Documentation/4.3
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Modules by Category
Core Modules
- Annotations (Nicole Aucoin)
- Colors (Nicole Aucoin)
- Data (Julien Finet)
- DICOM (Steve Pieper)
- Editor (Steve Pieper)
- WatershedFromMarkers (Bradley Lowekamp)
- WatershedFromMarkers (Bradley Lowekamp)
- Markups (Nicole Aucoin)
- Models (Nicole Aucoin)
- SceneViews (Nicole Aucoin)
- Transforms (Alex Yarmarkovich)
- View Controllers (Jim Miller)
- Volumes (Steve Pieper)
- Volume Rendering (Julien Finet)
- Welcome to Slicer (Wendy Plesniak)
Wizards
Informatics
- Sample Data (Steve Pieper)
Registration
- Introduction to Registration (Dominik Meier)
- General Brainsfit Registration (Hans Johnson)
- Resample Image (BRAINS) (Hans Johnson)
- Specialized
- ACPC Transform (Nicole Aucoin)
- Demon Registration (BRAINS) (Hans Johnson)
- Fiducial Registration (Stephen Aylward)
- Vector Demon Registration (Hans Johnson)
- Reformat (Michael Jeulin-Lagarrigue)
- Segmentation Aided Registration (Yi Gao)
Segmentation
- EMSegment Easy (no atlas) (Kilian Pohl)
- EMSegment (with atlas) (Kilian Pohl)
- Simple Region Growing Segmentation (Jim Miller, Harini Veeraraghavan)
- KSlice Interactive Segmenter (Ivan Kolesov, Peter Karasev, Patricio Vela, Allen Tannenbaum, Karl Fritscher, Steve Pieper )
- Editor (Steve Pieper)
- Specialized
- EMSegment Command-line (Kilian Pohl)
- Foreground Masking (BRAINS) (Hans Johnson)
- Robust Statistics Segmenter (Yi Gao)
- Left Atrial Scar Segmenter (Liangjia Zhu)
- Left Atrium Segmenter (Liangjia Zhu)
- Fast GrowCut Effect (Liangjia Zhu)
Quantification
- Data Probe (Steve Pieper)
- Label Statistics (Steve Pieper)
- PET Standard Uptake Value Computation (Nicole Aucoin)
- Change quantification
- Intensity Difference Metric (Andrey Fedorov)
Diffusion
- DWI to Full Brain Tractography (Demian Wasserman)
- Denoising
- DWI Joint Rician LMMSE Image Filter (Demian Wasserman)
- DWI Rician LMMSE Filter (Demian Wasserman)
- DWI Joint Rician LMMSE Image Filter (Demian Wasserman)
- Tractography
- Tractography Display (Demian Wasserman)
- Tractography Interactive Seeding (Alex Yarmarkovich)
- Tractography Label Map Seeding (Demian Wasserman)
- UKF Tractography
- Tractography Display (Demian Wasserman)
- Utilities
- DWI To DTI Estimation (Demian Wasserman)
- Diffusion Tensor Scalar Measurements (Demian Wasserman)
- Diffusion Weighted Volume Masking (Demian Wasserman)
- FiberBundleLabelSelect (Alex Yarmarkovich)
- Resample DTI Volume (Demian Wasserman)
- DWI To DTI Estimation (Demian Wasserman)
- Data Conversion
- DTIImport
(Sonia Pujol)
- DTIExport
(Sonia Pujol)
- Fiber Bundle to Label Map (Steve Pieper)
- DTIImport
IGT
- OpenIGTLink IF (Junichi Tokuda)
Filtering
- N4ITK Bias Field Correction (Andrey Fedorov)
- CheckerBoard Filter (Jim Miller)
- Extract Skeleton (Jim Miller)
- Histogram Matching (Jim Miller)
- Image Label Combine (Alex Yarmarkovich)
- Resample Scalar/Vector/DWI Volume (Francois Budin)
- Threshold Scalar Volume (Nicole Aucoin)
- Voting Binary Hole Filling Image Filter (Jim Miller)
- Simple Filters (Bradley Lowekamp)
- Arithmetic
- Add Scalar Volumes (Jim Miller)
- Cast Scalar Volume (Nicole Aucoin)
- Mask Scalar Volume (Nicole Aucoin)
- Multiply Scalar Volumes (Jim Miller)
- Subtract Scalar Volumes (Jim Miller)
- Add Scalar Volumes (Jim Miller)
- Denoising
- Gradient Anisotropic Diffusion (Jim Miller)
- Curvature Anisotropic Diffusion (Jim Miller)
- Gaussian Blur Image Filter (Stephen Aylward)
- Median Image Filter (Jim Miller)
- Gradient Anisotropic Diffusion (Jim Miller)
- Morphology
- Grayscale Fill Hole Image Filter (Jim Miller)
- Grayscale Grind Peak Image Filter (Jim Miller)
Surface Models
- Grayscale Model Maker (Jim Miller)
- Label Map Smoothing
- Merge Models (Nicole Aucoin)
- Model Maker (Nicole Aucoin)
- Model To LabelMap (Nicole Aucoin)
- Probe Volume With Model (Lauren O'Donnell)
- SurfaceToolbox (Luca Antiga)
Converters
- Create DICOM Series (Jim Miller)
- Crop Volume (Andrey Fedorov)
- Dicom to Nrrd Converter (Jim Miller)
- Orient Scalar Volume (Jim Miller)
- Vector to Scalar Volume (Steve Pieper)
Endoscopy
- Endoscopy (Steve Pieper)
Work in Progress ![UnderConstruction.png](/w/img_auth.php/thumb/4/44/UnderConstruction.png/10px-UnderConstruction.png)
- MultiVolume Support
- MultiVolume Importer (Andrey Fedorov)
- MultiVolume Explorer (Andrey Fedorov)
- Data Store (Charles Marion)
Developer Tools
- Cameras (Julien Finet)
- Event Broker (Julien Finet)
- Execution Model Tour (JC Fillion-Robin)
- Module Template (JC Fillion-Robin)
- Performance Tests
- Tractography
Legacy
- Converters
- Diffusion
- Denoising
- Filtering
- MRI Bias Field Correction (Sylvain Jaume)
- Otsu Threshold Image Filter (Bill Lorensen)
- Resample Scalar Volume (Jim Miller)
- MRI Bias Field Correction (Sylvain Jaume)
- Registration
- Rigid Registration (Jim Miller)
- Affine Registration (Daniel Blezek)
- BSpline Deformable Registration
- Expert Automated Registration
- Linear Registration
- MultiResolution Affine Registration (Casey Goodlett)
- Rigid Registration (Jim Miller)
- Segmentation
- Otsu Threshold Segmentation (Bill Lorensen)
- Otsu Threshold Segmentation (Bill Lorensen)
Extensions by Category
Cat 1
Cat 2
- SkullStripper (Xiaodong Tao)
- SwissSkullStripper (Bill Lorensen)
- Cardiac MRI Toolkit (Alan Morris, Salma Bengali)
- PkModeling (Emma Zhu, Jim Miller)
- FacetedVisualizer (Harini Veeraraghavan, Jim Miller)
- Reporting (Andrey Fedorov, Nicole Aucoin, Steve Pieper) (work in progress)
- SlicerRT (Csaba Pinter, Andras Lasso, Kevin Wang, Greg Sharp, Steve Pieper)
- SlicerIGT (Tamas Ungi, Junichi Tokuda)
- Matlab Bridge (Andras Lasso, Jean-Christophe Fillion-Robin, Kevin Wang)
- iGyne (Xiaojun Chen and iGyne Team)
- LongitudinalPETCT (Paul Mercea, Andrey Fedorov)
- DTIProcess (Francois Budin)
- DTIAtlasFiberAnalyzer (Francois Budin)
- FiberViewerLight (Francois Budin)
- DTIPrep (Francois Budin)
- DTIAtlasBuilder (Adrien Kaiser)
- ShapePopulationViewer (Alexis Girault)
- ModelToModelDistance (Francois Budin, Juliette Pera, Beatriz Paniagua)
- TubeTK (Stephen Aylward, Jean-Christophe Fillion-Robin, Christopher Mullins, Michael Jeulin-L, Matthew McCormick)
- UKFTractography (Ryan Eckbo, Yogesh Rathi)
- TrackerStabilizer (Laurent Chauvin, Jayender Jagadeesan)
- ChangeTracker (Andrey Fedorov)
- SobolevSegmenter (Arie Nakhmani)
- QuickTools (Julien Finet)
- XNATSlicer
- ErodeDilateLabel (Junichi)
- ThingiverseBrowser (Nigel Goh)
- Virtual Fracture Reconstruction (Karl Fritscher, Peter Karasev)
- AirwaySegmentation (Pietro Nardelli)
- ModelClip (Xiaojun Chen,Jun Lin,Qiqin Zhan)
- SurfaceMirror (Xiaojun Chen,Jiaxi Luo, Ruqing Ye)
- Scoliosis (Franklin King, Tamas Ungi)
- Spinal Curvature Measurement (Franklin King, Tamas Ungi)
- Port Placement (Andinet Enquobahrie, Luis G. Torres)
- Plus Remote (Franklin King, Tamas Ungi)
- Transform Visualizer (Franklin King, Andras Lasso, Csaba Pinter)
- WindowLevelEffect (Andrey Fedorov, Steve Pieper)
- PerkTutor (Tamas Ungi, Matthew Holden)
- SlicerToKiwiExporter (Jean-Christophe Fillion-Robin)
- GelDosimetry (Csaba Pinter)
- MRI SNR Measurement (Babak Matinfar)
- CurveMaker (Junichi Tokuda)
- OpenCAD (Vivek Narayan, Jayender Jagadeesan)
- CornerAnnotation (Atsushi Yamada)
Cat 3
- LesionSegmentation (Mark Scully)
- LesionSegmentation->TrainModel (Mark Scully)
- LesionSegmentation->PredictLesions (Mark Scully)
- IASEM (Bradley Lowekamp)