Revision as of 11:40, 9 June 2015

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Modules by contributing individual

Modules by contributing individual

214 contributing individuals:

'
)
A
a
Adam Rankin (Robarts)
Akila Viswanathan
Alan Morris (Utah)
Alex Yarmakovich (Isomics)
Alex Yarmarkovich (Kitware))
Ali Ghayoor
Alireza Mehrtash (SPL and BWH)
Allen Tannenbaum (Stony Brook University)
Amelie Meyer (PerkLab, Queen's University)
Analysis Laboratory
Andras Lasso (PerkLab, Queen's Universit)
Andreas Freudling (SPL, BWH)
Andrey Fedorov (SPL/BWH)
Andriy Fedorov (BWH)
Andriy Kot (CRTC)
Anonymous
Antonio Damato
Antonio Tristan Vega (UVa)
Anuja Sharma
Applied Chest Imaging Laboratory
Artem Mamonov (MGH)
Atsushi Yamada (Shiga University of Medical Science)
b
Beatriz Paniagua from Department of Orthodontics (UNC)
Benjamin Long (Kitware)
Benjamin Yvernault
Bill Lorensen (Noware)
Brad Davis
Bradley Lowekamp (MSC/NLM)
Brian Zenger (CARMA)
Brigham
BWH
C
Carl-Fredrik Westin
Carl-Fredrik Westin. The directional iterators were contributed by Luis Ibanez (Kitware))
Casey B Goodlett (Kitware)
Charles Marion (Kitware)
Christian Bauer (Univ. of Iowa)
Christian Baumgartner
Csaba Pinter (PerkLab, Queen's University)
d
Dan Marcus (Washington University in St. Louis)
Daniel Blezek (GE)
Daniel Haehn (SPL, BWH, UPenn)
Danny Perry (Utah)
Demian Wassermann (Brigham and Women's Hospital)
Dirk Padfield (GE)
Dominik Meier (SPL, BWH)
e
er (KGH, Queen's University)
Ethan Ulrich (Univ. of Iowa)
Eugene Kholmovski (CARMA)
ez (UVa)
Fotis Drakopoulos (CRTC)
Francois Budin (NIRAL, UNC)
Franklin King (PerkLab, Queen's University)
g
Gopalkrishna Veni
Greg Gardner (Utah)
Greg Harris
Gregory Sharp (MGH)
Guido Gerig (UNC)
Guillaume Pernelle
H
Hans J. Johnson
Hans Johnson (SINAPSE)
hans-johnson -at- uiowa.edu
http://www.psychiatry.uiowa.edu
i
Idk
Ipek Oguz
Ivan Kolesov (Stony Brook University)
Jaime Garcia Guevara (Queen's University)
Jaime Garcia-Guevara (Queen's University)
Jan Egger
Jayashree Kalpathy-Cramer (MGH)
Jayender Jagadeesan (BWH)
Jean-Baptiste Berger (Kitware)
Jean-Christophe Fillion-Robin (Kitware)
Jennifer Andrea (PerkLab, Queen's University)
Jessica Forbes (SINAPSE)
Jim Miller (GE)
Johan Andruejol (Kitware)
John Buatti (Univ. of Iowa)
John Evans (MGH)
Jonathan Bronson (SCI Institute)
Jorge Onieva (jonieva@bwh.harvard.edu)
Josh Cates (Utah)
Joy Matsui (UIowa)
Julien Finet (Kitware)
Julien Jomier (Kitware)
Junichi Tokuda (BWH)
K
Kent Williams (UIowa)
Kent WIlliams
Kevin Alex (KGH, Queen's University)
Kevin Wang (Princess Margaret Cancer Centre)
Kilian M Pohl (SRI/Stanford)
Kilian Pohl (UPenn)
Koichiro Murakami (SUMS)
Kyle Sunderl (Queen's University)
L
Lauren Barber
Lauren J. O'Donnell (SPL, BWH)
Lauren O'Donnell (SPL, BWH)
Laurent Chauvin (BWH)
Liangjia Zhu (Stony Brook University)
Luca Antiga (Orobix)
Luping Fang (College of Information Engineering, Zhejiang University of Technology, Hangzhou, China)
Marc Niethammer (UNC)
Mark Scully (Uiowa)
Markus Van Tol (University of Iowa) and Andrey Fedorov (SPL)
Markus van Tol (Univ. of Iowa)
Martin Styner (UNC)
Mason Winsauer
Matt Lougheed (PerkLab, Queen's University)
Mattea Welch (PerkLab, Queen's University)
Matthew Holden (Queen's University)
Matthew S. Holden (Queen's University)
Matthew Woehlke (Kitware)
Michael Jeulin-Lagarrigue (Kitware)
n
N
Nabgha Fahrat
Neuro Image Resarch
Nicholas Herlambang (AZE R&D)
Nick Tustison (UPenn)
Nicole Aucoin (BWH)
Nikos Chrisochoides (CRTC)
o
Olivier Clatz (Asclepios INRIA) and Nikos Chrisochoides (CRTC)
P
Paolo Zaffino (University 'Magna Graecia' of Catanzaro)
Pat Marion (Kitware)
Patricio Vela (Georgia Institute of Technology)
Paul Mercea (University of Heidelberg)
Pengdong Xiao (Department of Orthodontics, UNC)
Peter Black (BWH)
Peter Karasev (Georgia Tech)
Peter Savadjiev (Kitware))
Pierre Seroul (UNC)
Pietro Nardelli (University College Cork)
Please direct questions or suggestions to http://groups.google.com/group/plastimatch
Polina Goll
Q
Qing Pan (College of Information Engineering, Zhejiang University of Technology, Hangzhou, China)
r
Raul San Jose (SPL, BWH)
Reinhard Beichel (University of Iowa)
Reinhard R. Beichel (Univ. of Iowa)
Rob Mac Leod (Utah)
Ron Kikinis (BWH)
Ross Whitaker (Utah)
Ruifeng Chen (College of Information Engineering, Zhejiang University of Technology, Hangzhou, China)
S
s
Salma Bengali (CARMA)
Sam Song
Santiago Aja Fern (UVa)
Sebastian Tauscher (LUH)
Sebastien Barré (Kitware)
Sebastien Barre
Shigeyuki Naka (SUMS)
Soichiro Tani (BWH, SUMS)
Sonia Pujol (SPL, BWH)
Stefan Lienhard
Stephen Aylward (Kitware)
Stephen R Aylward (Kitware)
Steve Pieper (Isomics Inc.)
Sunil Kumar (Moka Creative, LLC, kumar.sunil.p@gmail.com)
Sylvain Gouttard
T
t
Tamas Ungi (Queen's Universit)
the University of North Carolina at Chapel Hill (UNC)
Thomas Lawson (MRC Harwell, Oxfordshire)
Tina Kapur
Tobias Penzkofer
Tohru Tani (SUMS)
u
U
UNC Medical School
Uof M School Of Dentistry
Uof M School of Dentistry
v
Vince Magnotta (UIowa)
Vincent A. Magnotta
Vincent Magnotta
Vinicius Boen (Univ of Michigan)
Vivek Narayan (BWH)
W
Wendy Plesniak (SPL, BWH)
Women's Hopsital
Women's Hospital
women's hospital
Women's hospital
Xiao Da (MGH)
Xiaodong Tao (GE)
Xiaojun Chen
y Wells
Yanling Liu (SAIC-Frederick, NCI-Frederick)
Yi Gao (BWH/UAB)
Yinglin Lee (SPL, BWH)
Yingxuan Zhu (GE)
Yinpeng Li
Yixun Liu (CRTC)
Yogesh Rathi (yogesh@bwh.harvard.edu)
Yong Zhang (IBM)
Yumin Yuan
Yundi Shi

'

Dicom Rt Import Export Plugin

)

Dicom Rt Import Export Plugin

A

Dicom Rt Import Export Plugin

a

Dicom Rt Import Export Plugin

Adam Rankin

Segmentations (loadable, bundled in Slicer RT extension)

Akila Viswanathan

i Gyne (scripted, bundled in i Gyne extension)
Needle Finder (scripted, bundled in Needle Finder extension)

Alan Morris

CMRToolkit Automatic Left Atrial Scar (cli, bundled in Cardiac MRI Toolkit extension)
CMRToolkit Axial Dilate (cli, bundled in Cardiac MRI Toolkit extension)
CMRToolkit Boolean REMOVEFilter (cli, bundled in Cardiac MRI Toolkit extension)
CMRToolkit Connected Threshold Filter (cli, bundled in Cardiac MRI Toolkit extension)
CMRToolkit Inhomogeneity Correction (cli, bundled in Cardiac MRI Toolkit extension)
CMRToolkit Isolated Connected Filter (cli, bundled in Cardiac MRI Toolkit extension)
CMRToolkit LASegmentation Graph Cuts (cli, bundled in Cardiac MRI Toolkit extension)
CMRToolkit PVAntrum Cut (cli, bundled in Cardiac MRI Toolkit extension)
CMRToolkit Registration (scripted, bundled in Cardiac MRI Toolkit extension)
CMRToolkit Registration BRAINSFit (scripted, bundled in Cardiac MRI Toolkit extension)
CMRToolkit Wizard (scripted, bundled in Cardiac MRI Toolkit extension)
LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
LASegmentation Workflow (scripted, bundled in Cardiac MRI Toolkit extension)
Scar Visualization (scripted, bundled in Cardiac MRI Toolkit extension)

Alex Yarmakovich

Models (loadable, built-in)
Tractography Interactive Seeding (loadable, built-in)

Alex Yarmarkovich

Data (loadable, built-in)
Fiber Tract Measurements (cli, built-in)
Finsler Backtracing (cli, bundled in Finsler Tractography extension)
Finsler Tractography (cli, bundled in Finsler Tractography extension)
Image Label Combine (cli, built-in)
Transforms (loadable, built-in)
Volume Rendering (loadable, built-in)
Volumes (loadable, built-in)

Ali Ghayoor

BRAINSTransform Convert (cli, built-in)
Perform Metric Test (cli, built-in)

Alireza Mehrtash

i Gyne (scripted, bundled in i Gyne extension)
Needle Finder (scripted, bundled in Needle Finder extension)
TCIABrowser (scripted, bundled in TCIABrowser extension)

Allen Tannenbaum

Carrera Slice Effect (scripted, bundled in Carrera Slice extension)
Fast Grow Cut Effect (scripted, bundled in Fast Grow Cut Effect extension)
LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
Robust Statistics Segmenter (cli, built-in)

Amelie Meyer

Plus Remote (scripted, bundled in Slicer IGT extension)

Analysis Laboratory

Apply Matrix (cli, bundled in CMFreg extension)
Downsize (cli, bundled in CMFreg extension)
Growing (cli, bundled in CMFreg extension)
Label Addition (cli, bundled in CMFreg extension)
Label Extraction (cli, bundled in CMFreg extension)
Mask Creation (cli, bundled in CMFreg extension)
Non Growing (cli, bundled in CMFreg extension)

Andras Lasso

Breach Warning (loadable, bundled in Slicer IGT extension)
Dicom Rt Import Export (loadable, bundled in Slicer RT extension)
Distance Map Based Registration (scripted, bundled in Slicer Prostate extension)
Dose Accumulation (loadable, bundled in Slicer RT extension)
Dose Comparison (loadable, bundled in Slicer RT extension)
Dose Volume Histogram (loadable, bundled in Slicer RT extension)
Isodose (loadable, bundled in Slicer RT extension)
Markups To Model (loadable, bundled in Slicer IGT extension)
Matlab Commander (cli, bundled in Matlab Bridge extension)
Matlab Module Generator (loadable, bundled in Matlab Bridge extension)
Model Registration (scripted, bundled in Slicer IGT extension)
Plus Remote (scripted, bundled in Slicer IGT extension)
Py Dev Remote Debug (scripted, bundled in Py Dev Remote Debug extension)
Segmentations (loadable, bundled in Slicer RT extension)
Segment Comparison (loadable, bundled in Slicer RT extension)
Segment Morphology (loadable, bundled in Slicer RT extension)
Sequences (loadable, bundled in Sequences extension)
Tracker Stabilizer (loadable, bundled in Tracker Stabilizer extension)
Transforms (loadable, built-in)
Volume Clip With Model (scripted, bundled in Volume Clip extension)
Volume Clip With Roi (scripted, bundled in Volume Clip extension)

Andreas Freudling

Volume Rendering (loadable, built-in)

Andrey Fedorov

Body Centric Cubic Mesh (cli, bundled in CBC 3D I2MConversion extension)
BSpline To Deformation Field (cli, built-in)
Change Tracker (scripted, bundled in Change Tracker extension)
Change Tracker Self Test
Crop Volume (loadable, built-in)
Crop Volume Self Test
DICOMRWVMPlugin
DICOMSegmentation Plugin
Distance Map Based Registration (scripted, bundled in Slicer Prostate extension)
Intensity Difference Metric (cli, bundled in Change Tracker extension)
Label To DICOMSEGConverter (scripted, bundled in Reporting extension)
Label To DICOMSEGConverter Self Test
Mesh Compression (cli, bundled in CBC 3D I2MConversion extension)
Multi Volume Explorer (loadable, built-in)
Multi Volume Importer (scripted, built-in)
Multi Volume Importer Plugin
N4ITKBias Field Correction (cli, built-in)
PBNRR (cli, bundled in PBNRR extension)
Pk Modeling (cli, bundled in Pk Modeling extension)
Quad Edge Surface Mesher (cli, bundled in Slicer Prostate extension)
Quantitative Indices CLI (cli, bundled in PET-Indi C extension)
Quantitative Indices Tool (scripted, bundled in PET-Indi C extension)
Reporting (loadable, bundled in Reporting extension)
Reporting Self Test
Segmentation Smoothing (cli, bundled in Slicer Prostate extension)
SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
TCIABrowser (scripted, bundled in TCIABrowser extension)

Andriy Fedorov

DWModeling (cli, bundled in Slicer Prostate extension)
T1 Mapping (scripted, bundled in T1 Mapping extension)

Andriy Kot

PBNRR (cli, bundled in PBNRR extension)

Anonymous

CLIROITest (cli, built-in)
EMSegment Transform To New Format (cli, built-in)

Antonio Damato

i Gyne (scripted, bundled in i Gyne extension)
Needle Finder (scripted, bundled in Needle Finder extension)

Antonio Tristan Vega

DWIJoint Rician LMMSEFilter (cli, built-in)
DWIRician LMMSEFilter (cli, built-in)
DWIUnbiased Non Local Means Filter (cli, built-in)
Finsler Backtracing (cli, bundled in Finsler Tractography extension)
Finsler Tractography (cli, bundled in Finsler Tractography extension)

Anuja Sharma

dtitractstat (cli, bundled in DTIAtlas Fiber Analyzer extension)

Applied Chest Imaging Laboratory

CIP Body Composition (scripted, bundled in Chest Imaging Platform extension)
CIP Common (scripted, bundled in Chest Imaging Platform extension)
CIP Get Image (scripted, bundled in Chest Imaging Platform extension)
Classify Fissure Particles (cli, bundled in Chest Imaging Platform extension)
Compute Cross Sectional Area (cli, bundled in Chest Imaging Platform extension)
Compute Distance Map (cli, bundled in Chest Imaging Platform extension)
Compute Feature Strength (cli, bundled in Chest Imaging Platform extension)
Compute Fissure Feature Vectors (cli, bundled in Chest Imaging Platform extension)
Compute Intensity Statistics (cli, bundled in Chest Imaging Platform extension)
Convert Chest Region Chest Type To Label Map Value (cli, bundled in Chest Imaging Platform extension)
Convert Dicom (cli, bundled in Chest Imaging Platform extension)
Convert Label Map Value To Chest Region Chest Type (cli, bundled in Chest Imaging Platform extension)
Crop Lung (cli, bundled in Chest Imaging Platform extension)
Emphysema Subtypes (scripted, bundled in Chest Imaging Platform extension)
Enhance Fissures In Image (cli, bundled in Chest Imaging Platform extension)
Evaluate Lung Lobe Segmentation Results (cli, bundled in Chest Imaging Platform extension)
Extract Chest Label Map (cli, bundled in Chest Imaging Platform extension)
Extract Particles From Chest Region Chest Type (cli, bundled in Chest Imaging Platform extension)
Filter Airway Particle Data (cli, bundled in Chest Imaging Platform extension)
Filter Connected Components (cli, bundled in Chest Imaging Platform extension)
Filter Fissure Particle Data (cli, bundled in Chest Imaging Platform extension)
Filter Vessel Particle Data (cli, bundled in Chest Imaging Platform extension)
Fit Lobe Surface Models To Particle Data (cli, bundled in Chest Imaging Platform extension)
Generate Atlas Convex Hull (cli, bundled in Chest Imaging Platform extension)
Generate Binary Thinning3D (cli, bundled in Chest Imaging Platform extension)
Generate Distance Map From Label Map (cli, bundled in Chest Imaging Platform extension)
Generate Image Sub Volumes (cli, bundled in Chest Imaging Platform extension)
Generate Lesion Segmentation (cli, bundled in Chest Imaging Platform extension)
Generate Lobe Surface Models (cli, bundled in Chest Imaging Platform extension)
Generate Median Filtered Image (cli, bundled in Chest Imaging Platform extension)
Generate NLMFiltered Image (cli, bundled in Chest Imaging Platform extension)
Generate Otsu Lung Cast (cli, bundled in Chest Imaging Platform extension)
Generate Overlay Images (cli, bundled in Chest Imaging Platform extension)
Generate Partial Lung Label Map (cli, bundled in Chest Imaging Platform extension)
Generate Region Histograms And Parenchyma Phenotypes (cli, bundled in Chest Imaging Platform extension)
Generate Stenciled Label Map From Particles (cli, bundled in Chest Imaging Platform extension)
Get Structures In Label Map (cli, bundled in Chest Imaging Platform extension)
Get Transformation Kappa (cli, bundled in Chest Imaging Platform extension)
Get Transformation Kappa2D (cli, bundled in Chest Imaging Platform extension)
Get Transformation Similarity Metric (cli, bundled in Chest Imaging Platform extension)
Label Map From Region And Type Points (cli, bundled in Chest Imaging Platform extension)
Label Particles By Chest Region Chest Type (cli, bundled in Chest Imaging Platform extension)
Lung Registration (scripted, bundled in Chest Imaging Platform extension)
Mask Out Label Map Structures (cli, bundled in Chest Imaging Platform extension)
Merge Chest Label Maps (cli, bundled in Chest Imaging Platform extension)
Merge Particle Data Sets (cli, bundled in Chest Imaging Platform extension)
Parenchyma Analysis (scripted, bundled in Chest Imaging Platform extension)
Perform Morphological (cli, bundled in Chest Imaging Platform extension)
Perturb Particles (cli, bundled in Chest Imaging Platform extension)
Picasa Snap (scripted, bundled in Chest Imaging Platform extension)
Quality Control (cli, bundled in Chest Imaging Platform extension)
Read Dicom Write Tags (cli, bundled in Chest Imaging Platform extension)
Read NRRDs Write VTK (cli, bundled in Chest Imaging Platform extension)
Read Vida Write CIP (cli, bundled in Chest Imaging Platform extension)
Read VTKWrite NRRDs (cli, bundled in Chest Imaging Platform extension)
Read Write Image Data (cli, bundled in Chest Imaging Platform extension)
Read Write Region And Type Points (cli, bundled in Chest Imaging Platform extension)
Register CT (cli, bundled in Chest Imaging Platform extension)
Register Label Maps (cli, bundled in Chest Imaging Platform extension)
Register Lung Atlas (cli, bundled in Chest Imaging Platform extension)
Remap Label Map (cli, bundled in Chest Imaging Platform extension)
Remove Chest Type From Label Map Using Particles (cli, bundled in Chest Imaging Platform extension)
Remove Particles From Particles Data Set (cli, bundled in Chest Imaging Platform extension)
Resample CT (cli, bundled in Chest Imaging Platform extension)
Resample Label Map (cli, bundled in Chest Imaging Platform extension)
Rescale Label Map (cli, bundled in Chest Imaging Platform extension)
Scour Particle Data (cli, bundled in Chest Imaging Platform extension)
Segment Lung Lobes (cli, bundled in Chest Imaging Platform extension)
Split Left Lung Right Lung (cli, bundled in Chest Imaging Platform extension)
Transfer Field Data To From Point Data (cli, bundled in Chest Imaging Platform extension)

Artem Mamonov

T1 Mapping (scripted, bundled in T1 Mapping extension)

Atsushi Yamada

Corner Annotation (scripted, bundled in Corner Annotation extension)
Path Explorer (loadable, bundled in Slicer IGT extension)
Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)

b

Dicom Rt Import Export Plugin

Beatriz Paniagua from Department of Orthodontics

Intensity Segmenter (cli, bundled in Intensity Segmenter extension)

Benjamin Long

Sample Data (scripted, built-in)

Benjamin Yvernault

DTIAtlas Fiber Analyzer (cli, bundled in DTIAtlas Fiber Analyzer extension)

Bill Lorensen

Add Scalar Volumes (cli, built-in)
Checker Board Filter (cli, built-in)
Create DICOMSeries (cli, built-in)
Curvature Anisotropic Diffusion (cli, built-in)
Diffusion Tensor Test (cli, built-in)
Execution Model Tour (cli, built-in)
Gradient Anisotropic Diffusion (cli, built-in)
Grayscale Fill Hole Image Filter (cli, built-in)
Grayscale Grind Peak Image Filter (cli, built-in)
Grayscale Model Maker (cli, built-in)
Histogram Matching (cli, built-in)
Median Image Filter (cli, built-in)
Model Maker (cli, built-in)
Multiply Scalar Volumes (cli, built-in)
Orient Scalar Volume (cli, built-in)
Otsu Threshold Image Filter (cli, built-in)
Resample Scalar Volume (cli, built-in)
Spacing Aware Curvature Diffusion (cli, bundled in IASEM extension)
Subtract Scalar Volumes (cli, built-in)
Swiss Skull Stripper (cli, bundled in Swiss Skull Stripper extension)
Voting Binary Hole Filling Image Filter (cli, built-in)

Brad Davis

EMSegment Command Line (cli, built-in)

Bradley Lowekamp

Bin Shrink (cli, bundled in IASEM extension)
Double Threshold Effect (scripted, bundled in IASEM extension)
IASEMImport (cli, bundled in IASEM extension)
IASEMImport Series (cli, bundled in IASEM extension)
Label Object Statistics (scripted, bundled in IASEM extension)
Simple Filters (scripted, built-in)
Spacing Aware Curvature Diffusion (cli, bundled in IASEM extension)

Brian Zenger

CMRToolkit Wizard (scripted, bundled in Cardiac MRI Toolkit extension)

Brigham

CIP Body Composition (scripted, bundled in Chest Imaging Platform extension)
CIP Common (scripted, bundled in Chest Imaging Platform extension)
CIP Get Image (scripted, bundled in Chest Imaging Platform extension)
Classify Fissure Particles (cli, bundled in Chest Imaging Platform extension)
Compute Cross Sectional Area (cli, bundled in Chest Imaging Platform extension)
Compute Distance Map (cli, bundled in Chest Imaging Platform extension)
Compute Feature Strength (cli, bundled in Chest Imaging Platform extension)
Compute Fissure Feature Vectors (cli, bundled in Chest Imaging Platform extension)
Compute Intensity Statistics (cli, bundled in Chest Imaging Platform extension)
Convert Chest Region Chest Type To Label Map Value (cli, bundled in Chest Imaging Platform extension)
Convert Dicom (cli, bundled in Chest Imaging Platform extension)
Convert Label Map Value To Chest Region Chest Type (cli, bundled in Chest Imaging Platform extension)
Crop Lung (cli, bundled in Chest Imaging Platform extension)
Enhance Fissures In Image (cli, bundled in Chest Imaging Platform extension)
Evaluate Lung Lobe Segmentation Results (cli, bundled in Chest Imaging Platform extension)
Extract Chest Label Map (cli, bundled in Chest Imaging Platform extension)
Extract Particles From Chest Region Chest Type (cli, bundled in Chest Imaging Platform extension)
Filter Airway Particle Data (cli, bundled in Chest Imaging Platform extension)
Filter Connected Components (cli, bundled in Chest Imaging Platform extension)
Filter Fissure Particle Data (cli, bundled in Chest Imaging Platform extension)
Filter Vessel Particle Data (cli, bundled in Chest Imaging Platform extension)
Fit Lobe Surface Models To Particle Data (cli, bundled in Chest Imaging Platform extension)
Generate Atlas Convex Hull (cli, bundled in Chest Imaging Platform extension)
Generate Binary Thinning3D (cli, bundled in Chest Imaging Platform extension)
Generate Distance Map From Label Map (cli, bundled in Chest Imaging Platform extension)
Generate Image Sub Volumes (cli, bundled in Chest Imaging Platform extension)
Generate Lesion Segmentation (cli, bundled in Chest Imaging Platform extension)
Generate Lobe Surface Models (cli, bundled in Chest Imaging Platform extension)
Generate Median Filtered Image (cli, bundled in Chest Imaging Platform extension)
Generate NLMFiltered Image (cli, bundled in Chest Imaging Platform extension)
Generate Otsu Lung Cast (cli, bundled in Chest Imaging Platform extension)
Generate Overlay Images (cli, bundled in Chest Imaging Platform extension)
Generate Partial Lung Label Map (cli, bundled in Chest Imaging Platform extension)
Generate Region Histograms And Parenchyma Phenotypes (cli, bundled in Chest Imaging Platform extension)
Generate Stenciled Label Map From Particles (cli, bundled in Chest Imaging Platform extension)
Get Structures In Label Map (cli, bundled in Chest Imaging Platform extension)
Get Transformation Kappa (cli, bundled in Chest Imaging Platform extension)
Get Transformation Kappa2D (cli, bundled in Chest Imaging Platform extension)
Get Transformation Similarity Metric (cli, bundled in Chest Imaging Platform extension)
Label Map From Region And Type Points (cli, bundled in Chest Imaging Platform extension)
Label Particles By Chest Region Chest Type (cli, bundled in Chest Imaging Platform extension)
Lung Registration (scripted, bundled in Chest Imaging Platform extension)
Mask Out Label Map Structures (cli, bundled in Chest Imaging Platform extension)
Merge Chest Label Maps (cli, bundled in Chest Imaging Platform extension)
Merge Particle Data Sets (cli, bundled in Chest Imaging Platform extension)
Perform Morphological (cli, bundled in Chest Imaging Platform extension)
Perturb Particles (cli, bundled in Chest Imaging Platform extension)
Picasa Snap (scripted, bundled in Chest Imaging Platform extension)
Quality Control (cli, bundled in Chest Imaging Platform extension)
Read Dicom Write Tags (cli, bundled in Chest Imaging Platform extension)
Read NRRDs Write VTK (cli, bundled in Chest Imaging Platform extension)
Read Vida Write CIP (cli, bundled in Chest Imaging Platform extension)
Read VTKWrite NRRDs (cli, bundled in Chest Imaging Platform extension)
Read Write Image Data (cli, bundled in Chest Imaging Platform extension)
Read Write Region And Type Points (cli, bundled in Chest Imaging Platform extension)
Register CT (cli, bundled in Chest Imaging Platform extension)
Register Label Maps (cli, bundled in Chest Imaging Platform extension)
Register Lung Atlas (cli, bundled in Chest Imaging Platform extension)
Remap Label Map (cli, bundled in Chest Imaging Platform extension)
Remove Chest Type From Label Map Using Particles (cli, bundled in Chest Imaging Platform extension)
Remove Particles From Particles Data Set (cli, bundled in Chest Imaging Platform extension)
Resample CT (cli, bundled in Chest Imaging Platform extension)
Resample Label Map (cli, bundled in Chest Imaging Platform extension)
Rescale Label Map (cli, bundled in Chest Imaging Platform extension)
Scour Particle Data (cli, bundled in Chest Imaging Platform extension)
Segment Lung Lobes (cli, bundled in Chest Imaging Platform extension)
Split Left Lung Right Lung (cli, bundled in Chest Imaging Platform extension)
Transfer Field Data To From Point Data (cli, bundled in Chest Imaging Platform extension)

BWH

DICOMSegmentation Plugin
Multi Volume Importer Plugin

C

Dicom Rt Import Export Plugin

Carl-Fredrik Westin

UKFTractography (cli, bundled in UKFTractography extension)

Carl-Fredrik Westin. The directional iterators were contributed by Luis Ibanez

Finsler Backtracing (cli, bundled in Finsler Tractography extension)
Finsler Tractography (cli, bundled in Finsler Tractography extension)

Casey B Goodlett

Expert Automated Registration (cli, built-in)
Fiducial Registration (cli, built-in)

Charles Marion

Data Store (loadable, built-in)

Christian Bauer

PETIndi C (scripted, bundled in PET-Indi C extension)
PETTumor Segmentation (loadable, bundled in PETTumor Segmentation extension)
PETTumor Segmentation Effect (scripted, bundled in PETTumor Segmentation extension)
Quantitative Indices CLI (cli, bundled in PET-Indi C extension)
Quantitative Indices Tool (scripted, bundled in PET-Indi C extension)
SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)

Christian Baumgartner

Convert VTK (cli, bundled in UKFTractography extension)
UKFTractography (cli, bundled in UKFTractography extension)

Csaba Pinter

Batch Structure Set Conversion (scripted, bundled in Slicer RT extension)
Beams (loadable, bundled in Slicer RT extension)
Data (loadable, built-in)
Dicom Rt Import Export (loadable, bundled in Slicer RT extension)
Dicom Rt Import Self Test
DICOMScalar Volume Plugin
Dose Accumulation (loadable, bundled in Slicer RT extension)
Dose Comparison (loadable, bundled in Slicer RT extension)
Dose Volume Histogram (loadable, bundled in Slicer RT extension)
Dvh Comparison (scripted, bundled in Slicer RT extension)
Gel Dosimetry Analysis (scripted, bundled in Gel Dosimetry Analysis extension)
Gel Dosimetry Analysis Algo (loadable, bundled in Gel Dosimetry Analysis extension)
IGRTWorkflow Self Test
Isodose (loadable, bundled in Slicer RT extension)
Planar Image (loadable, bundled in Slicer RT extension)
Segmentations (loadable, bundled in Slicer RT extension)
Segment Comparison (loadable, bundled in Slicer RT extension)
Segment Morphology (loadable, bundled in Slicer RT extension)
Subject Hierarchy (loadable, built-in)
Subject Hierarchy Core Plugins Self Test
Subject Hierarchy Generic Self Test
Vff File Reader (loadable, bundled in Slicer RT extension)

d

Dicom Rt Import Export Plugin

Dan Marcus

Xnat Slicer (scripted, bundled in XNATSlicer extension)

Daniel Blezek

Execution Model Tour (cli, built-in)

Daniel Haehn

Annotations (loadable, built-in)
Centerline Computation (scripted, bundled in VMTK extension)
EMSegment (loadable, built-in)
EMSegment Command Line (cli, built-in)
Level Set Segmentation (scripted, bundled in VMTK extension)
Merge Models (cli, built-in)
Scene Views (loadable, built-in)
Vesselness Filtering (scripted, bundled in VMTK extension)

Danny Perry

CMRToolkit Inhomogeneity Correction (cli, bundled in Cardiac MRI Toolkit extension)
LAScar Segmenter (cli, bundled in LAScar Segmenter extension)

Demian Wassermann

DICOM2Full Brain Tractography (scripted, built-in)
Diffusion Weighted Volume Masking (cli, built-in)
Fiber Bundle Label Select (cli, built-in)
Finsler Backtracing (cli, bundled in Finsler Tractography extension)
Finsler Tractography (cli, bundled in Finsler Tractography extension)
test tractography display
Tractography Label Map Seeding (cli, built-in)

Dirk Padfield

Label Map Smoothing (cli, built-in)

Dominik Meier

Fiducial Registration (cli, built-in)

e

Dicom Rt Import Export Plugin

er

Gel Dosimetry Analysis (scripted, bundled in Gel Dosimetry Analysis extension)

Ethan Ulrich

DICOMPETSUVPlugin
DICOMRWVMPlugin
PETIndi C (scripted, bundled in PET-Indi C extension)
Quantitative Indices CLI (cli, bundled in PET-Indi C extension)
Quantitative Indices Tool (scripted, bundled in PET-Indi C extension)
SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)

Eugene Kholmovski

CMRToolkit Inhomogeneity Correction (cli, bundled in Cardiac MRI Toolkit extension)

ez

DWIJoint Rician LMMSEFilter (cli, built-in)
DWIRician LMMSEFilter (cli, built-in)
DWIUnbiased Non Local Means Filter (cli, built-in)

Fotis Drakopoulos

Body Centric Cubic Mesh (cli, bundled in CBC 3D I2MConversion extension)
Mesh Compression (cli, bundled in CBC 3D I2MConversion extension)
PBNRR (cli, bundled in PBNRR extension)

Francois Budin

Developer Tools For Extensions (scripted, bundled in Developer Tools For Extensions extension)
DTIAtlas Fiber Analyzer (cli, bundled in DTIAtlas Fiber Analyzer extension)
dtitractstat (cli, bundled in DTIAtlas Fiber Analyzer extension)
Intensity Segmenter (cli, bundled in Intensity Segmenter extension)
Mesh To Label Map (cli, bundled in Mesh To Label Map extension)
Resample DTIVolume (cli, built-in)
Resample Scalar Vector DWIVolume (cli, built-in)

Franklin King

Collect Fiducials (loadable, bundled in Slicer IGT extension)
Pivot Calibration (loadable, bundled in Slicer IGT extension)
Plus Remote (scripted, bundled in Slicer IGT extension)
Scoliosis Monitoring (scripted, bundled in Scoliosis extension)
Spinal Curvature Measurement (scripted, bundled in Scoliosis extension)
Transform Fusion (loadable, bundled in Slicer IGT extension)
Transforms (loadable, built-in)

g

Dicom Rt Import Export Plugin

Gopalkrishna Veni

CMRToolkit LASegmentation Graph Cuts (cli, bundled in Cardiac MRI Toolkit extension)

Greg Gardner

CMRToolkit PVAntrum Cut (cli, bundled in Cardiac MRI Toolkit extension)
CMRToolkit Registration (scripted, bundled in Cardiac MRI Toolkit extension)
CMRToolkit Registration BRAINSFit (scripted, bundled in Cardiac MRI Toolkit extension)
LAScar Segmenter (cli, bundled in LAScar Segmenter extension)

Greg Harris

BRAINSDemon Warp (cli, built-in)
BRAINSResample (cli, built-in)
VBRAINSDemon Warp (cli, built-in)

Gregory Sharp

Dicom Sro Export (scripted, bundled in Slicer RT extension)
Plm Register (scripted, bundled in Slicer RT extension)

Guido Gerig

dtitractstat (cli, bundled in DTIAtlas Fiber Analyzer extension)
Extract Skeleton (cli, built-in)

Guillaume Pernelle

i Gyne (scripted, bundled in i Gyne extension)
Needle Finder (scripted, bundled in Needle Finder extension)

H

Dicom Rt Import Export Plugin

Hans J. Johnson

BRAINSDemon Warp (cli, built-in)
BRAINSFit (cli, built-in)
BRAINSROIAuto (cli, built-in)
BRAINSTransform Convert (cli, built-in)
VBRAINSDemon Warp (cli, built-in)

Hans Johnson

BRAINSResample (cli, built-in)
BRAINSResize (cli, built-in)
Cardiac Agatston Measures (scripted, bundled in Cardiac Agaston Measures extension)
DWIConvert (cli, built-in)
PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
UKFTractography (cli, bundled in UKFTractography extension)

hans-johnson -at- uiowa.edu

BRAINSFit (cli, built-in)
BRAINSROIAuto (cli, built-in)

http://www.psychiatry.uiowa.edu

BRAINSFit (cli, built-in)
BRAINSROIAuto (cli, built-in)

i

Dicom Rt Import Export Plugin

Idk

d Pet Brain Quantification (scripted, bundled in Pet Spect Analysis extension)

Ipek Oguz

Convert VTK (cli, bundled in UKFTractography extension)
Mesh To Label Map (cli, bundled in Mesh To Label Map extension)
UKFTractography (cli, bundled in UKFTractography extension)

Ivan Kolesov

Carrera Slice (loadable, bundled in Carrera Slice extension)
Carrera Slice Effect (scripted, bundled in Carrera Slice extension)
Fast Grow Cut Effect (scripted, bundled in Fast Grow Cut Effect extension)

Jaime Garcia Guevara

Breach Warning (loadable, bundled in Slicer IGT extension)
Markups To Model (loadable, bundled in Slicer IGT extension)

Jaime Garcia-Guevara

Watchdog (loadable, bundled in Slicer IGT extension)

Jan Egger

i Gyne (scripted, bundled in i Gyne extension)

Jayashree Kalpathy-Cramer

T1 Mapping (scripted, bundled in T1 Mapping extension)

Jayender Jagadeesan

Heterogeneity CAD (scripted, bundled in Open CAD extension)
Segment CAD (scripted, bundled in Open CAD extension)
Tracker Stabilizer (loadable, bundled in Tracker Stabilizer extension)

Jean-Baptiste Berger

Data Store (loadable, built-in)
DTIAtlas Fiber Analyzer (cli, bundled in DTIAtlas Fiber Analyzer extension)
Fiber Compare (cli, bundled in DTIAtlas Fiber Analyzer extension)
Merge Stat With Fiber (cli, bundled in DTIAtlas Fiber Analyzer extension)

Jean-Christophe Fillion-Robin

CLI4Test
Data Store (loadable, built-in)
DTINot Reproducible Issue3977
Fast Grow Cut (loadable, bundled in Fast Grow Cut Effect extension)
Fast Grow Cut Segmenter (loadable, bundled in Carrera Slice extension)
fiber visibility crash2438
Matlab Commander (cli, bundled in Matlab Bridge extension)
Matlab Module Generator (loadable, bundled in Matlab Bridge extension)
Multi Volume Explorer (loadable, built-in)
Multi Volume Importer (scripted, built-in)
Sample Data (scripted, built-in)
Simple Filters (scripted, built-in)
Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)
Transforms (loadable, built-in)
View Controllers (loadable, built-in)
Welcome (loadable, built-in)

Jennifer Andrea

Gel Dosimetry Analysis (scripted, bundled in Gel Dosimetry Analysis extension)
Vff File Reader (loadable, bundled in Slicer RT extension)

Jessica Forbes

Cardiac Agatston Measures (scripted, bundled in Cardiac Agaston Measures extension)

Jim Miller

Charting (scripted, built-in)
Pk Modeling (cli, bundled in Pk Modeling extension)
Simple Region Growing Segmentation (cli, built-in)
Slice Link Logic (scripted, built-in)
Slicer4Minute (scripted, built-in)
View Controllers (loadable, built-in)
View Controllers Slice Interpolation Bug1926

Johan Andruejol

Units (loadable, built-in)

John Buatti

PETIndi C (scripted, bundled in PET-Indi C extension)
Quantitative Indices CLI (cli, bundled in PET-Indi C extension)
Quantitative Indices Tool (scripted, bundled in PET-Indi C extension)
SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)

John Evans

Pk Modeling (cli, bundled in Pk Modeling extension)

Jonathan Bronson

Cleaver CLI (cli, bundled in Cleaver Extension extension)

Jorge Onieva

CIP Body Composition (scripted, bundled in Chest Imaging Platform extension)
CIP Common (scripted, bundled in Chest Imaging Platform extension)
CIP Get Image (scripted, bundled in Chest Imaging Platform extension)
Picasa Snap (scripted, bundled in Chest Imaging Platform extension)

Josh Cates

CMRToolkit Automatic Left Atrial Scar (cli, bundled in Cardiac MRI Toolkit extension)
CMRToolkit Axial Dilate (cli, bundled in Cardiac MRI Toolkit extension)
CMRToolkit Boolean REMOVEFilter (cli, bundled in Cardiac MRI Toolkit extension)
CMRToolkit Connected Threshold Filter (cli, bundled in Cardiac MRI Toolkit extension)
CMRToolkit Inhomogeneity Correction (cli, bundled in Cardiac MRI Toolkit extension)
CMRToolkit Isolated Connected Filter (cli, bundled in Cardiac MRI Toolkit extension)
CMRToolkit LASegmentation Graph Cuts (cli, bundled in Cardiac MRI Toolkit extension)
CMRToolkit PVAntrum Cut (cli, bundled in Cardiac MRI Toolkit extension)
CMRToolkit Registration (scripted, bundled in Cardiac MRI Toolkit extension)
CMRToolkit Registration BRAINSFit (scripted, bundled in Cardiac MRI Toolkit extension)
CMRToolkit Wizard (scripted, bundled in Cardiac MRI Toolkit extension)
Label Map Smoothing (cli, built-in)
LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
LASegmentation Workflow (scripted, bundled in Cardiac MRI Toolkit extension)
Scar Visualization (scripted, bundled in Cardiac MRI Toolkit extension)

Joy Matsui

DWIConvert (cli, built-in)

Julien Finet

Cameras (loadable, built-in)
Colors (loadable, built-in)
Data (loadable, built-in)
Double Arrays (loadable, built-in)
Event Broker
Image Maker (cli, bundled in Image Maker extension)
Models (loadable, built-in)
Multi Volume Explorer (loadable, built-in)
Multi Volume Importer (scripted, built-in)
Scene Performance (scripted, built-in)
Threshold Scalar Volume (cli, built-in)
Tractography Display (loadable, built-in)
Transforms (loadable, built-in)
Units (loadable, built-in)
Volume Rendering (loadable, built-in)
Volumes (loadable, built-in)

Julien Jomier

Gaussian Blur Image Filter (cli, built-in)

Junichi Tokuda

Corner Annotation (scripted, bundled in Corner Annotation extension)
Curve Maker (scripted, bundled in Curve Maker extension)
Light Weight Robot IGT (loadable, bundled in Light Weight Robot IGT extension)
Path Explorer (loadable, bundled in Slicer IGT extension)
Volume Reslice Driver (loadable, bundled in Slicer IGT extension)

K

Dicom Rt Import Export Plugin

Kent Williams

BRAINSDWICleanup (cli, built-in)
BRAINSTransform Convert (cli, built-in)
Convert VTK (cli, bundled in UKFTractography extension)
DWIConvert (cli, built-in)
UKFTractography (cli, bundled in UKFTractography extension)

Kent WIlliams

BRAINSStrip Rotation (cli, built-in)

Kevin Alex

Gel Dosimetry Analysis (scripted, bundled in Gel Dosimetry Analysis extension)

Kevin Wang

Colors Scalar Bar Self Test
Dicom Rt Import Export (loadable, bundled in Slicer RT extension)
Dicom Sro Export (scripted, bundled in Slicer RT extension)
Dicom Sro Import (loadable, bundled in Slicer RT extension)
Dicom Sro Import Plugin
Dose Accumulation (loadable, bundled in Slicer RT extension)
Dose Comparison (loadable, bundled in Slicer RT extension)
Dose Volume Histogram (loadable, bundled in Slicer RT extension)
Isodose (loadable, bundled in Slicer RT extension)
Matlab Commander (cli, bundled in Matlab Bridge extension)
Matlab Module Generator (loadable, bundled in Matlab Bridge extension)
Segment Comparison (loadable, bundled in Slicer RT extension)
Segment Morphology (loadable, bundled in Slicer RT extension)
Sequences (loadable, bundled in Sequences extension)

Kilian M Pohl

Island Removal (cli, built-in)

Kilian Pohl

Annotations (loadable, built-in)
Change Tracker (scripted, bundled in Change Tracker extension)
EMSegment (loadable, built-in)
EMSegment Command Line (cli, built-in)
Scene Views (loadable, built-in)

Koichiro Murakami

Corner Annotation (scripted, bundled in Corner Annotation extension)

Kyle Sunderl

Dvh Comparison (scripted, bundled in Slicer RT extension)

L

Dicom Rt Import Export Plugin

Lauren Barber

i Gyne (scripted, bundled in i Gyne extension)
Needle Finder (scripted, bundled in Needle Finder extension)

Lauren J. O'Donnell

DTINot Reproducible Issue3977

Lauren O'Donnell

Fiber Bundle Label Select (cli, built-in)
Probe Volume With Model (cli, built-in)

Laurent Chauvin

Curve Maker (scripted, bundled in Curve Maker extension)
Path Explorer (loadable, bundled in Slicer IGT extension)
Tracker Stabilizer (loadable, bundled in Tracker Stabilizer extension)

Liangjia Zhu

Carrera Slice Effect (scripted, bundled in Carrera Slice extension)
Fast Grow Cut Effect (scripted, bundled in Fast Grow Cut Effect extension)
LAScar Segmenter (cli, bundled in LAScar Segmenter extension)

Luca Antiga

Centerline Computation (scripted, bundled in VMTK extension)
Level Set Segmentation (scripted, bundled in VMTK extension)
Surface Toolbox (scripted, built-in)
Vesselness Filtering (scripted, bundled in VMTK extension)

Luping Fang

Gyro Guide (scripted, bundled in Gyro Guide extension)

Marc Niethammer

DWIRician LMMSEFilter (cli, built-in)

Mark Scully

DWIConvert (cli, built-in)

Markus Van Tol

Longitudinal PETCT (loadable, bundled in Longitudinal PETCT extension)
PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)

Markus van Tol

PETIndi C (scripted, bundled in PET-Indi C extension)
PETTumor Segmentation (loadable, bundled in PETTumor Segmentation extension)
PETTumor Segmentation Effect (scripted, bundled in PETTumor Segmentation extension)
Quantitative Indices CLI (cli, bundled in PET-Indi C extension)
Quantitative Indices Tool (scripted, bundled in PET-Indi C extension)
SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)

Martin Styner

Convert VTK (cli, bundled in UKFTractography extension)
dtitractstat (cli, bundled in DTIAtlas Fiber Analyzer extension)
Extract Skeleton (cli, built-in)
UKFTractography (cli, bundled in UKFTractography extension)

Mason Winsauer

Apply Matrix (cli, bundled in CMFreg extension)
Downsize (cli, bundled in CMFreg extension)
Growing (cli, bundled in CMFreg extension)
Label Addition (cli, bundled in CMFreg extension)
Label Extraction (cli, bundled in CMFreg extension)
Mask Creation (cli, bundled in CMFreg extension)
Non Growing (cli, bundled in CMFreg extension)

Matt Lougheed

Volume Clip With Model (scripted, bundled in Volume Clip extension)

Mattea Welch

Gel Dosimetry Analysis (scripted, bundled in Gel Dosimetry Analysis extension)

Matthew Holden

Breach Warning (loadable, bundled in Slicer IGT extension)
Fiducial Registration Wizard (loadable, bundled in Slicer IGT extension)
Python Metrics Calculator (scripted, bundled in Perk Tutor extension)
Sequences (loadable, bundled in Sequences extension)

Matthew S. Holden

Perk Evaluator (loadable, bundled in Perk Tutor extension)
Transform Recorder (loadable, bundled in Perk Tutor extension)
Workflow Segmentation (loadable, bundled in Perk Tutor extension)

Matthew Woehlke

Extension Wizard (scripted, built-in)

Michael Jeulin-Lagarrigue

Reformat (loadable, built-in)

n

Dicom Rt Import Export Plugin

N

Dicom Rt Import Export Plugin

Nabgha Fahrat

i Gyne (scripted, bundled in i Gyne extension)
Needle Finder (scripted, bundled in Needle Finder extension)

Neuro Image Resarch

Apply Matrix (cli, bundled in CMFreg extension)
Downsize (cli, bundled in CMFreg extension)
Growing (cli, bundled in CMFreg extension)
Label Addition (cli, bundled in CMFreg extension)
Label Extraction (cli, bundled in CMFreg extension)
Mask Creation (cli, bundled in CMFreg extension)
Non Growing (cli, bundled in CMFreg extension)

Nicholas Herlambang

JRC2013Vis

Nick Tustison

N4ITKBias Field Correction (cli, built-in)

Nicole Aucoin

ACPCTransform (cli, built-in)
Add Many Markups Fiducial Test
Annotations (loadable, built-in)
Cast Scalar Volume (cli, built-in)
Colors (loadable, built-in)
Colors Scalar Bar Self Test
Data (loadable, built-in)
Fiducial Layout Switch Bug1914
Grayscale Model Maker (cli, built-in)
Markups (loadable, built-in)
Markups In Compare Viewers Self Test
Markups In Views Self Test
Mask Scalar Volume (cli, built-in)
Merge Models (cli, built-in)
Model Maker (cli, built-in)
Models (loadable, built-in)
Model To Label Map (cli, built-in)
Neurosurgical Planning Tutorial Markups Self Test
PETStandard Uptake Value Computation (cli, built-in)
PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
Reporting (loadable, bundled in Reporting extension)
Scene Views (loadable, built-in)
SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
Threshold Scalar Volume (cli, built-in)
Volume Rendering Scene Close (scripted, built-in)
Volumes (loadable, built-in)

Nikos Chrisochoides

Body Centric Cubic Mesh (cli, bundled in CBC 3D I2MConversion extension)
Mesh Compression (cli, bundled in CBC 3D I2MConversion extension)
PBNRR (cli, bundled in PBNRR extension)

o

Dicom Rt Import Export Plugin

Olivier Clatz

PBNRR (cli, bundled in PBNRR extension)

P

Dicom Rt Import Export Plugin

Paolo Zaffino

Plastimatch Py (loadable, bundled in Slicer RT extension)

Pat Marion

Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)

Patricio Vela

Carrera Slice Effect (scripted, bundled in Carrera Slice extension)

Paul Mercea

Longitudinal PETCT (loadable, bundled in Longitudinal PETCT extension)

Pengdong Xiao

Intensity Segmenter (cli, bundled in Intensity Segmenter extension)

Peter Black

Change Tracker (scripted, bundled in Change Tracker extension)

Peter Karasev

Carrera Slice (loadable, bundled in Carrera Slice extension)
Carrera Slice Effect (scripted, bundled in Carrera Slice extension)

Peter Savadjiev

Finsler Backtracing (cli, bundled in Finsler Tractography extension)
Finsler Tractography (cli, bundled in Finsler Tractography extension)
UKFTractography (cli, bundled in UKFTractography extension)

Pierre Seroul

Extract Skeleton (cli, built-in)

Pietro Nardelli

Airway Segmentation (scripted, bundled in Airway Segmentation extension)
Airway Segmentation CLI (cli, bundled in Airway Segmentation extension)
Interactive Lobe Segmentation (scripted, bundled in Chest Imaging Platform extension)
Particles Display (loadable, bundled in Chest Imaging Platform extension)
Region Type (loadable, bundled in Chest Imaging Platform extension)

Please direct questions or suggestions to http://groups.google.com/group/plastimatch

plastimatch slicer bspline (cli, bundled in Slicer RT extension)
plastimatch slicer landwarp (cli, bundled in Slicer RT extension)

Polina Goll

EMSegment Command Line (cli, built-in)

Q

Dicom Rt Import Export Plugin

Qing Pan

Gyro Guide (scripted, bundled in Gyro Guide extension)

r

Dicom Rt Import Export Plugin

Raul San Jose

Diffusion Tensor Scalar Measurements (cli, built-in)
DWITo DTIEstimation (cli, built-in)
Tractography Label Map Seeding (cli, built-in)

Reinhard Beichel

Quantitative Indices CLI (cli, bundled in PET-Indi C extension)
Quantitative Indices Tool (scripted, bundled in PET-Indi C extension)
SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)

Reinhard R. Beichel

PETIndi C (scripted, bundled in PET-Indi C extension)

Rob MacLeod

CMRToolkit Automatic Left Atrial Scar (cli, bundled in Cardiac MRI Toolkit extension)
CMRToolkit Axial Dilate (cli, bundled in Cardiac MRI Toolkit extension)
CMRToolkit Boolean REMOVEFilter (cli, bundled in Cardiac MRI Toolkit extension)
CMRToolkit Connected Threshold Filter (cli, bundled in Cardiac MRI Toolkit extension)
CMRToolkit Inhomogeneity Correction (cli, bundled in Cardiac MRI Toolkit extension)
CMRToolkit Isolated Connected Filter (cli, bundled in Cardiac MRI Toolkit extension)
CMRToolkit LASegmentation Graph Cuts (cli, bundled in Cardiac MRI Toolkit extension)
CMRToolkit PVAntrum Cut (cli, bundled in Cardiac MRI Toolkit extension)
CMRToolkit Registration (scripted, bundled in Cardiac MRI Toolkit extension)
CMRToolkit Registration BRAINSFit (scripted, bundled in Cardiac MRI Toolkit extension)
CMRToolkit Wizard (scripted, bundled in Cardiac MRI Toolkit extension)
LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
LASegmentation Workflow (scripted, bundled in Cardiac MRI Toolkit extension)
Scar Visualization (scripted, bundled in Cardiac MRI Toolkit extension)

Ron Kikinis

ACPCTransform (cli, built-in)
Cast Scalar Volume (cli, built-in)
Change Tracker (scripted, bundled in Change Tracker extension)
Crop Volume (loadable, built-in)
Fast Grow Cut Effect (scripted, bundled in Fast Grow Cut Effect extension)
Mask Scalar Volume (cli, built-in)
Merge Models (cli, built-in)
Model Maker (cli, built-in)
Multi Volume Explorer (loadable, built-in)
Multi Volume Importer (scripted, built-in)
N4ITKBias Field Correction (cli, built-in)
PETStandard Uptake Value Computation (cli, built-in)
PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
Robust Statistics Segmenter (cli, built-in)
Surface Toolbox (scripted, built-in)
SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
Threshold Scalar Volume (cli, built-in)
View Controllers (loadable, built-in)
Volume Rendering (loadable, built-in)

Ross Whitaker

CMRToolkit LASegmentation Graph Cuts (cli, bundled in Cardiac MRI Toolkit extension)
Label Map Smoothing (cli, built-in)

Ruifeng Chen

Gyro Guide (scripted, bundled in Gyro Guide extension)

S

i Gyne (scripted, bundled in i Gyne extension)
Needle Finder (scripted, bundled in Needle Finder extension)

s

Dicom Rt Import Export Plugin

Salma Bengali

CMRToolkit Axial Dilate (cli, bundled in Cardiac MRI Toolkit extension)
CMRToolkit Boolean REMOVEFilter (cli, bundled in Cardiac MRI Toolkit extension)
CMRToolkit Connected Threshold Filter (cli, bundled in Cardiac MRI Toolkit extension)
CMRToolkit Isolated Connected Filter (cli, bundled in Cardiac MRI Toolkit extension)
CMRToolkit LASegmentation Graph Cuts (cli, bundled in Cardiac MRI Toolkit extension)
CMRToolkit PVAntrum Cut (cli, bundled in Cardiac MRI Toolkit extension)
CMRToolkit Registration (scripted, bundled in Cardiac MRI Toolkit extension)
CMRToolkit Registration BRAINSFit (scripted, bundled in Cardiac MRI Toolkit extension)
CMRToolkit Wizard (scripted, bundled in Cardiac MRI Toolkit extension)
LASegmentation Workflow (scripted, bundled in Cardiac MRI Toolkit extension)
Scar Visualization (scripted, bundled in Cardiac MRI Toolkit extension)

Sam Song

i Gyne (scripted, bundled in i Gyne extension)

Santiago Aja Fern

DWIJoint Rician LMMSEFilter (cli, built-in)
DWIRician LMMSEFilter (cli, built-in)
DWIUnbiased Non Local Means Filter (cli, built-in)

Sebastian Tauscher

Light Weight Robot IGT (loadable, bundled in Light Weight Robot IGT extension)

Sebastien Barré

Cameras (loadable, built-in)

Sebastien Barre

EMSegment Command Line (cli, built-in)

Shigeyuki Naka

Corner Annotation (scripted, bundled in Corner Annotation extension)

Soichiro Tani

Corner Annotation (scripted, bundled in Corner Annotation extension)

Sonia Pujol

DTIexport (cli, built-in)
DTIimport (cli, built-in)

Stefan Lienhard

Convert VTK (cli, bundled in UKFTractography extension)
UKFTractography (cli, bundled in UKFTractography extension)

Stephen Aylward

Extract Skeleton (cli, built-in)
Gaussian Blur Image Filter (cli, built-in)

Stephen R Aylward

Expert Automated Registration (cli, built-in)

Steve Pieper

Atlas Tests
Binary Watershed Effect (scripted, bundled in IASEM extension)
Carrera Slice Effect (scripted, bundled in Carrera Slice extension)
Centerline Computation (scripted, bundled in VMTK extension)
Compare Volumes (scripted, bundled in CMFreg extension)
Data Probe (scripted, built-in)
DICOM (scripted, built-in)
DICOMDiffusion Volume Plugin
DICOMLongitudinal PETCTPlugin
DICOMScalar Volume Plugin
DICOMSlicer Data Bundle Plugin
Editor (scripted, built-in)
Endoscopy (scripted, built-in)
fiber visibility crash2438
Fiber Bundle To Label Map (scripted, built-in)
Label Statistics (scripted, built-in)
Landmark Registration (scripted, bundled in CMFreg extension)
Level Set Segmentation (scripted, bundled in VMTK extension)
Multi Volume Explorer (loadable, built-in)
Multi Volume Importer (scripted, built-in)
Performance Tests
PETTumor Segmentation Effect (scripted, bundled in PETTumor Segmentation extension)
Reporting (loadable, bundled in Reporting extension)
RSNA2012Prostate Demo
RSNAQuant Tutorial
RSNAVis Tutorial
Sample Data (scripted, built-in)
scene Import2428
Self Tests
Simple Filters (scripted, built-in)
slicer Close Crash Bug2590
Slicer MRBTest
Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)
Threshold Threading Test
Vector To Scalar Volume (scripted, built-in)
Vesselness Filtering (scripted, bundled in VMTK extension)
View Controllers (loadable, built-in)
Volumes (loadable, built-in)
Xnat Slicer (scripted, bundled in XNATSlicer extension)

Sunil Kumar

Xnat Slicer (scripted, bundled in XNATSlicer extension)

Sylvain Gouttard

dtitractstat (cli, bundled in DTIAtlas Fiber Analyzer extension)

T

Dicom Rt Import Export Plugin

t

Dicom Rt Import Export Plugin

Tamas Ungi

Breach Warning (loadable, bundled in Slicer IGT extension)
Breach Warning Self Test
Collect Fiducials (loadable, bundled in Slicer IGT extension)
Create Models (loadable, bundled in Slicer IGT extension)
Fiducial Registration Wizard (loadable, bundled in Slicer IGT extension)
Fiducials To Model Registration (scripted, bundled in Slicer IGT extension)
Model Registration (scripted, bundled in Slicer IGT extension)
Open IGTLink Remote (loadable, bundled in Slicer IGT extension)
Perk Evaluator (loadable, bundled in Perk Tutor extension)
Pivot Calibration (loadable, bundled in Slicer IGT extension)
Plus Remote (scripted, bundled in Slicer IGT extension)
Python Metrics Calculator (scripted, bundled in Perk Tutor extension)
Scoliosis Monitoring (scripted, bundled in Scoliosis extension)
Spinal Curvature Measurement (scripted, bundled in Scoliosis extension)
Transform Fusion (loadable, bundled in Slicer IGT extension)
Transform Recorder (loadable, bundled in Perk Tutor extension)
Ultrasound Snapshots (loadable, bundled in Slicer IGT extension)
Volume Reslice Driver (loadable, bundled in Slicer IGT extension)
Watchdog (loadable, bundled in Slicer IGT extension)
Watchdog Self Test
Workflow Segmentation (loadable, bundled in Perk Tutor extension)

the University of North Carolina at Chapel Hill

Intensity Segmenter (cli, bundled in Intensity Segmenter extension)

Thomas Lawson

Wasp (scripted, bundled in Wasp extension)

Tina Kapur

i Gyne (scripted, bundled in i Gyne extension)
Needle Finder (scripted, bundled in Needle Finder extension)

Tobias Penzkofer

i Gyne (scripted, bundled in i Gyne extension)

Tohru Tani

Corner Annotation (scripted, bundled in Corner Annotation extension)

u

Dicom Rt Import Export Plugin

U

Dicom Rt Import Export Plugin

UNC Medical School

Apply Matrix (cli, bundled in CMFreg extension)
Downsize (cli, bundled in CMFreg extension)
Growing (cli, bundled in CMFreg extension)
Label Addition (cli, bundled in CMFreg extension)
Label Extraction (cli, bundled in CMFreg extension)
Mask Creation (cli, bundled in CMFreg extension)
Non Growing (cli, bundled in CMFreg extension)

UofM School Of Dentistry

Growing (cli, bundled in CMFreg extension)

UofM School of Dentistry

Apply Matrix (cli, bundled in CMFreg extension)
Downsize (cli, bundled in CMFreg extension)
Label Addition (cli, bundled in CMFreg extension)
Label Extraction (cli, bundled in CMFreg extension)
Mask Creation (cli, bundled in CMFreg extension)
Non Growing (cli, bundled in CMFreg extension)

v

Dicom Rt Import Export Plugin

Vince Magnotta

DWIConvert (cli, built-in)

Vincent A. Magnotta

BRAINSLabel Stats (cli, built-in)

Vincent Magnotta

BRAINSResample (cli, built-in)

Vinicius Boen

Apply Matrix (cli, bundled in CMFreg extension)
Downsize (cli, bundled in CMFreg extension)
Growing (cli, bundled in CMFreg extension)
Label Addition (cli, bundled in CMFreg extension)
Label Extraction (cli, bundled in CMFreg extension)
Mask Creation (cli, bundled in CMFreg extension)
Non Growing (cli, bundled in CMFreg extension)
Surface Registration (scripted, bundled in CMFreg extension)

Vivek Narayan

Heterogeneity CAD (scripted, bundled in Open CAD extension)
Segment CAD (scripted, bundled in Open CAD extension)

W

Dicom Rt Import Export Plugin

Wendy Plesniak

Annotations (loadable, built-in)
PETStandard Uptake Value Computation (cli, built-in)
PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
Scene Views (loadable, built-in)
SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
View Controllers (loadable, built-in)
Welcome (loadable, built-in)

Women's Hopsital

Lung Registration (scripted, bundled in Chest Imaging Platform extension)

Women's Hospital

CIP Body Composition (scripted, bundled in Chest Imaging Platform extension)
CIP Common (scripted, bundled in Chest Imaging Platform extension)
CIP Get Image (scripted, bundled in Chest Imaging Platform extension)
Classify Fissure Particles (cli, bundled in Chest Imaging Platform extension)
Compute Feature Strength (cli, bundled in Chest Imaging Platform extension)
Compute Fissure Feature Vectors (cli, bundled in Chest Imaging Platform extension)
Convert Dicom (cli, bundled in Chest Imaging Platform extension)
Enhance Fissures In Image (cli, bundled in Chest Imaging Platform extension)
Filter Airway Particle Data (cli, bundled in Chest Imaging Platform extension)
Filter Fissure Particle Data (cli, bundled in Chest Imaging Platform extension)
Filter Vessel Particle Data (cli, bundled in Chest Imaging Platform extension)
Generate Lesion Segmentation (cli, bundled in Chest Imaging Platform extension)
Generate Partial Lung Label Map (cli, bundled in Chest Imaging Platform extension)
Generate Stenciled Label Map From Particles (cli, bundled in Chest Imaging Platform extension)
Picasa Snap (scripted, bundled in Chest Imaging Platform extension)
Read NRRDs Write VTK (cli, bundled in Chest Imaging Platform extension)
Read Vida Write CIP (cli, bundled in Chest Imaging Platform extension)
Read Write Region And Type Points (cli, bundled in Chest Imaging Platform extension)
Remove Chest Type From Label Map Using Particles (cli, bundled in Chest Imaging Platform extension)
Remove Particles From Particles Data Set (cli, bundled in Chest Imaging Platform extension)
Segment Lung Lobes (cli, bundled in Chest Imaging Platform extension)
Transfer Field Data To From Point Data (cli, bundled in Chest Imaging Platform extension)

women's hospital

Compute Cross Sectional Area (cli, bundled in Chest Imaging Platform extension)
Compute Distance Map (cli, bundled in Chest Imaging Platform extension)
Compute Intensity Statistics (cli, bundled in Chest Imaging Platform extension)
Convert Label Map Value To Chest Region Chest Type (cli, bundled in Chest Imaging Platform extension)
Crop Lung (cli, bundled in Chest Imaging Platform extension)
Evaluate Lung Lobe Segmentation Results (cli, bundled in Chest Imaging Platform extension)
Extract Chest Label Map (cli, bundled in Chest Imaging Platform extension)
Extract Particles From Chest Region Chest Type (cli, bundled in Chest Imaging Platform extension)
Filter Connected Components (cli, bundled in Chest Imaging Platform extension)
Fit Lobe Surface Models To Particle Data (cli, bundled in Chest Imaging Platform extension)
Generate Atlas Convex Hull (cli, bundled in Chest Imaging Platform extension)
Generate Distance Map From Label Map (cli, bundled in Chest Imaging Platform extension)
Generate Image Sub Volumes (cli, bundled in Chest Imaging Platform extension)
Generate Lobe Surface Models (cli, bundled in Chest Imaging Platform extension)
Generate Median Filtered Image (cli, bundled in Chest Imaging Platform extension)
Generate Otsu Lung Cast (cli, bundled in Chest Imaging Platform extension)
Generate Region Histograms And Parenchyma Phenotypes (cli, bundled in Chest Imaging Platform extension)
Get Structures In Label Map (cli, bundled in Chest Imaging Platform extension)
Get Transformation Kappa (cli, bundled in Chest Imaging Platform extension)
Get Transformation Kappa2D (cli, bundled in Chest Imaging Platform extension)
Get Transformation Similarity Metric (cli, bundled in Chest Imaging Platform extension)
Label Map From Region And Type Points (cli, bundled in Chest Imaging Platform extension)
Label Particles By Chest Region Chest Type (cli, bundled in Chest Imaging Platform extension)
Mask Out Label Map Structures (cli, bundled in Chest Imaging Platform extension)
Merge Chest Label Maps (cli, bundled in Chest Imaging Platform extension)
Merge Particle Data Sets (cli, bundled in Chest Imaging Platform extension)
Perform Morphological (cli, bundled in Chest Imaging Platform extension)
Perturb Particles (cli, bundled in Chest Imaging Platform extension)
Read Dicom Write Tags (cli, bundled in Chest Imaging Platform extension)
Read VTKWrite NRRDs (cli, bundled in Chest Imaging Platform extension)
Read Write Image Data (cli, bundled in Chest Imaging Platform extension)
Register CT (cli, bundled in Chest Imaging Platform extension)
Register Label Maps (cli, bundled in Chest Imaging Platform extension)
Register Lung Atlas (cli, bundled in Chest Imaging Platform extension)
Remap Label Map (cli, bundled in Chest Imaging Platform extension)
Resample CT (cli, bundled in Chest Imaging Platform extension)
Resample Label Map (cli, bundled in Chest Imaging Platform extension)
Rescale Label Map (cli, bundled in Chest Imaging Platform extension)
Scour Particle Data (cli, bundled in Chest Imaging Platform extension)
Split Left Lung Right Lung (cli, bundled in Chest Imaging Platform extension)

Women's hospital

Convert Chest Region Chest Type To Label Map Value (cli, bundled in Chest Imaging Platform extension)
Generate Binary Thinning3D (cli, bundled in Chest Imaging Platform extension)
Generate NLMFiltered Image (cli, bundled in Chest Imaging Platform extension)
Generate Overlay Images (cli, bundled in Chest Imaging Platform extension)
Quality Control (cli, bundled in Chest Imaging Platform extension)

Xiao Da

T1 Mapping (scripted, bundled in T1 Mapping extension)

Xiaodong Tao

DWIConvert (cli, built-in)
Model To Label Map (cli, built-in)
Skull Stripper (cli, bundled in Skull Stripper extension)

Xiaojun Chen

i Gyne (scripted, bundled in i Gyne extension)

y Wells

i Gyne (scripted, bundled in i Gyne extension)
Needle Finder (scripted, bundled in Needle Finder extension)

Yanling Liu

Volume Rendering (loadable, built-in)

Yi Gao

Carrera Slice Effect (scripted, bundled in Carrera Slice extension)
Fast Grow Cut Effect (scripted, bundled in Fast Grow Cut Effect extension)
i Gyne (scripted, bundled in i Gyne extension)
LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
Needle Finder (scripted, bundled in Needle Finder extension)
Robust Statistics Segmenter (cli, built-in)

Yinglin Lee

Test Grid Transform Registration (cli, built-in)

Yingxuan Zhu

Pk Modeling (cli, bundled in Pk Modeling extension)

Yinpeng Li

Convert VTK (cli, bundled in UKFTractography extension)
UKFTractography (cli, bundled in UKFTractography extension)

Yixun Liu

Body Centric Cubic Mesh (cli, bundled in CBC 3D I2MConversion extension)
Mesh Compression (cli, bundled in CBC 3D I2MConversion extension)
PBNRR (cli, bundled in PBNRR extension)

Yogesh Rathi

Convert VTK (cli, bundled in UKFTractography extension)
UKFTractography (cli, bundled in UKFTractography extension)

Yong Zhang

Annotations (loadable, built-in)

Yumin Yuan

EMSegment Command Line (cli, built-in)

Yundi Shi

Convert VTK (cli, bundled in UKFTractography extension)
dtitractstat (cli, bundled in DTIAtlas Fiber Analyzer extension)
UKFTractography (cli, bundled in UKFTractography extension)

@@ Line 2: / Line 2: @@
 * [[#Modules_by_contributing_individual|Modules by contributing individual]]
 = Modules by contributing individual =
 contributing individuals:
 * [[#|']]
 * [[#.29|)]]
@@ Line 50: / Line 50: @@
 * [[#Dan_Marcus|Dan Marcus]]    <small>(Washington University in St. Louis)</small>
 * [[#Daniel_Blezek|Daniel Blezek]]    <small>(GE)</small>
-* [[#Daniel_Haehn|Daniel Haehn]]    <small>(UPenn)</small>
+* [[#Daniel_Haehn|Daniel Haehn]]    <small>(SPL, BWH, UPenn)</small>
 * [[#Danny_Perry|Danny Perry]]    <small>(Utah)</small>
 * [[#Demian_Wassermann|Demian Wassermann]]    <small>(Brigham and Women's Hospital)</small>
@@ Line 93: / Line 93: @@
 * [[#John_Evans|John Evans]]    <small>(MGH)</small>
 * [[#Jonathan_Bronson|Jonathan Bronson]]    <small>(SCI Institute)</small>
+* [[#Jorge_Onieva|Jorge Onieva]]    <small>(jonieva@bwh.harvard.edu)</small>
 * [[#Josh_Cates|Josh Cates]]    <small>(Utah)</small>
 * [[#Joy_Matsui|Joy Matsui]]    <small>(UIowa)</small>
@@ Line 179: / Line 180: @@
 * [[#T|T]]
 * [[#t|t]]
-* [[#Tamas_Ungi|Tamas Ungi]]    <small>(PerkLab, Queen's Universit)</small>
+* [[#Tamas_Ungi|Tamas Ungi]]    <small>(Queen's Universit)</small>
 * [[#the_University_of_North_Carolina_at_Chapel_Hill|the University of North Carolina at Chapel Hill]]    <small>(UNC)</small>
 * [[#Thomas_Lawson|Thomas Lawson]]    <small>(MRC Harwell, Oxfordshire)</small>
@@ Line 199: / Line 200: @@
 * [[#Wendy_Plesniak|Wendy Plesniak]]    <small>(SPL, BWH)</small>
 * [[#Women_s_Hopsital|Women's Hopsital]]
+* [[#Women_s_Hospital|Women's Hospital]]
+* [[#women_s_hospital|women's hospital]]
+* [[#Women_s_hospital|Women's hospital]]
 * [[#Xiao_Da|Xiao Da]]    <small>(MGH)</small>
 * [[#Xiaodong_Tao|Xiaodong Tao]]    <small>(GE)</small>
@@ Line 347: / Line 351: @@
 * [[Documentation/Nightly/Extensions/DTIAtlasFiberAnalyzer|dtitractstat]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small>
 == Applied Chest Imaging Laboratory ==
+* [http://www.chestimagingplatform.org CIP Body Composition]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org CIP Common]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org CIP Get Image]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Classify Fissure Particles]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Compute Cross Sectional Area]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Compute Distance Map]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Compute Feature Strength]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Compute Fissure Feature Vectors]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Compute Intensity Statistics]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Convert Chest Region Chest Type To Label Map Value]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Convert Dicom]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Convert Label Map Value To Chest Region Chest Type]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Crop Lung]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
 * [http://www.chestimagingplatform.org Emphysema Subtypes]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Enhance Fissures In Image]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Evaluate Lung Lobe Segmentation Results]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Extract Chest Label Map]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Extract Particles From Chest Region Chest Type]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Filter Airway Particle Data]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Filter Connected Components]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Filter Fissure Particle Data]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Filter Vessel Particle Data]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Fit Lobe Surface Models To Particle Data]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Generate Atlas Convex Hull]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Generate Binary Thinning3D]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Generate Distance Map From Label Map]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Generate Image Sub Volumes]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Generate Lesion Segmentation]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Generate Lobe Surface Models]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Generate Median Filtered Image]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Generate NLMFiltered Image]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Generate Otsu Lung Cast]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Generate Overlay Images]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Generate Partial Lung Label Map]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Generate Region Histograms And Parenchyma Phenotypes]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Generate Stenciled Label Map From Particles]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Get Structures In Label Map]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Get Transformation Kappa]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Get Transformation Kappa2D]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Get Transformation Similarity Metric]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Label Map From Region And Type Points]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Label Particles By Chest Region Chest Type]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
 * [http://www.chestimagingplatform.org Lung Registration]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Mask Out Label Map Structures]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Merge Chest Label Maps]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Merge Particle Data Sets]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
 * [http://www.chestimagingplatform.org Parenchyma Analysis]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Perform Morphological]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Perturb Particles]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Picasa Snap]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Quality Control]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Read Dicom Write Tags]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Read NRRDs Write VTK]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Read Vida Write CIP]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Read VTKWrite NRRDs]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Read Write Image Data]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Read Write Region And Type Points]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Register CT]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Register Label Maps]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Register Lung Atlas]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Remap Label Map]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Remove Chest Type From Label Map Using Particles]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Remove Particles From Particles Data Set]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Resample CT]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Resample Label Map]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Rescale Label Map]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Scour Particle Data]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Segment Lung Lobes]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Split Left Lung Right Lung]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Transfer Field Data To From Point Data]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
 == Artem Mamonov ==
 * [[Documentation/Nightly/Modules/T1_Mapping|T1 Mapping]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/T1_Mapping|T1 Mapping]] extension)</small>
@@ Line 399: / Line 470: @@
 * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Wizard]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 == Brigham ==
+* [http://www.chestimagingplatform.org CIP Body Composition]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org CIP Common]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org CIP Get Image]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Classify Fissure Particles]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Compute Cross Sectional Area]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Compute Distance Map]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Compute Feature Strength]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Compute Fissure Feature Vectors]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Compute Intensity Statistics]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Convert Chest Region Chest Type To Label Map Value]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Convert Dicom]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Convert Label Map Value To Chest Region Chest Type]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Crop Lung]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Enhance Fissures In Image]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Evaluate Lung Lobe Segmentation Results]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Extract Chest Label Map]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Extract Particles From Chest Region Chest Type]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Filter Airway Particle Data]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Filter Connected Components]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Filter Fissure Particle Data]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Filter Vessel Particle Data]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Fit Lobe Surface Models To Particle Data]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Generate Atlas Convex Hull]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Generate Binary Thinning3D]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Generate Distance Map From Label Map]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Generate Image Sub Volumes]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Generate Lesion Segmentation]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Generate Lobe Surface Models]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Generate Median Filtered Image]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Generate NLMFiltered Image]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Generate Otsu Lung Cast]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Generate Overlay Images]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Generate Partial Lung Label Map]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Generate Region Histograms And Parenchyma Phenotypes]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Generate Stenciled Label Map From Particles]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Get Structures In Label Map]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Get Transformation Kappa]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Get Transformation Kappa2D]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Get Transformation Similarity Metric]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Label Map From Region And Type Points]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Label Particles By Chest Region Chest Type]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
 * [http://www.chestimagingplatform.org Lung Registration]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Mask Out Label Map Structures]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Merge Chest Label Maps]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Merge Particle Data Sets]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Perform Morphological]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Perturb Particles]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Picasa Snap]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Quality Control]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Read Dicom Write Tags]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Read NRRDs Write VTK]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Read Vida Write CIP]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Read VTKWrite NRRDs]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Read Write Image Data]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Read Write Region And Type Points]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Register CT]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Register Label Maps]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Register Lung Atlas]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Remap Label Map]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Remove Chest Type From Label Map Using Particles]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Remove Particles From Particles Data Set]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Resample CT]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Resample Label Map]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Rescale Label Map]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Scour Particle Data]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Segment Lung Lobes]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Split Left Lung Right Lung]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Transfer Field Data To From Point Data]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
 == BWH ==
 * DICOMSegmentation Plugin
@@ Line 630: / Line 768: @@
 == Jonathan Bronson ==
 * [[Documentation/Nightly/Extensions/CleaverExtension|Cleaver CLI]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CleaverExtension|Cleaver Extension]] extension)</small>
+== Jorge Onieva ==
+* [http://www.chestimagingplatform.org CIP Body Composition]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org CIP Common]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org CIP Get Image]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Picasa Snap]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
 == Josh Cates ==
 * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Automatic Left Atrial Scar]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
@@ Line 1,103: / Line 1,246: @@
 == Women's Hopsital ==
 * [http://www.chestimagingplatform.org Lung Registration]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+== Women's Hospital ==
+* [http://www.chestimagingplatform.org CIP Body Composition]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org CIP Common]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org CIP Get Image]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Classify Fissure Particles]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Compute Feature Strength]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Compute Fissure Feature Vectors]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Convert Dicom]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Enhance Fissures In Image]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Filter Airway Particle Data]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Filter Fissure Particle Data]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Filter Vessel Particle Data]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Generate Lesion Segmentation]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Generate Partial Lung Label Map]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Generate Stenciled Label Map From Particles]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Picasa Snap]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Read NRRDs Write VTK]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Read Vida Write CIP]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Read Write Region And Type Points]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Remove Chest Type From Label Map Using Particles]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Remove Particles From Particles Data Set]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Segment Lung Lobes]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Transfer Field Data To From Point Data]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+== women's hospital ==
+* [http://www.chestimagingplatform.org Compute Cross Sectional Area]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Compute Distance Map]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Compute Intensity Statistics]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Convert Label Map Value To Chest Region Chest Type]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Crop Lung]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Evaluate Lung Lobe Segmentation Results]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Extract Chest Label Map]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Extract Particles From Chest Region Chest Type]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Filter Connected Components]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Fit Lobe Surface Models To Particle Data]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Generate Atlas Convex Hull]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Generate Distance Map From Label Map]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Generate Image Sub Volumes]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Generate Lobe Surface Models]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Generate Median Filtered Image]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Generate Otsu Lung Cast]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Generate Region Histograms And Parenchyma Phenotypes]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Get Structures In Label Map]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Get Transformation Kappa]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Get Transformation Kappa2D]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Get Transformation Similarity Metric]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Label Map From Region And Type Points]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Label Particles By Chest Region Chest Type]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Mask Out Label Map Structures]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Merge Chest Label Maps]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Merge Particle Data Sets]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Perform Morphological]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Perturb Particles]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Read Dicom Write Tags]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Read VTKWrite NRRDs]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Read Write Image Data]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Register CT]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Register Label Maps]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Register Lung Atlas]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Remap Label Map]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Resample CT]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Resample Label Map]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Rescale Label Map]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Scour Particle Data]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Split Left Lung Right Lung]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+== Women's hospital ==
+* [http://www.chestimagingplatform.org Convert Chest Region Chest Type To Label Map Value]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Generate Binary Thinning3D]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Generate NLMFiltered Image]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Generate Overlay Images]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+* [http://www.chestimagingplatform.org Quality Control]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
 == Xiao Da ==
 * [[Documentation/Nightly/Modules/T1_Mapping|T1 Mapping]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/T1_Mapping|T1 Mapping]] extension)</small>

Difference between revisions of "Documentation/Nightly/ModuleExtensionListing/Modules by contributing individual"

Revision as of 11:40, 9 June 2015

Modules by contributing individual

'

)

A

a

Adam Rankin

Akila Viswanathan

Alan Morris

Alex Yarmakovich

Alex Yarmarkovich

Ali Ghayoor

Alireza Mehrtash

Allen Tannenbaum

Amelie Meyer

Analysis Laboratory

Andras Lasso

Andreas Freudling

Andrey Fedorov

Andriy Fedorov

Andriy Kot

Anonymous

Antonio Damato

Antonio Tristan Vega

Anuja Sharma

Applied Chest Imaging Laboratory

Artem Mamonov

Atsushi Yamada

b

Beatriz Paniagua from Department of Orthodontics

Benjamin Long

Benjamin Yvernault

Bill Lorensen

Brad Davis

Bradley Lowekamp

Brian Zenger

Brigham

BWH

C

Carl-Fredrik Westin

Carl-Fredrik Westin. The directional iterators were contributed by Luis Ibanez

Casey B Goodlett

Charles Marion

Christian Bauer

Christian Baumgartner

Csaba Pinter

d

Dan Marcus

Daniel Blezek

Daniel Haehn

Danny Perry

Demian Wassermann

Dirk Padfield

Dominik Meier

e

er

Ethan Ulrich

Eugene Kholmovski

ez

Fotis Drakopoulos

Francois Budin

Franklin King

g

Gopalkrishna Veni

Greg Gardner

Greg Harris

Gregory Sharp

Guido Gerig

Guillaume Pernelle

H

Hans J. Johnson

Hans Johnson

hans-johnson -at- uiowa.edu

http://www.psychiatry.uiowa.edu

i

Idk

Ipek Oguz

Ivan Kolesov

Jaime Garcia Guevara