Difference between revisions of "Documentation/Nightly/ModuleExtensionListing"
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* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Wizard] <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Wizard] <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Isolated Connected Filter] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Isolated Connected Filter] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| − | |||
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Inhomogeneity Correction] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Inhomogeneity Correction] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Axial Dilate] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Axial Dilate] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
* [[Documentation/Nightly/Modules/ScarVisualization|Scar Visualization]] <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | * [[Documentation/Nightly/Modules/ScarVisualization|Scar Visualization]] <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration] <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration] <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit LASegmentation Graph Cuts] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
<span id='Modules_by_category_Chest_Imaging_Platform'></span> | <span id='Modules_by_category_Chest_Imaging_Platform'></span> | ||
== Chest Imaging Platform == | == Chest Imaging Platform == | ||
| Line 231: | Line 231: | ||
* DICOMScalar Volume Plugin | * DICOMScalar Volume Plugin | ||
* [[Documentation/Nightly/Modules/DICOMRWVMPlugin|DICOMRWVMPlugin]] | * [[Documentation/Nightly/Modules/DICOMRWVMPlugin|DICOMRWVMPlugin]] | ||
| + | * Dicom Rt Import Export Plugin | ||
* Multi Volume Importer Plugin | * Multi Volume Importer Plugin | ||
| − | |||
<span id='Modules_by_category_Developer_Tools_Editor_Extensions'></span> | <span id='Modules_by_category_Developer_Tools_Editor_Extensions'></span> | ||
=== Editor Extensions === | === Editor Extensions === | ||
| Line 330: | Line 330: | ||
* [https://github.com/SlicerIGT/LumpNav Viewpoint] <small>(scripted, bundled in [https://github.com/SlicerIGT/LumpNav Lump Nav] extension)</small> | * [https://github.com/SlicerIGT/LumpNav Viewpoint] <small>(scripted, bundled in [https://github.com/SlicerIGT/LumpNav Lump Nav] extension)</small> | ||
* [[Documentation/Nightly/Modules/CollectFiducials|Collect Fiducials]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small> | * [[Documentation/Nightly/Modules/CollectFiducials|Collect Fiducials]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small> | ||
| − | |||
* [https://github.com/SlicerIGT/LumpNav Lump Nav] <small>(scripted, bundled in [https://github.com/SlicerIGT/LumpNav Lump Nav] extension)</small> | * [https://github.com/SlicerIGT/LumpNav Lump Nav] <small>(scripted, bundled in [https://github.com/SlicerIGT/LumpNav Lump Nav] extension)</small> | ||
* [[Documentation/Nightly/Extensions/SlicerIGT|Transform Fusion]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small> | * [[Documentation/Nightly/Extensions/SlicerIGT|Transform Fusion]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small> | ||
| Line 351: | Line 350: | ||
* [[Documentation/Nightly/Modules/OpenIGTLinkIF|Open IGTLink IF]] <small>(loadable, built-in)</small> | * [[Documentation/Nightly/Modules/OpenIGTLinkIF|Open IGTLink IF]] <small>(loadable, built-in)</small> | ||
* [[Documentation/Nightly/Extensions/iGyne|i Gyne]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/iGyne|i Gyne]] extension)</small> | * [[Documentation/Nightly/Extensions/iGyne|i Gyne]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/iGyne|i Gyne]] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/PlusRemote|Plus Remote]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small> | ||
* [[Documentation/Nightly/Extensions/SlicerIGT|Fiducials To Model Registration]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small> | * [[Documentation/Nightly/Extensions/SlicerIGT|Fiducials To Model Registration]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small> | ||
* [[Documentation/Nightly/Extensions/SlicerIGT|Markups To Model]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small> | * [[Documentation/Nightly/Extensions/SlicerIGT|Markups To Model]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small> | ||
| Line 446: | Line 446: | ||
<span id='Modules_by_category_Quantification'></span> | <span id='Modules_by_category_Quantification'></span> | ||
== Quantification == | == Quantification == | ||
| + | * [http://slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/DSC_MRI_Analysis DSCMRIAnalysis] <small>(cli, bundled in [http://slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/DSC_MRI_Analysis DSCMRIAnalysis] extension)</small> | ||
* [[Documentation/Nightly/Extensions/PET-IndiC|PETIndi C]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PET-IndiC|PET-Indi C]] extension)</small> | * [[Documentation/Nightly/Extensions/PET-IndiC|PETIndi C]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PET-IndiC|PET-Indi C]] extension)</small> | ||
* [[Documentation/Nightly/Modules/HeterogeneityCAD|Heterogeneity CAD]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/OpenCAD|Open CAD]] extension)</small> | * [[Documentation/Nightly/Modules/HeterogeneityCAD|Heterogeneity CAD]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/OpenCAD|Open CAD]] extension)</small> | ||
| Line 542: | Line 543: | ||
<span id='Modules_by_category_CMF_Registration_Voxelbase_Registration'></span> | <span id='Modules_by_category_CMF_Registration_Voxelbase_Registration'></span> | ||
==== Voxelbase Registration ==== | ==== Voxelbase Registration ==== | ||
| + | * [[Documentation/Nightly/Modules/NonGrowing|Non Growing]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small> | ||
* [[Documentation/Nightly/Modules/Growing|Growing]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small> | * [[Documentation/Nightly/Modules/Growing|Growing]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small> | ||
| − | |||
* [[Documentation/Nightly/Modules/MaskCreation|Mask Creation]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small> | * [[Documentation/Nightly/Modules/MaskCreation|Mask Creation]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small> | ||
<span id='Modules_by_category_Slicelets'></span> | <span id='Modules_by_category_Slicelets'></span> | ||
| Line 638: | Line 639: | ||
* [[Documentation/Nightly/Extensions/LongitudinalPETCT|Longitudinal PETCT]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/LongitudinalPETCT|Longitudinal PETCT]] extension)</small> | * [[Documentation/Nightly/Extensions/LongitudinalPETCT|Longitudinal PETCT]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/LongitudinalPETCT|Longitudinal PETCT]] extension)</small> | ||
= Modules by name = | = Modules by name = | ||
| − | + | 321 modules: | |
* [http://www.nitrc.org/projects/abc ABC] <small>(cli, bundled in [http://www.nitrc.org/projects/abc ABC] extension)</small> | * [http://www.nitrc.org/projects/abc ABC] <small>(cli, bundled in [http://www.nitrc.org/projects/abc ABC] extension)</small> | ||
* [[Documentation/Nightly/Modules/ACPCTransform|ACPCTransform]] <small>(cli, built-in)</small> | * [[Documentation/Nightly/Modules/ACPCTransform|ACPCTransform]] <small>(cli, built-in)</small> | ||
| Line 725: | Line 726: | ||
* [[Documentation/Nightly/Modules/Downsize|Downsize]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small> | * [[Documentation/Nightly/Modules/Downsize|Downsize]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small> | ||
* [[Documentation/Nightly/Modules/dPetBrainQuantification|d Pet Brain Quantification]] <small>(scripted, bundled in [http://gti-fing.github.io/SlicerPetSpectAnalysis Pet Spect Analysis] extension)</small> | * [[Documentation/Nightly/Modules/dPetBrainQuantification|d Pet Brain Quantification]] <small>(scripted, bundled in [http://gti-fing.github.io/SlicerPetSpectAnalysis Pet Spect Analysis] extension)</small> | ||
| + | * [http://slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/DSC_MRI_Analysis DSCMRIAnalysis] <small>(cli, bundled in [http://slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/DSC_MRI_Analysis DSCMRIAnalysis] extension)</small> | ||
* [[Documentation/Nightly/Extensions/SlicerRT|Dvh Comparison]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small> | * [[Documentation/Nightly/Extensions/SlicerRT|Dvh Comparison]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small> | ||
* DWIConvert <small>(cli, built-in)</small> | * DWIConvert <small>(cli, built-in)</small> | ||
Revision as of 20:51, 8 January 2016
Home < Documentation < Nightly < ModuleExtensionListing
- Modules by category
- Modules by name
- Modules by contributing organization
- Modules by contributing individual
- Modules by type
- Modules by extension
- Extensions by category
- Extensions by name
- Extensions by contributing organization
- Extensions by contributing individual
Modules by category
38 categories:
- Cardiac
- Cardiac MRI Toolkit
- Chest Imaging Platform
- CIP
- Converters
- Developer Tools
- Diffusion
- Editor Effects
- Editor Effect
- Endoscopy
- Examples
- Exporter
- Filter
- Filtering
- IGT
- Informatics
- Legacy
- Margin Calculator
- Mesh Generation
- Mesh Generation
- Microscopy
- Multi Volume Support
- Perk Tutor
- Plastimatch
- Quantification
- Radiotherapy
- Registration
- Segmentation
- Sequences
- Shape Analysis
- Slicelets
- Surface Models
- Test Cases
- Testing
- Utilities
- Vascular Modeling Toolkit
- Wizards
- Work in Progress
Cardiac
- Philips4d Us Dicom Patcher (scripted, bundled in Slicer Heart extension)
- Valve View (scripted, bundled in Slicer Heart extension)
Cardiac MRI Toolkit
- CMRToolkit PVAntrum Cut (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Boolean REMOVEFilter (cli, bundled in Cardiac MRI Toolkit extension)
- LASegmentation Workflow (scripted, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Registration BRAINSFit (scripted, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Automatic Left Atrial Scar (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Connected Threshold Filter (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Wizard (scripted, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Isolated Connected Filter (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Inhomogeneity Correction (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Axial Dilate (cli, bundled in Cardiac MRI Toolkit extension)
- Scar Visualization (scripted, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Registration (scripted, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit LASegmentation Graph Cuts (cli, bundled in Cardiac MRI Toolkit extension)
Chest Imaging Platform
- Interactive Lobe Segmentation (scripted, bundled in Chest Imaging Platform extension)
- Airway Inspector (loadable, bundled in Chest Imaging Platform extension)
Modules
- CIP MIPViewer (scripted, bundled in Chest Imaging Platform extension)
- CIP Body Composition (scripted, bundled in Chest Imaging Platform extension)
- CIP Trachea Stent Planning (scripted, bundled in Chest Imaging Platform extension)
- CIP Lesion Model (scripted, bundled in Chest Imaging Platform extension)
- CIP PAARatio (scripted, bundled in Chest Imaging Platform extension)
- CIP Parenchyma Subtype Training (scripted, bundled in Chest Imaging Platform extension)
Toolkit
Particles
- Scour Particle Data (cli, bundled in Chest Imaging Platform extension)
- Extract Particles From Chest Region Chest Type (cli, bundled in Chest Imaging Platform extension)
- Filter Vessel Particle Data (cli, bundled in Chest Imaging Platform extension)
- Remove Particles From Particles Data Set (cli, bundled in Chest Imaging Platform extension)
- Merge Particle Data Sets (cli, bundled in Chest Imaging Platform extension)
- Perturb Particles (cli, bundled in Chest Imaging Platform extension)
- Filter Airway Particle Data (cli, bundled in Chest Imaging Platform extension)
- Transfer Field Data To From Point Data (cli, bundled in Chest Imaging Platform extension)
- Fit Lobe Surface Models To Particle Data (cli, bundled in Chest Imaging Platform extension)
- Classify Fissure Particles (cli, bundled in Chest Imaging Platform extension)
- Generate Stenciled Label Map From Particles (cli, bundled in Chest Imaging Platform extension)
- Filter Fissure Particle Data (cli, bundled in Chest Imaging Platform extension)
Processing
- Resample Label Map (cli, bundled in Chest Imaging Platform extension)
- Rescale Label Map (cli, bundled in Chest Imaging Platform extension)
- Generate Median Filtered Image (cli, bundled in Chest Imaging Platform extension)
- Label Map From Region And Type Points (cli, bundled in Chest Imaging Platform extension)
- Crop Lung (cli, bundled in Chest Imaging Platform extension)
- Generate NLMFiltered Image (cli, bundled in Chest Imaging Platform extension)
- Remove Chest Type From Label Map Using Particles (cli, bundled in Chest Imaging Platform extension)
- Generate Atlas Convex Hull (cli, bundled in Chest Imaging Platform extension)
- Compute Fissure Feature Vectors (cli, bundled in Chest Imaging Platform extension)
- Generate Lobe Surface Models (cli, bundled in Chest Imaging Platform extension)
- Filter Connected Components (cli, bundled in Chest Imaging Platform extension)
- Extract Chest Label Map (cli, bundled in Chest Imaging Platform extension)
- Perform Morphological (cli, bundled in Chest Imaging Platform extension)
- Extract Fissure Boundary From Lobe Map (cli, bundled in Chest Imaging Platform extension)
- Enhance Fissures In Image (cli, bundled in Chest Imaging Platform extension)
- Remap Label Map (cli, bundled in Chest Imaging Platform extension)
- Generate Distance Map From Label Map (cli, bundled in Chest Imaging Platform extension)
- Resample CT (cli, bundled in Chest Imaging Platform extension)
- Compute Feature Strength (cli, bundled in Chest Imaging Platform extension)
- Compute Distance Map (cli, bundled in Chest Imaging Platform extension)
- Quality Control (cli, bundled in Chest Imaging Platform extension)
- Generate Image Sub Volumes (cli, bundled in Chest Imaging Platform extension)
Quantification
- Evaluate Lung Lobe Segmentation Results (cli, bundled in Chest Imaging Platform extension)
- Get Transformation Kappa (cli, bundled in Chest Imaging Platform extension)
- Read Write Image Data (cli, bundled in Chest Imaging Platform extension)
- Compute Intensity Statistics (cli, bundled in Chest Imaging Platform extension)
- Compute Cross Sectional Area (cli, bundled in Chest Imaging Platform extension)
- Label Particles By Chest Region Chest Type (cli, bundled in Chest Imaging Platform extension)
- Get Transformation Similarity Metric (cli, bundled in Chest Imaging Platform extension)
- Generate Region Histograms And Parenchyma Phenotypes (cli, bundled in Chest Imaging Platform extension)
- Get Transformation Kappa2D (cli, bundled in Chest Imaging Platform extension)
Registration
- Register Lung Atlas (cli, bundled in Chest Imaging Platform extension)
- Register Label Maps (cli, bundled in Chest Imaging Platform extension)
- Register CT (cli, bundled in Chest Imaging Platform extension)
Segmentation
- Generate Otsu Lung Cast (cli, bundled in Chest Imaging Platform extension)
- Segment Lung Lobes (cli, bundled in Chest Imaging Platform extension)
- Generate Partial Lung Label Map (cli, bundled in Chest Imaging Platform extension)
- Split Left Lung Right Lung (cli, bundled in Chest Imaging Platform extension)
- Generate Binary Thinning3D (cli, bundled in Chest Imaging Platform extension)
- Generate Lesion Segmentation (cli, bundled in Chest Imaging Platform extension)
Utils
- Convert Dicom (cli, bundled in Chest Imaging Platform extension)
- Region Type Locations To ROIVolume (cli, bundled in Chest Imaging Platform extension)
- Read VTKWrite NRRDs (cli, bundled in Chest Imaging Platform extension)
- Generate Overlay Images (cli, bundled in Chest Imaging Platform extension)
- Execute System Command (cli, bundled in Chest Imaging Platform extension)
- Get Structures In Label Map (cli, bundled in Chest Imaging Platform extension)
- Find Patch Match (cli, bundled in Chest Imaging Platform extension)
- Convert Chest Region Chest Type To Label Map Value (cli, bundled in Chest Imaging Platform extension)
- Mask Out Label Map Structures (cli, bundled in Chest Imaging Platform extension)
- Read NRRDs Write VTK (cli, bundled in Chest Imaging Platform extension)
- Convert Label Map Value To Chest Region Chest Type (cli, bundled in Chest Imaging Platform extension)
- Read Write Region And Type Points (cli, bundled in Chest Imaging Platform extension)
- Merge Chest Label Maps (cli, bundled in Chest Imaging Platform extension)
- Read Vida Write CIP (cli, bundled in Chest Imaging Platform extension)
- Read Dicom Write Tags (cli, bundled in Chest Imaging Platform extension)
- Transfer Region And Type Indices To From Points (cli, bundled in Chest Imaging Platform extension)
CIP
- CIP Common (scripted, bundled in Chest Imaging Platform extension)
Converters
- Quad Edge Surface Mesher (cli, bundled in Slicer Prostate extension)
- Crop Volume (loadable, built-in)
- Orient Scalar Volume (cli, built-in)
- Convert VTK (cli, bundled in UKFTractography extension)
- Vector To Scalar Volume (scripted, built-in)
- Create DICOMSeries (cli, built-in)
- Particles Display (loadable, bundled in Chest Imaging Platform extension)
- Region Type (loadable, bundled in Chest Imaging Platform extension)
Developer Tools
- Cameras (loadable, built-in)
- Execution Model Tour (cli, built-in)
- Node Modified Statistics (scripted, bundled in Debugging Tools extension)
- Py Dev Remote Debug (scripted, bundled in Debugging Tools extension)
- Extension Wizard (scripted, built-in)
- Image Maker (cli, bundled in Image Maker extension)
- Extension Stats (scripted, bundled in Developer Tools For Extensions extension)
- Developer Tools For Extensions (scripted, bundled in Developer Tools For Extensions extension)
- Event Broker
- Double Arrays (loadable, built-in)
DICOM Plugins
- Dicom Ultrasound Plugin
- DICOMSegmentation Plugin
- DICOMSlicer Data Bundle Plugin
- DICOMPETSUVPlugin
- DICOMDiffusion Volume Plugin
- DICOMLongitudinal PETCTPlugin
- Dicom Sro Import Plugin
- DICOMScalar Volume Plugin
- DICOMRWVMPlugin
- Dicom Rt Import Export Plugin
- Multi Volume Importer Plugin
Editor Extensions
- Fast Grow Cut Effect (scripted, bundled in Fast Grow Cut Effect extension)
- Carrera Slice Effect (scripted, bundled in Carrera Slice extension)
- PETTumor Segmentation Effect (scripted, bundled in PETTumor Segmentation extension)
- Binary Watershed Effect (scripted, bundled in IASEM extension)
- Double Threshold Effect (scripted, bundled in IASEM extension)
Matlab
- Matlab Module Generator (loadable, bundled in Matlab Bridge extension)
- Matlab Commander (cli, bundled in Matlab Bridge extension)
Diffusion
- Tractography Display (loadable, built-in)
- DICOM2Full Brain Tractography (scripted, built-in)
Diffusion Data Conversion
- DWIConvert (cli, built-in)
Diffusion Tensor Images
- Tractography Interactive Seeding (loadable, built-in)
- Tractography Label Map Seeding (cli, built-in)
- Resample DTIlog Euclidean (cli, bundled in Resample DTIlog Euclidean extension)
- Diffusion Tensor Scalar Measurements (cli, built-in)
- Resample DTIVolume (cli, built-in)
Diffusion Weighted Images
- DWIRician LMMSEFilter (cli, built-in)
- DWIJoint Rician LMMSEFilter (cli, built-in)
- Finsler Backtracing (cli, bundled in Finsler Tractography extension)
- Finsler Tractography (cli, bundled in Finsler Tractography extension)
- BRAINSDWICleanup (cli, built-in)
- DWITo DTIEstimation (cli, built-in)
- Diffusion Weighted Volume Masking (cli, built-in)
- Resample Scalar Vector DWIVolume (cli, built-in)
FiberAnalysis
- Fiber Post Process (cli, built-in)
Tractography
- Fiber Bundle Label Select (cli, built-in)
- Fiber Bundle To Label Map (scripted, built-in)
- UKFTractography (cli, bundled in UKFTractography extension)
- Fiber Tract Measurements (cli, built-in)
Editor Effects
- Window Level Effect (scripted, bundled in Window Level Effect extension)
EditorEffect
- PETTumor Segmentation (loadable, bundled in PETTumor Segmentation extension)
Endoscopy
- Endoscopy (scripted, built-in)
Examples
- Fast Grow Cut (loadable, bundled in Fast Grow Cut Effect extension)
- Fast Grow Cut Segmenter (loadable, bundled in Carrera Slice extension)
- Carrera Slice (loadable, bundled in Carrera Slice extension)
- Graph Cut Interactive Segmenter (loadable, bundled in Graph Cut Segment extension)
Exporter
- Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)
Filter
- Island Removal (cli, built-in)
Filtering
- Segmentation Smoothing (cli, bundled in Slicer Prostate extension)
- N4ITKBias Field Correction (cli, built-in)
- Image Label Combine (cli, built-in)
- Voting Binary Hole Filling Image Filter (cli, built-in)
- Checker Board Filter (cli, built-in)
- Extract Skeleton (cli, built-in)
- Simple Filters (scripted, built-in)
- Threshold Scalar Volume (cli, built-in)
- Histogram Matching (cli, built-in)
Arithmetic
- Multiply Scalar Volumes (cli, built-in)
- Add Scalar Volumes (cli, built-in)
- Mask Scalar Volume (cli, built-in)
- Subtract Scalar Volumes (cli, built-in)
- Cast Scalar Volume (cli, built-in)
Denoising
- Curvature Anisotropic Diffusion (cli, built-in)
- Gradient Anisotropic Diffusion (cli, built-in)
- Median Image Filter (cli, built-in)
- Gaussian Blur Image Filter (cli, built-in)
Morphology
- Grayscale Fill Hole Image Filter (cli, built-in)
- Grayscale Grind Peak Image Filter (cli, built-in)
IGT
- Viewpoint (scripted, bundled in Lump Nav extension)
- Collect Fiducials (loadable, bundled in Slicer IGT extension)
- Lump Nav (scripted, bundled in Lump Nav extension)
- Transform Fusion (loadable, bundled in Slicer IGT extension)
- Gyro Guide (scripted, bundled in Gyro Guide extension)
- Light Weight Robot IGT (loadable, bundled in Light Weight Robot IGT extension)
- Create Models (loadable, bundled in Slicer IGT extension)
- Needle Finder (scripted, bundled in Needle Finder extension)
- Tracker Stabilizer (loadable, bundled in Tracker Stabilizer extension)
- Path Explorer (loadable, bundled in Slicer IGT extension)
- Ultrasound Snapshots (loadable, bundled in Slicer IGT extension)
- Breach Warning Light (scripted, bundled in Lump Nav extension)
- Breach Warning (loadable, bundled in Slicer IGT extension)
- Model Registration (scripted, bundled in Slicer IGT extension)
- Pivot Calibration (loadable, bundled in Slicer IGT extension)
- Volume Reslice Driver (loadable, bundled in Slicer IGT extension)
- Fiducial Registration Wizard (loadable, bundled in Slicer IGT extension)
- Open IGTLink Remote (loadable, bundled in Slicer IGT extension)
- Watchdog (loadable, bundled in Slicer IGT extension)
- Corner Annotation (scripted, bundled in Corner Annotation extension)
- Open IGTLink IF (loadable, built-in)
- i Gyne (scripted, bundled in i Gyne extension)
- Plus Remote (scripted, bundled in Slicer IGT extension)
- Fiducials To Model Registration (scripted, bundled in Slicer IGT extension)
- Markups To Model (loadable, bundled in Slicer IGT extension)
Informatics
- mp Review Preprocessor (scripted, bundled in mp Review extension)
- Tables (loadable, built-in)
- SEG2NRRD (cli, bundled in Reporting extension)
- TCIABrowser (scripted, bundled in TCIABrowser extension)
- mp Review (scripted, bundled in mp Review extension)
- Data (loadable, built-in)
- Units (loadable, built-in)
- DICOM (scripted, built-in)
- Sample Data (scripted, built-in)
- Colors (loadable, built-in)
- Curve Maker (scripted, bundled in Curve Maker extension)
- Annotations (loadable, built-in)
- Markups (loadable, built-in)
- Subject Hierarchy (loadable, built-in)
Converters
- Encode SEG (cli, bundled in Reporting extension)
Legacy
Converters
- BSpline To Deformation Field (cli, built-in)
Diffusion
Denoising
- DWIUnbiased Non Local Means Filter (cli, built-in)
Diffusion Data Conversion
- DTIexport (cli, built-in)
- DTIimport (cli, built-in)
Filtering
- Otsu Threshold Image Filter (cli, built-in)
- Resample Scalar Volume (cli, built-in)
Registration
- Test Grid Transform Registration (cli, built-in)
- Expert Automated Registration (cli, built-in)
Work in Progress
Diffusion Tensor
Test
- Diffusion Tensor Test (cli, built-in)
Margin Calculator
- Margin Calculator (scripted, bundled in Margin Calculator extension)
- Dose Morphology (loadable, bundled in Margin Calculator extension)
- Dose Population Histogram (loadable, bundled in Margin Calculator extension)
- Motion Simulator (loadable, bundled in Margin Calculator extension)
- Synthetic RTDose (scripted, bundled in Margin Calculator extension)
- Motion Simulator Double Array (loadable, bundled in Margin Calculator extension)
Mesh Generation
- Cleaver CLI (cli, bundled in Cleaver Extension extension)
MeshGeneration
- Body Centric Cubic Mesh (cli, bundled in CBC 3D I2MConversion extension)
- Mesh Compression (cli, bundled in CBC 3D I2MConversion extension)
Microscopy
- IASEMImport Series (cli, bundled in IASEM extension)
- IASEMImport (cli, bundled in IASEM extension)
- Bin Shrink (cli, bundled in IASEM extension)
- Label Object Statistics (scripted, bundled in IASEM extension)
- Spacing Aware Curvature Diffusion (cli, bundled in IASEM extension)
MultiVolume Support
- Multi Volume Importer (scripted, built-in)
- Multi Volume Explorer (loadable, built-in)
Perk Tutor
- Python Metrics Calculator (scripted, bundled in Perk Tutor extension)
- Transform Recorder (loadable, bundled in Perk Tutor extension)
- Perk Evaluator (loadable, bundled in Perk Tutor extension)
- Workflow Segmentation (loadable, bundled in Perk Tutor extension)
Plastimatch
- Dicom Sro Export (scripted, bundled in Slicer RT extension)
- Plm Register (scripted, bundled in Slicer RT extension)
Registration
- plastimatch slicer bspline (cli, bundled in Slicer RT extension)
- plastimatch slicer landwarp (cli, bundled in Slicer RT extension)
Utilities
- Plastimatch Py (loadable, bundled in Slicer RT extension)
Quantification
- DSCMRIAnalysis (cli, bundled in DSCMRIAnalysis extension)
- PETIndi C (scripted, bundled in PET-Indi C extension)
- Heterogeneity CAD (scripted, bundled in Open CAD extension)
- Quantitative Indices CLI (cli, bundled in PET-Indi C extension)
- PETStandard Uptake Value Computation (cli, built-in)
- SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
- Spinal Curvature Measurement (scripted, bundled in Scoliosis extension)
- Quantitative Indices Tool (scripted, bundled in PET-Indi C extension)
- Label Statistics (scripted, built-in)
- DWModeling (cli, bundled in Slicer Prostate extension)
- BRAINSLabel Stats (cli, built-in)
- Pk Modeling (cli, bundled in Pk Modeling extension)
- PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
- Data Probe (scripted, built-in)
- T1Mapping (cli, bundled in T1Mapping extension)
- d Pet Brain Quantification (scripted, bundled in Pet Spect Analysis extension)
- Dice Computation (loadable, bundled in Dice Computation extension)
ChangeQuantification
- Intensity Difference Metric (cli, bundled in Change Tracker extension)
Radiotherapy
- Beams (loadable, bundled in Slicer RT extension)
- Dvh Comparison (scripted, bundled in Slicer RT extension)
- Isodose (loadable, bundled in Slicer RT extension)
- Dose Volume Histogram (loadable, bundled in Slicer RT extension)
- Dicom Rt Import Export (loadable, bundled in Slicer RT extension)
- Dose Accumulation (loadable, bundled in Slicer RT extension)
- Segment Comparison (loadable, bundled in Slicer RT extension)
- Planar Image (loadable, bundled in Slicer RT extension)
- Segment Morphology (loadable, bundled in Slicer RT extension)
- Dose Comparison (loadable, bundled in Slicer RT extension)
- Dicom Sro Import (loadable, bundled in Slicer RT extension)
Registration
- Transforms (loadable, built-in)
- BRAINSResize (cli, built-in)
- Perform Metric Test (cli, built-in)
- Landmark Registration (scripted, built-in)
- PBNRR (cli, bundled in PBNRR extension)
- BRAINSResample (cli, built-in)
- BRAINSFit (cli, built-in)
Label Registration
- Distance Map Based Registration (scripted, bundled in Slicer Prostate extension)
Specialized
- ACPCTransform (cli, built-in)
- Fiducial Registration (cli, built-in)
- BRAINSDemon Warp (cli, built-in)
- Reformat (loadable, built-in)
- VBRAINSDemon Warp (cli, built-in)
Segmentation
- EMSegment Quick (loadable, built-in)
- Volume Clip With Model (scripted, bundled in Volume Clip extension)
- ABC (cli, bundled in ABC extension)
- Airway Segmentation CLI (cli, bundled in Airway Segmentation extension)
- LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
- Airway Segmentation (scripted, bundled in Airway Segmentation extension)
- Skull Stripper (cli, bundled in Skull Stripper extension)
- Volume Clip With Roi (scripted, bundled in Volume Clip extension)
- Segment CAD (scripted, bundled in Open CAD extension)
- Swiss Skull Stripper (cli, bundled in Swiss Skull Stripper extension)
- Wasp (scripted, bundled in Wasp extension)
- Editor (scripted, built-in)
- Simple Region Growing Segmentation (cli, built-in)
- EMSegment (loadable, built-in)
- Intensity Segmenter (cli, bundled in Intensity Segmenter extension)
Specialized
- BRAINSROIAuto (cli, built-in)
- Robust Statistics Segmenter (cli, built-in)
- EMSegment Command Line (cli, built-in)
Sequences
- Sequences (loadable, bundled in Sequences extension)
- Sequence Browser (loadable, bundled in Sequences extension)
- Metafile Importer (loadable, bundled in Sequences extension)
Shape Analysis
- Q3DC (scripted, bundled in Q3DC extension)
- Mesh Statistics (scripted, bundled in Mesh Statistics Extension extension)
- Easy Clip (scripted, bundled in Easy Clip extension)
- Mesh To Label Map (cli, bundled in Mesh To Label Map extension)
- Model To Model Distance (cli, bundled in Model To Model Distance extension)
- Angle Planes (scripted, bundled in Angle Planes Extension extension)
- Pick And Paint (scripted, bundled in Pick And Paint Extension extension)
CMF Registration
- Apply Matrix (cli, bundled in CMFreg extension)
- Label Addition (cli, bundled in CMFreg extension)
- Downsize (cli, bundled in CMFreg extension)
- Surface Registration (scripted, bundled in CMFreg extension)
- Label Extraction (cli, bundled in CMFreg extension)
Voxelbase Registration
- Non Growing (cli, bundled in CMFreg extension)
- Growing (cli, bundled in CMFreg extension)
- Mask Creation (cli, bundled in CMFreg extension)
Slicelets
- Gel Dosimetry Analysis (scripted, bundled in Gel Dosimetry Analysis extension)
- Gel Dosimetry Analysis Algo (loadable, bundled in Gel Dosimetry Analysis extension)
Surface Models
- Surface Toolbox (scripted, built-in)
- Grayscale Model Maker (cli, built-in)
- Model Maker (cli, built-in)
- Model To Label Map (cli, built-in)
- Merge Models (cli, built-in)
- Label Map Smoothing (cli, built-in)
- Probe Volume With Model (cli, built-in)
TestCases
- SEGExporter Self Test
Testing
- CLI4Test
- Threshold Threading Test
- Scoliosis Monitoring (scripted, bundled in Scoliosis extension)
- Slicer MRBSave Restore Check Paths Test
- CLIROITest (cli, built-in)
- Performance Tests
- Slicer MRBMultiple Save Restore Test
- Slicer MRBTest
- SEGExporter Self Test
- Self Tests
- Slicer MRBMultiple Save Restore Loop Test
IGT Tests
- Breach Warning Self Test
- Watchdog Self Test
SlicerRT Tests
- IGRTWorkflow Self Test
- Dicom Rt Import Self Test
- Batch Structure Set Conversion (scripted, bundled in Slicer RT extension)
TestCases
- Atlas Tests
- Add Storable Data After Scene View Test
- test tractography display
- RSNAQuant Tutorial
- Neurosurgical Planning Tutorial Markups Self Test
- Change Tracker Self Test
- Fiducial Layout Switch Bug1914
- Graph Cut Segment Self Test
- Charting (scripted, built-in)
- Cardiac Agatston Measures (scripted, bundled in Cardiac Agatston Measures extension)
- fiber visibility crash2438
- RSNAVis Tutorial
- JRC2013Vis
- Add Many Markups Fiducial Test
- Slicer4Minute (scripted, built-in)
- Crop Volume Self Test
- Slice Link Logic (scripted, built-in)
- Volume Rendering Scene Close (scripted, built-in)
- slicer Close Crash Bug2590
- Tables Self Test
- Markups In Views Self Test
- Two CLIs In Parallel Test
- Subject Hierarchy Core Plugins Self Test
- Subject Hierarchy Generic Self Test
- Scene Performance (scripted, built-in)
- Markups In Compare Viewers Self Test
- scene Import2428
- RSNA2012Prostate Demo
- DTINot Reproducible Issue3977
- Two CLIs In ARow Test
- Colors Scalar Bar Self Test
- View Controllers Slice Interpolation Bug1926
Utilities
- Data Store (loadable, built-in)
- BRAINSStrip Rotation (cli, built-in)
- EMSegment Transform To New Format (cli, built-in)
BRAINS
- BRAINSTransform Convert (cli, built-in)
Vascular Modeling Toolkit
- Centerline Computation (scripted, bundled in VMTK extension)
- Vesselness Filtering (scripted, bundled in VMTK extension)
- Level Set Segmentation (scripted, bundled in VMTK extension)
Wizards
- Compare Volumes (scripted, built-in)
- Change Tracker (scripted, bundled in Change Tracker extension)
Work in Progress
- Longitudinal PETCT (loadable, bundled in Longitudinal PETCT extension)
Modules by name
321 modules:
- ABC (cli, bundled in ABC extension)
- ACPCTransform (cli, built-in)
- Add Scalar Volumes (cli, built-in)
- Airway Inspector (loadable, bundled in Chest Imaging Platform extension)
- Airway Segmentation (scripted, bundled in Airway Segmentation extension)
- Airway Segmentation CLI (cli, bundled in Airway Segmentation extension)
- Angle Planes (scripted, bundled in Angle Planes Extension extension)
- Annotations (loadable, built-in)
- Apply Matrix (cli, bundled in CMFreg extension)
- Beams (loadable, bundled in Slicer RT extension)
- Bin Shrink (cli, bundled in IASEM extension)
- Body Centric Cubic Mesh (cli, bundled in CBC 3D I2MConversion extension)
- BRAINSDemon Warp (cli, built-in)
- BRAINSDWICleanup (cli, built-in)
- BRAINSFit (cli, built-in)
- BRAINSLabel Stats (cli, built-in)
- BRAINSResample (cli, built-in)
- BRAINSResize (cli, built-in)
- BRAINSROIAuto (cli, built-in)
- BRAINSStrip Rotation (cli, built-in)
- BRAINSTransform Convert (cli, built-in)
- Breach Warning (loadable, bundled in Slicer IGT extension)
- Breach Warning Light (scripted, bundled in Lump Nav extension)
- Carrera Slice (loadable, bundled in Carrera Slice extension)
- Cast Scalar Volume (cli, built-in)
- Centerline Computation (scripted, bundled in VMTK extension)
- Change Tracker (scripted, bundled in Change Tracker extension)
- Checker Board Filter (cli, built-in)
- CIP Body Composition (scripted, bundled in Chest Imaging Platform extension)
- CIP Common (scripted, bundled in Chest Imaging Platform extension)
- CIP Lesion Model (scripted, bundled in Chest Imaging Platform extension)
- CIP MIPViewer (scripted, bundled in Chest Imaging Platform extension)
- CIP PAARatio (scripted, bundled in Chest Imaging Platform extension)
- CIP Parenchyma Subtype Training (scripted, bundled in Chest Imaging Platform extension)
- CIP Trachea Stent Planning (scripted, bundled in Chest Imaging Platform extension)
- Classify Fissure Particles (cli, bundled in Chest Imaging Platform extension)
- Cleaver CLI (cli, bundled in Cleaver Extension extension)
- CMRToolkit Automatic Left Atrial Scar (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Axial Dilate (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Boolean REMOVEFilter (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Connected Threshold Filter (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Inhomogeneity Correction (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Isolated Connected Filter (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit LASegmentation Graph Cuts (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit PVAntrum Cut (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Registration (scripted, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Registration BRAINSFit (scripted, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Wizard (scripted, bundled in Cardiac MRI Toolkit extension)
- Collect Fiducials (loadable, bundled in Slicer IGT extension)
- Colors (loadable, built-in)
- Compare Volumes (scripted, built-in)
- Compute Cross Sectional Area (cli, bundled in Chest Imaging Platform extension)
- Compute Distance Map (cli, bundled in Chest Imaging Platform extension)
- Compute Feature Strength (cli, bundled in Chest Imaging Platform extension)
- Compute Fissure Feature Vectors (cli, bundled in Chest Imaging Platform extension)
- Compute Intensity Statistics (cli, bundled in Chest Imaging Platform extension)
- Convert Chest Region Chest Type To Label Map Value (cli, bundled in Chest Imaging Platform extension)
- Convert Dicom (cli, bundled in Chest Imaging Platform extension)
- Convert Label Map Value To Chest Region Chest Type (cli, bundled in Chest Imaging Platform extension)
- Convert VTK (cli, bundled in UKFTractography extension)
- Corner Annotation (scripted, bundled in Corner Annotation extension)
- Create DICOMSeries (cli, built-in)
- Create Models (loadable, bundled in Slicer IGT extension)
- Crop Lung (cli, bundled in Chest Imaging Platform extension)
- Crop Volume (loadable, built-in)
- Curvature Anisotropic Diffusion (cli, built-in)
- Curve Maker (scripted, bundled in Curve Maker extension)
- Data (loadable, built-in)
- Data Probe (scripted, built-in)
- Data Store (loadable, built-in)
- Dice Computation (loadable, bundled in Dice Computation extension)
- DICOM (scripted, built-in)
- DICOM2Full Brain Tractography (scripted, built-in)
- Dicom Rt Import Export (loadable, bundled in Slicer RT extension)
- Dicom Sro Export (scripted, bundled in Slicer RT extension)
- Dicom Sro Import (loadable, bundled in Slicer RT extension)
- Diffusion Tensor Scalar Measurements (cli, built-in)
- Diffusion Weighted Volume Masking (cli, built-in)
- Distance Map Based Registration (scripted, bundled in Slicer Prostate extension)
- Dose Accumulation (loadable, bundled in Slicer RT extension)
- Dose Comparison (loadable, bundled in Slicer RT extension)
- Dose Morphology (loadable, bundled in Margin Calculator extension)
- Dose Population Histogram (loadable, bundled in Margin Calculator extension)
- Dose Volume Histogram (loadable, bundled in Slicer RT extension)
- Downsize (cli, bundled in CMFreg extension)
- d Pet Brain Quantification (scripted, bundled in Pet Spect Analysis extension)
- DSCMRIAnalysis (cli, bundled in DSCMRIAnalysis extension)
- Dvh Comparison (scripted, bundled in Slicer RT extension)
- DWIConvert (cli, built-in)
- DWIJoint Rician LMMSEFilter (cli, built-in)
- DWIRician LMMSEFilter (cli, built-in)
- DWITo DTIEstimation (cli, built-in)
- DWModeling (cli, bundled in Slicer Prostate extension)
- Easy Clip (scripted, bundled in Easy Clip extension)
- Editor (scripted, built-in)
- EMSegment (loadable, built-in)
- EMSegment Command Line (cli, built-in)
- EMSegment Quick (loadable, built-in)
- EMSegment Transform To New Format (cli, built-in)
- Encode SEG (cli, bundled in Reporting extension)
- Endoscopy (scripted, built-in)
- Enhance Fissures In Image (cli, bundled in Chest Imaging Platform extension)
- Evaluate Lung Lobe Segmentation Results (cli, bundled in Chest Imaging Platform extension)
- Execute System Command (cli, bundled in Chest Imaging Platform extension)
- Extract Chest Label Map (cli, bundled in Chest Imaging Platform extension)
- Extract Fissure Boundary From Lobe Map (cli, bundled in Chest Imaging Platform extension)
- Extract Particles From Chest Region Chest Type (cli, bundled in Chest Imaging Platform extension)
- Extract Skeleton (cli, built-in)
- Fast Grow Cut (loadable, bundled in Fast Grow Cut Effect extension)
- Fast Grow Cut Segmenter (loadable, bundled in Carrera Slice extension)
- Fiber Bundle Label Select (cli, built-in)
- Fiber Bundle To Label Map (scripted, built-in)
- Fiber Post Process (cli, built-in)
- Fiber Tract Measurements (cli, built-in)
- Fiducial Registration (cli, built-in)
- Fiducial Registration Wizard (loadable, bundled in Slicer IGT extension)
- Fiducials To Model Registration (scripted, bundled in Slicer IGT extension)
- Filter Airway Particle Data (cli, bundled in Chest Imaging Platform extension)
- Filter Connected Components (cli, bundled in Chest Imaging Platform extension)
- Filter Fissure Particle Data (cli, bundled in Chest Imaging Platform extension)
- Filter Vessel Particle Data (cli, bundled in Chest Imaging Platform extension)
- Find Patch Match (cli, bundled in Chest Imaging Platform extension)
- Finsler Backtracing (cli, bundled in Finsler Tractography extension)
- Finsler Tractography (cli, bundled in Finsler Tractography extension)
- Fit Lobe Surface Models To Particle Data (cli, bundled in Chest Imaging Platform extension)
- Gaussian Blur Image Filter (cli, built-in)
- Gel Dosimetry Analysis (scripted, bundled in Gel Dosimetry Analysis extension)
- Gel Dosimetry Analysis Algo (loadable, bundled in Gel Dosimetry Analysis extension)
- Generate Atlas Convex Hull (cli, bundled in Chest Imaging Platform extension)
- Generate Binary Thinning3D (cli, bundled in Chest Imaging Platform extension)
- Generate Distance Map From Label Map (cli, bundled in Chest Imaging Platform extension)
- Generate Image Sub Volumes (cli, bundled in Chest Imaging Platform extension)
- Generate Lesion Segmentation (cli, bundled in Chest Imaging Platform extension)
- Generate Lobe Surface Models (cli, bundled in Chest Imaging Platform extension)
- Generate Median Filtered Image (cli, bundled in Chest Imaging Platform extension)
- Generate NLMFiltered Image (cli, bundled in Chest Imaging Platform extension)
- Generate Otsu Lung Cast (cli, bundled in Chest Imaging Platform extension)
- Generate Overlay Images (cli, bundled in Chest Imaging Platform extension)
- Generate Partial Lung Label Map (cli, bundled in Chest Imaging Platform extension)
- Generate Region Histograms And Parenchyma Phenotypes (cli, bundled in Chest Imaging Platform extension)
- Generate Stenciled Label Map From Particles (cli, bundled in Chest Imaging Platform extension)
- Get Structures In Label Map (cli, bundled in Chest Imaging Platform extension)
- Get Transformation Kappa (cli, bundled in Chest Imaging Platform extension)
- Get Transformation Kappa2D (cli, bundled in Chest Imaging Platform extension)
- Get Transformation Similarity Metric (cli, bundled in Chest Imaging Platform extension)
- Gradient Anisotropic Diffusion (cli, built-in)
- Graph Cut Interactive Segmenter (loadable, bundled in Graph Cut Segment extension)
- Grayscale Fill Hole Image Filter (cli, built-in)
- Grayscale Grind Peak Image Filter (cli, built-in)
- Grayscale Model Maker (cli, built-in)
- Growing (cli, bundled in CMFreg extension)
- Gyro Guide (scripted, bundled in Gyro Guide extension)
- Heterogeneity CAD (scripted, bundled in Open CAD extension)
- Histogram Matching (cli, built-in)
- IASEMImport (cli, bundled in IASEM extension)
- IASEMImport Series (cli, bundled in IASEM extension)
- i Gyne (scripted, bundled in i Gyne extension)
- Image Label Combine (cli, built-in)
- Intensity Difference Metric (cli, bundled in Change Tracker extension)
- Intensity Segmenter (cli, bundled in Intensity Segmenter extension)
- Interactive Lobe Segmentation (scripted, bundled in Chest Imaging Platform extension)
- Island Removal (cli, built-in)
- Isodose (loadable, bundled in Slicer RT extension)
- KUtil (scripted, bundled in Carrera Slice extension)
- Label Addition (cli, bundled in CMFreg extension)
- Label Extraction (cli, bundled in CMFreg extension)
- Label Map From Region And Type Points (cli, bundled in Chest Imaging Platform extension)
- Label Map Smoothing (cli, built-in)
- Label Object Statistics (scripted, bundled in IASEM extension)
- Label Particles By Chest Region Chest Type (cli, bundled in Chest Imaging Platform extension)
- Label Statistics (scripted, built-in)
- Landmark Registration (scripted, built-in)
- LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
- LASegmentation Workflow (scripted, bundled in Cardiac MRI Toolkit extension)
- Level Set Segmentation (scripted, bundled in VMTK extension)
- Light Weight Robot IGT (loadable, bundled in Light Weight Robot IGT extension)
- Longitudinal PETCT (loadable, bundled in Longitudinal PETCT extension)
- Lump Nav (scripted, bundled in Lump Nav extension)
- Margin Calculator (scripted, bundled in Margin Calculator extension)
- Markups (loadable, built-in)
- Markups To Model (loadable, bundled in Slicer IGT extension)
- Mask Creation (cli, bundled in CMFreg extension)
- Mask Out Label Map Structures (cli, bundled in Chest Imaging Platform extension)
- Mask Scalar Volume (cli, built-in)
- Median Image Filter (cli, built-in)
- Merge Chest Label Maps (cli, bundled in Chest Imaging Platform extension)
- Merge Models (cli, built-in)
- Merge Particle Data Sets (cli, bundled in Chest Imaging Platform extension)
- Mesh Compression (cli, bundled in CBC 3D I2MConversion extension)
- Mesh Statistics (scripted, bundled in Mesh Statistics Extension extension)
- Mesh To Label Map (cli, bundled in Mesh To Label Map extension)
- Metafile Importer (loadable, bundled in Sequences extension)
- Model Maker (cli, built-in)
- Model Registration (scripted, bundled in Slicer IGT extension)
- Models (loadable, built-in)
- Model To Label Map (cli, built-in)
- Model To Model Distance (cli, bundled in Model To Model Distance extension)
- Motion Simulator (loadable, bundled in Margin Calculator extension)
- Motion Simulator Double Array (loadable, bundled in Margin Calculator extension)
- mp Review (scripted, bundled in mp Review extension)
- mp Review Preprocessor (scripted, bundled in mp Review extension)
- Multiply Scalar Volumes (cli, built-in)
- Multi Volume Explorer (loadable, built-in)
- Multi Volume Importer (scripted, built-in)
- N4ITKBias Field Correction (cli, built-in)
- Needle Finder (scripted, bundled in Needle Finder extension)
- Non Growing (cli, bundled in CMFreg extension)
- Open IGTLink IF (loadable, built-in)
- Open IGTLink Remote (loadable, bundled in Slicer IGT extension)
- Orient Scalar Volume (cli, built-in)
- Particles Display (loadable, bundled in Chest Imaging Platform extension)
- Path Explorer (loadable, bundled in Slicer IGT extension)
- PBNRR (cli, bundled in PBNRR extension)
- Perform Metric Test (cli, built-in)
- Perform Morphological (cli, bundled in Chest Imaging Platform extension)
- Perk Evaluator (loadable, bundled in Perk Tutor extension)
- Perturb Particles (cli, bundled in Chest Imaging Platform extension)
- PETIndi C (scripted, bundled in PET-Indi C extension)
- PETStandard Uptake Value Computation (cli, built-in)
- PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
- PETTumor Segmentation (loadable, bundled in PETTumor Segmentation extension)
- Philips4d Us Dicom Patcher (scripted, bundled in Slicer Heart extension)
- Pick And Paint (scripted, bundled in Pick And Paint Extension extension)
- Pivot Calibration (loadable, bundled in Slicer IGT extension)
- Pk Modeling (cli, bundled in Pk Modeling extension)
- Planar Image (loadable, bundled in Slicer RT extension)
- plastimatch slicer bspline (cli, bundled in Slicer RT extension)
- plastimatch slicer landwarp (cli, bundled in Slicer RT extension)
- Plastimatch Py (loadable, bundled in Slicer RT extension)
- Plm Register (scripted, bundled in Slicer RT extension)
- Plus Remote (scripted, bundled in Slicer IGT extension)
- Probe Volume With Model (cli, built-in)
- Python Metrics Calculator (scripted, bundled in Perk Tutor extension)
- Q3DC (scripted, bundled in Q3DC extension)
- Quad Edge Surface Mesher (cli, bundled in Slicer Prostate extension)
- Quality Control (cli, bundled in Chest Imaging Platform extension)
- Quantitative Indices CLI (cli, bundled in PET-Indi C extension)
- Quantitative Indices Tool (scripted, bundled in PET-Indi C extension)
- Read Dicom Write Tags (cli, bundled in Chest Imaging Platform extension)
- Read NRRDs Write VTK (cli, bundled in Chest Imaging Platform extension)
- Read Vida Write CIP (cli, bundled in Chest Imaging Platform extension)
- Read VTKWrite NRRDs (cli, bundled in Chest Imaging Platform extension)
- Read Write Image Data (cli, bundled in Chest Imaging Platform extension)
- Read Write Region And Type Points (cli, bundled in Chest Imaging Platform extension)
- Reformat (loadable, built-in)
- Region Type (loadable, bundled in Chest Imaging Platform extension)
- Region Type Locations To ROIVolume (cli, bundled in Chest Imaging Platform extension)
- Register CT (cli, bundled in Chest Imaging Platform extension)
- Register Label Maps (cli, bundled in Chest Imaging Platform extension)
- Register Lung Atlas (cli, bundled in Chest Imaging Platform extension)
- Remap Label Map (cli, bundled in Chest Imaging Platform extension)
- Remove Chest Type From Label Map Using Particles (cli, bundled in Chest Imaging Platform extension)
- Remove Particles From Particles Data Set (cli, bundled in Chest Imaging Platform extension)
- Resample CT (cli, bundled in Chest Imaging Platform extension)
- Resample DTIlog Euclidean (cli, bundled in Resample DTIlog Euclidean extension)
- Resample DTIVolume (cli, built-in)
- Resample Label Map (cli, bundled in Chest Imaging Platform extension)
- Resample Scalar Vector DWIVolume (cli, built-in)
- Rescale Label Map (cli, bundled in Chest Imaging Platform extension)
- Robust Statistics Segmenter (cli, built-in)
- Sample Data (scripted, built-in)
- Scar Visualization (scripted, bundled in Cardiac MRI Toolkit extension)
- Scene Views (loadable, built-in)
- Scour Particle Data (cli, bundled in Chest Imaging Platform extension)
- SEG2NRRD (cli, bundled in Reporting extension)
- Segmentations (loadable, bundled in Slicer RT extension)
- Segmentation Smoothing (cli, bundled in Slicer Prostate extension)
- Segment CAD (scripted, bundled in Open CAD extension)
- Segment Comparison (loadable, bundled in Slicer RT extension)
- Segment Lung Lobes (cli, bundled in Chest Imaging Platform extension)
- Segment Morphology (loadable, bundled in Slicer RT extension)
- Sequence Browser (loadable, bundled in Sequences extension)
- Sequences (loadable, bundled in Sequences extension)
- Simple Filters (scripted, built-in)
- Simple Region Growing Segmentation (cli, built-in)
- Skull Stripper (cli, bundled in Skull Stripper extension)
- Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)
- Spacing Aware Curvature Diffusion (cli, bundled in IASEM extension)
- Spinal Curvature Measurement (scripted, bundled in Scoliosis extension)
- Split Left Lung Right Lung (cli, bundled in Chest Imaging Platform extension)
- Subject Hierarchy (loadable, built-in)
- Subtract Scalar Volumes (cli, built-in)
- Surface Registration (scripted, bundled in CMFreg extension)
- Surface Toolbox (scripted, built-in)
- SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
- Swiss Skull Stripper (cli, bundled in Swiss Skull Stripper extension)
- Synthetic RTDose (scripted, bundled in Margin Calculator extension)
- T1Mapping (cli, bundled in T1Mapping extension)
- Tables (loadable, built-in)
- TCIABrowser (scripted, bundled in TCIABrowser extension)
- Threshold Scalar Volume (cli, built-in)
- Tracker Stabilizer (loadable, bundled in Tracker Stabilizer extension)
- Tractography Display (loadable, built-in)
- Tractography Interactive Seeding (loadable, built-in)
- Tractography Label Map Seeding (cli, built-in)
- Transfer Field Data To From Point Data (cli, bundled in Chest Imaging Platform extension)
- Transfer Region And Type Indices To From Points (cli, bundled in Chest Imaging Platform extension)
- Transform Fusion (loadable, bundled in Slicer IGT extension)
- Transform Recorder (loadable, bundled in Perk Tutor extension)
- Transforms (loadable, built-in)
- UKFTractography (cli, bundled in UKFTractography extension)
- Ultrasound Snapshots (loadable, bundled in Slicer IGT extension)
- Units (loadable, built-in)
- Valve View (scripted, bundled in Slicer Heart extension)
- VBRAINSDemon Warp (cli, built-in)
- Vector To Scalar Volume (scripted, built-in)
- Vesselness Filtering (scripted, bundled in VMTK extension)
- Vff File Reader (loadable, bundled in Slicer RT extension)
- View Controllers (loadable, built-in)
- Viewpoint (scripted, bundled in Lump Nav extension)
- Volume Clip With Model (scripted, bundled in Volume Clip extension)
- Volume Clip With Roi (scripted, bundled in Volume Clip extension)
- Volume Rendering (loadable, built-in)
- Volume Reslice Driver (loadable, bundled in Slicer IGT extension)
- Volumes (loadable, built-in)
- Voting Binary Hole Filling Image Filter (cli, built-in)
- Wasp (scripted, bundled in Wasp extension)
- Watchdog (loadable, bundled in Slicer IGT extension)
- Welcome (loadable, built-in)
- Window Level Effect (scripted, bundled in Window Level Effect extension)
- Workflow Segmentation (loadable, bundled in Perk Tutor extension)
