Difference between revisions of "Documentation/Nightly/ModuleExtensionListing"
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=== Editor Extensions === | === Editor Extensions === | ||
* [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut FastGrowCutEffect] <small>(scripted, bundled in [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut FastGrowCutEffect] extension)</small> | * [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut FastGrowCutEffect] <small>(scripted, bundled in [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut FastGrowCutEffect] extension)</small> | ||
| − | * [ | + | * [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|CarreraSliceEffect]] <small>(scripted, bundled in [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|CarreraSlice]] extension)</small> |
* [[Documentation/Nightly/Extensions/SlicerPathology|QuickTCGAEffect]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerPathology|SlicerPathology]] extension)</small> | * [[Documentation/Nightly/Extensions/SlicerPathology|QuickTCGAEffect]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerPathology|SlicerPathology]] extension)</small> | ||
* [[Documentation/Nightly/Modules/PETTumorSegmentationEffect|PETTumorSegmentationEffect]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PETTumorSegmentation|PETTumorSegmentation]] extension)</small> | * [[Documentation/Nightly/Modules/PETTumorSegmentationEffect|PETTumorSegmentationEffect]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PETTumorSegmentation|PETTumorSegmentation]] extension)</small> | ||
| Line 342: | Line 342: | ||
* [[Documentation/Nightly/Modules/FastGrowCut|FastGrowCut]] <small>(loadable, bundled in [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut FastGrowCutEffect] extension)</small> | * [[Documentation/Nightly/Modules/FastGrowCut|FastGrowCut]] <small>(loadable, bundled in [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut FastGrowCutEffect] extension)</small> | ||
* [[Documentation/Nightly/Extensions/SlicerPathology|QuickTCGA]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerPathology|SlicerPathology]] extension)</small> | * [[Documentation/Nightly/Extensions/SlicerPathology|QuickTCGA]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerPathology|SlicerPathology]] extension)</small> | ||
| − | * [ | + | * [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|FastGrowCutSegmenter]] <small>(loadable, bundled in [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|CarreraSlice]] extension)</small> |
* [[Documentation/Nightly/Extensions/SlicerPathology|ShortCutCore]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerPathology|SlicerPathology]] extension)</small> | * [[Documentation/Nightly/Extensions/SlicerPathology|ShortCutCore]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerPathology|SlicerPathology]] extension)</small> | ||
* [http://publish.uwo.ca/~dchen285/GraphCutSegment/GraphCutSegment.html GraphCutInteractiveSegmenter] <small>(loadable, bundled in [http://publish.uwo.ca/~dchen285/GraphCutSegment/GraphCutSegment.html GraphCutSegment] extension)</small> | * [http://publish.uwo.ca/~dchen285/GraphCutSegment/GraphCutSegment.html GraphCutInteractiveSegmenter] <small>(loadable, bundled in [http://publish.uwo.ca/~dchen285/GraphCutSegment/GraphCutSegment.html GraphCutSegment] extension)</small> | ||
| − | * [ | + | * [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|CarreraSlice]] <small>(loadable, bundled in [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|CarreraSlice]] extension)</small> |
<span id='Modules_by_category_Exporter'></span> | <span id='Modules_by_category_Exporter'></span> | ||
== Exporter == | == Exporter == | ||
| Line 784: | Line 784: | ||
* BRAINSTransformConvert <small>(cli, built-in)</small> | * BRAINSTransformConvert <small>(cli, built-in)</small> | ||
* [[Documentation/Nightly/Extensions/SlicerIGT|BreachWarning]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small> | * [[Documentation/Nightly/Extensions/SlicerIGT|BreachWarning]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small> | ||
| − | * [ | + | * [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|CarreraSlice]] <small>(loadable, bundled in [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|CarreraSlice]] extension)</small> |
* [[Documentation/Nightly/Modules/CastScalarVolume|CastScalarVolume]] <small>(cli, built-in)</small> | * [[Documentation/Nightly/Modules/CastScalarVolume|CastScalarVolume]] <small>(cli, built-in)</small> | ||
* [http://slicer.vmtk.org/ CenterlineComputation] <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small> | * [http://slicer.vmtk.org/ CenterlineComputation] <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small> | ||
| Line 880: | Line 880: | ||
* [[Documentation/Nightly/Modules/ExtractSkeleton|ExtractSkeleton]] <small>(cli, built-in)</small> | * [[Documentation/Nightly/Modules/ExtractSkeleton|ExtractSkeleton]] <small>(cli, built-in)</small> | ||
* [[Documentation/Nightly/Modules/FastGrowCut|FastGrowCut]] <small>(loadable, bundled in [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut FastGrowCutEffect] extension)</small> | * [[Documentation/Nightly/Modules/FastGrowCut|FastGrowCut]] <small>(loadable, bundled in [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut FastGrowCutEffect] extension)</small> | ||
| − | * [ | + | * [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|FastGrowCutSegmenter]] <small>(loadable, bundled in [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|CarreraSlice]] extension)</small> |
* [[Documentation/Nightly/Modules/FiberBundleLabelSelect|FiberBundleLabelSelect]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small> | * [[Documentation/Nightly/Modules/FiberBundleLabelSelect|FiberBundleLabelSelect]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small> | ||
* [[Documentation/Nightly/Modules/FiberBundleToLabelMap|FiberBundleToLabelMap]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small> | * [[Documentation/Nightly/Modules/FiberBundleToLabelMap|FiberBundleToLabelMap]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small> | ||
| Line 936: | Line 936: | ||
* [[Documentation/Nightly/Extensions/DCMQI|itkimage2paramap]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/DCMQI|DCMQI]] extension)</small> | * [[Documentation/Nightly/Extensions/DCMQI|itkimage2paramap]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/DCMQI|DCMQI]] extension)</small> | ||
* [[Documentation/Nightly/Extensions/DCMQI|itkimage2segimage]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/DCMQI|DCMQI]] extension)</small> | * [[Documentation/Nightly/Extensions/DCMQI|itkimage2segimage]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/DCMQI|DCMQI]] extension)</small> | ||
| − | * [ | + | * [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|KUtil]] <small>(scripted, bundled in [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|CarreraSlice]] extension)</small> |
* [[Documentation/Nightly/Modules/LabelAddition|LabelAddition]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small> | * [[Documentation/Nightly/Modules/LabelAddition|LabelAddition]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small> | ||
* [[Documentation/Nightly/Modules/LabelExtraction|LabelExtraction]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small> | * [[Documentation/Nightly/Modules/LabelExtraction|LabelExtraction]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small> | ||
Revision as of 02:17, 27 November 2019
Home < Documentation < Nightly < ModuleExtensionListing
- Modules by category
- Modules by name
- Modules by contributing organization
- Modules by contributing individual
- Modules by type
- Modules by extension
- Extensions by category
- Extensions by name
- Extensions by contributing organization
- Extensions by contributing individual
Modules by category
46 categories:
- Astronomy
- Cardiac
- Cardiac MRI Toolkit
- Chest Imaging Platform
- CIP
- Converters
- Developer Tools
- Diffusion
- Editor Effects
- EditorEffect
- Endoscopy
- Examples
- Exporter
- Filter
- Filtering
- IGT
- Informatics
- Legacy
- Libraries
- Machine Learning
- Margin Calculator
- Mesh Generation
- MeshGeneration
- Microscopy
- MultiVolume Support
- Pathology
- Perk Tutor
- Plastimatch
- Quantification
- Radiology
- Radiotherapy
- Registration
- Segmentation
- Sequences
- Slicelets
- SlicerProstate
- Surface Models
- TestCases
- Testing
- Ultrasound
- Uncategorized
- Utilities
- Vascular Modeling Toolkit
- Virtual Reality
- Web System Tools
- Wizards
- XNATSlicer
Astronomy
- AstroVolume (loadable, bundled in SlicerAstro extension)
- AstroReproject (loadable, bundled in SlicerAstro extension)
- AstroStatistics (loadable, bundled in SlicerAstro extension)
- AstroMasking (loadable, bundled in SlicerAstro extension)
- AstroSmoothing (loadable, bundled in SlicerAstro extension)
- AstroSampleData (scripted, bundled in SlicerAstro extension)
- AstroProfiles (loadable, bundled in SlicerAstro extension)
- AstroMomentMaps (loadable, bundled in SlicerAstro extension)
- AstroPVSlice (loadable, bundled in SlicerAstro extension)
- AstroPVDiagram (loadable, bundled in SlicerAstro extension)
- AstroModeling (loadable, bundled in SlicerAstro extension)
- AstroWelcome (loadable, bundled in SlicerAstro extension)
- SlicerAstroDataProbe (scripted, bundled in SlicerAstro extension)
Cardiac
- Philips4dUsDicomPatcher (scripted, bundled in SlicerHeart extension)
- ValveView (scripted, bundled in SlicerHeart extension)
Cardiac MRI Toolkit
- CMRToolkitPVAntrumCut (cli, bundled in Cardiac_MRI_Toolkit extension)
- CMRToolkitBooleanREMOVEFilter (cli, bundled in Cardiac_MRI_Toolkit extension)
- LASegmentationWorkflow (scripted, bundled in Cardiac_MRI_Toolkit extension)
- CMRToolkitRegistrationBRAINSFit (scripted, bundled in Cardiac_MRI_Toolkit extension)
- CMRToolkitAutomaticLeftAtrialScar (cli, bundled in Cardiac_MRI_Toolkit extension)
- CMRToolkitConnectedThresholdFilter (cli, bundled in Cardiac_MRI_Toolkit extension)
- CMRToolkitWizard (scripted, bundled in Cardiac_MRI_Toolkit extension)
- CMRToolkitIsolatedConnectedFilter (cli, bundled in Cardiac_MRI_Toolkit extension)
- CMRToolkitInhomogeneityCorrection (cli, bundled in Cardiac_MRI_Toolkit extension)
- CMRToolkitAxialDilate (cli, bundled in Cardiac_MRI_Toolkit extension)
- ScarVisualization (scripted, bundled in Cardiac_MRI_Toolkit extension)
- CMRToolkitRegistration (scripted, bundled in Cardiac_MRI_Toolkit extension)
- CMRToolkitLASegmentationGraphCuts (cli, bundled in Cardiac_MRI_Toolkit extension)
Chest Imaging Platform
- CIP_MIPViewer (scripted, bundled in Chest_Imaging_Platform extension)
- CIP_BodyComposition (scripted, bundled in Chest_Imaging_Platform extension)
- CIP_InteractiveLobeSegmentation (scripted, bundled in Chest_Imaging_Platform extension)
- CIP_TracheaStentPlanning (scripted, bundled in Chest_Imaging_Platform extension)
- CIP_LesionModel (scripted, bundled in Chest_Imaging_Platform extension)
- AirwayInspector (loadable, bundled in Chest_Imaging_Platform extension)
- CIP_PAARatio (scripted, bundled in Chest_Imaging_Platform extension)
- CIP_CalciumScoring (scripted, bundled in Chest_Imaging_Platform extension)
- CIP_ParenchymaAnalysis (scripted, bundled in Chest_Imaging_Platform extension)
- CIP_ParenchymaSubtypeTraining (scripted, bundled in Chest_Imaging_Platform extension)
- CIP_PointsLabelling (scripted, bundled in Chest_Imaging_Platform extension)
Toolkit
Particles
- ExtractParticlesFromChestRegionChestType (cli, bundled in Chest_Imaging_Platform extension)
- FilterVesselParticleData (cli, bundled in Chest_Imaging_Platform extension)
- RemoveParticlesFromParticlesDataSet (cli, bundled in Chest_Imaging_Platform extension)
- PerturbParticles (cli, bundled in Chest_Imaging_Platform extension)
- MergeParticleDataSets (cli, bundled in Chest_Imaging_Platform extension)
- FilterAirwayParticleData (cli, bundled in Chest_Imaging_Platform extension)
- FitLobeSurfaceModelsToParticleData (cli, bundled in Chest_Imaging_Platform extension)
- ClassifyFissureParticles (cli, bundled in Chest_Imaging_Platform extension)
- GenerateStenciledLabelMapFromParticles (cli, bundled in Chest_Imaging_Platform extension)
- FilterFissureParticleData (cli, bundled in Chest_Imaging_Platform extension)
Processing
- ResampleLabelMap (cli, bundled in Chest_Imaging_Platform extension)
- RescaleLabelMap (cli, bundled in Chest_Imaging_Platform extension)
- GenerateMedianFilteredImage (cli, bundled in Chest_Imaging_Platform extension)
- LabelMapFromRegionAndTypePoints (cli, bundled in Chest_Imaging_Platform extension)
- CropLung (cli, bundled in Chest_Imaging_Platform extension)
- GenerateNLMFilteredImage (cli, bundled in Chest_Imaging_Platform extension)
- RemoveChestTypeFromLabelMapUsingParticles (cli, bundled in Chest_Imaging_Platform extension)
- GenerateAtlasConvexHull (cli, bundled in Chest_Imaging_Platform extension)
- RemapLabelMap (cli, bundled in Chest_Imaging_Platform extension)
- ComputeFissureFeatureVectors (cli, bundled in Chest_Imaging_Platform extension)
- GenerateLobeSurfaceModels (cli, bundled in Chest_Imaging_Platform extension)
- FilterConnectedComponents (cli, bundled in Chest_Imaging_Platform extension)
- ExtractChestLabelMap (cli, bundled in Chest_Imaging_Platform extension)
- PerformMorphological (cli, bundled in Chest_Imaging_Platform extension)
- ExtractFissureBoundaryFromLobeMap (cli, bundled in Chest_Imaging_Platform extension)
- EnhanceFissuresInImage (cli, bundled in Chest_Imaging_Platform extension)
- GraphCutsOptimization (cli, bundled in Chest_Imaging_Platform extension)
- GenerateDistanceMapFromLabelMap (cli, bundled in Chest_Imaging_Platform extension)
- ResampleCT (cli, bundled in Chest_Imaging_Platform extension)
- ComputeFeatureStrength (cli, bundled in Chest_Imaging_Platform extension)
- ComputeDistanceMap (cli, bundled in Chest_Imaging_Platform extension)
- QualityControl (cli, bundled in Chest_Imaging_Platform extension)
- GenerateImageSubVolumes (cli, bundled in Chest_Imaging_Platform extension)
Quantification
- EvaluateLungLobeSegmentationResults (cli, bundled in Chest_Imaging_Platform extension)
- GetTransformationKappa (cli, bundled in Chest_Imaging_Platform extension)
- ReadWriteImageData (cli, bundled in Chest_Imaging_Platform extension)
- ComputeIntensityStatistics (cli, bundled in Chest_Imaging_Platform extension)
- ComputeCrossSectionalArea (cli, bundled in Chest_Imaging_Platform extension)
- GenerateParenchymaPhenotypes (cli, bundled in Chest_Imaging_Platform extension)
- LabelParticlesByChestRegionChestType (cli, bundled in Chest_Imaging_Platform extension)
- GetTransformationSimilarityMetric (cli, bundled in Chest_Imaging_Platform extension)
- GetTransformationKappa2D (cli, bundled in Chest_Imaging_Platform extension)
Registration
- Introduction to Registration (by Dominik Meier)
- RegisterLungAtlas (cli, bundled in Chest_Imaging_Platform extension)
- RegisterLabelMaps (cli, bundled in Chest_Imaging_Platform extension)
- RegisterCT (cli, bundled in Chest_Imaging_Platform extension)
Segmentation
- GenerateOtsuLungCast (cli, bundled in Chest_Imaging_Platform extension)
- SegmentLungAirways (cli, bundled in Chest_Imaging_Platform extension)
- SegmentLungLobes (cli, bundled in Chest_Imaging_Platform extension)
- GeneratePartialLungLabelMap (cli, bundled in Chest_Imaging_Platform extension)
- GenerateSimpleLungMask (cli, bundled in Chest_Imaging_Platform extension)
- SplitLeftLungRightLung (cli, bundled in Chest_Imaging_Platform extension)
- GenerateBinaryThinning3D (cli, bundled in Chest_Imaging_Platform extension)
- GenerateLesionSegmentation (cli, bundled in Chest_Imaging_Platform extension)
Utils
- ConvertDicom (cli, bundled in Chest_Imaging_Platform extension)
- RegionTypeLocationsToROIVolume (cli, bundled in Chest_Imaging_Platform extension)
- ReadVTKWriteNRRDs (cli, bundled in Chest_Imaging_Platform extension)
- GenerateModel (cli, bundled in Chest_Imaging_Platform extension)
- GenerateOverlayImages (cli, bundled in Chest_Imaging_Platform extension)
- ExecuteSystemCommand (cli, bundled in Chest_Imaging_Platform extension)
- GetStructuresInLabelMap (cli, bundled in Chest_Imaging_Platform extension)
- FindPatchMatch (cli, bundled in Chest_Imaging_Platform extension)
- ConvertChestRegionChestTypeToLabelMapValue (cli, bundled in Chest_Imaging_Platform extension)
- MaskOutLabelMapStructures (cli, bundled in Chest_Imaging_Platform extension)
- ReadNRRDsWriteVTK (cli, bundled in Chest_Imaging_Platform extension)
- ConvertLabelMapValueToChestRegionChestType (cli, bundled in Chest_Imaging_Platform extension)
- ReadWriteRegionAndTypePoints (cli, bundled in Chest_Imaging_Platform extension)
- MergeChestLabelMaps (cli, bundled in Chest_Imaging_Platform extension)
- ReadVidaWriteCIP (cli, bundled in Chest_Imaging_Platform extension)
- ReadDicomWriteTags (cli, bundled in Chest_Imaging_Platform extension)
- TransferRegionAndTypeIndicesToFromPoints (cli, bundled in Chest_Imaging_Platform extension)
CIP
- CIP_ (scripted, bundled in Chest_Imaging_Platform extension)
- CIP_Common (scripted, bundled in Chest_Imaging_Platform extension)
Converters
- QuadEdgeSurfaceMesher (cli, bundled in SlicerProstate extension)
- CropVolume (loadable, built-in)
- OrientScalarVolume (cli, built-in)
- ConvertVTK (cli, bundled in UKFTractography extension)
- VectorToScalarVolume (scripted, built-in)
- CreateDICOMSeries (cli, built-in)
- ParticlesDisplay (loadable, bundled in Chest_Imaging_Platform extension)
- RegionType (loadable, bundled in Chest_Imaging_Platform extension)
Developer Tools
- Cameras (loadable, built-in)
- ExecutionModelTour (cli, built-in)
- NodeModifiedStatistics (scripted, bundled in DebuggingTools extension)
- PyDevRemoteDebug (scripted, bundled in DebuggingTools extension)
- ExtensionWizard (scripted, built-in)
- NodeInfo (scripted, bundled in DebuggingTools extension)
- ImageMaker (cli, bundled in ImageMaker extension)
- ExtensionStats (scripted, bundled in DeveloperToolsForExtensions extension)
- DeveloperToolsForExtensions (scripted, bundled in DeveloperToolsForExtensions extension)
- EventBroker
- DoubleArrays (loadable, built-in)
DICOM Plugins
- DICOMParametricMapPlugin
- DicomUltrasoundPlugin
- DICOMSegmentationPlugin
- DICOMSlicerDataBundlePlugin
- DICOMTID1500Plugin
- DICOMPETSUVPlugin
- DICOMScalarVolumePlugin
- DICOMDiffusionVolumePlugin
- DICOMLongitudinalPETCTPlugin
- DicomSroImportPlugin
- DICOMRWVMPlugin
- DicomRtImportExportPlugin
- MultiVolumeImporterPlugin
Editor Extensions
- FastGrowCutEffect (scripted, bundled in FastGrowCutEffect extension)
- CarreraSliceEffect (scripted, bundled in CarreraSlice extension)
- QuickTCGAEffect (scripted, bundled in SlicerPathology extension)
- PETTumorSegmentationEffect (scripted, bundled in PETTumorSegmentation extension)
- BinaryWatershedEffect (scripted, bundled in IASEM extension)
- DoubleThresholdEffect (scripted, bundled in IASEM extension)
- ShortCutEffect (scripted, bundled in SlicerPathology extension)
Matlab
- MatlabModuleGenerator (loadable, bundled in MatlabBridge extension)
- MatlabCommander (cli, bundled in MatlabBridge extension)
Segment Editor Extensions
- SegmentEditorPETTumor (scripted, bundled in PETTumorSegmentation extension)
Utils
- SlicerProstate (scripted, bundled in SlicerProstate extension)
Diffusion
- DMRIInstall (scripted, built-in)
Diffusion Data Conversion
- DWIConvert (cli, built-in)
Diffusion Tensor Images
- ResampleDTIlogEuclidean (cli, bundled in ResampleDTIlogEuclidean extension)
Diffusion Weighted Images
- BRAINSDWICleanup (cli, built-in)
Import and Export
- DWIConvert (cli, built-in)
- DICOMTract_to_VTK (cli, bundled in SlicerDMRI extension)
- VTK_to_DICOMTract (cli, bundled in SlicerDMRI extension)
Process
- DiffusionWeightedVolumeMasking (cli, bundled in SlicerDMRI extension)
- DWIToDTIEstimation (cli, bundled in SlicerDMRI extension)
Quantify
- DiffusionTensorScalarMeasurements (cli, bundled in SlicerDMRI extension)
- FiberTractMeasurements (cli, bundled in SlicerDMRI extension)
Tractography
- TractographyInteractiveSeeding (loadable, bundled in SlicerDMRI extension)
- TractographyDisplay (loadable, bundled in SlicerDMRI extension)
- UKFTractography (cli, bundled in UKFTractography extension)
Region-based
- TractographyLabelMapSeeding (cli, bundled in SlicerDMRI extension)
- FiberBundleLabelSelect (cli, bundled in SlicerDMRI extension)
Utilities
- BRAINSDWICleanup (cli, built-in)
- ResampleDTIVolume (cli, built-in)
- FiberBundleToLabelMap (scripted, bundled in SlicerDMRI extension)
- ResampleScalarVectorDWIVolume (cli, built-in)
- DICOM2FullBrainTractography (scripted, bundled in SlicerDMRI extension)
Editor Effects
- WindowLevelEffect (scripted, bundled in WindowLevelEffect extension)
EditorEffect
- PETTumorSegmentation (loadable, bundled in PETTumorSegmentation extension)
Endoscopy
- Endoscopy (scripted, built-in)
Examples
- FastGrowCut (loadable, bundled in FastGrowCutEffect extension)
- QuickTCGA (loadable, bundled in SlicerPathology extension)
- FastGrowCutSegmenter (loadable, bundled in CarreraSlice extension)
- ShortCutCore (loadable, bundled in SlicerPathology extension)
- GraphCutInteractiveSegmenter (loadable, bundled in GraphCutSegment extension)
- CarreraSlice (loadable, bundled in CarreraSlice extension)
Exporter
- SlicerToKiwiExporter (scripted, bundled in SlicerToKiwiExporter extension)
Filter
- IslandRemoval (cli, built-in)
Filtering
- SegmentationSmoothing (cli, bundled in SlicerProstate extension)
- N4ITKBiasFieldCorrection (cli, built-in)
- ImageLabelCombine (cli, built-in)
- VotingBinaryHoleFillingImageFilter (cli, built-in)
- CheckerBoardFilter (cli, built-in)
- AstroSmoothing (loadable, bundled in SlicerAstro extension)
- ExtractSkeleton (cli, built-in)
- SimpleFilters (scripted, built-in)
- ThresholdScalarVolume (cli, built-in)
- HistogramMatching (cli, built-in)
Arithmetic
- MultiplyScalarVolumes (cli, built-in)
- AddScalarVolumes (cli, built-in)
- MaskScalarVolume (cli, built-in)
- SubtractScalarVolumes (cli, built-in)
- CastScalarVolume (cli, built-in)
- BlendVectorVolumes (cli, bundled in OpenCVExample extension)
Denoising
- CurvatureAnisotropicDiffusion (cli, built-in)
- GradientAnisotropicDiffusion (cli, built-in)
- MedianImageFilter (cli, built-in)
- GaussianBlurImageFilter (cli, built-in)
Morphology
- GrayscaleFillHoleImageFilter (cli, built-in)
- GrayscaleGrindPeakImageFilter (cli, built-in)
IGT
- Viewpoint (scripted, bundled in SlicerIGT extension)
- CollectFiducials (loadable, bundled in SlicerIGT extension)
- TransformFusion (loadable, bundled in SlicerIGT extension)
- GyroGuide (scripted, bundled in GyroGuide extension)
- PlusModelCatalogBrowser (scripted, bundled in SlicerIGT extension)
- CreateModels (loadable, bundled in SlicerIGT extension)
- NeedleFinder (scripted, bundled in NeedleFinder extension)
- TrackerStabilizer (loadable, bundled in TrackerStabilizer extension)
- PathExplorer (loadable, bundled in SlicerIGT extension)
- UltrasoundSnapshots (loadable, bundled in SlicerIGT extension)
- BreachWarning (loadable, bundled in SlicerIGT extension)
- FiducialRegistrationWizard (loadable, bundled in SlicerIGT extension)
- ModelRegistration (scripted, bundled in SlicerIGT extension)
- ResectionVolume (scripted, bundled in ResectionPlanner extension)
- PivotCalibration (loadable, bundled in SlicerIGT extension)
- VolumeResliceDriver (loadable, bundled in SlicerIGT extension)
- OpenIGTLinkRemote (loadable, bundled in SlicerIGT extension)
- FiducialsToModelRegistration (scripted, bundled in SlicerIGT extension)
- Watchdog (loadable, bundled in SlicerIGT extension)
- CornerAnnotation (scripted, bundled in CornerAnnotation extension)
- OpenIGTLinkIF (loadable, built-in)
- MarkupsToModel (loadable, bundled in SlicerIGT extension)
- iGyne (scripted, bundled in iGyne extension)
- PlusRemote (scripted, bundled in SlicerIGT extension)
Informatics
- tid1500writer (cli, bundled in DCMQI extension)
- mpReviewPreprocessor (scripted, bundled in mpReview extension)
- SEG2NRRD (cli)
- TCIABrowser (scripted, bundled in TCIABrowser extension)
- segimage2itkimage (cli, bundled in DCMQI extension)
- mpReview (scripted, bundled in mpReview extension)
- Tables (loadable, built-in)
- Data (loadable, built-in)
- DumpSEGFrame (cli)
- tid1500reader (cli, bundled in DCMQI extension)
- Terminologies (loadable, built-in)
- Units (loadable, built-in)
- DICOM (scripted, built-in)
- SampleData (scripted, built-in)
- Colors (loadable, built-in)
- CurveMaker (scripted, bundled in CurveMaker extension)
- Annotations (loadable, built-in)
- Markups (loadable, built-in)
- SubjectHierarchy (loadable, built-in)
- QuantitativeReporting (scripted, bundled in QuantitativeReporting extension)
Converters
- itkimage2paramap (cli, bundled in DCMQI extension)
- paramap2itkimage (cli, bundled in DCMQI extension)
- itkimage2segimage (cli, bundled in DCMQI extension)
- EncodeSEG (cli)
Legacy
Converters
- BSplineToDeformationField (cli, built-in)
Filtering
- OtsuThresholdImageFilter (cli, built-in)
- ResampleScalarVolume (cli, built-in)
Registration
- TestGridTransformRegistration (cli, built-in)
- ExpertAutomatedRegistration (cli, built-in)
Work in Progress
Diffusion Tensor
Test
- DiffusionTensorTest (cli, built-in)
Libraries
- OpenCV (loadable, bundled in SlicerOpenCV extension)
Machine Learning
Margin Calculator
- MarginCalculator (scripted, bundled in MarginCalculator extension)
- DoseMorphology (loadable, bundled in MarginCalculator extension)
- SyntheticRTDose (scripted, bundled in MarginCalculator extension)
Mesh Generation
- CleaverCLI (cli, bundled in CleaverExtension extension)
MeshGeneration
- BodyCentricCubicMesh (cli, bundled in CBC_3D_I2MConversion extension)
Microscopy
- IASEMImportSeries (cli, bundled in IASEM extension)
- IASEMImport (cli, bundled in IASEM extension)
- BinShrink (cli, bundled in IASEM extension)
- LabelObjectStatistics (scripted, bundled in IASEM extension)
- SpacingAwareCurvatureDiffusion (cli, bundled in IASEM extension)
MultiVolume Support
- MultiVolumeImporter (scripted, built-in)
- MultiVolumeExplorer (loadable, built-in)
Pathology
- SlicerPathology (scripted, bundled in SlicerPathology extension)
Perk Tutor
- PythonMetricsCalculator (scripted, bundled in PerkTutor extension)
- TransformRecorder (loadable, bundled in PerkTutor extension)
- PerkEvaluator (loadable, bundled in PerkTutor extension)
- WorkflowSegmentation (loadable, bundled in PerkTutor extension)
Plastimatch
- DicomSroExport (scripted, bundled in SlicerRT extension)
- PlmRegister (scripted, bundled in SlicerRT extension)
Registration
- plastimatch_slicer_bspline (cli, bundled in SlicerRT extension)
- plastimatch_slicer_landwarp (cli, bundled in SlicerRT extension)
Utilities
- PlastimatchPy (loadable, bundled in SlicerRT extension)
Quantification
- DSCMRIAnalysis (cli, bundled in DSCMRIAnalysis extension)
- PETLiverUptakeMeasurement (cli, bundled in PETLiverUptakeMeasurement extension)
- PETIndiC (scripted, bundled in PET-IndiC extension)
- Q3DC (scripted, bundled in Q3DC extension)
- HeterogeneityCAD (scripted, bundled in OpenCAD extension)
- ShapeQuantifier (scripted, bundled in ShapeQuantifier extension)
- QuantitativeIndicesCLI (cli, bundled in PET-IndiC extension)
- PETStandardUptakeValueComputation (cli, built-in)
- SUVFactorCalculator (cli, bundled in PETDICOMExtension extension)
- SpinalCurvatureMeasurement (scripted, bundled in Scoliosis extension)
- QuantitativeIndicesTool (scripted, bundled in PET-IndiC extension)
- SegmentStatistics (scripted, built-in)
- LabelStatistics (scripted, built-in)
- MeshStatistics (scripted, bundled in MeshStatisticsExtension extension)
- DWModeling (cli, bundled in SlicerProstate extension)
- BRAINSLabelStats (cli, built-in)
- PkModeling (cli, bundled in PkModeling extension)
- PETSUVImageMaker (cli, bundled in LongitudinalPETCT extension)
- DataProbe (scripted, built-in)
- ModelToModelDistance (cli, bundled in ModelToModelDistance extension)
- T1Mapping (cli, bundled in T1Mapping extension)
- SlicerAstroDataProbe (scripted, bundled in SlicerAstro extension)
- AnglePlanes (scripted, bundled in ShapeQuantifier extension)
- dPetBrainQuantification (scripted, bundled in PetSpectAnalysis extension)
- PickAndPaint (scripted, bundled in PickAndPaintExtension extension)
- QuantitativeReporting (scripted, bundled in QuantitativeReporting extension)
- DiceComputation (loadable, bundled in DiceComputation extension)
ChangeQuantification
- IntensityDifferenceMetric (cli, bundled in ChangeTracker extension)
Radiology
- SliceTracker (scripted, bundled in SliceTracker extension)
- SliceTrackerRegistration (scripted, bundled in SliceTracker extension)
- SliceTrackerZFrameRegistration (scripted, bundled in SliceTracker extension)
Radiotherapy
- Beams (loadable, bundled in SlicerRT extension)
- DvhComparison (scripted, bundled in SlicerRT extension)
- DoseVolumeHistogram (loadable, bundled in SlicerRT extension)
- DicomRtImportExport (loadable, bundled in SlicerRT extension)
- DoseAccumulation (loadable, bundled in SlicerRT extension)
- ExternalBeamPlanning (loadable, bundled in SlicerRT extension)
- SegmentComparison (loadable, bundled in SlicerRT extension)
- PlanarImage (loadable, bundled in SlicerRT extension)
- Isodose (loadable, bundled in SlicerRT extension)
- DoseComparison (loadable, bundled in SlicerRT extension)
- SegmentMorphology (loadable, bundled in SlicerRT extension)
- DicomSroImport (loadable, bundled in SlicerRT extension)
Registration
- Transforms (loadable, built-in)
- BRAINSResize (cli, built-in)
- PerformMetricTest (cli, built-in)
- LandmarkRegistration (scripted, built-in)
- PBNRR (cli, bundled in PBNRR extension)
- BRAINSResample (cli, built-in)
- BRAINSFit (cli, built-in)
CMF Registration
- ApplyMatrix (cli, bundled in CMFreg extension)
- LabelExtraction (cli, bundled in CMFreg extension)
- LabelAddition (cli, bundled in CMFreg extension)
- Downsize (cli, bundled in CMFreg extension)
- SurfaceRegistration (scripted, bundled in CMFreg extension)
Voxelbase Registration
- NonGrowing (cli, bundled in CMFreg extension)
- Growing (cli, bundled in CMFreg extension)
- MaskCreation (cli, bundled in CMFreg extension)
Label Registration
- DistanceMapBasedRegistration (scripted, bundled in SlicerProstate extension)
Specialized
- ACPCTransform (cli, built-in)
- FiducialRegistration (cli, built-in)
- BRAINSDemonWarp (cli, built-in)
- Reformat (loadable, built-in)
- ScatteredTransform (cli, bundled in ScatteredTransform extension)
- VBRAINSDemonWarp (cli, built-in)
Segmentation
- ROBEXBrainExtraction (cli, bundled in ROBEXBrainExtraction extension)
- EMSegmentQuick (loadable, built-in)
- VolumeClipWithModel (scripted, bundled in VolumeClip extension)
- ABC (cli, bundled in ABC extension)
- VolumeClipToLabel (scripted, bundled in SliceTracker extension)
- AirwaySegmentationCLI (cli, bundled in AirwaySegmentation extension)
- LAScarSegmenter (cli, bundled in LAScarSegmenter extension)
- SegmentEditor (scripted, built-in)
- AirwaySegmentation (scripted, bundled in AirwaySegmentation extension)
- SkullStripper (cli, bundled in SkullStripper extension)
- SegmentEditorFastMarching (scripted, bundled in SegmentEditorExtraEffects extension)
- SobolevSegmenter (cli, bundled in SobolevSegmenter extension)
- VolumeClipWithRoi (scripted, bundled in VolumeClip extension)
- SegmentCAD (scripted, bundled in OpenCAD extension)
- SwissSkullStripper (cli, bundled in SwissSkullStripper extension)
- SegmentEditorFloodFilling (scripted, bundled in SegmentEditorExtraEffects extension)
- Wasp (scripted, bundled in Wasp extension)
- Editor (scripted, built-in)
- SimpleRegionGrowingSegmentation (cli, built-in)
- EMSegment (loadable, built-in)
- QuantitativeReporting (scripted, bundled in QuantitativeReporting extension)
- IntensitySegmenter (cli, bundled in IntensitySegmenter extension)
- SegmentEditorWatershed (scripted, bundled in SegmentEditorExtraEffects extension)
Specialized
- BRAINSROIAuto (cli, built-in)
- RobustStatisticsSegmenter (cli, built-in)
- EMSegmentCommandLine (cli, built-in)
Sequences
- Sequences (loadable, bundled in Sequences extension)
- SequenceBrowser (loadable, bundled in Sequences extension)
- MetafileImporter (loadable, bundled in Sequences extension)
Slicelets
- FilmDosimetryAnalysis (scripted, bundled in FilmDosimetryAnalysis extension)
- GelDosimetryAnalysis (scripted, bundled in GelDosimetryAnalysis extension)
- GelDosimetryAnalysisAlgo (loadable, bundled in GelDosimetryAnalysis extension)
SlicerProstate
- ZFrameCalibration (cli, bundled in SliceTracker extension)
Surface Models
- SurfaceToolbox (scripted, built-in)
- GrayscaleModelMaker (cli, built-in)
- ModelMaker (cli, built-in)
- ModelToLabelMap (cli, built-in)
- MergeModels (cli, built-in)
- EasyClip (scripted, bundled in EasyClip extension)
- LabelMapSmoothing (cli, built-in)
- MeshToLabelMap (cli, bundled in MeshToLabelMap extension)
- ProbeVolumeWithModel (cli, built-in)
- TextureModel (scripted, bundled in SlicerIGT extension)
TestCases
- SEGExporterSelfTest
Testing
- CLI4Test
- ThresholdThreadingTest
- ScoliosisMonitoring (scripted, bundled in Scoliosis extension)
- SlicerMRBSaveRestoreCheckPathsTest
- CLIROITest (cli, built-in)
- PerformanceTests
- SlicerMRBMultipleSaveRestoreTest
- SlicerMRBTest
- SEGExporterSelfTest
- SelfTests
- SlicerMRBMultipleSaveRestoreLoopTest
IGT Tests
- BreachWarningSelfTest
- WatchdogSelfTest
SlicerRT Tests
- IGRTWorkflow_SelfTest
- BatchStructureSetConversion (scripted, bundled in SlicerRT extension)
TestCases
- AtlasTests
- AddStorableDataAfterSceneViewTest
- test_tractography_display
- SlicerTransformInteractionTest1
- RSNAQuantTutorial
- NeurosurgicalPlanningTutorialMarkupsSelfTest
- ChangeTrackerSelfTest
- FiducialLayoutSwitchBug1914
- GraphCutSegmentSelfTest
- SlicerBoundsTest
- UtilTest
- Charting (scripted, built-in)
- CardiacAgatstonMeasures (scripted, bundled in CardiacAgatstonMeasures extension)
- fiber_visibility_crash2438
- RSNAVisTutorial
- JRC2013Vis
- AddManyMarkupsFiducialTest
- CropVolumeSelfTest
- SliceLinkLogic (scripted, built-in)
- VolumeRenderingSceneClose (scripted, built-in)
- slicerCloseCrashBug2590
- CLIEventTest
- NsgPlanTracto (scripted, bundled in SlicerDMRI extension)
- MarkupsWidgetsSelfTest
- TablesSelfTest
- SlicerOrientationSelectorTest
- MarkupsInViewsSelfTest
- TwoCLIsInParallelTest
- SubjectHierarchyCorePluginsSelfTest
- SubjectHierarchyGenericSelfTest
- ScenePerformance (scripted, built-in)
- MarkupsInCompareViewersSelfTest
- sceneImport2428
- RSNA2012ProstateDemo
- DTINotReproducibleIssue3977
- TwoCLIsInARowTest
- ColorsScalarBarSelfTest
- BRAINSFitRigidRegistrationCrashIssue4139
- Slicer4Minute (scripted, built-in)
- ViewControllersSliceInterpolationBug1926
Ultrasound
- ScanConvertCurvilinearArray (cli, bundled in SlicerITKUltrasound extension)
- ScanConvertPhasedArray3D (cli, bundled in SlicerITKUltrasound extension)
- ScanConvertSliceSeries (cli, bundled in SlicerITKUltrasound extension)
Uncategorized
- ShapeQuantifierCore (scripted, bundled in ShapeQuantifier extension)
- DatabaseInteractorLib (scripted, bundled in DatabaseInteractor extension)
Utilities
- ScreenCapture (scripted, built-in)
- DataStore (loadable, built-in)
- DICOMPatcher (scripted, built-in)
- BRAINSStripRotation (cli, built-in)
- EMSegmentTransformToNewFormat (cli, built-in)
BRAINS
- BRAINSTransformConvert (cli, built-in)
Vascular Modeling Toolkit
- CenterlineComputation (scripted, bundled in VMTK extension)
- LevelSetSegmentation (scripted, bundled in VMTK extension)
- VesselnessFiltering (scripted, bundled in VMTK extension)
Virtual Reality
- VirtualReality (loadable, bundled in SlicerVirtualReality extension)
Web System Tools
- DatabaseInteractor (scripted, bundled in DatabaseInteractor extension)
Wizards
- CompareVolumes (scripted, built-in)
- ChangeTracker (scripted, bundled in ChangeTracker extension)
XNATSlicer
- XnatSlicer (scripted, bundled in XNATSlicer extension)
Modules by name
367 modules:
- ABC (cli, bundled in ABC extension)
- ACPCTransform (cli, built-in)
- AddScalarVolumes (cli, built-in)
- AirwayInspector (loadable, bundled in Chest_Imaging_Platform extension)
- AirwaySegmentation (scripted, bundled in AirwaySegmentation extension)
- AirwaySegmentationCLI (cli, bundled in AirwaySegmentation extension)
- AnglePlanes (scripted, bundled in ShapeQuantifier extension)
- Annotations (loadable, built-in)
- ApplyMatrix (cli, bundled in CMFreg extension)
- AstroMasking (loadable, bundled in SlicerAstro extension)
- AstroModeling (loadable, bundled in SlicerAstro extension)
- AstroMomentMaps (loadable, bundled in SlicerAstro extension)
- AstroProfiles (loadable, bundled in SlicerAstro extension)
- AstroPVDiagram (loadable, bundled in SlicerAstro extension)
- AstroPVSlice (loadable, bundled in SlicerAstro extension)
- AstroReproject (loadable, bundled in SlicerAstro extension)
- AstroSampleData (scripted, bundled in SlicerAstro extension)
- AstroSmoothing (loadable, bundled in SlicerAstro extension)
- AstroStatistics (loadable, bundled in SlicerAstro extension)
- AstroVolume (loadable, bundled in SlicerAstro extension)
- AstroWelcome (loadable, bundled in SlicerAstro extension)
- Beams (loadable, bundled in SlicerRT extension)
- BinShrink (cli, bundled in IASEM extension)
- BlendVectorVolumes (cli, bundled in OpenCVExample extension)
- BodyCentricCubicMesh (cli, bundled in CBC_3D_I2MConversion extension)
- BRAINSDemonWarp (cli, built-in)
- BRAINSDWICleanup (cli, built-in)
- BRAINSFit (cli, built-in)
- BRAINSLabelStats (cli, built-in)
- BRAINSResample (cli, built-in)
- BRAINSResize (cli, built-in)
- BRAINSROIAuto (cli, built-in)
- BRAINSStripRotation (cli, built-in)
- BRAINSTransformConvert (cli, built-in)
- BreachWarning (loadable, bundled in SlicerIGT extension)
- CarreraSlice (loadable, bundled in CarreraSlice extension)
- CastScalarVolume (cli, built-in)
- CenterlineComputation (scripted, bundled in VMTK extension)
- ChangeTracker (scripted, bundled in ChangeTracker extension)
- CheckerBoardFilter (cli, built-in)
- CIP_ (scripted, bundled in Chest_Imaging_Platform extension)
- CIP_BodyComposition (scripted, bundled in Chest_Imaging_Platform extension)
- CIP_CalciumScoring (scripted, bundled in Chest_Imaging_Platform extension)
- CIP_Common (scripted, bundled in Chest_Imaging_Platform extension)
- CIP_InteractiveLobeSegmentation (scripted, bundled in Chest_Imaging_Platform extension)
- CIP_LesionModel (scripted, bundled in Chest_Imaging_Platform extension)
- CIP_MIPViewer (scripted, bundled in Chest_Imaging_Platform extension)
- CIP_PAARatio (scripted, bundled in Chest_Imaging_Platform extension)
- CIP_ParenchymaAnalysis (scripted, bundled in Chest_Imaging_Platform extension)
- CIP_ParenchymaSubtypeTraining (scripted, bundled in Chest_Imaging_Platform extension)
- CIP_PointsLabelling (scripted, bundled in Chest_Imaging_Platform extension)
- CIP_TracheaStentPlanning (scripted, bundled in Chest_Imaging_Platform extension)
- ClassifyFissureParticles (cli, bundled in Chest_Imaging_Platform extension)
- CleaverCLI (cli, bundled in CleaverExtension extension)
- CMRToolkitAutomaticLeftAtrialScar (cli, bundled in Cardiac_MRI_Toolkit extension)
- CMRToolkitAxialDilate (cli, bundled in Cardiac_MRI_Toolkit extension)
- CMRToolkitBooleanREMOVEFilter (cli, bundled in Cardiac_MRI_Toolkit extension)
- CMRToolkitConnectedThresholdFilter (cli, bundled in Cardiac_MRI_Toolkit extension)
- CMRToolkitInhomogeneityCorrection (cli, bundled in Cardiac_MRI_Toolkit extension)
- CMRToolkitIsolatedConnectedFilter (cli, bundled in Cardiac_MRI_Toolkit extension)
- CMRToolkitLASegmentationGraphCuts (cli, bundled in Cardiac_MRI_Toolkit extension)
- CMRToolkitPVAntrumCut (cli, bundled in Cardiac_MRI_Toolkit extension)
- CMRToolkitRegistration (scripted, bundled in Cardiac_MRI_Toolkit extension)
- CMRToolkitRegistrationBRAINSFit (scripted, bundled in Cardiac_MRI_Toolkit extension)
- CMRToolkitWizard (scripted, bundled in Cardiac_MRI_Toolkit extension)
- CollectFiducials (loadable, bundled in SlicerIGT extension)
- Colors (loadable, built-in)
- CompareVolumes (scripted, built-in)
- ComputeCrossSectionalArea (cli, bundled in Chest_Imaging_Platform extension)
- ComputeDistanceMap (cli, bundled in Chest_Imaging_Platform extension)
- ComputeFeatureStrength (cli, bundled in Chest_Imaging_Platform extension)
- ComputeFissureFeatureVectors (cli, bundled in Chest_Imaging_Platform extension)
- ComputeIntensityStatistics (cli, bundled in Chest_Imaging_Platform extension)
- ConvertChestRegionChestTypeToLabelMapValue (cli, bundled in Chest_Imaging_Platform extension)
- ConvertDicom (cli, bundled in Chest_Imaging_Platform extension)
- ConvertLabelMapValueToChestRegionChestType (cli, bundled in Chest_Imaging_Platform extension)
- ConvertVTK (cli, bundled in UKFTractography extension)
- CornerAnnotation (scripted, bundled in CornerAnnotation extension)
- CreateDICOMSeries (cli, built-in)
- CreateModels (loadable, bundled in SlicerIGT extension)
- CropLung (cli, bundled in Chest_Imaging_Platform extension)
- CropVolume (loadable, built-in)
- CurvatureAnisotropicDiffusion (cli, built-in)
- CurveMaker (scripted, bundled in CurveMaker extension)
- Data (loadable, built-in)
- DatabaseInteractor (scripted, bundled in DatabaseInteractor extension)
- DatabaseInteractorLib (scripted, bundled in DatabaseInteractor extension)
- DataProbe (scripted, built-in)
- DataStore (loadable, built-in)
- DeepInfer (scripted, bundled in DeepInfer extension)
- DiceComputation (loadable, bundled in DiceComputation extension)
- DICOM (scripted, built-in)
- DICOM2FullBrainTractography (scripted, bundled in SlicerDMRI extension)
- DICOMPatcher (scripted, built-in)
- DicomRtImportExport (loadable, bundled in SlicerRT extension)
- DicomSroExport (scripted, bundled in SlicerRT extension)
- DicomSroImport (loadable, bundled in SlicerRT extension)
- DICOMTract_to_VTK (cli, bundled in SlicerDMRI extension)
- DiffusionTensorScalarMeasurements (cli, bundled in SlicerDMRI extension)
- DiffusionWeightedVolumeMasking (cli, bundled in SlicerDMRI extension)
- DistanceMapBasedRegistration (scripted, bundled in SlicerProstate extension)
- DMRIInstall (scripted, built-in)
- DoseAccumulation (loadable, bundled in SlicerRT extension)
- DoseComparison (loadable, bundled in SlicerRT extension)
- DoseMorphology (loadable, bundled in MarginCalculator extension)
- DoseVolumeHistogram (loadable, bundled in SlicerRT extension)
- Downsize (cli, bundled in CMFreg extension)
- dPetBrainQuantification (scripted, bundled in PetSpectAnalysis extension)
- DSCMRIAnalysis (cli, bundled in DSCMRIAnalysis extension)
- DumpSEGFrame (cli)
- DvhComparison (scripted, bundled in SlicerRT extension)
- DWIConvert (cli, built-in)
- DWIToDTIEstimation (cli, bundled in SlicerDMRI extension)
- DWModeling (cli, bundled in SlicerProstate extension)
- EasyClip (scripted, bundled in EasyClip extension)
- Editor (scripted, built-in)
- EMSegment (loadable, built-in)
- EMSegmentCommandLine (cli, built-in)
- EMSegmentQuick (loadable, built-in)
- EMSegmentTransformToNewFormat (cli, built-in)
- EncodeSEG (cli)
- Endoscopy (scripted, built-in)
- EnhanceFissuresInImage (cli, bundled in Chest_Imaging_Platform extension)
- EvaluateLungLobeSegmentationResults (cli, bundled in Chest_Imaging_Platform extension)
- ExecuteSystemCommand (cli, bundled in Chest_Imaging_Platform extension)
- ExternalBeamPlanning (loadable, bundled in SlicerRT extension)
- ExtractChestLabelMap (cli, bundled in Chest_Imaging_Platform extension)
- ExtractFissureBoundaryFromLobeMap (cli, bundled in Chest_Imaging_Platform extension)
- ExtractParticlesFromChestRegionChestType (cli, bundled in Chest_Imaging_Platform extension)
- ExtractSkeleton (cli, built-in)
- FastGrowCut (loadable, bundled in FastGrowCutEffect extension)
- FastGrowCutSegmenter (loadable, bundled in CarreraSlice extension)
- FiberBundleLabelSelect (cli, bundled in SlicerDMRI extension)
- FiberBundleToLabelMap (scripted, bundled in SlicerDMRI extension)
- FiberTractMeasurements (cli, bundled in SlicerDMRI extension)
- FiducialRegistration (cli, built-in)
- FiducialRegistrationWizard (loadable, bundled in SlicerIGT extension)
- FiducialsToModelRegistration (scripted, bundled in SlicerIGT extension)
- FilmDosimetryAnalysis (scripted, bundled in FilmDosimetryAnalysis extension)
- FilterAirwayParticleData (cli, bundled in Chest_Imaging_Platform extension)
- FilterConnectedComponents (cli, bundled in Chest_Imaging_Platform extension)
- FilterFissureParticleData (cli, bundled in Chest_Imaging_Platform extension)
- FilterVesselParticleData (cli, bundled in Chest_Imaging_Platform extension)
- FindPatchMatch (cli, bundled in Chest_Imaging_Platform extension)
- FitLobeSurfaceModelsToParticleData (cli, bundled in Chest_Imaging_Platform extension)
- GaussianBlurImageFilter (cli, built-in)
- GelDosimetryAnalysis (scripted, bundled in GelDosimetryAnalysis extension)
- GelDosimetryAnalysisAlgo (loadable, bundled in GelDosimetryAnalysis extension)
- GenerateAtlasConvexHull (cli, bundled in Chest_Imaging_Platform extension)
- GenerateBinaryThinning3D (cli, bundled in Chest_Imaging_Platform extension)
- GenerateDistanceMapFromLabelMap (cli, bundled in Chest_Imaging_Platform extension)
- GenerateImageSubVolumes (cli, bundled in Chest_Imaging_Platform extension)
- GenerateLesionSegmentation (cli, bundled in Chest_Imaging_Platform extension)
- GenerateLobeSurfaceModels (cli, bundled in Chest_Imaging_Platform extension)
- GenerateMedianFilteredImage (cli, bundled in Chest_Imaging_Platform extension)
- GenerateModel (cli, bundled in Chest_Imaging_Platform extension)
- GenerateNLMFilteredImage (cli, bundled in Chest_Imaging_Platform extension)
- GenerateOtsuLungCast (cli, bundled in Chest_Imaging_Platform extension)
- GenerateOverlayImages (cli, bundled in Chest_Imaging_Platform extension)
- GenerateParenchymaPhenotypes (cli, bundled in Chest_Imaging_Platform extension)
- GeneratePartialLungLabelMap (cli, bundled in Chest_Imaging_Platform extension)
- GenerateSimpleLungMask (cli, bundled in Chest_Imaging_Platform extension)
- GenerateStenciledLabelMapFromParticles (cli, bundled in Chest_Imaging_Platform extension)
- GetStructuresInLabelMap (cli, bundled in Chest_Imaging_Platform extension)
- GetTransformationKappa (cli, bundled in Chest_Imaging_Platform extension)
- GetTransformationKappa2D (cli, bundled in Chest_Imaging_Platform extension)
- GetTransformationSimilarityMetric (cli, bundled in Chest_Imaging_Platform extension)
- GradientAnisotropicDiffusion (cli, built-in)
- GraphCutInteractiveSegmenter (loadable, bundled in GraphCutSegment extension)
- GraphCutsOptimization (cli, bundled in Chest_Imaging_Platform extension)
- GrayscaleFillHoleImageFilter (cli, built-in)
- GrayscaleGrindPeakImageFilter (cli, built-in)
- GrayscaleModelMaker (cli, built-in)
- Growing (cli, bundled in CMFreg extension)
- GyroGuide (scripted, bundled in GyroGuide extension)
- HeterogeneityCAD (scripted, bundled in OpenCAD extension)
- HistogramMatching (cli, built-in)
- IASEMImport (cli, bundled in IASEM extension)
- IASEMImportSeries (cli, bundled in IASEM extension)
- iGyne (scripted, bundled in iGyne extension)
- ImageLabelCombine (cli, built-in)
- IntensityDifferenceMetric (cli, bundled in ChangeTracker extension)
- IntensitySegmenter (cli, bundled in IntensitySegmenter extension)
- IslandRemoval (cli, built-in)
- Isodose (loadable, bundled in SlicerRT extension)
- itkimage2paramap (cli, bundled in DCMQI extension)
- itkimage2segimage (cli, bundled in DCMQI extension)
- KUtil (scripted, bundled in CarreraSlice extension)
- LabelAddition (cli, bundled in CMFreg extension)
- LabelExtraction (cli, bundled in CMFreg extension)
- LabelMapFromRegionAndTypePoints (cli, bundled in Chest_Imaging_Platform extension)
- LabelMapSmoothing (cli, built-in)
- LabelObjectStatistics (scripted, bundled in IASEM extension)
- LabelParticlesByChestRegionChestType (cli, bundled in Chest_Imaging_Platform extension)
- LabelStatistics (scripted, built-in)
- LandmarkRegistration (scripted, built-in)
- LAScarSegmenter (cli, bundled in LAScarSegmenter extension)
- LASegmentationWorkflow (scripted, bundled in Cardiac_MRI_Toolkit extension)
- LevelSetSegmentation (scripted, bundled in VMTK extension)
- MarginCalculator (scripted, bundled in MarginCalculator extension)
- Markups (loadable, built-in)
- MarkupsToModel (loadable, bundled in SlicerIGT extension)
- MaskCreation (cli, bundled in CMFreg extension)
- MaskOutLabelMapStructures (cli, bundled in Chest_Imaging_Platform extension)
- MaskScalarVolume (cli, built-in)
- MedianImageFilter (cli, built-in)
- MergeChestLabelMaps (cli, bundled in Chest_Imaging_Platform extension)
- MergeModels (cli, built-in)
- MergeParticleDataSets (cli, bundled in Chest_Imaging_Platform extension)
- MeshStatistics (scripted, bundled in MeshStatisticsExtension extension)
- MeshToLabelMap (cli, bundled in MeshToLabelMap extension)
- MetafileImporter (loadable, bundled in Sequences extension)
- ModelMaker (cli, built-in)
- ModelRegistration (scripted, bundled in SlicerIGT extension)
- Models (loadable, built-in)
- ModelToLabelMap (cli, built-in)
- ModelToModelDistance (cli, bundled in ModelToModelDistance extension)
- mpReview (scripted, bundled in mpReview extension)
- mpReviewPreprocessor (scripted, bundled in mpReview extension)
- MultiplyScalarVolumes (cli, built-in)
- MultiVolumeExplorer (loadable, built-in)
- MultiVolumeImporter (scripted, built-in)
- N4ITKBiasFieldCorrection (cli, built-in)
- NeedleFinder (scripted, bundled in NeedleFinder extension)
- NonGrowing (cli, bundled in CMFreg extension)
- OpenCV (loadable, bundled in SlicerOpenCV extension)
- OpenIGTLinkIF (loadable, built-in)
- OpenIGTLinkRemote (loadable, bundled in SlicerIGT extension)
- OrientScalarVolume (cli, built-in)
- paramap2itkimage (cli, bundled in DCMQI extension)
- ParticlesDisplay (loadable, bundled in Chest_Imaging_Platform extension)
- PathExplorer (loadable, bundled in SlicerIGT extension)
- PBNRR (cli, bundled in PBNRR extension)
- PerformMetricTest (cli, built-in)
- PerformMorphological (cli, bundled in Chest_Imaging_Platform extension)
- PerkEvaluator (loadable, bundled in PerkTutor extension)
- PerturbParticles (cli, bundled in Chest_Imaging_Platform extension)
- PETIndiC (scripted, bundled in PET-IndiC extension)
- PETLiverUptakeMeasurement (cli, bundled in PETLiverUptakeMeasurement extension)
- PETStandardUptakeValueComputation (cli, built-in)
- PETSUVImageMaker (cli, bundled in LongitudinalPETCT extension)
- PETTumorSegmentation (loadable, bundled in PETTumorSegmentation extension)
- Philips4dUsDicomPatcher (scripted, bundled in SlicerHeart extension)
- PickAndPaint (scripted, bundled in PickAndPaintExtension extension)
- PivotCalibration (loadable, bundled in SlicerIGT extension)
- PkModeling (cli, bundled in PkModeling extension)
- PlanarImage (loadable, bundled in SlicerRT extension)
- plastimatch_slicer_bspline (cli, bundled in SlicerRT extension)
- plastimatch_slicer_landwarp (cli, bundled in SlicerRT extension)
- PlastimatchPy (loadable, bundled in SlicerRT extension)
- PlmRegister (scripted, bundled in SlicerRT extension)
- PlusModelCatalogBrowser (scripted, bundled in SlicerIGT extension)
- PlusRemote (scripted, bundled in SlicerIGT extension)
- ProbeVolumeWithModel (cli, built-in)
- PythonMetricsCalculator (scripted, bundled in PerkTutor extension)
- Q3DC (scripted, bundled in Q3DC extension)
- QuadEdgeSurfaceMesher (cli, bundled in SlicerProstate extension)
- QualityControl (cli, bundled in Chest_Imaging_Platform extension)
- QuantitativeIndicesCLI (cli, bundled in PET-IndiC extension)
- QuantitativeIndicesTool (scripted, bundled in PET-IndiC extension)
- QuantitativeReporting (scripted, bundled in QuantitativeReporting extension)
- QuickTCGA (loadable, bundled in SlicerPathology extension)
- ReadDicomWriteTags (cli, bundled in Chest_Imaging_Platform extension)
- ReadNRRDsWriteVTK (cli, bundled in Chest_Imaging_Platform extension)
- ReadVidaWriteCIP (cli, bundled in Chest_Imaging_Platform extension)
- ReadVTKWriteNRRDs (cli, bundled in Chest_Imaging_Platform extension)
- ReadWriteImageData (cli, bundled in Chest_Imaging_Platform extension)
- ReadWriteRegionAndTypePoints (cli, bundled in Chest_Imaging_Platform extension)
- Reformat (loadable, built-in)
- RegionType (loadable, bundled in Chest_Imaging_Platform extension)
- RegionTypeLocationsToROIVolume (cli, bundled in Chest_Imaging_Platform extension)
- RegisterCT (cli, bundled in Chest_Imaging_Platform extension)
- RegisterLabelMaps (cli, bundled in Chest_Imaging_Platform extension)
- RegisterLungAtlas (cli, bundled in Chest_Imaging_Platform extension)
- RemapLabelMap (cli, bundled in Chest_Imaging_Platform extension)
- RemoveChestTypeFromLabelMapUsingParticles (cli, bundled in Chest_Imaging_Platform extension)
- RemoveParticlesFromParticlesDataSet (cli, bundled in Chest_Imaging_Platform extension)
- ResampleCT (cli, bundled in Chest_Imaging_Platform extension)
- ResampleDTIlogEuclidean (cli, bundled in ResampleDTIlogEuclidean extension)
- ResampleDTIVolume (cli, built-in)
- ResampleLabelMap (cli, bundled in Chest_Imaging_Platform extension)
- ResampleScalarVectorDWIVolume (cli, built-in)
- RescaleLabelMap (cli, bundled in Chest_Imaging_Platform extension)
- ResectionVolume (scripted, bundled in ResectionPlanner extension)
- ROBEXBrainExtraction (cli, bundled in ROBEXBrainExtraction extension)
- RobustStatisticsSegmenter (cli, built-in)
- SampleData (scripted, built-in)
- ScanConvertCurvilinearArray (cli, bundled in SlicerITKUltrasound extension)
- ScanConvertPhasedArray3D (cli, bundled in SlicerITKUltrasound extension)
- ScanConvertSliceSeries (cli, bundled in SlicerITKUltrasound extension)
- ScarVisualization (scripted, bundled in Cardiac_MRI_Toolkit extension)
- ScatteredTransform (cli, bundled in ScatteredTransform extension)
- SceneViews (loadable, built-in)
- ScreenCapture (scripted, built-in)
- SEG2NRRD (cli)
- segimage2itkimage (cli, bundled in DCMQI extension)
- Segmentations (loadable, built-in)
- SegmentationSmoothing (cli, bundled in SlicerProstate extension)
- SegmentCAD (scripted, bundled in OpenCAD extension)
- SegmentComparison (loadable, bundled in SlicerRT extension)
- SegmentEditor (scripted, built-in)
- SegmentEditorFastMarching (scripted, bundled in SegmentEditorExtraEffects extension)
- SegmentEditorFloodFilling (scripted, bundled in SegmentEditorExtraEffects extension)
- SegmentEditorWatershed (scripted, bundled in SegmentEditorExtraEffects extension)
- SegmentLungAirways (cli, bundled in Chest_Imaging_Platform extension)
- SegmentLungLobes (cli, bundled in Chest_Imaging_Platform extension)
- SegmentMorphology (loadable, bundled in SlicerRT extension)
- SegmentStatistics (scripted, built-in)
- SequenceBrowser (loadable, bundled in Sequences extension)
- Sequences (loadable, bundled in Sequences extension)
- ShapeQuantifier (scripted, bundled in ShapeQuantifier extension)
- ShapeQuantifierCore (scripted, bundled in ShapeQuantifier extension)
- ShortCutCore (loadable, bundled in SlicerPathology extension)
- SimpleFilters (scripted, built-in)
- SimpleRegionGrowingSegmentation (cli, built-in)
- SkullStripper (cli, bundled in SkullStripper extension)
- SlicerAstroDataProbe (scripted, bundled in SlicerAstro extension)
- SlicerPathology (scripted, bundled in SlicerPathology extension)
- SlicerToKiwiExporter (scripted, bundled in SlicerToKiwiExporter extension)
- SliceTracker (scripted, bundled in SliceTracker extension)
- SliceTrackerRegistration (scripted, bundled in SliceTracker extension)
- SliceTrackerZFrameRegistration (scripted, bundled in SliceTracker extension)
- SobolevSegmenter (cli, bundled in SobolevSegmenter extension)
- SpacingAwareCurvatureDiffusion (cli, bundled in IASEM extension)
- SpinalCurvatureMeasurement (scripted, bundled in Scoliosis extension)
- SplitLeftLungRightLung (cli, bundled in Chest_Imaging_Platform extension)
- SubjectHierarchy (loadable, built-in)
- SubtractScalarVolumes (cli, built-in)
- SurfaceRegistration (scripted, bundled in CMFreg extension)
- SurfaceToolbox (scripted, built-in)
- SUVFactorCalculator (cli, bundled in PETDICOMExtension extension)
- SwissSkullStripper (cli, bundled in SwissSkullStripper extension)
- SyntheticRTDose (scripted, bundled in MarginCalculator extension)
- T1Mapping (cli, bundled in T1Mapping extension)
- Tables (loadable, built-in)
- TCIABrowser (scripted, bundled in TCIABrowser extension)
- Terminologies (loadable, built-in)
- TextureModel (scripted, bundled in SlicerIGT extension)
- ThresholdScalarVolume (cli, built-in)
- tid1500reader (cli, bundled in DCMQI extension)
- tid1500writer (cli, bundled in DCMQI extension)
- TrackerStabilizer (loadable, bundled in TrackerStabilizer extension)
- TractographyDisplay (loadable, bundled in SlicerDMRI extension)
- TractographyInteractiveSeeding (loadable, bundled in SlicerDMRI extension)
- TractographyLabelMapSeeding (cli, bundled in SlicerDMRI extension)
- TransferRegionAndTypeIndicesToFromPoints (cli, bundled in Chest_Imaging_Platform extension)
- TransformFusion (loadable, bundled in SlicerIGT extension)
- TransformRecorder (loadable, bundled in PerkTutor extension)
- Transforms (loadable, built-in)
- UKFTractography (cli, bundled in UKFTractography extension)
- UltrasoundSnapshots (loadable, bundled in SlicerIGT extension)
- Units (loadable, built-in)
- ValveView (scripted, bundled in SlicerHeart extension)
- VBRAINSDemonWarp (cli, built-in)
- VectorToScalarVolume (scripted, built-in)
- VesselnessFiltering (scripted, bundled in VMTK extension)
- VffFileReader (loadable, bundled in SlicerRT extension)
- ViewControllers (loadable, built-in)
- Viewpoint (scripted, bundled in SlicerIGT extension)
- VirtualReality (loadable, bundled in SlicerVirtualReality extension)
- VolumeClipToLabel (scripted, bundled in SliceTracker extension)
- VolumeClipWithModel (scripted, bundled in VolumeClip extension)
- VolumeClipWithRoi (scripted, bundled in VolumeClip extension)
- VolumeRendering (loadable, built-in)
- VolumeResliceDriver (loadable, bundled in SlicerIGT extension)
- Volumes (loadable, built-in)
- VotingBinaryHoleFillingImageFilter (cli, built-in)
- VTK_to_DICOMTract (cli, bundled in SlicerDMRI extension)
- Wasp (scripted, bundled in Wasp extension)
- Watchdog (loadable, bundled in SlicerIGT extension)
- Welcome (loadable, built-in)
- WindowLevelEffect (scripted, bundled in WindowLevelEffect extension)
- WorkflowSegmentation (loadable, bundled in PerkTutor extension)
- XnatSlicer (scripted, bundled in XNATSlicer extension)
- ZFrameCalibration (cli, bundled in SliceTracker extension)
