User:UpdateBot/Issue-2843-Consolidated-Extension-List/Nightly

Where to start ? Training pages Information on how to use Slicer Issue-2843-Consolidated-Extension-List FAQ Set of common questions/answers Users mailing list / Sign-up / Browse archives How to Report a problem / Create a feature request   NEW Slicer Application [[[:Template:Documentation/Issue-2843-Consolidated-Extension-List/slicer-manual-base-url]]/user_guide/getting_started.html#installing-3d-slicer Installation / Uninstallation] [[[:Template:Documentation/Issue-2843-Consolidated-Extension-List/slicer-manual-base-url]]/user_guide/user_interface.html Main Application User-Interface] [[[:Template:Documentation/Issue-2843-Consolidated-Extension-List/slicer-manual-base-url]]/user_guide/settings.html Application Settings] [[[:Template:Documentation/Issue-2843-Consolidated-Extension-List/slicer-manual-base-url]]/user_guide/modules/extensions_manager.html Extensions Manager] [[[:Template:Documentation/Issue-2843-Consolidated-Extension-List/slicer-manual-base-url]]/user_guide/user_interface.html#mouse-keyboard-shortcuts Mouse Buttons, "Hot-keys" and Keyboard Shortcuts] [[[:Template:Documentation/Issue-2843-Consolidated-Extension-List/slicer-manual-base-url]]/user_guide/getting_started.html#recommended-hardware-configuration Recommended Computer Configurations] [[[:Template:Documentation/Issue-2843-Consolidated-Extension-List/slicer-manual-base-url]]/user_guide/data_loading_and_saving.html Loading or saving data] and listing of [[[:Template:Documentation/Issue-2843-Consolidated-Extension-List/slicer-manual-base-url]]/user_guide/data_loading_and_saving.html#supported-data-formats supported data formats] Slicer Lookup Tables Setting up and using stereoscopic viewing QtTesting - Easy way to record and play macros		Module Categories Modules by category Modules by name Modules by contributing organization Modules by contributing individual Modules by type Modules by extension Extensions by category Extensions by name Extensions by contributing organization Extensions by contributing individual List of extensions known to be broken		Developers Corner Information for Software Developers Source code, contribute patch, develop modules Developers mailing list / Browse archives Intended for discussion of programming related questions Miscellaneous Documentation guidelines Slicer user documentation principle and guidelines Visual blog Set of screenshots showing Slicer in action. Release Notes Platform specific issues and considerations Announcements & Acknowledgments Slicer Registration Case Library Real-life example cases of using the Slicer registration tools, incl. datasets and step-by-step instructions to follow and try yourself. Documentación en Español   NEW Introducción a 3D Slicer en Español Breve descripción de proyecto y un breve viaje por sus principales herramientas y funcionalidades. Reconstrucciones volumétricas con 3D Slicer Guía de uso para la herramienta de creación de reconstrucciones volumétricas de 3D Slicer. Crear modelos/contornos de órganos con 3D Slicer Guía rápida introductoria para la creación de contornos de órganos para generar vistas volumétricas. Endoscopías virtuales con 3D Slicer Manual de uso de la herramienta para 3D Slicer desarrollada por Steve Pieper para realizar endoscopías virtuales. Creando curvas de isodosis con SlicerRT de 3D Slicer Introducción a la extensión SlicerRT para 3D Slicer enfocada en investigación en radioterapia.

Modules by category

36 categories:

• BRAINS
  • Label Statistics
• Cardiac MRI Toolkit
• CMF Registration
  • Voxelbase Registration
• Converters
• Developer Tools
  • DICOM Plugins
  • Editor Extensions
  • Matlab
• Diffusion
  • Diffusion Data Conversion
  • Diffusion Tensor Images
  • Diffusion Weighted Images
  • Fiber Analysis
  • Tractography
• Editor Effects
• Editor Effect
• Endoscopy
• Examples
• Exporter
• Filtering
  • Arithmetic
  • Denoising
  • Morphology
• IGT
• Informatics
• Legacy
  • Converters
  • Diffusion
    • Denoising
    • Diffusion Data Conversion
  • Filtering
  • Registration
  • Work in Progress
    • Diffusion Tensor
      • Test
• Mesh Generation
• Mesh Generation
• Microscopy
• Multi Volume Support
• Perk Tutor
• Plastimatch
  • Registration
  • Utilities
• Quantification
  • Change Quantification
• Radiotherapy
• Registration
  • Label Registration
  • Specialized
• Segmentation
  • Specialized
• Sequences
• Shape Analysis
• Slicelets
• Surface Models
• Testing
  • IGT Tests
  • Test Cases
• Unspecified
• Utilities
  • BRAINS
• Vascular Modeling Toolkit
• Wizards
• Work in Progress
  • Converters
  • Informatics
    • Test Cases
• XNATSlicer

BRAINS

LabelStatistics

• BRAINSLabel Stats (cli, built-in)

Cardiac MRI Toolkit

• CMRToolkit Connected Threshold Filter (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Isolated Connected Filter (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Wizard (scripted, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Inhomogeneity Correction (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit PVAntrum Cut (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Axial Dilate (cli, bundled in Cardiac MRI Toolkit extension)
• Scar Visualization (scripted, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Boolean REMOVEFilter (cli, bundled in Cardiac MRI Toolkit extension)
• LASegmentation Workflow (scripted, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Automatic Left Atrial Scar (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Registration (scripted, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Registration BRAINSFit (scripted, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit LASegmentation Graph Cuts (cli, bundled in Cardiac MRI Toolkit extension)

CMF Registration

• Apply Matrix (cli, bundled in CMFreg extension)
• Landmark Registration (scripted, bundled in CMFreg extension)
• Surface Registration (scripted, bundled in CMFreg extension)
• Label Extraction (cli, bundled in CMFreg extension)
• Label Addition (cli, bundled in CMFreg extension)
• Downsize (cli, bundled in CMFreg extension)

Voxelbase Registration

• Mask Creation (cli, bundled in CMFreg extension)
• Non Growing (cli, bundled in CMFreg extension)
• Growing (cli, bundled in CMFreg extension)

Converters

• Vector To Scalar Volume (scripted, built-in)
• Crop Volume (loadable, built-in)
• Orient Scalar Volume (cli, built-in)
• Quad Edge Surface Mesher (cli, bundled in Slicer Prostate extension)
• Create DICOMSeries (cli, built-in)

Developer Tools

• Event Broker
• Execution Model Tour (cli, built-in)
• Double Arrays (loadable, built-in)
• Py Dev Remote Debug (scripted, bundled in Py Dev Remote Debug extension)
• Cameras (loadable, built-in)
• Developer Tools For Extensions (scripted, bundled in Developer Tools For Extensions extension)
• Extension Wizard (scripted, built-in)
• Image Maker (cli, bundled in Image Maker extension)

DICOM Plugins

• DICOMLongitudinal PETCTPlugin
• DICOMRWVMPlugin
• Multi Volume Importer Plugin
• DICOMPETSUVPlugin
• DICOMDiffusion Volume Plugin
• Dicom Rt Import Export Plugin
• DICOMSegmentation Plugin
• Dicom Sro Import Plugin
• DICOMScalar Volume Plugin
• DICOMSlicer Data Bundle Plugin

Editor Extensions

• Binary Watershed Effect (scripted, bundled in IASEM extension)
• Fast Grow Cut Effect (scripted, bundled in Fast Grow Cut Effect extension)
• Carrera Slice Effect (scripted, bundled in Carrera Slice extension)
• Double Threshold Effect (scripted, bundled in IASEM extension)
• PETTumor Segmentation Effect (scripted, bundled in PETTumor Segmentation extension)

Matlab

• Matlab Commander (cli, bundled in Matlab Bridge extension)
• Matlab Module Generator (loadable, bundled in Matlab Bridge extension)

Diffusion

• Tractography Display (loadable, built-in)
• DICOM2Full Brain Tractography (scripted, built-in)

Diffusion Data Conversion

• DWIConvert (cli, built-in)

Diffusion Tensor Images

• Resample DTIVolume (cli, built-in)
• Diffusion Tensor Scalar Measurements (cli, built-in)
• Tractography Label Map Seeding (cli, built-in)
• Tractography Interactive Seeding (loadable, built-in)

Diffusion Weighted Images

• DWIRician LMMSEFilter (cli, built-in)
• Resample Scalar Vector DWIVolume (cli, built-in)
• DWITo DTIEstimation (cli, built-in)
• DWIJoint Rician LMMSEFilter (cli, built-in)
• Finsler Backtracing (cli, bundled in Finsler Tractography extension)
• Finsler Tractography (cli, bundled in Finsler Tractography extension)
• Diffusion Weighted Volume Masking (cli, built-in)

FiberAnalysis

• Fiber Compare (cli, bundled in DTIAtlas Fiber Analyzer extension)
• DTIAtlas Fiber Analyzer (cli, bundled in DTIAtlas Fiber Analyzer extension)
• Merge Stat With Fiber (cli, bundled in DTIAtlas Fiber Analyzer extension)
• dtitractstat (cli, bundled in DTIAtlas Fiber Analyzer extension)

Tractography

• Fiber Bundle To Label Map (scripted, built-in)
• Fiber Tract Measurements (cli, built-in)
• Fiber Bundle Label Select (cli, built-in)

Editor Effects

• Window Level Effect (scripted, bundled in Window Level Effect extension)

EditorEffect

• PETTumor Segmentation (loadable, bundled in PETTumor Segmentation extension)

Endoscopy

• Endoscopy (scripted, built-in)

Examples

• Fast Grow Cut (loadable, bundled in Fast Grow Cut Effect extension)
• Fast Grow Cut Segmenter (loadable, bundled in Carrera Slice extension)
• Carrera Slice (loadable, bundled in Carrera Slice extension)

Exporter

• Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)

Filtering

• Extract Skeleton (cli, built-in)
• Threshold Scalar Volume (cli, built-in)
• Segmentation Smoothing (cli, bundled in Slicer Prostate extension)
• N4ITKBias Field Correction (cli, built-in)
• Simple Filters (scripted, built-in)
• Image Label Combine (cli, built-in)
• Voting Binary Hole Filling Image Filter (cli, built-in)
• Histogram Matching (cli, built-in)
• Checker Board Filter (cli, built-in)

Arithmetic

• Multiply Scalar Volumes (cli, built-in)
• Add Scalar Volumes (cli, built-in)
• Cast Scalar Volume (cli, built-in)
• Subtract Scalar Volumes (cli, built-in)
• Mask Scalar Volume (cli, built-in)

Denoising

• Gradient Anisotropic Diffusion (cli, built-in)
• Median Image Filter (cli, built-in)
• Gaussian Blur Image Filter (cli, built-in)
• Curvature Anisotropic Diffusion (cli, built-in)

Morphology

• Grayscale Fill Hole Image Filter (cli, built-in)
• Grayscale Grind Peak Image Filter (cli, built-in)

IGT

• Light Weight Robot IGT (loadable, bundled in Light Weight Robot IGT extension)
• Volume Reslice Driver (loadable, bundled in Slicer IGT extension)
• Collect Fiducials (loadable, bundled in Slicer IGT extension)
• Create Models (loadable, bundled in Slicer IGT extension)
• Open IGTLink IF (loadable, built-in)
• Tracker Stabilizer (loadable, bundled in Tracker Stabilizer extension)
• Path Explorer (loadable, bundled in Slicer IGT extension)
• Ultrasound Snapshots (loadable, bundled in Slicer IGT extension)
• Transform Fusion (loadable, bundled in Slicer IGT extension)
• Breach Warning (loadable, bundled in Slicer IGT extension)
• Markups To Model (loadable, bundled in Slicer IGT extension)
• Gyro Guide (scripted, bundled in Gyro Guide extension)
• Fiducial Registration Wizard (loadable, bundled in Slicer IGT extension)
• Watchdog (loadable, bundled in Slicer IGT extension)
• Open IGTLink Remote (loadable, bundled in Slicer IGT extension)
• Plus Remote (scripted, bundled in Slicer IGT extension)
• i Gyne (scripted, bundled in i Gyne extension)
• Model Registration (scripted, bundled in Slicer IGT extension)
• Fiducials To Model Registration (scripted, bundled in Slicer IGT extension)
• Needle Finder (scripted, bundled in Needle Finder extension)
• Pivot Calibration (loadable, bundled in Slicer IGT extension)
• Corner Annotation (scripted, bundled in Corner Annotation extension)

Informatics

• Annotations (loadable, built-in)
• Markups (loadable, built-in)
• Units (loadable, built-in)
• DICOM (scripted, built-in)
• Sample Data (scripted, built-in)
• Data (loadable, built-in)
• Colors (loadable, built-in)
• Curve Maker (scripted, bundled in Curve Maker extension)
• Subject Hierarchy (loadable, built-in)
• TCIABrowser (scripted, bundled in TCIABrowser extension)

Legacy

Converters

• BSpline To Deformation Field (cli, built-in)

Diffusion

Denoising

• DWIUnbiased Non Local Means Filter (cli, built-in)

Diffusion Data Conversion

• DTIimport (cli, built-in)
• DTIexport (cli, built-in)

Filtering

• Otsu Threshold Image Filter (cli, built-in)
• Resample Scalar Volume (cli, built-in)

Registration

• Test Grid Transform Registration (cli, built-in)
• Expert Automated Registration (cli, built-in)

Work in Progress

Diffusion Tensor

Test

• Diffusion Tensor Test (cli, built-in)

Mesh Generation

• Cleaver CLI (cli, bundled in Cleaver Extension extension)

MeshGeneration

• Body Centric Cubic Mesh (cli, bundled in CBC 3D I2MConversion extension)
• Mesh Compression (cli, bundled in CBC 3D I2MConversion extension)

Microscopy

• Bin Shrink (cli, bundled in IASEM extension)
• Label Object Statistics (scripted, bundled in IASEM extension)
• Spacing Aware Curvature Diffusion (cli, bundled in IASEM extension)
• IASEMImport (cli, bundled in IASEM extension)
• IASEMImport Series (cli, bundled in IASEM extension)

MultiVolume Support

• Multi Volume Explorer (loadable, built-in)
• Multi Volume Importer (scripted, built-in)

Perk Tutor

• Python Metrics Calculator (scripted, bundled in Perk Tutor extension)
• Workflow Segmentation (loadable, bundled in Perk Tutor extension)
• Transform Recorder (loadable, bundled in Perk Tutor extension)
• Perk Evaluator (loadable, bundled in Perk Tutor extension)

Plastimatch

• Dicom Sro Export (scripted, bundled in Slicer RT extension)
• Plm Register (scripted, bundled in Slicer RT extension)

Registration

• plastimatch slicer bspline (cli, bundled in Slicer RT extension)
• plastimatch slicer landwarp (cli, bundled in Slicer RT extension)

Utilities

• Plastimatch Py (loadable, bundled in Slicer RT extension)

Quantification

• Quantitative Indices CLI (cli, bundled in PET-Indi C extension)
• PETStandard Uptake Value Computation (cli, built-in)
• SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
• Spinal Curvature Measurement (scripted, bundled in Scoliosis extension)
• PETIndi C (scripted, bundled in PET-Indi C extension)
• d Pet Brain Quantification (scripted, bundled in Pet Spect Analysis extension)
• Pk Modeling (cli, bundled in Pk Modeling extension)
• Heterogeneity CAD (scripted, bundled in Open CAD extension)
• Label Statistics (scripted, built-in)
• T1 Mapping (scripted, bundled in T1 Mapping extension)
• PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
• Dice Computation (loadable, bundled in Dice Computation extension)
• Data Probe (scripted, built-in)
• Quantitative Indices Tool (scripted, bundled in PET-Indi C extension)

ChangeQuantification

• Intensity Difference Metric (cli, bundled in Change Tracker extension)

Radiotherapy

• Beams (loadable, bundled in Slicer RT extension)
• Dvh Comparison (scripted, bundled in Slicer RT extension)
• Isodose (loadable, bundled in Slicer RT extension)
• Dose Accumulation (loadable, bundled in Slicer RT extension)
• Dicom Sro Import (loadable, bundled in Slicer RT extension)
• Planar Image (loadable, bundled in Slicer RT extension)

Registration

• BRAINSResample (cli, built-in)
• Transforms (loadable, built-in)
• BRAINSResize (cli, built-in)
• Perform Metric Test (cli, built-in)
• BRAINSFit (cli, built-in)
• PBNRR (cli, bundled in PBNRR extension)

Label Registration

• Distance Map Based Registration (scripted, bundled in Slicer Prostate extension)

Specialized

• ACPCTransform (cli, built-in)
• Fiducial Registration (cli, built-in)
• VBRAINSDemon Warp (cli, built-in)
• BRAINSDemon Warp (cli, built-in)
• Reformat (loadable, built-in)

Segmentation

• Airway Segmentation (scripted, bundled in Airway Segmentation extension)
• Editor (scripted, built-in)
• EMSegment Quick (loadable, built-in)
• Skull Stripper (cli, bundled in Skull Stripper extension)
• Simple Region Growing Segmentation (cli, built-in)
• EMSegment (loadable, built-in)
• Segment CAD (scripted, bundled in Open CAD extension)
• Airway Segmentation CLI (cli, bundled in Airway Segmentation extension)
• LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
• Sobolev Segmenter (cli, bundled in Sobolev Segmenter extension)
• Volume Clip With Model (scripted, bundled in Volume Clip extension)
• Wasp (scripted, bundled in Wasp extension)
• Swiss Skull Stripper (cli, bundled in Swiss Skull Stripper extension)
• Intensity Segmenter (cli, bundled in Intensity Segmenter extension)

Specialized

• EMSegment Command Line (cli, built-in)
• Robust Statistics Segmenter (cli, built-in)
• BRAINSROIAuto (cli, built-in)

Sequences

• Metafile Importer (loadable, bundled in Sequences extension)
• Sequence Browser (loadable, bundled in Sequences extension)
• Sequences (loadable, bundled in Sequences extension)

Shape Analysis

• Mesh To Label Map (cli, bundled in Mesh To Label Map extension)

Slicelets

• Gel Dosimetry Analysis Algo (loadable, bundled in Gel Dosimetry Analysis extension)

Surface Models

• Model To Label Map (cli, built-in)
• Probe Volume With Model (cli, built-in)
• Merge Models (cli, built-in)
• Surface Toolbox (scripted, built-in)
• Grayscale Model Maker (cli, built-in)
• Label Map Smoothing (cli, built-in)
• Model Maker (cli, built-in)

Testing

• Slicer MRBTest
• Self Tests
• CLIROITest (cli, built-in)
• CLI4Test
• Threshold Threading Test
• Scoliosis Monitoring (scripted, bundled in Scoliosis extension)
• Performance Tests

IGT Tests

• Watchdog Self Test
• Breach Warning Self Test

TestCases

• Slice Link Logic (scripted, built-in)
• Atlas Tests
• RSNAQuant Tutorial
• Volume Rendering Scene Close (scripted, built-in)
• test tractography display
• slicer Close Crash Bug2590
• Subject Hierarchy Generic Self Test
• Charting (scripted, built-in)
• Scene Performance (scripted, built-in)
• Neurosurgical Planning Tutorial Markups Self Test
• Markups In Compare Viewers Self Test
• Cardiac Agatston Measures (scripted, bundled in Cardiac Agaston Measures extension)
• fiber visibility crash2438
• scene Import2428
• RSNAVis Tutorial
• JRC2013Vis
• RSNA2012Prostate Demo
• Add Many Markups Fiducial Test
• Colors Scalar Bar Self Test
• Markups In Views Self Test
• View Controllers Slice Interpolation Bug1926
• Change Tracker Self Test
• Fiducial Layout Switch Bug1914
• Subject Hierarchy Core Plugins Self Test
• Slicer4Minute (scripted, built-in)
• Crop Volume Self Test
• label Toggle Bug2049

Unspecified

• BRAINSDWICleanup (cli, built-in)

Utilities

• Thingiverse Browser (scripted, bundled in Thingiverse Browser extension)
• BRAINSStrip Rotation (cli, built-in)
• EMSegment Transform To New Format (cli, built-in)
• Data Store (loadable, built-in)

BRAINS

• BRAINSTransform Convert (cli, built-in)

Vascular Modeling Toolkit

• Vesselness Filtering (scripted, bundled in VMTK extension)
• Centerline Computation (scripted, bundled in VMTK extension)
• Level Set Segmentation (scripted, bundled in VMTK extension)

Wizards

• Compare Volumes (scripted, bundled in CMFreg extension)
• Change Tracker (scripted, bundled in Change Tracker extension)

Work in Progress

• Longitudinal PETCT (loadable, bundled in Longitudinal PETCT extension)

Converters

• Label To DICOMSEGConverter (scripted, bundled in Reporting extension)

Informatics

• Reporting (loadable, bundled in Reporting extension)

TestCases

• Reporting Self Test
• Label To DICOMSEGConverter Self Test

XNATSlicer

• Xnat Slicer (scripted, bundled in XNATSlicer extension)

Modules by name

212 modules:

• ACPCTransform (cli, built-in)
• Add Scalar Volumes (cli, built-in)
• Airway Segmentation (scripted, bundled in Airway Segmentation extension)
• Airway Segmentation CLI (cli, bundled in Airway Segmentation extension)
• Annotations (loadable, built-in)
• Apply Matrix (cli, bundled in CMFreg extension)
• Beams (loadable, bundled in Slicer RT extension)
• Bin Shrink (cli, bundled in IASEM extension)
• Body Centric Cubic Mesh (cli, bundled in CBC 3D I2MConversion extension)
• BRAINSDemon Warp (cli, built-in)
• BRAINSDWICleanup (cli, built-in)
• BRAINSFit (cli, built-in)
• BRAINSLabel Stats (cli, built-in)
• BRAINSResample (cli, built-in)
• BRAINSResize (cli, built-in)
• BRAINSROIAuto (cli, built-in)
• BRAINSStrip Rotation (cli, built-in)
• BRAINSTransform Convert (cli, built-in)
• Breach Warning (loadable, bundled in Slicer IGT extension)
• Carrera Slice (loadable, bundled in Carrera Slice extension)
• Cast Scalar Volume (cli, built-in)
• Centerline Computation (scripted, bundled in VMTK extension)
• Change Tracker (scripted, bundled in Change Tracker extension)
• Checker Board Filter (cli, built-in)
• Cleaver CLI (cli, bundled in Cleaver Extension extension)
• CMRToolkit Automatic Left Atrial Scar (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Axial Dilate (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Boolean REMOVEFilter (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Connected Threshold Filter (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Inhomogeneity Correction (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Isolated Connected Filter (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit LASegmentation Graph Cuts (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit PVAntrum Cut (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Registration (scripted, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Registration BRAINSFit (scripted, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Wizard (scripted, bundled in Cardiac MRI Toolkit extension)
• Collect Fiducials (loadable, bundled in Slicer IGT extension)
• Colors (loadable, built-in)
• Compare Volumes (scripted, bundled in CMFreg extension)
• Corner Annotation (scripted, bundled in Corner Annotation extension)
• Create DICOMSeries (cli, built-in)
• Create Models (loadable, bundled in Slicer IGT extension)
• Crop Volume (loadable, built-in)
• Curvature Anisotropic Diffusion (cli, built-in)
• Curve Maker (scripted, bundled in Curve Maker extension)
• Data (loadable, built-in)
• Data Probe (scripted, built-in)
• Data Store (loadable, built-in)
• Dice Computation (loadable, bundled in Dice Computation extension)
• DICOM (scripted, built-in)
• DICOM2Full Brain Tractography (scripted, built-in)
• Dicom Sro Export (scripted, bundled in Slicer RT extension)
• Dicom Sro Import (loadable, bundled in Slicer RT extension)
• Diffusion Tensor Scalar Measurements (cli, built-in)
• Diffusion Weighted Volume Masking (cli, built-in)
• Distance Map Based Registration (scripted, bundled in Slicer Prostate extension)
• Dose Accumulation (loadable, bundled in Slicer RT extension)
• Downsize (cli, bundled in CMFreg extension)
• d Pet Brain Quantification (scripted, bundled in Pet Spect Analysis extension)
• DTIAtlas Fiber Analyzer (cli, bundled in DTIAtlas Fiber Analyzer extension)
• dtitractstat (cli, bundled in DTIAtlas Fiber Analyzer extension)
• Dvh Comparison (scripted, bundled in Slicer RT extension)
• DWIConvert (cli, built-in)
• DWIJoint Rician LMMSEFilter (cli, built-in)
• DWIRician LMMSEFilter (cli, built-in)
• DWITo DTIEstimation (cli, built-in)
• Editor (scripted, built-in)
• EMSegment (loadable, built-in)
• EMSegment Command Line (cli, built-in)
• EMSegment Quick (loadable, built-in)
• EMSegment Transform To New Format (cli, built-in)
• Endoscopy (scripted, built-in)
• Extract Skeleton (cli, built-in)
• Fast Grow Cut (loadable, bundled in Fast Grow Cut Effect extension)
• Fast Grow Cut Segmenter (loadable, bundled in Carrera Slice extension)
• Fiber Bundle Label Select (cli, built-in)
• Fiber Bundle To Label Map (scripted, built-in)
• Fiber Compare (cli, bundled in DTIAtlas Fiber Analyzer extension)
• Fiber Tract Measurements (cli, built-in)
• Fiducial Registration (cli, built-in)
• Fiducial Registration Wizard (loadable, bundled in Slicer IGT extension)
• Fiducials To Model Registration (scripted, bundled in Slicer IGT extension)
• Finsler Backtracing (cli, bundled in Finsler Tractography extension)
• Finsler Tractography (cli, bundled in Finsler Tractography extension)
• Gaussian Blur Image Filter (cli, built-in)
• Gel Dosimetry Analysis Algo (loadable, bundled in Gel Dosimetry Analysis extension)
• Gradient Anisotropic Diffusion (cli, built-in)
• Grayscale Fill Hole Image Filter (cli, built-in)
• Grayscale Grind Peak Image Filter (cli, built-in)
• Grayscale Model Maker (cli, built-in)
• Growing (cli, bundled in CMFreg extension)
• Gyro Guide (scripted, bundled in Gyro Guide extension)
• Heterogeneity CAD (scripted, bundled in Open CAD extension)
• Histogram Matching (cli, built-in)
• IASEMImport (cli, bundled in IASEM extension)
• IASEMImport Series (cli, bundled in IASEM extension)
• i Gyne (scripted, bundled in i Gyne extension)
• Image Label Combine (cli, built-in)
• Intensity Difference Metric (cli, bundled in Change Tracker extension)
• Intensity Segmenter (cli, bundled in Intensity Segmenter extension)
• Isodose (loadable, bundled in Slicer RT extension)
• KUtil (scripted, bundled in Carrera Slice extension)
• Label Addition (cli, bundled in CMFreg extension)
• Label Extraction (cli, bundled in CMFreg extension)
• Label Map Smoothing (cli, built-in)
• Label Object Statistics (scripted, bundled in IASEM extension)
• Label Statistics (scripted, built-in)
• Label To DICOMSEGConverter (scripted, bundled in Reporting extension)
• Landmark Registration (scripted, bundled in CMFreg extension)
• LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
• LASegmentation Workflow (scripted, bundled in Cardiac MRI Toolkit extension)
• Level Set Segmentation (scripted, bundled in VMTK extension)
• Light Weight Robot IGT (loadable, bundled in Light Weight Robot IGT extension)
• Longitudinal PETCT (loadable, bundled in Longitudinal PETCT extension)
• Markups (loadable, built-in)
• Markups To Model (loadable, bundled in Slicer IGT extension)
• Mask Creation (cli, bundled in CMFreg extension)
• Mask Scalar Volume (cli, built-in)
• Median Image Filter (cli, built-in)
• Merge Models (cli, built-in)
• Merge Stat With Fiber (cli, bundled in DTIAtlas Fiber Analyzer extension)
• Mesh Compression (cli, bundled in CBC 3D I2MConversion extension)
• Mesh To Label Map (cli, bundled in Mesh To Label Map extension)
• Metafile Importer (loadable, bundled in Sequences extension)
• Model Maker (cli, built-in)
• Model Registration (scripted, bundled in Slicer IGT extension)
• Models (loadable, built-in)
• Model To Label Map (cli, built-in)
• Multiply Scalar Volumes (cli, built-in)
• Multi Volume Explorer (loadable, built-in)
• Multi Volume Importer (scripted, built-in)
• N4ITKBias Field Correction (cli, built-in)
• Needle Finder (scripted, bundled in Needle Finder extension)
• Non Growing (cli, bundled in CMFreg extension)
• Open IGTLink IF (loadable, built-in)
• Open IGTLink Remote (loadable, bundled in Slicer IGT extension)
• Orient Scalar Volume (cli, built-in)
• Path Explorer (loadable, bundled in Slicer IGT extension)
• PBNRR (cli, bundled in PBNRR extension)
• Perform Metric Test (cli, built-in)
• Perk Evaluator (loadable, bundled in Perk Tutor extension)
• PETIndi C (scripted, bundled in PET-Indi C extension)
• PETStandard Uptake Value Computation (cli, built-in)
• PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
• PETTumor Segmentation (loadable, bundled in PETTumor Segmentation extension)
• Pivot Calibration (loadable, bundled in Slicer IGT extension)
• Pk Modeling (cli, bundled in Pk Modeling extension)
• Planar Image (loadable, bundled in Slicer RT extension)
• plastimatch slicer bspline (cli, bundled in Slicer RT extension)
• plastimatch slicer landwarp (cli, bundled in Slicer RT extension)
• Plastimatch Py (loadable, bundled in Slicer RT extension)
• Plm Register (scripted, bundled in Slicer RT extension)
• Plus Remote (scripted, bundled in Slicer IGT extension)
• Probe Volume With Model (cli, built-in)
• Python Metrics Calculator (scripted, bundled in Perk Tutor extension)
• Quad Edge Surface Mesher (cli, bundled in Slicer Prostate extension)
• Quantitative Indices CLI (cli, bundled in PET-Indi C extension)
• Quantitative Indices Tool (scripted, bundled in PET-Indi C extension)
• Reformat (loadable, built-in)
• Reporting (loadable, bundled in Reporting extension)
• Resample DTIVolume (cli, built-in)
• Resample Scalar Vector DWIVolume (cli, built-in)
• Robust Statistics Segmenter (cli, built-in)
• Sample Data (scripted, built-in)
• Scar Visualization (scripted, bundled in Cardiac MRI Toolkit extension)
• Scene Views (loadable, built-in)
• Segmentation Smoothing (cli, bundled in Slicer Prostate extension)
• Segment CAD (scripted, bundled in Open CAD extension)
• Sequence Browser (loadable, bundled in Sequences extension)
• Sequences (loadable, bundled in Sequences extension)
• Simple Filters (scripted, built-in)
• Simple Region Growing Segmentation (cli, built-in)
• Skull Stripper (cli, bundled in Skull Stripper extension)
• Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)
• Sobolev Segmenter (cli, bundled in Sobolev Segmenter extension)
• Spacing Aware Curvature Diffusion (cli, bundled in IASEM extension)
• Spinal Curvature Measurement (scripted, bundled in Scoliosis extension)
• Subject Hierarchy (loadable, built-in)
• Subtract Scalar Volumes (cli, built-in)
• Surface Registration (scripted, bundled in CMFreg extension)
• Surface Toolbox (scripted, built-in)
• SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
• Swiss Skull Stripper (cli, bundled in Swiss Skull Stripper extension)
• T1 Mapping (scripted, bundled in T1 Mapping extension)
• TCIABrowser (scripted, bundled in TCIABrowser extension)
• Thingiverse Browser (scripted, bundled in Thingiverse Browser extension)
• Threshold Scalar Volume (cli, built-in)
• Tracker Stabilizer (loadable, bundled in Tracker Stabilizer extension)
• Tractography Display (loadable, built-in)
• Tractography Interactive Seeding (loadable, built-in)
• Tractography Label Map Seeding (cli, built-in)
• Transform Fusion (loadable, bundled in Slicer IGT extension)
• Transform Recorder (loadable, bundled in Perk Tutor extension)
• Transforms (loadable, built-in)
• Ultrasound Snapshots (loadable, bundled in Slicer IGT extension)
• Units (loadable, built-in)
• VBRAINSDemon Warp (cli, built-in)
• Vector To Scalar Volume (scripted, built-in)
• Vesselness Filtering (scripted, bundled in VMTK extension)
• Vff File Reader (loadable, bundled in Slicer RT extension)
• View Controllers (loadable, built-in)
• Volume Clip With Model (scripted, bundled in Volume Clip extension)
• Volume Rendering (loadable, built-in)
• Volume Reslice Driver (loadable, bundled in Slicer IGT extension)
• Volumes (loadable, built-in)
• Voting Binary Hole Filling Image Filter (cli, built-in)
• Wasp (scripted, bundled in Wasp extension)
• Watchdog (loadable, bundled in Slicer IGT extension)
• Welcome (loadable, built-in)
• Window Level Effect (scripted, bundled in Window Level Effect extension)
• Workflow Segmentation (loadable, bundled in Perk Tutor extension)
• Xnat Slicer (scripted, bundled in XNATSlicer extension)