Latest revision as of 17:32, 21 November 2019

Home < Documentation < 4.4 < ModuleExtensionListing

List of extensions known to be broken

Modules by category

36 categories:

BRAINS
- Label Statistics
Cardiac MRI Toolkit
Converters
Developer Tools
- DICOM Plugins
- Editor Extensions
- Matlab
Diffusion
- Diffusion Data Conversion
- Diffusion Tensor Images
- Diffusion Weighted Images
- Fiber Analysis
- Tractography
Editor Effects
Editor Effect
Endoscopy
Examples
Exporter
File
Filtering
- Arithmetic
- Denoising
- Morphology
IGT
Informatics
Legacy
- Converters
- Diffusion
  - Denoising
  - Diffusion Data Conversion
- Filtering
- Registration
- Work in Progress
  - Diffusion Tensor
    - Test
Margin Calculator
Mesh Generation
Mesh Generation
Microscopy
Multidimensional data
Multi Volume Support
Perk Tutor
Plastimatch
- Registration
- Utilities
Quantification
- Change Quantification
Radiotherapy
Registration
- Specialized
Segmentation
- Specialized
Shape Analysis
- CMF Registration
  - Voxelbase Registration
Slicelets
Surface Models
Testing
- IGT Tests
- Slicer RT Tests
- Test Cases
Unspecified
Utilities
- BRAINS
Vascular Modeling Toolkit
Wizards
Work in Progress
- Converters
- Informatics
  - Test Cases

BRAINS

LabelStatistics

BRAINSLabel Stats (cli, built-in)

Cardiac MRI Toolkit

CMRToolkit Registration (scripted, bundled in Cardiac MRI Toolkit extension)
CMRToolkit Connected Threshold Filter (cli, bundled in Cardiac MRI Toolkit extension)
CMRToolkit Isolated Connected Filter (cli, bundled in Cardiac MRI Toolkit extension)
CMRToolkit Wizard (scripted, bundled in Cardiac MRI Toolkit extension)
CMRToolkit Axial Dilate (cli, bundled in Cardiac MRI Toolkit extension)
CMRToolkit PVAntrum Cut (cli, bundled in Cardiac MRI Toolkit extension)
Scar Visualization (scripted, bundled in Cardiac MRI Toolkit extension)
CMRToolkit Boolean REMOVEFilter (cli, bundled in Cardiac MRI Toolkit extension)
LASegmentation Workflow (scripted, bundled in Cardiac MRI Toolkit extension)
CMRToolkit Automatic Left Atrial Scar (cli, bundled in Cardiac MRI Toolkit extension)
CMRToolkit Registration BRAINSFit (scripted, bundled in Cardiac MRI Toolkit extension)
CMRToolkit Inhomogeneity Correction (cli, bundled in Cardiac MRI Toolkit extension)

Converters

Vector To Scalar Volume (scripted, built-in)
Crop Volume (loadable, built-in)
Create DICOMSeries (cli, built-in)
Orient Scalar Volume (cli, built-in)

Developer Tools

Event Broker
Execution Model Tour (cli, built-in)
Double Arrays (loadable, built-in)
Cameras (loadable, built-in)
Extension Stats (scripted, bundled in Developer Tools For Extensions extension)
Developer Tools For Extensions (scripted, bundled in Developer Tools For Extensions extension)
Extension Wizard (scripted, built-in)
Image Maker (cli, bundled in Image Maker extension)

DICOM Plugins

DICOMLongitudinal PETCTPlugin
DICOMRWVMPlugin
Multi Volume Importer Plugin
DICOMPETSUVPlugin
Dicom Rt Import Plugin
DICOMDiffusion Volume Plugin
DICOMSegmentation Plugin
Dicom Sro Import Plugin
DICOMScalar Volume Plugin
DICOMSlicer Data Bundle Plugin

Editor Extensions

Binary Watershed Effect (scripted, bundled in IASEM extension)
Double Threshold Effect (scripted, bundled in IASEM extension)
PETTumor Segmentation Effect (scripted, bundled in PETTumor Segmentation extension)

Matlab

Matlab Commander (cli, bundled in Matlab Bridge extension)
Matlab Module Generator (loadable, bundled in Matlab Bridge extension)

Diffusion

DICOM2Full Brain Tractography (scripted, built-in)
Tractography Display (loadable, built-in)

Diffusion Data Conversion

DWIConvert (cli, built-in)

Diffusion Tensor Images

Resample DTIVolume (cli, built-in)
Diffusion Tensor Scalar Measurements (cli, built-in)
Resample DTIlog Euclidean (cli, bundled in Resample DTIlog Euclidean extension)
Tractography Label Map Seeding (cli, built-in)
Tractography Interactive Seeding (loadable, built-in)

Diffusion Weighted Images

DWIRician LMMSEFilter (cli, built-in)
Resample Scalar Vector DWIVolume (cli, built-in)
DWITo DTIEstimation (cli, built-in)
Finsler Backtracing (cli, bundled in Finsler Tractography extension)
DWIJoint Rician LMMSEFilter (cli, built-in)
Finsler Tractography (cli, bundled in Finsler Tractography extension)
Diffusion Weighted Volume Masking (cli, built-in)

FiberAnalysis

DTIAtlas Fiber Analyzer (cli, bundled in DTIAtlas Fiber Analyzer extension)
Fiber Compare (cli, bundled in DTIAtlas Fiber Analyzer extension)
Merge Stat With Fiber (cli, bundled in DTIAtlas Fiber Analyzer extension)
dtitractstat (cli, bundled in DTIAtlas Fiber Analyzer extension)

Tractography

Fiber Bundle To Label Map (scripted, built-in)
Fiber Bundle Label Select (cli, built-in)
UKFTractography (cli, bundled in UKFTractography extension)

Editor Effects

Window Level Effect (scripted, bundled in Window Level Effect extension)

EditorEffect

PETTumor Segmentation (loadable, bundled in PETTumor Segmentation extension)

Endoscopy

Endoscopy (scripted, built-in)

Examples

Fast Grow Cut (loadable, bundled in Fast Grow Cut Effect extension)
Fast Grow Cut Segmenter (loadable, bundled in Carrera Slice extension)
Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)
Carrera Slice (loadable, bundled in Carrera Slice extension)

Exporter

Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)

File

Convert VTK (cli, bundled in UKFTractography extension)

Filtering

Extract Skeleton (cli, built-in)
N4ITKBias Field Correction (cli, built-in)
Simple Filters (scripted, built-in)
Image Label Combine (cli, built-in)
Voting Binary Hole Filling Image Filter (cli, built-in)
Histogram Matching (cli, built-in)
Checker Board Filter (cli, built-in)
Threshold Scalar Volume (cli, built-in)

IGT

Resection Volume (scripted, bundled in Resection Planner extension)
Volume Reslice Driver (loadable, bundled in Slicer IGT extension)
Collect Fiducials (loadable, bundled in Slicer IGT extension)
Percutaneous Approach Analysis (scripted, bundled in Percutaneous Approach Analysis extension)
Fiducials To Model Registration (scripted, bundled in Slicer IGT extension)
Create Models (loadable, bundled in Slicer IGT extension)
Port Placement (scripted, bundled in Port Placement extension)
Open IGTLink IF (loadable, built-in)
Tracker Stabilizer (loadable, bundled in Tracker Stabilizer extension)
Path Explorer (loadable, bundled in Slicer IGT extension)
Ultrasound Snapshots (loadable, bundled in Slicer IGT extension)
Transform Fusion (loadable, bundled in Slicer IGT extension)
Breach Warning (loadable, bundled in Slicer IGT extension)
Gyro Guide (scripted, bundled in Gyro Guide extension)
Fiducial Registration Wizard (loadable, bundled in Slicer IGT extension)
Watchdog (loadable, bundled in Slicer IGT extension)
Open IGTLink Remote (loadable, bundled in Slicer IGT extension)
Plus Remote (scripted, bundled in Slicer IGT extension)
i Gyne (scripted, bundled in i Gyne extension)
Needle Finder (scripted, bundled in Needle Finder extension)
Model Registration (scripted, bundled in Slicer IGT extension)
Pivot Calibration (loadable, bundled in Slicer IGT extension)
Corner Annotation (scripted, bundled in Corner Annotation extension)

Informatics

Annotations (loadable, built-in)
Markups (loadable, built-in)
Units (loadable, built-in)
DICOM (scripted, built-in)
Sample Data (scripted, built-in)
Subject Hierarchy (loadable, built-in)
Data (loadable, built-in)
Colors (loadable, built-in)
Curve Maker (scripted, bundled in Curve Maker extension)
TCIABrowser (scripted, bundled in TCIABrowser extension)

Legacy

Converters

BSpline To Deformation Field (cli, built-in)

Diffusion

Denoising

DWIUnbiased Non Local Means Filter (cli, built-in)

Diffusion Data Conversion

DTIimport (cli, built-in)
DTIexport (cli, built-in)

Filtering

Otsu Threshold Image Filter (cli, built-in)
Resample Scalar Volume (cli, built-in)

Registration

Test Grid Transform Registration (cli, built-in)
Expert Automated Registration (cli, built-in)

Work in Progress

Diffusion Tensor

Test

Diffusion Tensor Test (cli, built-in)

Margin Calculator

Synthetic RTDose (scripted, bundled in Margin Calculator extension)
Motion Simulator Double Array (loadable, bundled in Margin Calculator extension)
Dose Morphology (loadable, bundled in Margin Calculator extension)
Margin Calculator (scripted, bundled in Margin Calculator extension)
Dose Population Histogram (loadable, bundled in Margin Calculator extension)
Motion Simulator (loadable, bundled in Margin Calculator extension)

Mesh Generation

Cleaver CLI (cli, bundled in Cleaver Extension extension)

MeshGeneration

Body Centric Cubic Mesh (cli, bundled in CBC 3D I2MConversion extension)
Mesh Compression (cli, bundled in CBC 3D I2MConversion extension)

Microscopy

Bin Shrink (cli, bundled in IASEM extension)
Label Object Statistics (scripted, bundled in IASEM extension)
Spacing Aware Curvature Diffusion (cli, bundled in IASEM extension)
IASEMImport Series (cli, bundled in IASEM extension)
IASEMImport (cli, bundled in IASEM extension)

Multidimensional data

Metafile Importer (loadable, bundled in Multidim Data extension)
Sequence Browser (loadable, bundled in Multidim Data extension)
Sequences (loadable, bundled in Multidim Data extension)

MultiVolume Support

Multi Volume Explorer (loadable, built-in)
Multi Volume Importer (scripted, built-in)

Perk Tutor

Python Metrics Calculator (scripted, bundled in Perk Tutor extension)
Workflow Segmentation (loadable, bundled in Perk Tutor extension)
Transform Recorder (loadable, bundled in Perk Tutor extension)
Perk Evaluator (loadable, bundled in Perk Tutor extension)

Plastimatch

Dicom Sro Export (scripted, bundled in Slicer RT extension)
Plm Register (scripted, bundled in Slicer RT extension)

Registration

plastimatch slicer bspline (cli, bundled in Slicer RT extension)
plastimatch slicer landwarp (cli, bundled in Slicer RT extension)

Utilities

Plastimatch Py (loadable, bundled in Slicer RT extension)

Quantification

d Pet Brain Quantification (scripted, bundled in Pet Spect Analysis extension)
Quantitative Indices CLI (cli, bundled in PET-Indi C extension)
PETStandard Uptake Value Computation (cli, built-in)
SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
Spinal Curvature Measurement (scripted, bundled in Scoliosis extension)
PETIndi C (scripted, bundled in PET-Indi C extension)
Pk Modeling (cli, bundled in Pk Modeling extension)
Quantitative Indices Tool (scripted, bundled in PET-Indi C extension)
Heterogeneity CAD (scripted, bundled in Open CAD extension)
PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
Dice Computation (loadable, bundled in Dice Computation extension)
Data Probe (scripted, built-in)

ChangeQuantification

Intensity Difference Metric (cli, bundled in Change Tracker extension)

Radiotherapy

Contour Comparison (loadable, bundled in Slicer RT extension)
Dicom Rt Import (loadable, bundled in Slicer RT extension)
Beams (loadable, bundled in Slicer RT extension)
Dvh Comparison (scripted, bundled in Slicer RT extension)
Isodose (loadable, bundled in Slicer RT extension)
Contours (loadable, bundled in Slicer RT extension)
Dose Accumulation (loadable, bundled in Slicer RT extension)
Dicom Rt Export (loadable, bundled in Slicer RT extension)
Dose Comparison (loadable, bundled in Slicer RT extension)
Contour Morphology (loadable, bundled in Slicer RT extension)
Dicom Sro Import (loadable, bundled in Slicer RT extension)
Dose Volume Histogram (loadable, bundled in Slicer RT extension)
Planar Image (loadable, bundled in Slicer RT extension)

Registration

BRAINSResample (cli, built-in)
Transforms (loadable, built-in)
BRAINSResize (cli, built-in)
Landmark Registration (scripted, built-in)
BRAINSFit (cli, built-in)
PBNRR (cli, bundled in PBNRR extension)
Perform Metric Test (cli, built-in)

Specialized

ACPCTransform (cli, built-in)
Fiducial Registration (cli, built-in)
VBRAINSDemon Warp (cli, built-in)
BRAINSDemon Warp (cli, built-in)
Reformat (loadable, built-in)

Segmentation

Airway Segmentation (scripted, bundled in Airway Segmentation extension)
IGR3D MABMIS Training (cli, bundled in MABMIS extension)
Wasp (scripted, bundled in Wasp extension)
ABC (cli, bundled in ABC extension)
EMSegment Quick (loadable, built-in)
Simple Region Growing Segmentation (cli, built-in)
EMSegment (loadable, built-in)
Volume Clip With Roi (scripted, bundled in Volume Clip extension)
Segment CAD (scripted, bundled in Open CAD extension)
Swiss Skull Stripper (cli, bundled in Swiss Skull Stripper extension)
Airway Segmentation CLI (cli, bundled in Airway Segmentation extension)
LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
Sobolev Segmenter (cli, bundled in Sobolev Segmenter extension)
Volume Clip With Model (scripted, bundled in Volume Clip extension)
IGR3D MABMIS Testing (cli, bundled in MABMIS extension)
Intensity Segmenter (cli, bundled in Intensity Segmenter extension)

Specialized

EMSegment Command Line (cli, built-in)
Robust Statistics Segmenter (cli, built-in)
BRAINSROIAuto (cli, built-in)

Shape Analysis

Mesh To Label Map (cli, bundled in Mesh To Label Map extension)
Angle Planes (scripted, bundled in Angle Planes Extension extension)
Model To Model Distance (cli, bundled in Model To Model Distance extension)
Mesh Statistics (scripted, bundled in Mesh Statistics Extension extension)
Easy Clip (scripted, bundled in Easy Clip extension)
Pick And Paint (scripted, bundled in Pick And Paint Extension extension)
Q3DC (scripted, bundled in Q3DC extension)

CMF Registration

Apply Matrix (cli, bundled in CMFreg extension)
Surface Registration (scripted, bundled in CMFreg extension)
Label Extraction (cli, bundled in CMFreg extension)
Label Addition (cli, bundled in CMFreg extension)
Downsize (cli, bundled in CMFreg extension)

Voxelbase Registration

Mask Creation (cli, bundled in CMFreg extension)
Non Growing (cli, bundled in CMFreg extension)
Growing (cli, bundled in CMFreg extension)

Slicelets

Gel Dosimetry Analysis (scripted, bundled in Gel Dosimetry Analysis extension)
Gel Dosimetry Analysis Algo (loadable, bundled in Gel Dosimetry Analysis extension)

Surface Models

Model To Label Map (cli, built-in)
Merge Models (cli, built-in)
Surface Toolbox (scripted, built-in)
Probe Volume With Model (cli, built-in)
Model Maker (cli, built-in)
Grayscale Model Maker (cli, built-in)
Label Map Smoothing (cli, built-in)

Testing

Self Tests
CLIROITest (cli, built-in)
CLI4Test
Threshold Threading Test
Scoliosis Monitoring (scripted, bundled in Scoliosis extension)
Performance Tests
Slicer MRBTest

IGT Tests

Breach Warning Self Test
Watchdog Self Test

SlicerRT Tests

NAMIC Tutorial 2013June Self Test
Dicom Rt Import Self Test
Batch Contour Conversion (scripted, bundled in Slicer RT extension)

TestCases

Slice Link Logic (scripted, built-in)
Atlas Tests
RSNAQuant Tutorial
Volume Rendering Scene Close (scripted, built-in)
test tractography display
slicer Close Crash Bug2590
Subject Hierarchy Generic Self Test
Scene Performance (scripted, built-in)
Charting (scripted, built-in)
Neurosurgical Planning Tutorial Markups Self Test
Markups In Compare Viewers Self Test
Cardiac Agatston Measures (scripted, bundled in Cardiac Agatston Measures extension)
fiber visibility crash2438
scene Import2428
RSNAVis Tutorial
JRC2013Vis
RSNA2012Prostate Demo
Add Many Markups Fiducial Test
Colors Scalar Bar Self Test
Markups In Views Self Test
Subject Hierarchy Core Plugins Self Test
Change Tracker Self Test
Fiducial Layout Switch Bug1914
View Controllers Slice Interpolation Bug1926
Slicer4Minute (scripted, built-in)
label Toggle Bug2049

Unspecified

BRAINSDWICleanup (cli, built-in)

Utilities

Thingiverse Browser (scripted, bundled in Thingiverse Browser extension)
BRAINSStrip Rotation (cli, built-in)
EMSegment Transform To New Format (cli, built-in)
Data Store (loadable, built-in)

BRAINS

BRAINSTransform Convert (cli, built-in)

Vascular Modeling Toolkit

Vesselness Filtering (scripted, bundled in VMTK extension)
Centerline Computation (scripted, bundled in VMTK extension)
Level Set Segmentation (scripted, bundled in VMTK extension)

Wizards

Compare Volumes (scripted, built-in)
Change Tracker (scripted, bundled in Change Tracker extension)

Work in Progress

Longitudinal PETCT (loadable, bundled in Longitudinal PETCT extension)

Converters

Label To DICOMSEGConverter (scripted, bundled in Reporting extension)

Informatics

Reporting (loadable, bundled in Reporting extension)

TestCases

Reporting Self Test
Label To DICOMSEGConverter Self Test

Modules by name

233 modules:

ABC (cli, bundled in ABC extension)
ACPCTransform (cli, built-in)
Add Scalar Volumes (cli, built-in)
Airway Segmentation (scripted, bundled in Airway Segmentation extension)
Airway Segmentation CLI (cli, bundled in Airway Segmentation extension)
Angle Planes (scripted, bundled in Angle Planes Extension extension)
Annotations (loadable, built-in)
Apply Matrix (cli, bundled in CMFreg extension)
Beams (loadable, bundled in Slicer RT extension)
Bin Shrink (cli, bundled in IASEM extension)
Body Centric Cubic Mesh (cli, bundled in CBC 3D I2MConversion extension)
BRAINSDemon Warp (cli, built-in)
BRAINSDWICleanup (cli, built-in)
BRAINSFit (cli, built-in)
BRAINSLabel Stats (cli, built-in)
BRAINSResample (cli, built-in)
BRAINSResize (cli, built-in)
BRAINSROIAuto (cli, built-in)
BRAINSStrip Rotation (cli, built-in)
BRAINSTransform Convert (cli, built-in)
Breach Warning (loadable, bundled in Slicer IGT extension)
Carrera Slice (loadable, bundled in Carrera Slice extension)
Cast Scalar Volume (cli, built-in)
Centerline Computation (scripted, bundled in VMTK extension)
Change Tracker (scripted, bundled in Change Tracker extension)
Checker Board Filter (cli, built-in)
Cleaver CLI (cli, bundled in Cleaver Extension extension)
CMRToolkit Automatic Left Atrial Scar (cli, bundled in Cardiac MRI Toolkit extension)
CMRToolkit Axial Dilate (cli, bundled in Cardiac MRI Toolkit extension)
CMRToolkit Boolean REMOVEFilter (cli, bundled in Cardiac MRI Toolkit extension)
CMRToolkit Connected Threshold Filter (cli, bundled in Cardiac MRI Toolkit extension)
CMRToolkit Inhomogeneity Correction (cli, bundled in Cardiac MRI Toolkit extension)
CMRToolkit Isolated Connected Filter (cli, bundled in Cardiac MRI Toolkit extension)
CMRToolkit PVAntrum Cut (cli, bundled in Cardiac MRI Toolkit extension)
CMRToolkit Registration (scripted, bundled in Cardiac MRI Toolkit extension)
CMRToolkit Registration BRAINSFit (scripted, bundled in Cardiac MRI Toolkit extension)
CMRToolkit Wizard (scripted, bundled in Cardiac MRI Toolkit extension)
Collect Fiducials (loadable, bundled in Slicer IGT extension)
Colors (loadable, built-in)
Compare Volumes (scripted, built-in)
Contour Comparison (loadable, bundled in Slicer RT extension)
Contour Morphology (loadable, bundled in Slicer RT extension)
Contours (loadable, bundled in Slicer RT extension)
Convert VTK (cli, bundled in UKFTractography extension)
Corner Annotation (scripted, bundled in Corner Annotation extension)
Create DICOMSeries (cli, built-in)
Create Models (loadable, bundled in Slicer IGT extension)
Crop Volume (loadable, built-in)
Curvature Anisotropic Diffusion (cli, built-in)
Curve Maker (scripted, bundled in Curve Maker extension)
Data (loadable, built-in)
Data Probe (scripted, built-in)
Data Store (loadable, built-in)
Dice Computation (loadable, bundled in Dice Computation extension)
DICOM (scripted, built-in)
DICOM2Full Brain Tractography (scripted, built-in)
Dicom Rt Export (loadable, bundled in Slicer RT extension)
Dicom Rt Import (loadable, bundled in Slicer RT extension)
Dicom Sro Export (scripted, bundled in Slicer RT extension)
Dicom Sro Import (loadable, bundled in Slicer RT extension)
Diffusion Tensor Scalar Measurements (cli, built-in)
Diffusion Weighted Volume Masking (cli, built-in)
Dilate Label (cli, bundled in Erode Dilate Label extension)
Dose Accumulation (loadable, bundled in Slicer RT extension)
Dose Comparison (loadable, bundled in Slicer RT extension)
Dose Morphology (loadable, bundled in Margin Calculator extension)
Dose Population Histogram (loadable, bundled in Margin Calculator extension)
Dose Volume Histogram (loadable, bundled in Slicer RT extension)
Downsize (cli, bundled in CMFreg extension)
d Pet Brain Quantification (scripted, bundled in Pet Spect Analysis extension)
DTIAtlas Fiber Analyzer (cli, bundled in DTIAtlas Fiber Analyzer extension)
dtitractstat (cli, bundled in DTIAtlas Fiber Analyzer extension)
Dvh Comparison (scripted, bundled in Slicer RT extension)
DWIConvert (cli, built-in)
DWIJoint Rician LMMSEFilter (cli, built-in)
DWIRician LMMSEFilter (cli, built-in)
DWITo DTIEstimation (cli, built-in)
Easy Clip (scripted, bundled in Easy Clip extension)
EMSegment (loadable, built-in)
EMSegment Command Line (cli, built-in)
EMSegment Quick (loadable, built-in)
EMSegment Transform To New Format (cli, built-in)
Endoscopy (scripted, built-in)
Erode Label (cli, bundled in Erode Dilate Label extension)
Extract Skeleton (cli, built-in)
Fast Grow Cut (loadable, bundled in Fast Grow Cut Effect extension)
Fast Grow Cut Segmenter (loadable, bundled in Carrera Slice extension)
Fiber Bundle Label Select (cli, built-in)
Fiber Bundle To Label Map (scripted, built-in)
Fiber Compare (cli, bundled in DTIAtlas Fiber Analyzer extension)
Fiducial Registration (cli, built-in)
Fiducial Registration Wizard (loadable, bundled in Slicer IGT extension)
Fiducials To Model Registration (scripted, bundled in Slicer IGT extension)
Finsler Backtracing (cli, bundled in Finsler Tractography extension)
Finsler Tractography (cli, bundled in Finsler Tractography extension)
Gaussian Blur Image Filter (cli, built-in)
Gel Dosimetry Analysis (scripted, bundled in Gel Dosimetry Analysis extension)
Gel Dosimetry Analysis Algo (loadable, bundled in Gel Dosimetry Analysis extension)
Gradient Anisotropic Diffusion (cli, built-in)
Grayscale Fill Hole Image Filter (cli, built-in)
Grayscale Grind Peak Image Filter (cli, built-in)
Grayscale Model Maker (cli, built-in)
Growing (cli, bundled in CMFreg extension)
Gyro Guide (scripted, bundled in Gyro Guide extension)
Heterogeneity CAD (scripted, bundled in Open CAD extension)
Histogram Matching (cli, built-in)
IASEMImport (cli, bundled in IASEM extension)
IASEMImport Series (cli, bundled in IASEM extension)
IGR3D MABMIS Testing (cli, bundled in MABMIS extension)
IGR3D MABMIS Training (cli, bundled in MABMIS extension)
i Gyne (scripted, bundled in i Gyne extension)
Image Label Combine (cli, built-in)
Intensity Difference Metric (cli, bundled in Change Tracker extension)
Intensity Segmenter (cli, bundled in Intensity Segmenter extension)
Isodose (loadable, bundled in Slicer RT extension)
KUtil (scripted, bundled in Carrera Slice extension)
Label Addition (cli, bundled in CMFreg extension)
Label Extraction (cli, bundled in CMFreg extension)
Label Map Smoothing (cli, built-in)
Label Object Statistics (scripted, bundled in IASEM extension)
Label To DICOMSEGConverter (scripted, bundled in Reporting extension)
Landmark Registration (scripted, built-in)
LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
LASegmentation Workflow (scripted, bundled in Cardiac MRI Toolkit extension)
Level Set Segmentation (scripted, bundled in VMTK extension)
Longitudinal PETCT (loadable, bundled in Longitudinal PETCT extension)
Margin Calculator (scripted, bundled in Margin Calculator extension)
Markups (loadable, built-in)
Mask Creation (cli, bundled in CMFreg extension)
Mask Scalar Volume (cli, built-in)
Median Image Filter (cli, built-in)
Merge Models (cli, built-in)
Merge Stat With Fiber (cli, bundled in DTIAtlas Fiber Analyzer extension)
Mesh Compression (cli, bundled in CBC 3D I2MConversion extension)
Mesh Statistics (scripted, bundled in Mesh Statistics Extension extension)
Mesh To Label Map (cli, bundled in Mesh To Label Map extension)
Metafile Importer (loadable, bundled in Multidim Data extension)
Model Maker (cli, built-in)
Model Registration (scripted, bundled in Slicer IGT extension)
Models (loadable, built-in)
Model To Label Map (cli, built-in)
Model To Model Distance (cli, bundled in Model To Model Distance extension)
Motion Simulator (loadable, bundled in Margin Calculator extension)
Motion Simulator Double Array (loadable, bundled in Margin Calculator extension)
Multiply Scalar Volumes (cli, built-in)
Multi Volume Explorer (loadable, built-in)
Multi Volume Importer (scripted, built-in)
N4ITKBias Field Correction (cli, built-in)
Needle Finder (scripted, bundled in Needle Finder extension)
Non Growing (cli, bundled in CMFreg extension)
Open IGTLink IF (loadable, built-in)
Open IGTLink Remote (loadable, bundled in Slicer IGT extension)
Orient Scalar Volume (cli, built-in)
Path Explorer (loadable, bundled in Slicer IGT extension)
PBNRR (cli, bundled in PBNRR extension)
Percutaneous Approach Analysis (scripted, bundled in Percutaneous Approach Analysis extension)
Perform Metric Test (cli, built-in)
Perk Evaluator (loadable, bundled in Perk Tutor extension)
PETIndi C (scripted, bundled in PET-Indi C extension)
PETStandard Uptake Value Computation (cli, built-in)
PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
PETTumor Segmentation (loadable, bundled in PETTumor Segmentation extension)
Pick And Paint (scripted, bundled in Pick And Paint Extension extension)
Pivot Calibration (loadable, bundled in Slicer IGT extension)
Pk Modeling (cli, bundled in Pk Modeling extension)
Planar Image (loadable, bundled in Slicer RT extension)
plastimatch slicer bspline (cli, bundled in Slicer RT extension)
plastimatch slicer landwarp (cli, bundled in Slicer RT extension)
Plastimatch Py (loadable, bundled in Slicer RT extension)
Plm Register (scripted, bundled in Slicer RT extension)
Plus Remote (scripted, bundled in Slicer IGT extension)
Port Placement (scripted, bundled in Port Placement extension)
Probe Volume With Model (cli, built-in)
Python Metrics Calculator (scripted, bundled in Perk Tutor extension)
Q3DC (scripted, bundled in Q3DC extension)
Quantitative Indices CLI (cli, bundled in PET-Indi C extension)
Quantitative Indices Tool (scripted, bundled in PET-Indi C extension)
Reformat (loadable, built-in)
Reporting (loadable, bundled in Reporting extension)
Resample DTIlog Euclidean (cli, bundled in Resample DTIlog Euclidean extension)
Resample DTIVolume (cli, built-in)
Resample Scalar Vector DWIVolume (cli, built-in)
Resection Volume (scripted, bundled in Resection Planner extension)
Robust Statistics Segmenter (cli, built-in)
Sample Data (scripted, built-in)
Scar Visualization (scripted, bundled in Cardiac MRI Toolkit extension)
Scene Views (loadable, built-in)
Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)
Segment CAD (scripted, bundled in Open CAD extension)
Sequence Browser (loadable, bundled in Multidim Data extension)
Sequences (loadable, bundled in Multidim Data extension)
Simple Filters (scripted, built-in)
Simple Region Growing Segmentation (cli, built-in)
Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)
Sobolev Segmenter (cli, bundled in Sobolev Segmenter extension)
Spacing Aware Curvature Diffusion (cli, bundled in IASEM extension)
Spinal Curvature Measurement (scripted, bundled in Scoliosis extension)
Subject Hierarchy (loadable, built-in)
Subtract Scalar Volumes (cli, built-in)
Surface Registration (scripted, bundled in CMFreg extension)
Surface Toolbox (scripted, built-in)
SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
Swiss Skull Stripper (cli, bundled in Swiss Skull Stripper extension)
Synthetic RTDose (scripted, bundled in Margin Calculator extension)
TCIABrowser (scripted, bundled in TCIABrowser extension)
Thingiverse Browser (scripted, bundled in Thingiverse Browser extension)
Threshold Scalar Volume (cli, built-in)
Tracker Stabilizer (loadable, bundled in Tracker Stabilizer extension)
Tractography Display (loadable, built-in)
Tractography Interactive Seeding (loadable, built-in)
Tractography Label Map Seeding (cli, built-in)
Transform Fusion (loadable, bundled in Slicer IGT extension)
Transform Recorder (loadable, bundled in Perk Tutor extension)
Transforms (loadable, built-in)
UKFTractography (cli, bundled in UKFTractography extension)
Ultrasound Snapshots (loadable, bundled in Slicer IGT extension)
Units (loadable, built-in)
VBRAINSDemon Warp (cli, built-in)
Vector To Scalar Volume (scripted, built-in)
Vesselness Filtering (scripted, bundled in VMTK extension)
Vff File Reader (loadable, bundled in Slicer RT extension)
View Controllers (loadable, built-in)
Volume Clip With Model (scripted, bundled in Volume Clip extension)
Volume Clip With Roi (scripted, bundled in Volume Clip extension)
Volume Rendering (loadable, built-in)
Volume Reslice Driver (loadable, bundled in Slicer IGT extension)
Volumes (loadable, built-in)
Voting Binary Hole Filling Image Filter (cli, built-in)
Wasp (scripted, bundled in Wasp extension)
Watchdog (loadable, bundled in Slicer IGT extension)
Welcome (loadable, built-in)
Window Level Effect (scripted, bundled in Window Level Effect extension)
Workflow Segmentation (loadable, bundled in Perk Tutor extension)

@@ Line 6: / Line 6: @@
 ** [[#Modules_by_category_BRAINS_LabelStatistics|Label Statistics]]
 * [[#Modules_by_category_Cardiac_MRI_Toolkit|Cardiac MRI Toolkit]]
-* [[#Modules_by_category_CMF_Registration|CMF Registration]]
-** [[#Modules_by_category_CMF_Registration_Voxelbase_Registration|Voxelbase Registration]]
 * [[#Modules_by_category_Converters|Converters]]
 * [[#Modules_by_category_Developer_Tools|Developer Tools]]
@@ Line 41: / Line 39: @@
 *** [[#Modules_by_category_Work_in_Progress_Diffusion_Tensor|Diffusion Tensor]]
 **** [[#Modules_by_category_Diffusion_Tensor_Test|Test]]
+* [[#Modules_by_category_Margin_Calculator|Margin Calculator]]
 * [[#Modules_by_category_Mesh_Generation|Mesh Generation]]
 * [[#Modules_by_category_MeshGeneration|Mesh Generation]]
@@ Line 58: / Line 57: @@
 ** [[#Modules_by_category_Segmentation_Specialized|Specialized]]
 * [[#Modules_by_category_Shape_Analysis|Shape Analysis]]
+** [[#Modules_by_category_Shape_Analysis_CMF_Registration|CMF Registration]]
+*** [[#Modules_by_category_CMF_Registration_Voxelbase_Registration|Voxelbase Registration]]
 * [[#Modules_by_category_Slicelets|Slicelets]]
 * [[#Modules_by_category_Surface_Models|Surface Models]]
@@ Line 80: / Line 81: @@
 <span id='Modules_by_category_Cardiac_MRI_Toolkit'></span>
 == Cardiac MRI Toolkit ==
+* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Connected Threshold Filter]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Isolated Connected Filter]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Wizard]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Axial Dilate]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit PVAntrum Cut]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
-* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Axial Dilate]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 * [[Documentation/4.4/Modules/ScarVisualization|Scar Visualization]]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Boolean REMOVEFilter]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+* [[Documentation/4.4/Modules/LASegmentationWorkflow|LASegmentation Workflow]]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Automatic Left Atrial Scar]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
-* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
-* [[Documentation/4.4/Modules/LASegmentationWorkflow|LASegmentation Workflow]]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration BRAINSFit]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Inhomogeneity Correction]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
-* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Wizard]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
-<span id='Modules_by_category_CMF_Registration'></span>
-== CMF Registration ==
-* [[Documentation/4.4/Extensions/CMFreg|Apply Matrix]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
-* [[Documentation/4.4/Modules/LandmarkRegistration|Landmark Registration]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
-* [[Documentation/4.4/Extensions/CMFreg|Surface Registration]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
-* [[Documentation/4.4/Modules/LabelExtraction|Label Extraction]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
-* [[Documentation/4.4/Modules/LabelAddition|Label Addition]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
-* [[Documentation/4.4/Modules/Downsize|Downsize]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
-<span id='Modules_by_category_CMF_Registration_Voxelbase_Registration'></span>
-=== Voxelbase Registration ===
-* [[Documentation/4.4/Modules/Growing|Growing]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
-* [[Documentation/4.4/Modules/MaskCreation|Mask Creation]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
-* [[Documentation/4.4/Modules/NonGrowing|Non Growing]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
 <span id='Modules_by_category_Converters'></span>
 == Converters ==
 * [[Documentation/4.4/Modules/VectorToScalarVolume|Vector To Scalar Volume]]    <small>(scripted, built-in)</small>
+* [[Documentation/4.4/Modules/CropVolume|Crop Volume]]    <small>(loadable, built-in)</small>
 * [[Documentation/4.4/Modules/CreateDICOMSeries|Create DICOMSeries]]    <small>(cli, built-in)</small>
 * [[Documentation/4.4/Modules/OrientScalarVolume|Orient Scalar Volume]]    <small>(cli, built-in)</small>
-* [[Documentation/4.4/Modules/CropVolume|Crop Volume]]    <small>(loadable, built-in)</small>
 <span id='Modules_by_category_Developer_Tools'></span>
 == Developer Tools ==
@@ Line 116: / Line 104: @@
 * [[Documentation/4.4/Modules/ExecutionModelTour|Execution Model Tour]]    <small>(cli, built-in)</small>
 * Double Arrays    <small>(loadable, built-in)</small>
-* [[Documentation/4.4/Extensions/PyDevRemoteDebug|Py Dev Remote Debug]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PyDevRemoteDebug|Py Dev Remote Debug]] extension)</small>
 * [[Documentation/4.4/Modules/Cameras|Cameras]]    <small>(loadable, built-in)</small>
-* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/DeveloperToolsForExtensions Developer Tools For Extensions]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/DeveloperToolsForExtensions Developer Tools For Extensions] extension)</small>
+* [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/DeveloperToolsForExtensions Extension Stats]    <small>(scripted, bundled in [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/DeveloperToolsForExtensions Developer Tools For Extensions] extension)</small>
+* [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/DeveloperToolsForExtensions Developer Tools For Extensions]    <small>(scripted, bundled in [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/DeveloperToolsForExtensions Developer Tools For Extensions] extension)</small>
 * [[Documentation/4.4/Modules/ExtensionWizard|Extension Wizard]]    <small>(scripted, built-in)</small>
 * [[Documentation/4.4/Extensions/ImageMaker|Image Maker]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/ImageMaker|Image Maker]] extension)</small>
@@ Line 136: / Line 124: @@
 === Editor Extensions ===
 * [[Documentation/4.4/Extensions/IASEM|Binary Watershed Effect]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
+* [[Documentation/4.4/Extensions/IASEM|Double Threshold Effect]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
 * [[Documentation/4.4/Modules/PETTumorSegmentationEffect|PETTumor Segmentation Effect]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PETTumorSegmentation|PETTumor Segmentation]] extension)</small>
-* [[Documentation/4.4/Extensions/IASEM|Double Threshold Effect]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
 <span id='Modules_by_category_Developer_Tools_Matlab'></span>
 === Matlab ===
+* [[Documentation/4.4/Modules/MatlabCommander|Matlab Commander]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/MatlabBridge|Matlab Bridge]] extension)</small>
 * [[Documentation/4.4/Modules/MatlabModuleGenerator|Matlab Module Generator]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MatlabBridge|Matlab Bridge]] extension)</small>
-* [[Documentation/4.4/Modules/MatlabCommander|Matlab Commander]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/MatlabBridge|Matlab Bridge]] extension)</small>
 <span id='Modules_by_category_Diffusion'></span>
 == Diffusion ==
@@ Line 152: / Line 140: @@
 === Diffusion Tensor Images ===
 * [[Documentation/4.4/Modules/ResampleDTIVolume|Resample DTIVolume]]    <small>(cli, built-in)</small>
-* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ResampleDTIlogEuclidean Resample DTIlog Euclidean]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ResampleDTIlogEuclidean Resample DTIlog Euclidean] extension)</small>
+* [[Documentation/4.4/Modules/DiffusionTensorScalarMeasurements|Diffusion Tensor Scalar Measurements]]    <small>(cli, built-in)</small>
+* [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/ResampleDTIlogEuclidean Resample DTIlog Euclidean]    <small>(cli, bundled in [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/ResampleDTIlogEuclidean Resample DTIlog Euclidean] extension)</small>
 * [[Documentation/4.4/Modules/TractographyLabelMapSeeding|Tractography Label Map Seeding]]    <small>(cli, built-in)</small>
-* [[Documentation/4.4/Modules/DiffusionTensorScalarMeasurements|Diffusion Tensor Scalar Measurements]]    <small>(cli, built-in)</small>
 * Tractography Interactive Seeding    <small>(loadable, built-in)</small>
 <span id='Modules_by_category_Diffusion_Diffusion_Weighted_Images'></span>
@@ Line 160: / Line 148: @@
 * [[Documentation/4.4/Modules/DWIRicianLMMSEFilter|DWIRician LMMSEFilter]]    <small>(cli, built-in)</small>
 * [[Documentation/4.4/Modules/ResampleScalarVectorDWIVolume|Resample Scalar Vector DWIVolume]]    <small>(cli, built-in)</small>
-* [[Documentation/4.4/Modules/DWIJointRicianLMMSEFilter|DWIJoint Rician LMMSEFilter]]    <small>(cli, built-in)</small>
 * [[Documentation/4.4/Modules/DWIToDTIEstimation|DWITo DTIEstimation]]    <small>(cli, built-in)</small>
 * [[Documentation/4.4/Modules/FinslerBacktracing|Finsler Backtracing]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/FinslerTractography|Finsler Tractography]] extension)</small>
+* [[Documentation/4.4/Modules/DWIJointRicianLMMSEFilter|DWIJoint Rician LMMSEFilter]]    <small>(cli, built-in)</small>
 * [[Documentation/4.4/Modules/FinslerTractography|Finsler Tractography]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/FinslerTractography|Finsler Tractography]] extension)</small>
 * [[Documentation/4.4/Modules/DiffusionWeightedVolumeMasking|Diffusion Weighted Volume Masking]]    <small>(cli, built-in)</small>
@@ Line 187: / Line 175: @@
 <span id='Modules_by_category_Examples'></span>
 == Examples ==
-* [[Documentation/4.4/Modules/FastGrowCut|Fast Grow Cut]]    <small>(loadable, bundled in [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect] extension)</small>
+* [[Documentation/4.4/Modules/FastGrowCut|Fast Grow Cut]]    <small>(loadable, bundled in [https://www.slicer.org/wiki/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect] extension)</small>
-* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Fast Grow Cut Segmenter]    <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
+* [http://wiki.slicer.org/wiki/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Fast Grow Cut Segmenter]    <small>(loadable, bundled in [http://wiki.slicer.org/wiki/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
-* [[Documentation/4.4/Modules/SegmentationAidedRegistration|Segmentation Aided Registration]]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small>
+* [[Documentation/4.4/Modules/SegmentationAidedRegistration|Segmentation Aided Registration]]    <small>(cli, bundled in [http://www.slicer.org/wiki/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small>
-* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]    <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
+* [http://wiki.slicer.org/wiki/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]    <small>(loadable, bundled in [http://wiki.slicer.org/wiki/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
 <span id='Modules_by_category_Exporter'></span>
 == Exporter ==
@@ Line 200: / Line 188: @@
 == Filtering ==
 * [[Documentation/4.4/Modules/ExtractSkeleton|Extract Skeleton]]    <small>(cli, built-in)</small>
-* [[Documentation/4.4/Modules/ThresholdScalarVolume|Threshold Scalar Volume]]    <small>(cli, built-in)</small>
 * [[Documentation/4.4/Modules/N4ITKBiasFieldCorrection|N4ITKBias Field Correction]]    <small>(cli, built-in)</small>
 * [[Documentation/4.4/Modules/SimpleFilters|Simple Filters]]    <small>(scripted, built-in)</small>
@@ Line 207: / Line 194: @@
 * [[Documentation/4.4/Modules/HistogramMatching|Histogram Matching]]    <small>(cli, built-in)</small>
 * [[Documentation/4.4/Modules/CheckerBoardFilter|Checker Board Filter]]    <small>(cli, built-in)</small>
+* [[Documentation/4.4/Modules/ThresholdScalarVolume|Threshold Scalar Volume]]    <small>(cli, built-in)</small>
 <span id='Modules_by_category_Filtering_Arithmetic'></span>
 === Arithmetic ===
 * [[Documentation/4.4/Modules/MultiplyScalarVolumes|Multiply Scalar Volumes]]    <small>(cli, built-in)</small>
 * [[Documentation/4.4/Modules/AddScalarVolumes|Add Scalar Volumes]]    <small>(cli, built-in)</small>
+* [[Documentation/4.4/Modules/CastScalarVolume|Cast Scalar Volume]]    <small>(cli, built-in)</small>
 * [[Documentation/4.4/Modules/SubtractScalarVolumes|Subtract Scalar Volumes]]    <small>(cli, built-in)</small>
-* [[Documentation/4.4/Modules/CastScalarVolume|Cast Scalar Volume]]    <small>(cli, built-in)</small>
 * [[Documentation/4.4/Modules/MaskScalarVolume|Mask Scalar Volume]]    <small>(cli, built-in)</small>
 <span id='Modules_by_category_Filtering_Denoising'></span>
 === Denoising ===
 * [[Documentation/4.4/Modules/GradientAnisotropicDiffusion|Gradient Anisotropic Diffusion]]    <small>(cli, built-in)</small>
-* [[Documentation/4.4/Modules/CurvatureAnisotropicDiffusion|Curvature Anisotropic Diffusion]]    <small>(cli, built-in)</small>
 * [[Documentation/4.4/Modules/MedianImageFilter|Median Image Filter]]    <small>(cli, built-in)</small>
 * [[Documentation/4.4/Modules/GaussianBlurImageFilter|Gaussian Blur Image Filter]]    <small>(cli, built-in)</small>
+* [[Documentation/4.4/Modules/CurvatureAnisotropicDiffusion|Curvature Anisotropic Diffusion]]    <small>(cli, built-in)</small>
 <span id='Modules_by_category_Filtering_Morphology'></span>
 === Morphology ===
 * [[Documentation/4.4/Modules/GrayscaleFillHoleImageFilter|Grayscale Fill Hole Image Filter]]    <small>(cli, built-in)</small>
 * [[Documentation/4.4/Extensions/ErodeDilateLabel|Erode Label]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/ErodeDilateLabel|Erode Dilate Label]] extension)</small>
+* [[Documentation/4.4/Modules/GrayscaleGrindPeakImageFilter|Grayscale Grind Peak Image Filter]]    <small>(cli, built-in)</small>
 * [[Documentation/4.4/Extensions/ErodeDilateLabel|Dilate Label]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/ErodeDilateLabel|Erode Dilate Label]] extension)</small>
-* [[Documentation/4.4/Modules/GrayscaleGrindPeakImageFilter|Grayscale Grind Peak Image Filter]]    <small>(cli, built-in)</small>
 <span id='Modules_by_category_IGT'></span>
 == IGT ==
 * [[Documentation/4.4/Modules/ResectionVolume|Resection Volume]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/ResectionPlanner|Resection Planner]] extension)</small>
-* [[Documentation/4.4/Modules/PathExplorer|Path Explorer]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 * [[Documentation/4.4/Modules/VolumeResliceDriver|Volume Reslice Driver]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
+* [[Documentation/4.4/Modules/CollectFiducials|Collect Fiducials]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 * [[Documentation/4.4/Extensions/PercutaneousApproachAnalysis|Percutaneous Approach Analysis]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PercutaneousApproachAnalysis|Percutaneous Approach Analysis]] extension)</small>
+* [[Documentation/4.4/Extensions/SlicerIGT|Fiducials To Model Registration]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 * [[Documentation/4.4/Extensions/SlicerIGT|Create Models]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 * [[Documentation/4.4/Modules/PortPlacement|Port Placement]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PortPlacement|Port Placement]] extension)</small>
-* [[Documentation/4.4/Modules/CollectFiducials|Collect Fiducials]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 * [[Documentation/4.4/Modules/OpenIGTLinkIF|Open IGTLink IF]]    <small>(loadable, built-in)</small>
 * [[Documentation/4.4/Modules/TrackerStabilizer|Tracker Stabilizer]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/TrackerStabilizer|Tracker Stabilizer]] extension)</small>
+* [[Documentation/4.4/Modules/PathExplorer|Path Explorer]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 * [[Documentation/4.4/Extensions/SlicerIGT|Ultrasound Snapshots]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 * [[Documentation/4.4/Extensions/SlicerIGT|Transform Fusion]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
@@ Line 248: / Line 237: @@
 * [[Documentation/4.4/Extensions/NeedleFinder|Needle Finder]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/NeedleFinder|Needle Finder]] extension)</small>
 * [[Documentation/4.4/Extensions/SlicerIGT|Model Registration]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
-* [[Documentation/4.4/Extensions/SlicerIGT|Fiducials To Model Registration]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 * [[Documentation/4.4/Extensions/SlicerIGT|Pivot Calibration]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 * [[Documentation/4.4/Modules/CornerAnnotation|Corner Annotation]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CornerAnnotation|Corner Annotation]] extension)</small>
@@ Line 275: / Line 263: @@
 <span id='Modules_by_category_Diffusion_Diffusion_Data_Conversion'></span>
 ==== Diffusion Data Conversion ====
+* DTIimport    <small>(cli, built-in)</small>
 * DTIexport    <small>(cli, built-in)</small>
-* DTIimport    <small>(cli, built-in)</small>
 <span id='Modules_by_category_Legacy_Filtering'></span>
 === Filtering ===
@@ Line 292: / Line 280: @@
 ===== Test =====
 * Diffusion Tensor Test    <small>(cli, built-in)</small>
+<span id='Modules_by_category_Margin_Calculator'></span>
+== Margin Calculator ==
+* [[Documentation/4.4/Extensions/MarginCalculator|Synthetic RTDose]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/MarginCalculator|Margin Calculator]] extension)</small>
+* [[Documentation/4.4/Extensions/MarginCalculator|Motion Simulator Double Array]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MarginCalculator|Margin Calculator]] extension)</small>
+* [[Documentation/4.4/Extensions/MarginCalculator|Dose Morphology]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MarginCalculator|Margin Calculator]] extension)</small>
+* [[Documentation/4.4/Extensions/MarginCalculator|Margin Calculator]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/MarginCalculator|Margin Calculator]] extension)</small>
+* [[Documentation/4.4/Extensions/MarginCalculator|Dose Population Histogram]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MarginCalculator|Margin Calculator]] extension)</small>
+* [[Documentation/4.4/Extensions/MarginCalculator|Motion Simulator]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MarginCalculator|Margin Calculator]] extension)</small>
 <span id='Modules_by_category_Mesh_Generation'></span>
 == Mesh Generation ==
@@ Line 301: / Line 297: @@
 <span id='Modules_by_category_Microscopy'></span>
 == Microscopy ==
+* [[Documentation/4.4/Extensions/IASEM|Bin Shrink]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
 * [[Documentation/4.4/Extensions/IASEM|Label Object Statistics]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
 * [[Documentation/4.4/Extensions/IASEM|Spacing Aware Curvature Diffusion]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
+* [[Documentation/4.4/Extensions/IASEM|IASEMImport Series]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
 * [[Documentation/4.4/Extensions/IASEM|IASEMImport]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
-* [[Documentation/4.4/Extensions/IASEM|IASEMImport Series]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
-* [[Documentation/4.4/Extensions/IASEM|Bin Shrink]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
 <span id='Modules_by_category_Multidimensional_data'></span>
 == Multidimensional data ==
@@ Line 335: / Line 331: @@
 == Quantification ==
 * [[Documentation/4.4/Modules/dPetBrainQuantification|d Pet Brain Quantification]]    <small>(scripted, bundled in [http://gti-fing.github.io/SlicerPetSpectAnalysis Pet Spect Analysis] extension)</small>
-* [[Documentation/4.4/Modules/PkModeling|Pk Modeling]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/PkModeling|Pk Modeling]] extension)</small>
 * [[Documentation/4.4/Modules/QuantitativeIndicesCLI|Quantitative Indices CLI]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/PET-IndiC|PET-Indi C]] extension)</small>
 * [[Documentation/4.4/Modules/PETStandardUptakeValueComputation|PETStandard Uptake Value Computation]]    <small>(cli, built-in)</small>
-* [[Documentation/4.4/Modules/SUVFactorCalculator|SUVFactor Calculator]]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] extension)</small>
+* [[Documentation/4.4/Modules/SUVFactorCalculator|SUVFactor Calculator]]    <small>(cli, bundled in [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] extension)</small>
 * [[Documentation/4.4/Modules/SpinalCurvatureMeasurement|Spinal Curvature Measurement]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/Scoliosis|Scoliosis]] extension)</small>
 * [[Documentation/4.4/Extensions/PET-IndiC|PETIndi C]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PET-IndiC|PET-Indi C]] extension)</small>
+* [[Documentation/4.4/Modules/PkModeling|Pk Modeling]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/PkModeling|Pk Modeling]] extension)</small>
+* [[Documentation/4.4/Extensions/PET-IndiC|Quantitative Indices Tool]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PET-IndiC|PET-Indi C]] extension)</small>
 * [[Documentation/4.4/Modules/HeterogeneityCAD|Heterogeneity CAD]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/OpenCAD|Open CAD]] extension)</small>
-* [[Documentation/4.4/Modules/LabelStatistics|Label Statistics]]    <small>(scripted, built-in)</small>
+* [[Documentation/4.4/Extensions/LongitudinalPETCT|PETSUVImage Maker]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]] extension)</small>
 * [[Documentation/4.4/Modules/DiceComputation|Dice Computation]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/DiceComputation|Dice Computation]] extension)</small>
-* [[Documentation/4.4/Extensions/LongitudinalPETCT|PETSUVImage Maker]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]] extension)</small>
 * [[Documentation/4.4/Modules/DataProbe|Data Probe]]    <small>(scripted, built-in)</small>
-* [[Documentation/4.4/Extensions/PET-IndiC|Quantitative Indices Tool]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PET-IndiC|PET-Indi C]] extension)</small>
 <span id='Modules_by_category_Quantification_ChangeQuantification'></span>
 === ChangeQuantification ===
@@ Line 357: / Line 352: @@
 * [[Documentation/4.4/Extensions/SlicerRT|Dvh Comparison]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 * [[Documentation/4.4/Modules/Isodose|Isodose]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
+* [[Documentation/4.4/Modules/Contours|Contours]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 * [[Documentation/4.4/Modules/DoseAccumulation|Dose Accumulation]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 * [[Documentation/4.4/Modules/DicomRtExport|Dicom Rt Export]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 * [[Documentation/4.4/Modules/DoseComparison|Dose Comparison]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 * [[Documentation/4.4/Modules/ContourMorphology|Contour Morphology]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
-* [[Documentation/4.4/Extensions/SlicerRT|Planar Image]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
-* [[Documentation/4.4/Modules/Contours|Contours]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 * [[Documentation/4.4/Modules/DicomSroImport|Dicom Sro Import]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 * [[Documentation/4.4/Modules/DoseVolumeHistogram|Dose Volume Histogram]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
+* [[Documentation/4.4/Extensions/SlicerRT|Planar Image]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 <span id='Modules_by_category_Registration'></span>
 == Registration ==
@@ Line 370: / Line 365: @@
 * [[Documentation/4.4/Modules/Transforms|Transforms]]    <small>(loadable, built-in)</small>
 * BRAINSResize    <small>(cli, built-in)</small>
-* [[Documentation/4.4/Modules/LandmarkRegistration|Landmark Registration]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
+* [[Documentation/4.4/Modules/LandmarkRegistration|Landmark Registration]]    <small>(scripted, built-in)</small>
 * [[Documentation/4.4/Modules/BRAINSFit|BRAINSFit]]    <small>(cli, built-in)</small>
 * [[Documentation/4.4/Extensions/PBNRR|PBNRR]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/PBNRR|PBNRR]] extension)</small>
@@ Line 383: / Line 378: @@
 <span id='Modules_by_category_Segmentation'></span>
 == Segmentation ==
-* [[Documentation/4.4/Modules/Editor|Editor]]    <small>(scripted, built-in)</small>
+* [[Documentation/4.4/Modules/AirwaySegmentation|Airway Segmentation]]    <small>(scripted, bundled in [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation] extension)</small>
+* [[Documentation/4.4/Extensions/MABMIS|IGR3D MABMIS Training]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/MABMIS|MABMIS]] extension)</small>
+* [https://github.com/Tomnl/Slicer-Wasp Wasp]    <small>(scripted, bundled in [https://github.com/Tomnl/Slicer-Wasp Wasp] extension)</small>
+* [[Documentation/4.4/Modules/ABC|ABC]]    <small>(cli, bundled in [http://www.nitrc.org/projects/abc ABC] extension)</small>
 * EMSegment Quick    <small>(loadable, built-in)</small>
 * [[Documentation/4.4/Modules/SimpleRegionGrowingSegmentation|Simple Region Growing Segmentation]]    <small>(cli, built-in)</small>
@@ Line 392: / Line 390: @@
 * [[Documentation/4.4/Extensions/AirwaySegmentation|Airway Segmentation CLI]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/AirwaySegmentation|Airway Segmentation]] extension)</small>
 * [[Documentation/4.4/Modules/LAScarSegmenter|LAScar Segmenter]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/LAScarSegmenter|LAScar Segmenter]] extension)</small>
-* [[Documentation/4.4/Extensions/MABMIS|IGR3D MABMIS Training]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/MABMIS|MABMIS]] extension)</small>
+* [[Documentation/4.4/Modules/SobolevSegmenter|Sobolev Segmenter]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/SobolevSegmenter|Sobolev Segmenter]] extension)</small>
 * [[Documentation/4.4/Extensions/VolumeClip|Volume Clip With Model]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/VolumeClip|Volume Clip]] extension)</small>
 * [[Documentation/4.4/Extensions/MABMIS|IGR3D MABMIS Testing]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/MABMIS|MABMIS]] extension)</small>
-* [[Documentation/4.4/Modules/SobolevSegmenter|Sobolev Segmenter]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/SobolevSegmenter|Sobolev Segmenter]] extension)</small>
-* [http://www.nitrc.org/projects/abc ABC]    <small>(cli, bundled in [http://www.nitrc.org/projects/abc ABC] extension)</small>
 * [[Documentation/4.4/Extensions/IntensitySegmenter|Intensity Segmenter]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/IntensitySegmenter|Intensity Segmenter]] extension)</small>
 <span id='Modules_by_category_Segmentation_Specialized'></span>
@@ Line 406: / Line 402: @@
 == Shape Analysis ==
 * [[Documentation/4.4/Extensions/MeshToLabelMap|Mesh To Label Map]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/MeshToLabelMap|Mesh To Label Map]] extension)</small>
-* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AnglePlanes Angle Planes]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AnglePlanes Angle Planes Extension] extension)</small>
+* [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/AnglePlanes Angle Planes]    <small>(scripted, bundled in [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/AnglePlanes Angle Planes Extension] extension)</small>
-* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MeshStatistics Mesh Statistics]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MeshStatistics Mesh Statistics Extension] extension)</small>
+* [[Documentation/4.4/Extensions/ModelToModelDistance|Model To Model Distance]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/ModelToModelDistance|Model To Model Distance]] extension)</small>
-* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/EasyClip Easy Clip]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/EasyClip Easy Clip] extension)</small>
+* [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/MeshStatistics Mesh Statistics]    <small>(scripted, bundled in [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/MeshStatistics Mesh Statistics Extension] extension)</small>
-* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PickAndPaint Pick And Paint]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PickAndPaint Pick And Paint Extension] extension)</small>
+* [[Documentation/4.4/Extensions/EasyClip|Easy Clip]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/EasyClip|Easy Clip]] extension)</small>
-* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/Q3DC Q3DC]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/Q3DC Q3DC] extension)</small>
+* [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/PickAndPaint Pick And Paint]    <small>(scripted, bundled in [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/PickAndPaint Pick And Paint Extension] extension)</small>
+* [[Documentation/4.4/Extensions/Q3DC|Q3DC]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/Q3DC|Q3DC]] extension)</small>
+<span id='Modules_by_category_Shape_Analysis_CMF_Registration'></span>
+=== CMF Registration ===
+* [[Documentation/4.4/Extensions/CMFreg|Apply Matrix]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
+* [[Documentation/4.4/Modules/SurfaceRegistration|Surface Registration]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
+* [[Documentation/4.4/Modules/LabelExtraction|Label Extraction]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
+* [[Documentation/4.4/Modules/LabelAddition|Label Addition]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
+* [[Documentation/4.4/Modules/Downsize|Downsize]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
+<span id='Modules_by_category_CMF_Registration_Voxelbase_Registration'></span>
+==== Voxelbase Registration ====
+* [[Documentation/4.4/Modules/MaskCreation|Mask Creation]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
+* [[Documentation/4.4/Modules/NonGrowing|Non Growing]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
+* [[Documentation/4.4/Modules/Growing|Growing]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
 <span id='Modules_by_category_Slicelets'></span>
 == Slicelets ==
-* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
+* [http://www.slicer.org/wiki/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis]    <small>(scripted, bundled in [http://www.slicer.org/wiki/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
-* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis Algo]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
+* [http://www.slicer.org/wiki/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis Algo]    <small>(loadable, bundled in [http://www.slicer.org/wiki/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
 <span id='Modules_by_category_Surface_Models'></span>
 == Surface Models ==
@@ Line 420: / Line 429: @@
 * [[Documentation/4.4/Modules/MergeModels|Merge Models]]    <small>(cli, built-in)</small>
 * [[Documentation/4.4/Modules/SurfaceToolbox|Surface Toolbox]]    <small>(scripted, built-in)</small>
-* [[Documentation/4.4/Modules/LabelMapSmoothing|Label Map Smoothing]]    <small>(cli, built-in)</small>
 * [[Documentation/4.4/Modules/ProbeVolumeWithModel|Probe Volume With Model]]    <small>(cli, built-in)</small>
 * [[Documentation/4.4/Modules/ModelMaker|Model Maker]]    <small>(cli, built-in)</small>
 * [[Documentation/4.4/Modules/GrayscaleModelMaker|Grayscale Model Maker]]    <small>(cli, built-in)</small>
+* [[Documentation/4.4/Modules/LabelMapSmoothing|Label Map Smoothing]]    <small>(cli, built-in)</small>
 <span id='Modules_by_category_Testing'></span>
 == Testing ==
@@ Line 435: / Line 444: @@
 <span id='Modules_by_category_Testing_IGT_Tests'></span>
 === IGT Tests ===
+* Breach Warning Self Test
 * Watchdog Self Test
-* Breach Warning Self Test
 <span id='Modules_by_category_Testing_SlicerRT_Tests'></span>
 === SlicerRT Tests ===
@@ Line 449: / Line 458: @@
 * Volume Rendering Scene Close    <small>(scripted, built-in)</small>
 * test tractography display
-* Subject Hierarchy Core Plugins Self Test
 * slicer Close Crash Bug2590
 * Subject Hierarchy Generic Self Test
+* Scene Performance    <small>(scripted, built-in)</small>
 * Charting    <small>(scripted, built-in)</small>
-* label Toggle Bug2049
-* Scene Performance    <small>(scripted, built-in)</small>
 * Neurosurgical Planning Tutorial Markups Self Test
 * Markups In Compare Viewers Self Test
@@ Line 464: / Line 471: @@
 * RSNA2012Prostate Demo
 * Add Many Markups Fiducial Test
+* Colors Scalar Bar Self Test
 * Markups In Views Self Test
-* Colors Scalar Bar Self Test
+* Subject Hierarchy Core Plugins Self Test
-* Slicer4Minute    <small>(scripted, built-in)</small>
 * Change Tracker Self Test
 * Fiducial Layout Switch Bug1914
 * View Controllers Slice Interpolation Bug1926
+* Slicer4Minute    <small>(scripted, built-in)</small>
+* label Toggle Bug2049
 <span id='Modules_by_category_Unspecified'></span>
 == Unspecified ==
@@ Line 484: / Line 493: @@
 <span id='Modules_by_category_Vascular_Modeling_Toolkit'></span>
 == Vascular Modeling Toolkit ==
+* [http://slicer.vmtk.org/ Vesselness Filtering]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 * [http://slicer.vmtk.org/ Centerline Computation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
-* [http://slicer.vmtk.org/ Vesselness Filtering]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 * [http://slicer.vmtk.org/ Level Set Segmentation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 <span id='Modules_by_category_Wizards'></span>
 == Wizards ==
-* [[Documentation/4.4/Modules/CompareVolumes|Compare Volumes]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
+* [[Documentation/4.4/Modules/CompareVolumes|Compare Volumes]]    <small>(scripted, built-in)</small>
 * [[Documentation/4.4/Modules/ChangeTracker|Change Tracker]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/ChangeTracker|Change Tracker]] extension)</small>
 <span id='Modules_by_category_Work_in_Progress'></span>
@@ Line 505: / Line 514: @@
 * Label To DICOMSEGConverter Self Test
 = Modules by name =
 modules:
-* [http://www.nitrc.org/projects/abc ABC]    <small>(cli, bundled in [http://www.nitrc.org/projects/abc ABC] extension)</small>
+* [[Documentation/4.4/Modules/ABC|ABC]]    <small>(cli, bundled in [http://www.nitrc.org/projects/abc ABC] extension)</small>
 * [[Documentation/4.4/Modules/ACPCTransform|ACPCTransform]]    <small>(cli, built-in)</small>
 * [[Documentation/4.4/Modules/AddScalarVolumes|Add Scalar Volumes]]    <small>(cli, built-in)</small>
+* [[Documentation/4.4/Modules/AirwaySegmentation|Airway Segmentation]]    <small>(scripted, bundled in [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation] extension)</small>
 * [[Documentation/4.4/Extensions/AirwaySegmentation|Airway Segmentation CLI]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/AirwaySegmentation|Airway Segmentation]] extension)</small>
-* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AnglePlanes Angle Planes]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AnglePlanes Angle Planes Extension] extension)</small>
+* [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/AnglePlanes Angle Planes]    <small>(scripted, bundled in [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/AnglePlanes Angle Planes Extension] extension)</small>
 * [[Documentation/4.4/Modules/Annotations|Annotations]]    <small>(loadable, built-in)</small>
 * [[Documentation/4.4/Extensions/CMFreg|Apply Matrix]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
@@ Line 526: / Line 536: @@
 * BRAINSTransform Convert    <small>(cli, built-in)</small>
 * [[Documentation/4.4/Extensions/SlicerIGT|Breach Warning]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
-* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]    <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
+* [http://wiki.slicer.org/wiki/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]    <small>(loadable, bundled in [http://wiki.slicer.org/wiki/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
 * [[Documentation/4.4/Modules/CastScalarVolume|Cast Scalar Volume]]    <small>(cli, built-in)</small>
 * [http://slicer.vmtk.org/ Centerline Computation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
@@ Line 544: / Line 554: @@
 * [[Documentation/4.4/Modules/CollectFiducials|Collect Fiducials]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 * [[Documentation/4.4/Modules/Colors|Colors]]    <small>(loadable, built-in)</small>
-* [[Documentation/4.4/Modules/CompareVolumes|Compare Volumes]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
+* [[Documentation/4.4/Modules/CompareVolumes|Compare Volumes]]    <small>(scripted, built-in)</small>
 * [[Documentation/4.4/Modules/ContourComparison|Contour Comparison]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 * [[Documentation/4.4/Modules/ContourMorphology|Contour Morphology]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
@@ Line 570: / Line 580: @@
 * [[Documentation/4.4/Modules/DoseAccumulation|Dose Accumulation]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 * [[Documentation/4.4/Modules/DoseComparison|Dose Comparison]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
+* [[Documentation/4.4/Extensions/MarginCalculator|Dose Morphology]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MarginCalculator|Margin Calculator]] extension)</small>
+* [[Documentation/4.4/Extensions/MarginCalculator|Dose Population Histogram]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MarginCalculator|Margin Calculator]] extension)</small>
 * [[Documentation/4.4/Modules/DoseVolumeHistogram|Dose Volume Histogram]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
 * [[Documentation/4.4/Modules/Downsize|Downsize]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
@@ Line 580: / Line 592: @@
 * [[Documentation/4.4/Modules/DWIRicianLMMSEFilter|DWIRician LMMSEFilter]]    <small>(cli, built-in)</small>
 * [[Documentation/4.4/Modules/DWIToDTIEstimation|DWITo DTIEstimation]]    <small>(cli, built-in)</small>
-* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/EasyClip Easy Clip]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/EasyClip Easy Clip] extension)</small>
+* [[Documentation/4.4/Extensions/EasyClip|Easy Clip]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/EasyClip|Easy Clip]] extension)</small>
-* [[Documentation/4.4/Modules/Editor|Editor]]    <small>(scripted, built-in)</small>
 * [[Documentation/4.4/Modules/EMSegment|EMSegment]]    <small>(loadable, built-in)</small>
 * EMSegment Command Line    <small>(cli, built-in)</small>
@@ Line 589: / Line 600: @@
 * [[Documentation/4.4/Extensions/ErodeDilateLabel|Erode Label]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/ErodeDilateLabel|Erode Dilate Label]] extension)</small>
 * [[Documentation/4.4/Modules/ExtractSkeleton|Extract Skeleton]]    <small>(cli, built-in)</small>
-* [[Documentation/4.4/Modules/FastGrowCut|Fast Grow Cut]]    <small>(loadable, bundled in [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect] extension)</small>
+* [[Documentation/4.4/Modules/FastGrowCut|Fast Grow Cut]]    <small>(loadable, bundled in [https://www.slicer.org/wiki/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect] extension)</small>
-* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Fast Grow Cut Segmenter]    <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
+* [http://wiki.slicer.org/wiki/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Fast Grow Cut Segmenter]    <small>(loadable, bundled in [http://wiki.slicer.org/wiki/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
 * Fiber Bundle Label Select    <small>(cli, built-in)</small>
 * [[Documentation/4.4/Modules/FiberBundleToLabelMap|Fiber Bundle To Label Map]]    <small>(scripted, built-in)</small>
@@ Line 600: / Line 611: @@
 * [[Documentation/4.4/Modules/FinslerTractography|Finsler Tractography]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/FinslerTractography|Finsler Tractography]] extension)</small>
 * [[Documentation/4.4/Modules/GaussianBlurImageFilter|Gaussian Blur Image Filter]]    <small>(cli, built-in)</small>
-* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
+* [http://www.slicer.org/wiki/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis]    <small>(scripted, bundled in [http://www.slicer.org/wiki/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
-* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis Algo]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
+* [http://www.slicer.org/wiki/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis Algo]    <small>(loadable, bundled in [http://www.slicer.org/wiki/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
 * [[Documentation/4.4/Modules/GradientAnisotropicDiffusion|Gradient Anisotropic Diffusion]]    <small>(cli, built-in)</small>
 * [[Documentation/4.4/Modules/GrayscaleFillHoleImageFilter|Grayscale Fill Hole Image Filter]]    <small>(cli, built-in)</small>
@@ Line 619: / Line 630: @@
 * [[Documentation/4.4/Extensions/IntensitySegmenter|Intensity Segmenter]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/IntensitySegmenter|Intensity Segmenter]] extension)</small>
 * [[Documentation/4.4/Modules/Isodose|Isodose]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerRT|Slicer RT]] extension)</small>
-* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter KUtil]    <small>(scripted, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
+* [http://wiki.slicer.org/wiki/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter KUtil]    <small>(scripted, bundled in [http://wiki.slicer.org/wiki/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
 * [[Documentation/4.4/Modules/LabelAddition|Label Addition]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
 * [[Documentation/4.4/Modules/LabelExtraction|Label Extraction]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
 * [[Documentation/4.4/Modules/LabelMapSmoothing|Label Map Smoothing]]    <small>(cli, built-in)</small>
 * [[Documentation/4.4/Extensions/IASEM|Label Object Statistics]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/IASEM|IASEM]] extension)</small>
-* [[Documentation/4.4/Modules/LabelStatistics|Label Statistics]]    <small>(scripted, built-in)</small>
 * [[Documentation/4.4/Extensions/Reporting|Label To DICOMSEGConverter]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/Reporting|Reporting]] extension)</small>
-* [[Documentation/4.4/Modules/LandmarkRegistration|Landmark Registration]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
+* [[Documentation/4.4/Modules/LandmarkRegistration|Landmark Registration]]    <small>(scripted, built-in)</small>
 * [[Documentation/4.4/Modules/LAScarSegmenter|LAScar Segmenter]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/LAScarSegmenter|LAScar Segmenter]] extension)</small>
 * [[Documentation/4.4/Modules/LASegmentationWorkflow|LASegmentation Workflow]]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 * [http://slicer.vmtk.org/ Level Set Segmentation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 * [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]] extension)</small>
+* [[Documentation/4.4/Extensions/MarginCalculator|Margin Calculator]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/MarginCalculator|Margin Calculator]] extension)</small>
 * [[Documentation/4.4/Modules/Markups|Markups]]    <small>(loadable, built-in)</small>
 * [[Documentation/4.4/Modules/MaskCreation|Mask Creation]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
@@ Line 638: / Line 649: @@
 * [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|Merge Stat With Fiber]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small>
 * [[Documentation/4.4/Modules/MeshCompression|Mesh Compression]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]] extension)</small>
-* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MeshStatistics Mesh Statistics]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MeshStatistics Mesh Statistics Extension] extension)</small>
+* [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/MeshStatistics Mesh Statistics]    <small>(scripted, bundled in [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/MeshStatistics Mesh Statistics Extension] extension)</small>
 * [[Documentation/4.4/Extensions/MeshToLabelMap|Mesh To Label Map]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/MeshToLabelMap|Mesh To Label Map]] extension)</small>
 * [[Documentation/4.4/Extensions/MultidimData|Metafile Importer]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MultidimData|Multidim Data]] extension)</small>
@@ Line 645: / Line 656: @@
 * [[Documentation/4.4/Modules/Models|Models]]    <small>(loadable, built-in)</small>
 * [[Documentation/4.4/Modules/ModelToLabelMap|Model To Label Map]]    <small>(cli, built-in)</small>
+* [[Documentation/4.4/Extensions/ModelToModelDistance|Model To Model Distance]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/ModelToModelDistance|Model To Model Distance]] extension)</small>
+* [[Documentation/4.4/Extensions/MarginCalculator|Motion Simulator]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MarginCalculator|Margin Calculator]] extension)</small>
+* [[Documentation/4.4/Extensions/MarginCalculator|Motion Simulator Double Array]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MarginCalculator|Margin Calculator]] extension)</small>
 * [[Documentation/4.4/Modules/MultiplyScalarVolumes|Multiply Scalar Volumes]]    <small>(cli, built-in)</small>
 * [[Documentation/4.4/Modules/MultiVolumeExplorer|Multi Volume Explorer]]    <small>(loadable, built-in)</small>
@@ Line 663: / Line 677: @@
 * [[Documentation/4.4/Extensions/LongitudinalPETCT|PETSUVImage Maker]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/LongitudinalPETCT|Longitudinal PETCT]] extension)</small>
 * [[Documentation/4.4/Extensions/PETTumorSegmentation|PETTumor Segmentation]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/PETTumorSegmentation|PETTumor Segmentation]] extension)</small>
-* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PickAndPaint Pick And Paint]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PickAndPaint Pick And Paint Extension] extension)</small>
+* [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/PickAndPaint Pick And Paint]    <small>(scripted, bundled in [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/PickAndPaint Pick And Paint Extension] extension)</small>
 * [[Documentation/4.4/Extensions/SlicerIGT|Pivot Calibration]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 * [[Documentation/4.4/Modules/PkModeling|Pk Modeling]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/PkModeling|Pk Modeling]] extension)</small>
@@ Line 675: / Line 689: @@
 * [[Documentation/4.4/Modules/ProbeVolumeWithModel|Probe Volume With Model]]    <small>(cli, built-in)</small>
 * [[Documentation/4.4/Extensions/PerkTutor|Python Metrics Calculator]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PerkTutor|Perk Tutor]] extension)</small>
-* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/Q3DC Q3DC]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/Q3DC Q3DC] extension)</small>
+* [[Documentation/4.4/Extensions/Q3DC|Q3DC]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/Q3DC|Q3DC]] extension)</small>
 * [[Documentation/4.4/Modules/QuantitativeIndicesCLI|Quantitative Indices CLI]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/PET-IndiC|PET-Indi C]] extension)</small>
 * [[Documentation/4.4/Extensions/PET-IndiC|Quantitative Indices Tool]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/PET-IndiC|PET-Indi C]] extension)</small>
 * [[Documentation/4.4/Modules/Reformat|Reformat]]    <small>(loadable, built-in)</small>
 * [[Documentation/4.4/Extensions/Reporting|Reporting]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/Reporting|Reporting]] extension)</small>
-* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ResampleDTIlogEuclidean Resample DTIlog Euclidean]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ResampleDTIlogEuclidean Resample DTIlog Euclidean] extension)</small>
+* [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/ResampleDTIlogEuclidean Resample DTIlog Euclidean]    <small>(cli, bundled in [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/ResampleDTIlogEuclidean Resample DTIlog Euclidean] extension)</small>
 * [[Documentation/4.4/Modules/ResampleDTIVolume|Resample DTIVolume]]    <small>(cli, built-in)</small>
 * [[Documentation/4.4/Modules/ResampleScalarVectorDWIVolume|Resample Scalar Vector DWIVolume]]    <small>(cli, built-in)</small>
@@ Line 688: / Line 702: @@
 * [[Documentation/4.4/Modules/ScarVisualization|Scar Visualization]]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 * [[Documentation/4.4/Modules/SceneViews|Scene Views]]    <small>(loadable, built-in)</small>
-* [[Documentation/4.4/Modules/SegmentationAidedRegistration|Segmentation Aided Registration]]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small>
+* [[Documentation/4.4/Modules/SegmentationAidedRegistration|Segmentation Aided Registration]]    <small>(cli, bundled in [http://www.slicer.org/wiki/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small>
 * [[Documentation/4.4/Modules/SegmentCAD|Segment CAD]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/OpenCAD|Open CAD]] extension)</small>
 * [[Documentation/4.4/Extensions/MultidimData|Sequence Browser]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/MultidimData|Multidim Data]] extension)</small>
@@ Line 700: / Line 714: @@
 * [[Documentation/4.4/Modules/SubjectHierarchy|Subject Hierarchy]]    <small>(loadable, built-in)</small>
 * [[Documentation/4.4/Modules/SubtractScalarVolumes|Subtract Scalar Volumes]]    <small>(cli, built-in)</small>
-* [[Documentation/4.4/Extensions/CMFreg|Surface Registration]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
+* [[Documentation/4.4/Modules/SurfaceRegistration|Surface Registration]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/CMFreg|CMFreg]] extension)</small>
 * [[Documentation/4.4/Modules/SurfaceToolbox|Surface Toolbox]]    <small>(scripted, built-in)</small>
-* [[Documentation/4.4/Modules/SUVFactorCalculator|SUVFactor Calculator]]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] extension)</small>
+* [[Documentation/4.4/Modules/SUVFactorCalculator|SUVFactor Calculator]]    <small>(cli, bundled in [http://www.slicer.org/wiki/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] extension)</small>
 * [[Documentation/4.4/Modules/SwissSkullStripper|Swiss Skull Stripper]]    <small>(cli, bundled in [[Documentation/4.4/Extensions/SwissSkullStripper|Swiss Skull Stripper]] extension)</small>
+* [[Documentation/4.4/Extensions/MarginCalculator|Synthetic RTDose]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/MarginCalculator|Margin Calculator]] extension)</small>
 * [[Documentation/4.4/Extensions/TCIABrowser|TCIABrowser]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/TCIABrowser|TCIABrowser]] extension)</small>
 * [[Documentation/4.4/Modules/ThingiverseBrowser|Thingiverse Browser]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/ThingiverseBrowser|Thingiverse Browser]] extension)</small>
@@ Line 728: / Line 743: @@
 * [[Documentation/4.4/Modules/Volumes|Volumes]]    <small>(loadable, built-in)</small>
 * [[Documentation/4.4/Modules/VotingBinaryHoleFillingImageFilter|Voting Binary Hole Filling Image Filter]]    <small>(cli, built-in)</small>
+* [https://github.com/Tomnl/Slicer-Wasp Wasp]    <small>(scripted, bundled in [https://github.com/Tomnl/Slicer-Wasp Wasp] extension)</small>
 * [[Documentation/4.4/Extensions/SlicerIGT|Watchdog]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 * [[Documentation/4.4/Modules/Welcome|Welcome]]    <small>(loadable, built-in)</small>
 * [[Documentation/4.4/Extensions/WindowLevelEffect|Window Level Effect]]    <small>(scripted, bundled in [[Documentation/4.4/Extensions/WindowLevelEffect|Window Level Effect]] extension)</small>
 * [[Documentation/4.4/Modules/WorkflowSegmentation|Workflow Segmentation]]    <small>(loadable, bundled in [[Documentation/4.4/Extensions/PerkTutor|Perk Tutor]] extension)</small>

Difference between revisions of "Documentation/4.4/ModuleExtensionListing"

Latest revision as of 17:32, 21 November 2019

Modules by category

BRAINS

LabelStatistics

Cardiac MRI Toolkit

Converters

Developer Tools

DICOM Plugins

Editor Extensions

Matlab

Diffusion

Diffusion Data Conversion

Diffusion Tensor Images

Diffusion Weighted Images

FiberAnalysis

Tractography

Editor Effects

EditorEffect

Endoscopy

Examples

Exporter

File

Filtering

Arithmetic

Denoising

Morphology

IGT

Informatics

Legacy

Converters

Diffusion

Denoising

Diffusion Data Conversion

Filtering

Registration

Work in Progress

Diffusion Tensor

Test

Margin Calculator

Mesh Generation

MeshGeneration

Microscopy

Multidimensional data

MultiVolume Support

Perk Tutor

Plastimatch

Registration

Utilities

Quantification

ChangeQuantification

Radiotherapy

Registration

Specialized

Segmentation

Specialized

Shape Analysis

CMF Registration

Voxelbase Registration

Slicelets

Surface Models

Testing

IGT Tests

SlicerRT Tests

TestCases

Unspecified

Utilities

BRAINS

Vascular Modeling Toolkit

Wizards

Work in Progress

Converters

Informatics

TestCases

Modules by name

Navigation menu

Search