Documentation/Nightly/ModuleExtensionListing/Modules by contributing organization

• Modules by contributing organization

Modules by contributing organization

76 contributing organizations:

• Asclepios INRIA
• AZE R&D
• Boston Children's Hospital
• Brigham and Women's Hospital
• BWH
• BWH, SPL
• BWH, SUMS
• CARMA
• College of Information Engineering, Zhejiang University of Technology, Hangzhou, China); Xiaolei Chen, Jiashu Zhang(Department of Neurosurgery, PLA General Hospital, Beijing, China
• CRTC
• gatech
• GE
• Georgia Institute of Technology
• Georgia Tech
• IBM
• Isomics
• Isomics Inc.
• Isomics, Inc.
• Isomics, pieper@isomics.com
• Kingston General Hospital
• Kitware
• Kitware)
• MGH
• Moka Creative, LLC, kumar.sunil.p@gmail.com
• MRC Harwell, Oxfordshire
• MSC/NLM
• Noware
• Orobix
• Perk Lab at Queen's University
• Perk Lab, Queen's
• Perk Lab, Queen's Universit
• Perk Lab, Queen's University
• PMH
• PMH, Toronto
• Princess Margaret Cancer Centre
• Queen's
• Queen's Universit
• Queen's University
• Queen's University) Jaime Garcia-Guevara (Queen's University
• Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto
• RMP, PMH
• SAIC-Frederick, NCI-Frederick
• SBU
• SCI Institute
• Shiga University of Medical Science
• Shiga University of Medical Science in Japan
• SINAPSE
• SNR
• SPL
• SPL B&W Harvard
• SPL, BWH
• SPL, BWH, UPenn
• SPL/BWH
• Stony Brook University
• SUMS
• Surgical Planning Lab
• UAB
• UHN, Toronto
• Uiowa
• UIowa
• UNC
• Univ of Michigan
• Univ. of Iowa
• University 'Magna Graecia' of Catanzaro
• University College Cork
• University of Alabama Birmingham
• University of Heidelberg
• University of Iowa
• University of Iowa) and Andrey Fedorov (SPL
• UPenn
• Utah
• UVa
• UWA
• Wash U-St. Louis, dmarcus@wustl.edu
• while at GE

Asclepios INRIA

• PBNRR (cli, bundled in PBNRR extension)

AZE R&D

• JRC2013Vis

Boston Children's Hospital

• Centerline Computation (scripted, bundled in VMTK extension)
• Level Set Segmentation (scripted, bundled in VMTK extension)
• Vesselness Filtering (scripted, bundled in VMTK extension)

Brigham and Women's Hospital

• Corner Annotation (scripted, bundled in Corner Annotation extension)
• Surface Toolbox (scripted, built-in)
• test tractography display
• Volume Reslice Driver (loadable, bundled in Slicer IGT extension)

BWH

• Add Many Markups Fiducial Test
• Change Tracker Self Test
• Colors Scalar Bar Self Test
• Crop Volume Self Test
• Curve Maker (scripted, bundled in Curve Maker extension)
• Dice Computation (loadable, bundled in Dice Computation extension)
• DICOMRWVMPlugin
• Distance Map Based Registration (scripted, bundled in Slicer Prostate extension)
• Fast Grow Cut Effect (scripted, bundled in Fast Grow Cut Effect extension)
• Fiducial Layout Switch Bug1914
• Heterogeneity CAD (scripted, bundled in Open CAD extension)
• Markups (loadable, built-in)
• Markups In Compare Viewers Self Test
• Markups In Views Self Test
• Neurosurgical Planning Tutorial Markups Self Test
• Segmentation Smoothing (cli, bundled in Slicer Prostate extension)
• Segment CAD (scripted, bundled in Open CAD extension)
• T1 Mapping (scripted, bundled in T1 Mapping extension)
• Tracker Stabilizer (loadable, bundled in Tracker Stabilizer extension)
• Volume Rendering Scene Close (scripted, built-in)
• Window Level Effect (scripted, bundled in Window Level Effect extension)

BWH, SPL

• Crop Volume (loadable, built-in)

BWH, SUMS

• Corner Annotation (scripted, bundled in Corner Annotation extension)

CARMA

• CMRToolkit Automatic Left Atrial Scar (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Axial Dilate (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Boolean REMOVEFilter (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Connected Threshold Filter (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Inhomogeneity Correction (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Isolated Connected Filter (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit PVAntrum Cut (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Registration (scripted, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Registration BRAINSFit (scripted, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Wizard (scripted, bundled in Cardiac MRI Toolkit extension)
• LASegmentation Workflow (scripted, bundled in Cardiac MRI Toolkit extension)
• Scar Visualization (scripted, bundled in Cardiac MRI Toolkit extension)

College of Information Engineering, Zhejiang University of Technology, Hangzhou, China); Xiaolei Chen, Jiashu Zhang(Department of Neurosurgery, PLA General Hospital, Beijing, China

• Gyro Guide (scripted, bundled in Gyro Guide extension)

CRTC

• Body Centric Cubic Mesh (cli, bundled in CBC 3D I2MConversion extension)
• Mesh Compression (cli, bundled in CBC 3D I2MConversion extension)
• PBNRR (cli, bundled in PBNRR extension)

gatech

• Robust Statistics Segmenter (cli, built-in)

GE

• Add Scalar Volumes (cli, built-in)
• Charting (scripted, built-in)
• Checker Board Filter (cli, built-in)
• Create DICOMSeries (cli, built-in)
• Curvature Anisotropic Diffusion (cli, built-in)
• Diffusion Tensor Test (cli, built-in)
• DWIConvert (cli, built-in)
• Execution Model Tour (cli, built-in)
• Gradient Anisotropic Diffusion (cli, built-in)
• Grayscale Fill Hole Image Filter (cli, built-in)
• Grayscale Grind Peak Image Filter (cli, built-in)
• Grayscale Model Maker (cli, built-in)
• Histogram Matching (cli, built-in)
• Label Map Smoothing (cli, built-in)
• Median Image Filter (cli, built-in)
• Model Maker (cli, built-in)
• Model To Label Map (cli, built-in)
• Multiply Scalar Volumes (cli, built-in)
• Orient Scalar Volume (cli, built-in)
• Otsu Threshold Image Filter (cli, built-in)
• Pk Modeling (cli, bundled in Pk Modeling extension)
• Resample Scalar Volume (cli, built-in)
• Simple Region Growing Segmentation (cli, built-in)
• Skull Stripper (cli, bundled in Skull Stripper extension)
• Slice Link Logic (scripted, built-in)
• Slicer4Minute (scripted, built-in)
• Spacing Aware Curvature Diffusion (cli, bundled in IASEM extension)
• Subtract Scalar Volumes (cli, built-in)
• View Controllers (loadable, built-in)
• View Controllers Slice Interpolation Bug1926
• Voting Binary Hole Filling Image Filter (cli, built-in)

Georgia Institute of Technology

• Carrera Slice Effect (scripted, bundled in Carrera Slice extension)

Georgia Tech

• Carrera Slice (loadable, bundled in Carrera Slice extension)

IBM

• Annotations (loadable, built-in)

Isomics

• Atlas Tests
• Binary Watershed Effect (scripted, bundled in IASEM extension)
• Centerline Computation (scripted, bundled in VMTK extension)
• Compare Volumes (scripted, bundled in CMFreg extension)
• Data (loadable, built-in)
• Data Probe (scripted, built-in)
• DICOM (scripted, built-in)
• Editor (scripted, built-in)
• Endoscopy (scripted, built-in)
• fiber visibility crash2438
• Fiber Bundle To Label Map (scripted, built-in)
• Label Statistics (scripted, built-in)
• label Toggle Bug2049
• Landmark Registration (scripted, bundled in CMFreg extension)
• Level Set Segmentation (scripted, bundled in VMTK extension)
• Models (loadable, built-in)
• Performance Tests
• PETTumor Segmentation Effect (scripted, bundled in PETTumor Segmentation extension)
• Reporting (loadable, bundled in Reporting extension)
• RSNA2012Prostate Demo
• RSNAQuant Tutorial
• RSNAVis Tutorial
• Sample Data (scripted, built-in)
• scene Import2428
• Self Tests
• Simple Filters (scripted, built-in)
• slicer Close Crash Bug2590
• Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)
• Tractography Interactive Seeding (loadable, built-in)
• Transforms (loadable, built-in)
• Vector To Scalar Volume (scripted, built-in)
• Vesselness Filtering (scripted, bundled in VMTK extension)
• View Controllers (loadable, built-in)
• Volume Rendering (loadable, built-in)
• Volumes (loadable, built-in)

Isomics Inc.

• DICOMDiffusion Volume Plugin
• DICOMLongitudinal PETCTPlugin
• DICOMScalar Volume Plugin
• DICOMSlicer Data Bundle Plugin
• Slicer MRBTest
• Threshold Threading Test

Isomics, Inc.

• Carrera Slice Effect (scripted, bundled in Carrera Slice extension)

Isomics, pieper@isomics.com

• Xnat Slicer (scripted, bundled in XNATSlicer extension)

Kingston General Hospital

• Gel Dosimetry Analysis (scripted, bundled in Gel Dosimetry Analysis extension)

Kitware

• Cameras (loadable, built-in)
• Colors (loadable, built-in)
• Data (loadable, built-in)
• Data Store (loadable, built-in)
• Double Arrays (loadable, built-in)
• DTINot Reproducible Issue3977
• Event Broker
• Expert Automated Registration (cli, built-in)
• Extension Wizard (scripted, built-in)
• Extract Skeleton (cli, built-in)
• Fast Grow Cut (loadable, bundled in Fast Grow Cut Effect extension)
• Fast Grow Cut Segmenter (loadable, bundled in Carrera Slice extension)
• fiber visibility crash2438
• Fiducial Registration (cli, built-in)
• Gaussian Blur Image Filter (cli, built-in)
• Image Maker (cli, bundled in Image Maker extension)
• label Toggle Bug2049
• Matlab Commander (cli, bundled in Matlab Bridge extension)
• Matlab Module Generator (loadable, bundled in Matlab Bridge extension)
• Models (loadable, built-in)
• Multi Volume Explorer (loadable, built-in)
• Multi Volume Importer (scripted, built-in)
• Reformat (loadable, built-in)
• Sample Data (scripted, built-in)
• Scene Performance (scripted, built-in)
• Simple Filters (scripted, built-in)
• Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)
• Threshold Scalar Volume (cli, built-in)
• Tractography Display (loadable, built-in)
• Transforms (loadable, built-in)
• Units (loadable, built-in)
• View Controllers (loadable, built-in)
• Volume Rendering (loadable, built-in)
• Volumes (loadable, built-in)
• Welcome (loadable, built-in)

Kitware)

• Finsler Backtracing (cli, bundled in Finsler Tractography extension)
• Finsler Tractography (cli, bundled in Finsler Tractography extension)

MGH

• Dicom Sro Export (scripted, bundled in Slicer RT extension)
• Pk Modeling (cli, bundled in Pk Modeling extension)
• Plm Register (scripted, bundled in Slicer RT extension)
• T1 Mapping (scripted, bundled in T1 Mapping extension)

Moka Creative, LLC, kumar.sunil.p@gmail.com

• Xnat Slicer (scripted, bundled in XNATSlicer extension)

MRC Harwell, Oxfordshire

• Wasp (scripted, bundled in Wasp extension)

MSC/NLM

• Label Object Statistics (scripted, bundled in IASEM extension)
• Simple Filters (scripted, built-in)

Noware

• Swiss Skull Stripper (cli, bundled in Swiss Skull Stripper extension)

Orobix

• Centerline Computation (scripted, bundled in VMTK extension)
• Level Set Segmentation (scripted, bundled in VMTK extension)
• Surface Toolbox (scripted, built-in)
• Vesselness Filtering (scripted, bundled in VMTK extension)

PerkLab at Queen's University

• Py Dev Remote Debug (scripted, bundled in Py Dev Remote Debug extension)

PerkLab, Queen's

• Metafile Importer (loadable, bundled in Sequences extension)
• Sequence Browser (loadable, bundled in Sequences extension)
• Sequences (loadable, bundled in Sequences extension)
• Transforms (loadable, built-in)

PerkLab, Queen's Universit

• Model Registration (scripted, bundled in Slicer IGT extension)

PerkLab, Queen's University

• Matlab Commander (cli, bundled in Matlab Bridge extension)
• Matlab Module Generator (loadable, bundled in Matlab Bridge extension)
• Plus Remote (scripted, bundled in Slicer IGT extension)
• Volume Clip With Model (scripted, bundled in Volume Clip extension)

PMH

• Colors Scalar Bar Self Test
• Sequence Browser (loadable, bundled in Sequences extension)
• Sequences (loadable, bundled in Sequences extension)

PMH, Toronto

• Isodose (loadable, bundled in Slicer RT extension)

Princess Margaret Cancer Centre

• Dicom Sro Export (scripted, bundled in Slicer RT extension)
• Dicom Sro Import (loadable, bundled in Slicer RT extension)

Queen's

• Batch Contour Conversion (scripted, bundled in Slicer RT extension)
• Beams (loadable, bundled in Slicer RT extension)
• Contour Comparison (loadable, bundled in Slicer RT extension)
• Contour Morphology (loadable, bundled in Slicer RT extension)
• Contours (loadable, bundled in Slicer RT extension)
• Data (loadable, built-in)
• Dicom Rt Import Export (loadable, bundled in Slicer RT extension)
• Dicom Rt Import Self Test
• DICOMScalar Volume Plugin
• Dose Accumulation (loadable, bundled in Slicer RT extension)
• Dose Comparison (loadable, bundled in Slicer RT extension)
• Dose Volume Histogram (loadable, bundled in Slicer RT extension)
• Gel Dosimetry Analysis Algo (loadable, bundled in Gel Dosimetry Analysis extension)
• Isodose (loadable, bundled in Slicer RT extension)
• NAMIC Tutorial 2013June Self Test
• Planar Image (loadable, bundled in Slicer RT extension)
• Subject Hierarchy (loadable, built-in)
• Subject Hierarchy Core Plugins Self Test
• Subject Hierarchy Generic Self Test
• Vff File Reader (loadable, bundled in Slicer RT extension)

Queen's Universit

• Fiducials To Model Registration (scripted, bundled in Slicer IGT extension)

Queen's University

• Breach Warning (loadable, bundled in Slicer IGT extension)
• Collect Fiducials (loadable, bundled in Slicer IGT extension)
• Create Models (loadable, bundled in Slicer IGT extension)
• Distance Map Based Registration (scripted, bundled in Slicer Prostate extension)
• Dvh Comparison (scripted, bundled in Slicer RT extension)
• Fiducial Registration Wizard (loadable, bundled in Slicer IGT extension)
• Gel Dosimetry Analysis (scripted, bundled in Gel Dosimetry Analysis extension)
• Markups To Model (loadable, bundled in Slicer IGT extension)
• Open IGTLink Remote (loadable, bundled in Slicer IGT extension)
• Perk Evaluator (loadable, bundled in Perk Tutor extension)
• Pivot Calibration (loadable, bundled in Slicer IGT extension)
• Python Metrics Calculator (scripted, bundled in Perk Tutor extension)
• Resection Volume (scripted, bundled in Resection Planner extension)
• Scoliosis Monitoring (scripted, bundled in Scoliosis extension)
• Spinal Curvature Measurement (scripted, bundled in Scoliosis extension)
• Tracker Stabilizer (loadable, bundled in Tracker Stabilizer extension)
• Transform Fusion (loadable, bundled in Slicer IGT extension)
• Transform Recorder (loadable, bundled in Perk Tutor extension)
• Ultrasound Snapshots (loadable, bundled in Slicer IGT extension)
• Volume Clip With Roi (scripted, bundled in Volume Clip extension)
• Volume Reslice Driver (loadable, bundled in Slicer IGT extension)
• Watchdog (loadable, bundled in Slicer IGT extension)
• Workflow Segmentation (loadable, bundled in Perk Tutor extension)

Queen's University) Jaime Garcia-Guevara (Queen's University

• Breach Warning Self Test
• Watchdog Self Test

Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto

• Matlab Commander (cli, bundled in Matlab Bridge extension)
• Matlab Module Generator (loadable, bundled in Matlab Bridge extension)

RMP, PMH

• Dicom Sro Import Plugin

SAIC-Frederick, NCI-Frederick

• Volume Rendering (loadable, built-in)

SBU

• LAScar Segmenter (cli, bundled in LAScar Segmenter extension)

SCI Institute

• Cleaver CLI (cli, bundled in Cleaver Extension extension)

Shiga University of Medical Science

• Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)

Shiga University of Medical Science in Japan

• Corner Annotation (scripted, bundled in Corner Annotation extension)

SINAPSE

• Cardiac Agatston Measures (scripted, bundled in Cardiac Agaston Measures extension)

SNR

• Path Explorer (loadable, bundled in Slicer IGT extension)

SPL

• DICOM2Full Brain Tractography (scripted, built-in)
• Label To DICOMSEGConverter Self Test
• Pk Modeling (cli, bundled in Pk Modeling extension)
• Quantitative Indices CLI (cli, bundled in PET-Indi C extension)
• Quantitative Indices Tool (scripted, bundled in PET-Indi C extension)
• Reporting Self Test
• SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)

SPL B&W Harvard

• PBNRR (cli, bundled in PBNRR extension)

SPL, BWH

• ACPCTransform (cli, built-in)
• Annotations (loadable, built-in)
• BSpline To Deformation Field (cli, built-in)
• Cast Scalar Volume (cli, built-in)
• Colors (loadable, built-in)
• Data (loadable, built-in)
• Diffusion Tensor Scalar Measurements (cli, built-in)
• Diffusion Weighted Volume Masking (cli, built-in)
• DTIexport (cli, built-in)
• DTIimport (cli, built-in)
• DTINot Reproducible Issue3977
• DWITo DTIEstimation (cli, built-in)
• Fiber Tract Measurements (cli, built-in)
• Fiducial Registration (cli, built-in)
• Grayscale Model Maker (cli, built-in)
• Image Label Combine (cli, built-in)
• Mask Scalar Volume (cli, built-in)
• Merge Models (cli, built-in)
• Model Maker (cli, built-in)
• Models (loadable, built-in)
• Model To Label Map (cli, built-in)
• Multi Volume Explorer (loadable, built-in)
• Multi Volume Importer (scripted, built-in)
• N4ITKBias Field Correction (cli, built-in)
• PETStandard Uptake Value Computation (cli, built-in)
• PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
• Probe Volume With Model (cli, built-in)
• Reporting (loadable, bundled in Reporting extension)
• Robust Statistics Segmenter (cli, built-in)
• Scene Views (loadable, built-in)
• SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
• TCIABrowser (scripted, bundled in TCIABrowser extension)
• Test Grid Transform Registration (cli, built-in)
• Threshold Scalar Volume (cli, built-in)
• Tractography Label Map Seeding (cli, built-in)
• View Controllers (loadable, built-in)
• Volume Rendering (loadable, built-in)
• Volumes (loadable, built-in)
• Welcome (loadable, built-in)

SPL, BWH, UPenn

• Merge Models (cli, built-in)

SPL/BWH

• DWModeling (cli, bundled in Slicer Prostate extension)
• Quad Edge Surface Mesher (cli, bundled in Slicer Prostate extension)

Stony Brook University

• Carrera Slice Effect (scripted, bundled in Carrera Slice extension)
• Fast Grow Cut Effect (scripted, bundled in Fast Grow Cut Effect extension)

SUMS

• Corner Annotation (scripted, bundled in Corner Annotation extension)

Surgical Planning Lab

• Label To DICOMSEGConverter (scripted, bundled in Reporting extension)

UAB

• LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
• Sobolev Segmenter (cli, bundled in Sobolev Segmenter extension)

UHN, Toronto

• Contour Comparison (loadable, bundled in Slicer RT extension)
• Contour Morphology (loadable, bundled in Slicer RT extension)
• Contours (loadable, bundled in Slicer RT extension)
• Dicom Rt Import Export (loadable, bundled in Slicer RT extension)
• Dose Accumulation (loadable, bundled in Slicer RT extension)
• Dose Comparison (loadable, bundled in Slicer RT extension)
• Dose Volume Histogram (loadable, bundled in Slicer RT extension)

Uiowa

• DWIConvert (cli, built-in)

UIowa

• DWIConvert (cli, built-in)

UNC

• Developer Tools For Extensions (scripted, bundled in Developer Tools For Extensions extension)
• DWIRician LMMSEFilter (cli, built-in)
• Extract Skeleton (cli, built-in)
• Intensity Segmenter (cli, bundled in Intensity Segmenter extension)
• Resample DTIVolume (cli, built-in)
• Resample Scalar Vector DWIVolume (cli, built-in)

Univ of Michigan

• Surface Registration (scripted, bundled in CMFreg extension)

Univ. of Iowa

• DICOMPETSUVPlugin
• DICOMRWVMPlugin
• PETIndi C (scripted, bundled in PET-Indi C extension)

University 'Magna Graecia' of Catanzaro

• Plastimatch Py (loadable, bundled in Slicer RT extension)

University College Cork

• Airway Segmentation (scripted, bundled in Airway Segmentation extension)
• Airway Segmentation CLI (cli, bundled in Airway Segmentation extension)

University of Alabama Birmingham

• Carrera Slice Effect (scripted, bundled in Carrera Slice extension)
• Fast Grow Cut Effect (scripted, bundled in Fast Grow Cut Effect extension)

University of Heidelberg

• Longitudinal PETCT (loadable, bundled in Longitudinal PETCT extension)

University of Iowa

• PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
• PETTumor Segmentation (loadable, bundled in PETTumor Segmentation extension)
• PETTumor Segmentation Effect (scripted, bundled in PETTumor Segmentation extension)
• Quantitative Indices CLI (cli, bundled in PET-Indi C extension)
• Quantitative Indices Tool (scripted, bundled in PET-Indi C extension)
• SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)

University of Iowa) and Andrey Fedorov (SPL

• Longitudinal PETCT (loadable, bundled in Longitudinal PETCT extension)

UPenn

• Annotations (loadable, built-in)
• EMSegment (loadable, built-in)
• N4ITKBias Field Correction (cli, built-in)
• Scene Views (loadable, built-in)

Utah

• Label Map Smoothing (cli, built-in)
• LAScar Segmenter (cli, bundled in LAScar Segmenter extension)

UVa

• DWIJoint Rician LMMSEFilter (cli, built-in)
• DWIRician LMMSEFilter (cli, built-in)
• DWIUnbiased Non Local Means Filter (cli, built-in)

UWA

• Thingiverse Browser (scripted, bundled in Thingiverse Browser extension)

WashU-St. Louis, dmarcus@wustl.edu

• Xnat Slicer (scripted, bundled in XNATSlicer extension)

while at GE

• Pk Modeling (cli, bundled in Pk Modeling extension)