI (cli, bundled in PET-Indi C extension)
- Quantitative Indices Tool (scripted, bundled in PET-Indi C extension)
- Reformat (loadable, built-in)
- Reporting (loadable, bundled in Reporting extension)
- Resample DTIlog Euclidean (cli, bundled in Resample DTIlog Euclidean extension)
- Resample DTIVolume (cli, built-in)
- Resample Scalar Vector DWIVolume (cli, built-in)
- Resection Volume (scripted, bundled in Resection Planner extension)
- Robust Statistics Segmenter (cli, built-in)
- Sample Data (scripted, built-in)
- Scar Visualization (scripted, bundled in Cardiac MRI Toolkit extension)
- Scene Views (loadable, built-in)
- Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)
- Segment CAD (scripted, bundled in Open CAD extension)
- Sequence Browser (loadable, bundled in Multidim Data extension)
- Sequences (loadable, bundled in Multidim Data extension)
- Simple Filters (scripted, built-in)
- Simple Region Growing Segmentation (cli, built-in)
- Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)
- Sobolev Segmenter (cli, bundled in Sobolev Segmenter extension)
- Spacing Aware Curvature Diffusion (cli, bundled in IASEM extension)
- Spinal Curvature Measurement (scripted, bundled in Scoliosis extension)
- Subject Hierarchy (loadable, built-in)
- Subtract Scalar Volumes (cli, built-in)
- Surface Registration (scripted, bundled in CMFreg extension)
- Surface Toolbox (scripted, built-in)
- SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
- Swiss Skull Stripper (cli, bundled in Swiss Skull Stripper extension)
- Synthetic RTDose (scripted, bundled in Margin Calculator extension)
- TCIABrowser (scripted, bundled in TCIABrowser extension)
- Thingiverse Browser (scripted, bundled in Thingiverse Browser extension)
- Threshold Scalar Volume (cli, built-in)
- Tracker Stabilizer (loadable, bundled in Tracker Stabilizer extension)
- Tractography Display (loadable, built-in)
- Tractography Interactive Seeding (loadable, built-in)
- Tractography Label Map Seeding (cli, built-in)
- Transform Fusion (loadable, bundled in Slicer IGT extension)
- Transform Recorder (loadable, bundled in Perk Tutor extension)
- Transforms (loadable, built-in)
- UKFTractography (cli, bundled in UKFTractography extension)
- Ultrasound Snapshots (loadable, bundled in Slicer IGT extension)
- Units (loadable, built-in)
- VBRAINSDemon Warp (cli, built-in)
- Vector To Scalar Volume (scripted, built-in)
- Vesselness Filtering (scripted, bundled in VMTK extension)
- Vff File Reader (loadable, bundled in Slicer RT extension)
- View Controllers (loadable, built-in)
- Volume Clip With Model (scripted, bundled in Volume Clip extension)
- Volume Clip With Roi (scripted, bundled in Volume Clip extension)
- Volume Rendering (loadable, built-in)
- Volume Reslice Driver (loadable, bundled in Slicer IGT extension)
- Volumes (loadable, built-in)
- Voting Binary Hole Filling Image Filter (cli, built-in)
- Wasp (scripted, bundled in Wasp extension)
- Watchdog (loadable, bundled in Slicer IGT extension)
- Welcome (loadable, built-in)
- Window Level Effect (scripted, bundled in Window Level Effect extension)
- Workflow Segmentation (loadable, bundled in Perk Tutor extension)
