Difference between revisions of "User:UpdateBot/Issue-2843-Consolidated-Extension-List/Nightly/ModuleExtensionListing"
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(This page has been updated using script slicer_wiki_extension_module_listing.py (rev eab5b90). For more details: * https://github.com/Slicer/slicer-wiki-scripts * http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Developers/Build_) |
(This page has been updated using script slicer_wiki_extension_module_listing.py (rev eab5b90). For more details: * https://github.com/Slicer/slicer-wiki-scripts * http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Developers/Build_) |
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*** [[#Modules_by_category_TestCases|Test Cases]] | *** [[#Modules_by_category_TestCases|Test Cases]] | ||
* [[#Modules_by_category_XNATSlicer|XNATSlicer]] | * [[#Modules_by_category_XNATSlicer|XNATSlicer]] | ||
| − | <span id=' | + | <span id='Modules_by_category_BRAINS'></span> |
== BRAINS == | == BRAINS == | ||
| − | <span id=' | + | <span id='Modules_by_category_LabelStatistics'></span> |
=== LabelStatistics === | === LabelStatistics === | ||
* BRAINSLabel Stats <small>(cli, built-in)</small> | * BRAINSLabel Stats <small>(cli, built-in)</small> | ||
| − | <span id=' | + | <span id='Modules_by_category_Cardiac_MRI_Toolkit'></span> |
== Cardiac MRI Toolkit == | == Cardiac MRI Toolkit == | ||
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Connected Threshold Filter] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Connected Threshold Filter] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
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* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration BRAINSFit] <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration BRAINSFit] <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit LASegmentation Graph Cuts] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit LASegmentation Graph Cuts] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| − | <span id=' | + | <span id='Modules_by_category_CMF_Registration'></span> |
== CMF Registration == | == CMF Registration == | ||
* [[Documentation/Nightly/Extensions/CMFreg|Apply Matrix]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small> | * [[Documentation/Nightly/Extensions/CMFreg|Apply Matrix]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small> | ||
| Line 101: | Line 101: | ||
* [[Documentation/Nightly/Modules/LabelAddition|Label Addition]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small> | * [[Documentation/Nightly/Modules/LabelAddition|Label Addition]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small> | ||
* [[Documentation/Nightly/Modules/Downsize|Downsize]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small> | * [[Documentation/Nightly/Modules/Downsize|Downsize]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small> | ||
| − | <span id=' | + | <span id='Modules_by_category_Voxelbase_Registration'></span> |
=== Voxelbase Registration === | === Voxelbase Registration === | ||
* [[Documentation/Nightly/Modules/MaskCreation|Mask Creation]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small> | * [[Documentation/Nightly/Modules/MaskCreation|Mask Creation]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small> | ||
* [[Documentation/Nightly/Modules/NonGrowing|Non Growing]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small> | * [[Documentation/Nightly/Modules/NonGrowing|Non Growing]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small> | ||
* [[Documentation/Nightly/Modules/Growing|Growing]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small> | * [[Documentation/Nightly/Modules/Growing|Growing]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small> | ||
| − | <span id=' | + | <span id='Modules_by_category_Converters'></span> |
== Converters == | == Converters == | ||
* [[Documentation/Nightly/Modules/VectorToScalarVolume|Vector To Scalar Volume]] <small>(scripted, built-in)</small> | * [[Documentation/Nightly/Modules/VectorToScalarVolume|Vector To Scalar Volume]] <small>(scripted, built-in)</small> | ||
| Line 113: | Line 113: | ||
* [[Documentation/Nightly/Modules/QuadEdgeSurfaceMesher|Quad Edge Surface Mesher]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerProstate|Slicer Prostate]] extension)</small> | * [[Documentation/Nightly/Modules/QuadEdgeSurfaceMesher|Quad Edge Surface Mesher]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerProstate|Slicer Prostate]] extension)</small> | ||
* [[Documentation/Nightly/Modules/CreateDICOMSeries|Create DICOMSeries]] <small>(cli, built-in)</small> | * [[Documentation/Nightly/Modules/CreateDICOMSeries|Create DICOMSeries]] <small>(cli, built-in)</small> | ||
| − | <span id=' | + | <span id='Modules_by_category_Developer_Tools'></span> |
== Developer Tools == | == Developer Tools == | ||
* [[Documentation/Nightly/Modules/EventBroker|Event Broker]] | * [[Documentation/Nightly/Modules/EventBroker|Event Broker]] | ||
| Line 123: | Line 123: | ||
* [[Documentation/Nightly/Modules/ExtensionWizard|Extension Wizard]] <small>(scripted, built-in)</small> | * [[Documentation/Nightly/Modules/ExtensionWizard|Extension Wizard]] <small>(scripted, built-in)</small> | ||
* [[Documentation/Nightly/Modules/ImageMaker|Image Maker]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/ImageMaker|Image Maker]] extension)</small> | * [[Documentation/Nightly/Modules/ImageMaker|Image Maker]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/ImageMaker|Image Maker]] extension)</small> | ||
| − | <span id=' | + | <span id='Modules_by_category_DICOM_Plugins'></span> |
=== DICOM Plugins === | === DICOM Plugins === | ||
* DICOMLongitudinal PETCTPlugin | * DICOMLongitudinal PETCTPlugin | ||
| Line 135: | Line 135: | ||
* DICOMScalar Volume Plugin | * DICOMScalar Volume Plugin | ||
* DICOMSlicer Data Bundle Plugin | * DICOMSlicer Data Bundle Plugin | ||
| − | <span id=' | + | <span id='Modules_by_category_Editor_Extensions'></span> |
=== Editor Extensions === | === Editor Extensions === | ||
* [[Documentation/Nightly/Extensions/IASEM|Binary Watershed Effect]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small> | * [[Documentation/Nightly/Extensions/IASEM|Binary Watershed Effect]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small> | ||
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* [[Documentation/Nightly/Extensions/IASEM|Double Threshold Effect]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small> | * [[Documentation/Nightly/Extensions/IASEM|Double Threshold Effect]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small> | ||
* [[Documentation/Nightly/Modules/PETTumorSegmentationEffect|PETTumor Segmentation Effect]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PETTumorSegmentation|PETTumor Segmentation]] extension)</small> | * [[Documentation/Nightly/Modules/PETTumorSegmentationEffect|PETTumor Segmentation Effect]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PETTumorSegmentation|PETTumor Segmentation]] extension)</small> | ||
| − | <span id=' | + | <span id='Modules_by_category_Matlab'></span> |
=== Matlab === | === Matlab === | ||
* [[Documentation/Nightly/Modules/MatlabCommander|Matlab Commander]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/MatlabBridge|Matlab Bridge]] extension)</small> | * [[Documentation/Nightly/Modules/MatlabCommander|Matlab Commander]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/MatlabBridge|Matlab Bridge]] extension)</small> | ||
* [[Documentation/Nightly/Modules/MatlabModuleGenerator|Matlab Module Generator]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/MatlabBridge|Matlab Bridge]] extension)</small> | * [[Documentation/Nightly/Modules/MatlabModuleGenerator|Matlab Module Generator]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/MatlabBridge|Matlab Bridge]] extension)</small> | ||
| − | <span id=' | + | <span id='Modules_by_category_Diffusion'></span> |
== Diffusion == | == Diffusion == | ||
* [[Documentation/Nightly/Modules/TractographyDisplay|Tractography Display]] <small>(loadable, built-in)</small> | * [[Documentation/Nightly/Modules/TractographyDisplay|Tractography Display]] <small>(loadable, built-in)</small> | ||
* DICOM2Full Brain Tractography <small>(scripted, built-in)</small> | * DICOM2Full Brain Tractography <small>(scripted, built-in)</small> | ||
| − | <span id=' | + | <span id='Modules_by_category_Diffusion_Data_Conversion'></span> |
=== Diffusion Data Conversion === | === Diffusion Data Conversion === | ||
* DWIConvert <small>(cli, built-in)</small> | * DWIConvert <small>(cli, built-in)</small> | ||
| − | <span id=' | + | <span id='Modules_by_category_Diffusion_Tensor_Images'></span> |
=== Diffusion Tensor Images === | === Diffusion Tensor Images === | ||
* [[Documentation/Nightly/Modules/ResampleDTIVolume|Resample DTIVolume]] <small>(cli, built-in)</small> | * [[Documentation/Nightly/Modules/ResampleDTIVolume|Resample DTIVolume]] <small>(cli, built-in)</small> | ||
| Line 159: | Line 159: | ||
* [[Documentation/Nightly/Modules/TractographyLabelMapSeeding|Tractography Label Map Seeding]] <small>(cli, built-in)</small> | * [[Documentation/Nightly/Modules/TractographyLabelMapSeeding|Tractography Label Map Seeding]] <small>(cli, built-in)</small> | ||
* Tractography Interactive Seeding <small>(loadable, built-in)</small> | * Tractography Interactive Seeding <small>(loadable, built-in)</small> | ||
| − | <span id=' | + | <span id='Modules_by_category_Diffusion_Weighted_Images'></span> |
=== Diffusion Weighted Images === | === Diffusion Weighted Images === | ||
* [[Documentation/Nightly/Modules/DWIRicianLMMSEFilter|DWIRician LMMSEFilter]] <small>(cli, built-in)</small> | * [[Documentation/Nightly/Modules/DWIRicianLMMSEFilter|DWIRician LMMSEFilter]] <small>(cli, built-in)</small> | ||
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* [[Documentation/Nightly/Modules/FinslerTractography|Finsler Tractography]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/FinslerTractography|Finsler Tractography]] extension)</small> | * [[Documentation/Nightly/Modules/FinslerTractography|Finsler Tractography]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/FinslerTractography|Finsler Tractography]] extension)</small> | ||
* [[Documentation/Nightly/Modules/DiffusionWeightedVolumeMasking|Diffusion Weighted Volume Masking]] <small>(cli, built-in)</small> | * [[Documentation/Nightly/Modules/DiffusionWeightedVolumeMasking|Diffusion Weighted Volume Masking]] <small>(cli, built-in)</small> | ||
| − | <span id=' | + | <span id='Modules_by_category_FiberAnalysis'></span> |
=== FiberAnalysis === | === FiberAnalysis === | ||
* [[Documentation/Nightly/Extensions/DTIAtlasFiberAnalyzer|Fiber Compare]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small> | * [[Documentation/Nightly/Extensions/DTIAtlasFiberAnalyzer|Fiber Compare]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small> | ||
| Line 174: | Line 174: | ||
* [[Documentation/Nightly/Extensions/DTIAtlasFiberAnalyzer|Merge Stat With Fiber]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small> | * [[Documentation/Nightly/Extensions/DTIAtlasFiberAnalyzer|Merge Stat With Fiber]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small> | ||
* [[Documentation/Nightly/Extensions/DTIAtlasFiberAnalyzer|dtitractstat]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small> | * [[Documentation/Nightly/Extensions/DTIAtlasFiberAnalyzer|dtitractstat]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small> | ||
| − | <span id=' | + | <span id='Modules_by_category_Tractography'></span> |
=== Tractography === | === Tractography === | ||
* [[Documentation/Nightly/Modules/FiberBundleToLabelMap|Fiber Bundle To Label Map]] <small>(scripted, built-in)</small> | * [[Documentation/Nightly/Modules/FiberBundleToLabelMap|Fiber Bundle To Label Map]] <small>(scripted, built-in)</small> | ||
* Fiber Tract Measurements <small>(cli, built-in)</small> | * Fiber Tract Measurements <small>(cli, built-in)</small> | ||
* Fiber Bundle Label Select <small>(cli, built-in)</small> | * Fiber Bundle Label Select <small>(cli, built-in)</small> | ||
| − | <span id=' | + | <span id='Modules_by_category_Editor_Effects'></span> |
== Editor Effects == | == Editor Effects == | ||
* [[Documentation/Nightly/Extensions/WindowLevelEffect|Window Level Effect]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/WindowLevelEffect|Window Level Effect]] extension)</small> | * [[Documentation/Nightly/Extensions/WindowLevelEffect|Window Level Effect]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/WindowLevelEffect|Window Level Effect]] extension)</small> | ||
| − | <span id=' | + | <span id='Modules_by_category_EditorEffect'></span> |
== EditorEffect == | == EditorEffect == | ||
* [[Documentation/Nightly/Extensions/PETTumorSegmentation|PETTumor Segmentation]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/PETTumorSegmentation|PETTumor Segmentation]] extension)</small> | * [[Documentation/Nightly/Extensions/PETTumorSegmentation|PETTumor Segmentation]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/PETTumorSegmentation|PETTumor Segmentation]] extension)</small> | ||
| − | <span id=' | + | <span id='Modules_by_category_Endoscopy'></span> |
== Endoscopy == | == Endoscopy == | ||
* [[Documentation/Nightly/Modules/Endoscopy|Endoscopy]] <small>(scripted, built-in)</small> | * [[Documentation/Nightly/Modules/Endoscopy|Endoscopy]] <small>(scripted, built-in)</small> | ||
| − | <span id=' | + | <span id='Modules_by_category_Examples'></span> |
== Examples == | == Examples == | ||
* [[Documentation/Nightly/Modules/FastGrowCut|Fast Grow Cut]] <small>(loadable, bundled in [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect] extension)</small> | * [[Documentation/Nightly/Modules/FastGrowCut|Fast Grow Cut]] <small>(loadable, bundled in [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect] extension)</small> | ||
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Fast Grow Cut Segmenter] <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small> | * [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Fast Grow Cut Segmenter] <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small> | ||
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small> | * [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small> | ||
| − | <span id=' | + | <span id='Modules_by_category_Exporter'></span> |
== Exporter == | == Exporter == | ||
* [[Documentation/Nightly/Modules/SlicerToKiwiExporter|Slicer To Kiwi Exporter]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerToKiwiExporter|Slicer To Kiwi Exporter]] extension)</small> | * [[Documentation/Nightly/Modules/SlicerToKiwiExporter|Slicer To Kiwi Exporter]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerToKiwiExporter|Slicer To Kiwi Exporter]] extension)</small> | ||
| − | <span id=' | + | <span id='Modules_by_category_Filtering'></span> |
== Filtering == | == Filtering == | ||
* [[Documentation/Nightly/Modules/ExtractSkeleton|Extract Skeleton]] <small>(cli, built-in)</small> | * [[Documentation/Nightly/Modules/ExtractSkeleton|Extract Skeleton]] <small>(cli, built-in)</small> | ||
| Line 207: | Line 207: | ||
* [[Documentation/Nightly/Modules/HistogramMatching|Histogram Matching]] <small>(cli, built-in)</small> | * [[Documentation/Nightly/Modules/HistogramMatching|Histogram Matching]] <small>(cli, built-in)</small> | ||
* [[Documentation/Nightly/Modules/CheckerBoardFilter|Checker Board Filter]] <small>(cli, built-in)</small> | * [[Documentation/Nightly/Modules/CheckerBoardFilter|Checker Board Filter]] <small>(cli, built-in)</small> | ||
| − | <span id=' | + | <span id='Modules_by_category_Arithmetic'></span> |
=== Arithmetic === | === Arithmetic === | ||
* [[Documentation/Nightly/Modules/MultiplyScalarVolumes|Multiply Scalar Volumes]] <small>(cli, built-in)</small> | * [[Documentation/Nightly/Modules/MultiplyScalarVolumes|Multiply Scalar Volumes]] <small>(cli, built-in)</small> | ||
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* [[Documentation/Nightly/Modules/SubtractScalarVolumes|Subtract Scalar Volumes]] <small>(cli, built-in)</small> | * [[Documentation/Nightly/Modules/SubtractScalarVolumes|Subtract Scalar Volumes]] <small>(cli, built-in)</small> | ||
* [[Documentation/Nightly/Modules/MaskScalarVolume|Mask Scalar Volume]] <small>(cli, built-in)</small> | * [[Documentation/Nightly/Modules/MaskScalarVolume|Mask Scalar Volume]] <small>(cli, built-in)</small> | ||
| − | <span id=' | + | <span id='Modules_by_category_Denoising'></span> |
=== Denoising === | === Denoising === | ||
* [[Documentation/Nightly/Modules/GradientAnisotropicDiffusion|Gradient Anisotropic Diffusion]] <small>(cli, built-in)</small> | * [[Documentation/Nightly/Modules/GradientAnisotropicDiffusion|Gradient Anisotropic Diffusion]] <small>(cli, built-in)</small> | ||
| Line 220: | Line 220: | ||
* [[Documentation/Nightly/Modules/GaussianBlurImageFilter|Gaussian Blur Image Filter]] <small>(cli, built-in)</small> | * [[Documentation/Nightly/Modules/GaussianBlurImageFilter|Gaussian Blur Image Filter]] <small>(cli, built-in)</small> | ||
* [[Documentation/Nightly/Modules/CurvatureAnisotropicDiffusion|Curvature Anisotropic Diffusion]] <small>(cli, built-in)</small> | * [[Documentation/Nightly/Modules/CurvatureAnisotropicDiffusion|Curvature Anisotropic Diffusion]] <small>(cli, built-in)</small> | ||
| − | <span id=' | + | <span id='Modules_by_category_Morphology'></span> |
=== Morphology === | === Morphology === | ||
* [[Documentation/Nightly/Modules/GrayscaleFillHoleImageFilter|Grayscale Fill Hole Image Filter]] <small>(cli, built-in)</small> | * [[Documentation/Nightly/Modules/GrayscaleFillHoleImageFilter|Grayscale Fill Hole Image Filter]] <small>(cli, built-in)</small> | ||
* [[Documentation/Nightly/Modules/GrayscaleGrindPeakImageFilter|Grayscale Grind Peak Image Filter]] <small>(cli, built-in)</small> | * [[Documentation/Nightly/Modules/GrayscaleGrindPeakImageFilter|Grayscale Grind Peak Image Filter]] <small>(cli, built-in)</small> | ||
| − | <span id=' | + | <span id='Modules_by_category_IGT'></span> |
== IGT == | == IGT == | ||
* [[Documentation/Nightly/Extensions/LightWeightRobotIGT|Light Weight Robot IGT]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/LightWeightRobotIGT|Light Weight Robot IGT]] extension)</small> | * [[Documentation/Nightly/Extensions/LightWeightRobotIGT|Light Weight Robot IGT]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/LightWeightRobotIGT|Light Weight Robot IGT]] extension)</small> | ||
| Line 248: | Line 248: | ||
* [[Documentation/Nightly/Extensions/SlicerIGT|Pivot Calibration]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small> | * [[Documentation/Nightly/Extensions/SlicerIGT|Pivot Calibration]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small> | ||
* [[Documentation/Nightly/Modules/CornerAnnotation|Corner Annotation]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/CornerAnnotation|Corner Annotation]] extension)</small> | * [[Documentation/Nightly/Modules/CornerAnnotation|Corner Annotation]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/CornerAnnotation|Corner Annotation]] extension)</small> | ||
| − | <span id=' | + | <span id='Modules_by_category_Informatics'></span> |
== Informatics == | == Informatics == | ||
* [[Documentation/Nightly/Modules/Annotations|Annotations]] <small>(loadable, built-in)</small> | * [[Documentation/Nightly/Modules/Annotations|Annotations]] <small>(loadable, built-in)</small> | ||
| Line 260: | Line 260: | ||
* [[Documentation/Nightly/Modules/SubjectHierarchy|Subject Hierarchy]] <small>(loadable, built-in)</small> | * [[Documentation/Nightly/Modules/SubjectHierarchy|Subject Hierarchy]] <small>(loadable, built-in)</small> | ||
* [[Documentation/Nightly/Extensions/TCIABrowser|TCIABrowser]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/TCIABrowser|TCIABrowser]] extension)</small> | * [[Documentation/Nightly/Extensions/TCIABrowser|TCIABrowser]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/TCIABrowser|TCIABrowser]] extension)</small> | ||
| − | <span id=' | + | <span id='Modules_by_category_Legacy'></span> |
== Legacy == | == Legacy == | ||
| − | <span id=' | + | <span id='Modules_by_category_Converters'></span> |
=== Converters === | === Converters === | ||
* [[Documentation/Nightly/Modules/BSplineToDeformationField|BSpline To Deformation Field]] <small>(cli, built-in)</small> | * [[Documentation/Nightly/Modules/BSplineToDeformationField|BSpline To Deformation Field]] <small>(cli, built-in)</small> | ||
| − | <span id=' | + | <span id='Modules_by_category_Diffusion'></span> |
=== Diffusion === | === Diffusion === | ||
| − | <span id=' | + | <span id='Modules_by_category_Denoising'></span> |
==== Denoising ==== | ==== Denoising ==== | ||
* [[Documentation/Nightly/Modules/DWIUnbiasedNonLocalMeansFilter|DWIUnbiased Non Local Means Filter]] <small>(cli, built-in)</small> | * [[Documentation/Nightly/Modules/DWIUnbiasedNonLocalMeansFilter|DWIUnbiased Non Local Means Filter]] <small>(cli, built-in)</small> | ||
| − | <span id=' | + | <span id='Modules_by_category_Diffusion_Data_Conversion'></span> |
==== Diffusion Data Conversion ==== | ==== Diffusion Data Conversion ==== | ||
* DTIimport <small>(cli, built-in)</small> | * DTIimport <small>(cli, built-in)</small> | ||
* DTIexport <small>(cli, built-in)</small> | * DTIexport <small>(cli, built-in)</small> | ||
| − | <span id=' | + | <span id='Modules_by_category_Filtering'></span> |
=== Filtering === | === Filtering === | ||
* [[Documentation/Nightly/Modules/OtsuThresholdImageFilter|Otsu Threshold Image Filter]] <small>(cli, built-in)</small> | * [[Documentation/Nightly/Modules/OtsuThresholdImageFilter|Otsu Threshold Image Filter]] <small>(cli, built-in)</small> | ||
* [[Documentation/Nightly/Modules/ResampleScalarVolume|Resample Scalar Volume]] <small>(cli, built-in)</small> | * [[Documentation/Nightly/Modules/ResampleScalarVolume|Resample Scalar Volume]] <small>(cli, built-in)</small> | ||
| − | <span id=' | + | <span id='Modules_by_category_Registration'></span> |
=== Registration === | === Registration === | ||
* Test Grid Transform Registration <small>(cli, built-in)</small> | * Test Grid Transform Registration <small>(cli, built-in)</small> | ||
* [[Documentation/Nightly/Modules/ExpertAutomatedRegistration|Expert Automated Registration]] <small>(cli, built-in)</small> | * [[Documentation/Nightly/Modules/ExpertAutomatedRegistration|Expert Automated Registration]] <small>(cli, built-in)</small> | ||
| − | <span id=' | + | <span id='Modules_by_category_Work_in_Progress'></span> |
=== Work in Progress === | === Work in Progress === | ||
| − | <span id=' | + | <span id='Modules_by_category_Diffusion_Tensor'></span> |
==== Diffusion Tensor ==== | ==== Diffusion Tensor ==== | ||
| − | <span id=' | + | <span id='Modules_by_category_Test'></span> |
===== Test ===== | ===== Test ===== | ||
* Diffusion Tensor Test <small>(cli, built-in)</small> | * Diffusion Tensor Test <small>(cli, built-in)</small> | ||
| − | <span id=' | + | <span id='Modules_by_category_Mesh_Generation'></span> |
== Mesh Generation == | == Mesh Generation == | ||
* [[Documentation/Nightly/Extensions/CleaverExtension|Cleaver CLI]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/CleaverExtension|Cleaver Extension]] extension)</small> | * [[Documentation/Nightly/Extensions/CleaverExtension|Cleaver CLI]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/CleaverExtension|Cleaver Extension]] extension)</small> | ||
| − | <span id=' | + | <span id='Modules_by_category_MeshGeneration'></span> |
== MeshGeneration == | == MeshGeneration == | ||
* [[Documentation/Nightly/Modules/BodyCentricCubicMesh|Body Centric Cubic Mesh]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]] extension)</small> | * [[Documentation/Nightly/Modules/BodyCentricCubicMesh|Body Centric Cubic Mesh]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]] extension)</small> | ||
* [[Documentation/Nightly/Modules/MeshCompression|Mesh Compression]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]] extension)</small> | * [[Documentation/Nightly/Modules/MeshCompression|Mesh Compression]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]] extension)</small> | ||
| − | <span id=' | + | <span id='Modules_by_category_Microscopy'></span> |
== Microscopy == | == Microscopy == | ||
* [[Documentation/Nightly/Extensions/IASEM|Bin Shrink]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small> | * [[Documentation/Nightly/Extensions/IASEM|Bin Shrink]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small> | ||
| Line 303: | Line 303: | ||
* [[Documentation/Nightly/Extensions/IASEM|IASEMImport]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small> | * [[Documentation/Nightly/Extensions/IASEM|IASEMImport]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small> | ||
* [[Documentation/Nightly/Extensions/IASEM|IASEMImport Series]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small> | * [[Documentation/Nightly/Extensions/IASEM|IASEMImport Series]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small> | ||
| − | <span id=' | + | <span id='Modules_by_category_MultiVolume_Support'></span> |
== MultiVolume Support == | == MultiVolume Support == | ||
* [[Documentation/Nightly/Modules/MultiVolumeExplorer|Multi Volume Explorer]] <small>(loadable, built-in)</small> | * [[Documentation/Nightly/Modules/MultiVolumeExplorer|Multi Volume Explorer]] <small>(loadable, built-in)</small> | ||
* [[Documentation/Nightly/Modules/MultiVolumeImporter|Multi Volume Importer]] <small>(scripted, built-in)</small> | * [[Documentation/Nightly/Modules/MultiVolumeImporter|Multi Volume Importer]] <small>(scripted, built-in)</small> | ||
| − | <span id=' | + | <span id='Modules_by_category_Perk_Tutor'></span> |
== Perk Tutor == | == Perk Tutor == | ||
* [[Documentation/Nightly/Extensions/PerkTutor|Python Metrics Calculator]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PerkTutor|Perk Tutor]] extension)</small> | * [[Documentation/Nightly/Extensions/PerkTutor|Python Metrics Calculator]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PerkTutor|Perk Tutor]] extension)</small> | ||
| Line 313: | Line 313: | ||
* [[Documentation/Nightly/Modules/TransformRecorder|Transform Recorder]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/PerkTutor|Perk Tutor]] extension)</small> | * [[Documentation/Nightly/Modules/TransformRecorder|Transform Recorder]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/PerkTutor|Perk Tutor]] extension)</small> | ||
* [[Documentation/Nightly/Modules/PerkEvaluator|Perk Evaluator]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/PerkTutor|Perk Tutor]] extension)</small> | * [[Documentation/Nightly/Modules/PerkEvaluator|Perk Evaluator]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/PerkTutor|Perk Tutor]] extension)</small> | ||
| − | <span id=' | + | <span id='Modules_by_category_Plastimatch'></span> |
== Plastimatch == | == Plastimatch == | ||
* [[Documentation/Nightly/Modules/DicomSroExport|Dicom Sro Export]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small> | * [[Documentation/Nightly/Modules/DicomSroExport|Dicom Sro Export]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small> | ||
* [[Documentation/Nightly/Extensions/SlicerRT|Plm Register]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small> | * [[Documentation/Nightly/Extensions/SlicerRT|Plm Register]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small> | ||
| − | <span id=' | + | <span id='Modules_by_category_Registration'></span> |
=== Registration === | === Registration === | ||
* [[Documentation/Nightly/Extensions/SlicerRT|plastimatch slicer bspline]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small> | * [[Documentation/Nightly/Extensions/SlicerRT|plastimatch slicer bspline]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small> | ||
* [[Documentation/Nightly/Extensions/SlicerRT|plastimatch slicer landwarp]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small> | * [[Documentation/Nightly/Extensions/SlicerRT|plastimatch slicer landwarp]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small> | ||
| − | <span id=' | + | <span id='Modules_by_category_Utilities'></span> |
=== Utilities === | === Utilities === | ||
* [[Documentation/Nightly/Extensions/SlicerRT|Plastimatch Py]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small> | * [[Documentation/Nightly/Extensions/SlicerRT|Plastimatch Py]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small> | ||
| − | <span id=' | + | <span id='Modules_by_category_Quantification'></span> |
== Quantification == | == Quantification == | ||
* [[Documentation/Nightly/Modules/QuantitativeIndicesCLI|Quantitative Indices CLI]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/PET-IndiC|PET-Indi C]] extension)</small> | * [[Documentation/Nightly/Modules/QuantitativeIndicesCLI|Quantitative Indices CLI]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/PET-IndiC|PET-Indi C]] extension)</small> | ||
| Line 340: | Line 340: | ||
* [[Documentation/Nightly/Modules/DataProbe|Data Probe]] <small>(scripted, built-in)</small> | * [[Documentation/Nightly/Modules/DataProbe|Data Probe]] <small>(scripted, built-in)</small> | ||
* [[Documentation/Nightly/Modules/QuantitativeIndicesTool|Quantitative Indices Tool]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PET-IndiC|PET-Indi C]] extension)</small> | * [[Documentation/Nightly/Modules/QuantitativeIndicesTool|Quantitative Indices Tool]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PET-IndiC|PET-Indi C]] extension)</small> | ||
| − | <span id=' | + | <span id='Modules_by_category_ChangeQuantification'></span> |
=== ChangeQuantification === | === ChangeQuantification === | ||
* [[Documentation/Nightly/Modules/IntensityDifferenceMetric|Intensity Difference Metric]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/ChangeTracker|Change Tracker]] extension)</small> | * [[Documentation/Nightly/Modules/IntensityDifferenceMetric|Intensity Difference Metric]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/ChangeTracker|Change Tracker]] extension)</small> | ||
| − | <span id=' | + | <span id='Modules_by_category_Radiotherapy'></span> |
== Radiotherapy == | == Radiotherapy == | ||
* [[Documentation/Nightly/Extensions/SlicerRT|Beams]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small> | * [[Documentation/Nightly/Extensions/SlicerRT|Beams]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small> | ||
| Line 351: | Line 351: | ||
* [[Documentation/Nightly/Modules/DicomSroImport|Dicom Sro Import]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small> | * [[Documentation/Nightly/Modules/DicomSroImport|Dicom Sro Import]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small> | ||
* [[Documentation/Nightly/Extensions/SlicerRT|Planar Image]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small> | * [[Documentation/Nightly/Extensions/SlicerRT|Planar Image]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small> | ||
| − | <span id=' | + | <span id='Modules_by_category_Registration'></span> |
== Registration == | == Registration == | ||
* [[Documentation/Nightly/Modules/BRAINSResample|BRAINSResample]] <small>(cli, built-in)</small> | * [[Documentation/Nightly/Modules/BRAINSResample|BRAINSResample]] <small>(cli, built-in)</small> | ||
| Line 359: | Line 359: | ||
* [[Documentation/Nightly/Modules/BRAINSFit|BRAINSFit]] <small>(cli, built-in)</small> | * [[Documentation/Nightly/Modules/BRAINSFit|BRAINSFit]] <small>(cli, built-in)</small> | ||
* [[Documentation/Nightly/Extensions/PBNRR|PBNRR]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/PBNRR|PBNRR]] extension)</small> | * [[Documentation/Nightly/Extensions/PBNRR|PBNRR]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/PBNRR|PBNRR]] extension)</small> | ||
| − | <span id=' | + | <span id='Modules_by_category_Label_Registration'></span> |
=== Label Registration === | === Label Registration === | ||
* [[Documentation/Nightly/Modules/DistanceMapBasedRegistration|Distance Map Based Registration]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerProstate|Slicer Prostate]] extension)</small> | * [[Documentation/Nightly/Modules/DistanceMapBasedRegistration|Distance Map Based Registration]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerProstate|Slicer Prostate]] extension)</small> | ||
| − | <span id=' | + | <span id='Modules_by_category_Specialized'></span> |
=== Specialized === | === Specialized === | ||
* [[Documentation/Nightly/Modules/ACPCTransform|ACPCTransform]] <small>(cli, built-in)</small> | * [[Documentation/Nightly/Modules/ACPCTransform|ACPCTransform]] <small>(cli, built-in)</small> | ||
| Line 369: | Line 369: | ||
* [[Documentation/Nightly/Modules/BRAINSDemonWarp|BRAINSDemon Warp]] <small>(cli, built-in)</small> | * [[Documentation/Nightly/Modules/BRAINSDemonWarp|BRAINSDemon Warp]] <small>(cli, built-in)</small> | ||
* [[Documentation/Nightly/Modules/Reformat|Reformat]] <small>(loadable, built-in)</small> | * [[Documentation/Nightly/Modules/Reformat|Reformat]] <small>(loadable, built-in)</small> | ||
| − | <span id=' | + | <span id='Modules_by_category_Segmentation'></span> |
== Segmentation == | == Segmentation == | ||
* [[Documentation/Nightly/Modules/AirwaySegmentation|Airway Segmentation]] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation] extension)</small> | * [[Documentation/Nightly/Modules/AirwaySegmentation|Airway Segmentation]] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation] extension)</small> | ||
| Line 385: | Line 385: | ||
* [[Documentation/Nightly/Modules/SwissSkullStripper|Swiss Skull Stripper]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/SwissSkullStripper|Swiss Skull Stripper]] extension)</small> | * [[Documentation/Nightly/Modules/SwissSkullStripper|Swiss Skull Stripper]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/SwissSkullStripper|Swiss Skull Stripper]] extension)</small> | ||
* [[Documentation/Nightly/Extensions/IntensitySegmenter|Intensity Segmenter]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/IntensitySegmenter|Intensity Segmenter]] extension)</small> | * [[Documentation/Nightly/Extensions/IntensitySegmenter|Intensity Segmenter]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/IntensitySegmenter|Intensity Segmenter]] extension)</small> | ||
| − | <span id=' | + | <span id='Modules_by_category_Specialized'></span> |
=== Specialized === | === Specialized === | ||
* EMSegment Command Line <small>(cli, built-in)</small> | * EMSegment Command Line <small>(cli, built-in)</small> | ||
* [[Documentation/Nightly/Modules/RobustStatisticsSegmenter|Robust Statistics Segmenter]] <small>(cli, built-in)</small> | * [[Documentation/Nightly/Modules/RobustStatisticsSegmenter|Robust Statistics Segmenter]] <small>(cli, built-in)</small> | ||
* BRAINSROIAuto <small>(cli, built-in)</small> | * BRAINSROIAuto <small>(cli, built-in)</small> | ||
| − | <span id=' | + | <span id='Modules_by_category_Sequences'></span> |
== Sequences == | == Sequences == | ||
* [[Documentation/Nightly/Extensions/Sequences|Metafile Importer]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/Sequences|Sequences]] extension)</small> | * [[Documentation/Nightly/Extensions/Sequences|Metafile Importer]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/Sequences|Sequences]] extension)</small> | ||
* [[Documentation/Nightly/Extensions/Sequences|Sequence Browser]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/Sequences|Sequences]] extension)</small> | * [[Documentation/Nightly/Extensions/Sequences|Sequence Browser]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/Sequences|Sequences]] extension)</small> | ||
* [[Documentation/Nightly/Extensions/Sequences|Sequences]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/Sequences|Sequences]] extension)</small> | * [[Documentation/Nightly/Extensions/Sequences|Sequences]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/Sequences|Sequences]] extension)</small> | ||
| − | <span id=' | + | <span id='Modules_by_category_Shape_Analysis'></span> |
== Shape Analysis == | == Shape Analysis == | ||
* [[Documentation/Nightly/Extensions/MeshToLabelMap|Mesh To Label Map]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/MeshToLabelMap|Mesh To Label Map]] extension)</small> | * [[Documentation/Nightly/Extensions/MeshToLabelMap|Mesh To Label Map]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/MeshToLabelMap|Mesh To Label Map]] extension)</small> | ||
| − | <span id=' | + | <span id='Modules_by_category_Slicelets'></span> |
== Slicelets == | == Slicelets == | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis Algo] <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis Algo] <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small> | ||
| − | <span id=' | + | <span id='Modules_by_category_Surface_Models'></span> |
== Surface Models == | == Surface Models == | ||
* [[Documentation/Nightly/Modules/ModelToLabelMap|Model To Label Map]] <small>(cli, built-in)</small> | * [[Documentation/Nightly/Modules/ModelToLabelMap|Model To Label Map]] <small>(cli, built-in)</small> | ||
| Line 410: | Line 410: | ||
* [[Documentation/Nightly/Modules/LabelMapSmoothing|Label Map Smoothing]] <small>(cli, built-in)</small> | * [[Documentation/Nightly/Modules/LabelMapSmoothing|Label Map Smoothing]] <small>(cli, built-in)</small> | ||
* [[Documentation/Nightly/Modules/ModelMaker|Model Maker]] <small>(cli, built-in)</small> | * [[Documentation/Nightly/Modules/ModelMaker|Model Maker]] <small>(cli, built-in)</small> | ||
| − | <span id=' | + | <span id='Modules_by_category_Testing'></span> |
== Testing == | == Testing == | ||
* Slicer MRBTest | * Slicer MRBTest | ||
| Line 419: | Line 419: | ||
* [[Documentation/Nightly/Extensions/Scoliosis|Scoliosis Monitoring]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/Scoliosis|Scoliosis]] extension)</small> | * [[Documentation/Nightly/Extensions/Scoliosis|Scoliosis Monitoring]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/Scoliosis|Scoliosis]] extension)</small> | ||
* Performance Tests | * Performance Tests | ||
| − | <span id=' | + | <span id='Modules_by_category_IGT_Tests'></span> |
=== IGT Tests === | === IGT Tests === | ||
* Watchdog Self Test | * Watchdog Self Test | ||
* Breach Warning Self Test | * Breach Warning Self Test | ||
| − | <span id=' | + | <span id='Modules_by_category_TestCases'></span> |
=== TestCases === | === TestCases === | ||
* Slice Link Logic <small>(scripted, built-in)</small> | * Slice Link Logic <small>(scripted, built-in)</small> | ||
| Line 452: | Line 452: | ||
* Crop Volume Self Test | * Crop Volume Self Test | ||
* label Toggle Bug2049 | * label Toggle Bug2049 | ||
| − | <span id=' | + | <span id='Modules_by_category_Unspecified'></span> |
== Unspecified == | == Unspecified == | ||
* BRAINSDWICleanup <small>(cli, built-in)</small> | * BRAINSDWICleanup <small>(cli, built-in)</small> | ||
| − | <span id=' | + | <span id='Modules_by_category_Utilities'></span> |
== Utilities == | == Utilities == | ||
* [[Documentation/Nightly/Modules/ThingiverseBrowser|Thingiverse Browser]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/ThingiverseBrowser|Thingiverse Browser]] extension)</small> | * [[Documentation/Nightly/Modules/ThingiverseBrowser|Thingiverse Browser]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/ThingiverseBrowser|Thingiverse Browser]] extension)</small> | ||
| Line 461: | Line 461: | ||
* EMSegment Transform To New Format <small>(cli, built-in)</small> | * EMSegment Transform To New Format <small>(cli, built-in)</small> | ||
* [[Documentation/Nightly/Modules/DataStore|Data Store]] <small>(loadable, built-in)</small> | * [[Documentation/Nightly/Modules/DataStore|Data Store]] <small>(loadable, built-in)</small> | ||
| − | <span id=' | + | <span id='Modules_by_category_BRAINS'></span> |
=== BRAINS === | === BRAINS === | ||
* BRAINSTransform Convert <small>(cli, built-in)</small> | * BRAINSTransform Convert <small>(cli, built-in)</small> | ||
| − | <span id=' | + | <span id='Modules_by_category_Vascular_Modeling_Toolkit'></span> |
== Vascular Modeling Toolkit == | == Vascular Modeling Toolkit == | ||
* [http://slicer.vmtk.org/ Vesselness Filtering] <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small> | * [http://slicer.vmtk.org/ Vesselness Filtering] <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small> | ||
* [http://slicer.vmtk.org/ Centerline Computation] <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small> | * [http://slicer.vmtk.org/ Centerline Computation] <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small> | ||
* [http://slicer.vmtk.org/ Level Set Segmentation] <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small> | * [http://slicer.vmtk.org/ Level Set Segmentation] <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small> | ||
| − | <span id=' | + | <span id='Modules_by_category_Wizards'></span> |
== Wizards == | == Wizards == | ||
* [[Documentation/Nightly/Modules/CompareVolumes|Compare Volumes]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small> | * [[Documentation/Nightly/Modules/CompareVolumes|Compare Volumes]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small> | ||
* [[Documentation/Nightly/Modules/ChangeTracker|Change Tracker]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/ChangeTracker|Change Tracker]] extension)</small> | * [[Documentation/Nightly/Modules/ChangeTracker|Change Tracker]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/ChangeTracker|Change Tracker]] extension)</small> | ||
| − | <span id=' | + | <span id='Modules_by_category_Work_in_Progress'></span> |
== Work in Progress == | == Work in Progress == | ||
* [[Documentation/Nightly/Extensions/LongitudinalPETCT|Longitudinal PETCT]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/LongitudinalPETCT|Longitudinal PETCT]] extension)</small> | * [[Documentation/Nightly/Extensions/LongitudinalPETCT|Longitudinal PETCT]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/LongitudinalPETCT|Longitudinal PETCT]] extension)</small> | ||
| − | <span id=' | + | <span id='Modules_by_category_Converters'></span> |
=== Converters === | === Converters === | ||
* [[Documentation/Nightly/Extensions/Reporting|Label To DICOMSEGConverter]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/Reporting|Reporting]] extension)</small> | * [[Documentation/Nightly/Extensions/Reporting|Label To DICOMSEGConverter]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/Reporting|Reporting]] extension)</small> | ||
| − | <span id=' | + | <span id='Modules_by_category_Informatics'></span> |
=== Informatics === | === Informatics === | ||
* [[Documentation/Nightly/Extensions/Reporting|Reporting]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/Reporting|Reporting]] extension)</small> | * [[Documentation/Nightly/Extensions/Reporting|Reporting]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/Reporting|Reporting]] extension)</small> | ||
| − | <span id=' | + | <span id='Modules_by_category_TestCases'></span> |
==== TestCases ==== | ==== TestCases ==== | ||
* Reporting Self Test | * Reporting Self Test | ||
* Label To DICOMSEGConverter Self Test | * Label To DICOMSEGConverter Self Test | ||
| − | <span id=' | + | <span id='Modules_by_category_XNATSlicer'></span> |
== XNATSlicer == | == XNATSlicer == | ||
* [[Documentation/Nightly/Extensions/XNATSlicer|Xnat Slicer]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/XNATSlicer|XNATSlicer]] extension)</small> | * [[Documentation/Nightly/Extensions/XNATSlicer|Xnat Slicer]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/XNATSlicer|XNATSlicer]] extension)</small> | ||
| Line 516: | Line 516: | ||
* [[#Extensions_by_category_Vascular_Modeling_Toolkit|Vascular Modeling Toolkit]] | * [[#Extensions_by_category_Vascular_Modeling_Toolkit|Vascular Modeling Toolkit]] | ||
* [[#Extensions_by_category_Wizards|Wizards]] | * [[#Extensions_by_category_Wizards|Wizards]] | ||
| − | <span id=' | + | <span id='Extensions_by_category_Cardiac'></span> |
== Cardiac == | == Cardiac == | ||
* [http://brainsia.github.io/CardiacAgatstonMeasures/ Cardiac Agaston Measures] | * [http://brainsia.github.io/CardiacAgatstonMeasures/ Cardiac Agaston Measures] | ||
| − | <span id=' | + | <span id='Extensions_by_category_Cardiac_MRI_toolkit'></span> |
== Cardiac MRI toolkit == | == Cardiac MRI toolkit == | ||
* [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] | * [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] | ||
| − | <span id=' | + | <span id='Extensions_by_category_Converters'></span> |
== Converters == | == Converters == | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] | ||
| − | <span id=' | + | <span id='Extensions_by_category_Developer_Tools'></span> |
== Developer Tools == | == Developer Tools == | ||
* [[Documentation/Nightly/Extensions/ImageMaker|Image Maker]] | * [[Documentation/Nightly/Extensions/ImageMaker|Image Maker]] | ||
| Line 531: | Line 531: | ||
* [[Documentation/Nightly/Extensions/PyDevRemoteDebug|Py Dev Remote Debug]] | * [[Documentation/Nightly/Extensions/PyDevRemoteDebug|Py Dev Remote Debug]] | ||
* [[Documentation/Nightly/Extensions/MatlabBridge|Matlab Bridge]] | * [[Documentation/Nightly/Extensions/MatlabBridge|Matlab Bridge]] | ||
| − | <span id=' | + | <span id='Extensions_by_category_Diffusion'></span> |
== Diffusion == | == Diffusion == | ||
* [[Documentation/Nightly/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] | * [[Documentation/Nightly/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] | ||
| − | <span id=' | + | <span id='Extensions_by_category_Editor_Effects'></span> |
== Editor Effects == | == Editor Effects == | ||
* [[Documentation/Nightly/Extensions/WindowLevelEffect|Window Level Effect]] | * [[Documentation/Nightly/Extensions/WindowLevelEffect|Window Level Effect]] | ||
| − | <span id=' | + | <span id='Extensions_by_category_Exporter'></span> |
== Exporter == | == Exporter == | ||
* [[Documentation/Nightly/Extensions/SlicerToKiwiExporter|Slicer To Kiwi Exporter]] | * [[Documentation/Nightly/Extensions/SlicerToKiwiExporter|Slicer To Kiwi Exporter]] | ||
| − | <span id=' | + | <span id='Extensions_by_category_IGT'></span> |
== IGT == | == IGT == | ||
* [[Documentation/Nightly/Extensions/LightWeightRobotIGT|Light Weight Robot IGT]] | * [[Documentation/Nightly/Extensions/LightWeightRobotIGT|Light Weight Robot IGT]] | ||
| Line 552: | Line 552: | ||
* [[Documentation/Nightly/Extensions/iGyne|i Gyne]] | * [[Documentation/Nightly/Extensions/iGyne|i Gyne]] | ||
* [[Documentation/Nightly/Extensions/ResectionPlanner|Resection Planner]] | * [[Documentation/Nightly/Extensions/ResectionPlanner|Resection Planner]] | ||
| − | <span id=' | + | <span id='Extensions_by_category_Informatics'></span> |
== Informatics == | == Informatics == | ||
* [[Documentation/Nightly/Extensions/Reporting|Reporting]] | * [[Documentation/Nightly/Extensions/Reporting|Reporting]] | ||
| Line 559: | Line 559: | ||
* [[Documentation/Nightly/Extensions/SlicerProstate|Slicer Prostate]] | * [[Documentation/Nightly/Extensions/SlicerProstate|Slicer Prostate]] | ||
* [[Documentation/Nightly/Extensions/TCIABrowser|TCIABrowser]] | * [[Documentation/Nightly/Extensions/TCIABrowser|TCIABrowser]] | ||
| − | <span id=' | + | <span id='Extensions_by_category_Mesh_Generation'></span> |
== Mesh Generation == | == Mesh Generation == | ||
* [[Documentation/Nightly/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]] | * [[Documentation/Nightly/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]] | ||
* [[Documentation/Nightly/Extensions/CleaverExtension|Cleaver Extension]] | * [[Documentation/Nightly/Extensions/CleaverExtension|Cleaver Extension]] | ||
| − | <span id=' | + | <span id='Extensions_by_category_Microscopy'></span> |
== Microscopy == | == Microscopy == | ||
* [[Documentation/Nightly/Extensions/IASEM|IASEM]] | * [[Documentation/Nightly/Extensions/IASEM|IASEM]] | ||
| − | <span id=' | + | <span id='Extensions_by_category_Nuclear_Medicine'></span> |
== Nuclear Medicine == | == Nuclear Medicine == | ||
* [http://gti-fing.github.io/SlicerPetSpectAnalysis Pet Spect Analysis] | * [http://gti-fing.github.io/SlicerPetSpectAnalysis Pet Spect Analysis] | ||
| − | <span id=' | + | <span id='Extensions_by_category_Quantification'></span> |
== Quantification == | == Quantification == | ||
* [[Documentation/Nightly/Extensions/PkModeling|Pk Modeling]] | * [[Documentation/Nightly/Extensions/PkModeling|Pk Modeling]] | ||
| Line 575: | Line 575: | ||
* [[Documentation/Nightly/Extensions/DiceComputation|Dice Computation]] | * [[Documentation/Nightly/Extensions/DiceComputation|Dice Computation]] | ||
* [[Documentation/Nightly/Extensions/PET-IndiC|PET-Indi C]] | * [[Documentation/Nightly/Extensions/PET-IndiC|PET-Indi C]] | ||
| − | <span id=' | + | <span id='Extensions_by_category_Radiotherapy'></span> |
== Radiotherapy == | == Radiotherapy == | ||
* [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] | * [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] | ||
| − | <span id=' | + | <span id='Extensions_by_category_Registration'></span> |
== Registration == | == Registration == | ||
* [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] | * [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] | ||
* [[Documentation/Nightly/Extensions/PBNRR|PBNRR]] | * [[Documentation/Nightly/Extensions/PBNRR|PBNRR]] | ||
| − | <span id=' | + | <span id='Extensions_by_category_Remote'></span> |
== Remote == | == Remote == | ||
* [[Documentation/Nightly/Extensions/XNATSlicer|XNATSlicer]] | * [[Documentation/Nightly/Extensions/XNATSlicer|XNATSlicer]] | ||
| − | <span id=' | + | <span id='Extensions_by_category_Scoliosis'></span> |
== Scoliosis == | == Scoliosis == | ||
* [[Documentation/Nightly/Extensions/Scoliosis|Scoliosis]] | * [[Documentation/Nightly/Extensions/Scoliosis|Scoliosis]] | ||
| − | <span id=' | + | <span id='Extensions_by_category_Segmentation'></span> |
== Segmentation == | == Segmentation == | ||
* [[Documentation/Nightly/Extensions/OpenCAD|Open CAD]] | * [[Documentation/Nightly/Extensions/OpenCAD|Open CAD]] | ||
| Line 603: | Line 603: | ||
* [[Documentation/Nightly/Extensions/IntensitySegmenter|Intensity Segmenter]] | * [[Documentation/Nightly/Extensions/IntensitySegmenter|Intensity Segmenter]] | ||
* [[Documentation/Nightly/Extensions/VolumeClip|Volume Clip]] | * [[Documentation/Nightly/Extensions/VolumeClip|Volume Clip]] | ||
| − | <span id=' | + | <span id='Extensions_by_category_Sequences'></span> |
== Sequences == | == Sequences == | ||
* [[Documentation/Nightly/Extensions/Sequences|Sequences]] | * [[Documentation/Nightly/Extensions/Sequences|Sequences]] | ||
| − | <span id=' | + | <span id='Extensions_by_category_Shape_Analysis'></span> |
== Shape Analysis == | == Shape Analysis == | ||
* [[Documentation/Nightly/Extensions/MeshToLabelMap|Mesh To Label Map]] | * [[Documentation/Nightly/Extensions/MeshToLabelMap|Mesh To Label Map]] | ||
| − | <span id=' | + | <span id='Extensions_by_category_Tractography'></span> |
== Tractography == | == Tractography == | ||
* [[Documentation/Nightly/Extensions/FinslerTractography|Finsler Tractography]] | * [[Documentation/Nightly/Extensions/FinslerTractography|Finsler Tractography]] | ||
| − | <span id=' | + | <span id='Extensions_by_category_Training'></span> |
== Training == | == Training == | ||
* [[Documentation/Nightly/Extensions/PerkTutor|Perk Tutor]] | * [[Documentation/Nightly/Extensions/PerkTutor|Perk Tutor]] | ||
| − | <span id=' | + | <span id='Extensions_by_category_Utilities'></span> |
== Utilities == | == Utilities == | ||
* [[Documentation/Nightly/Extensions/ThingiverseBrowser|Thingiverse Browser]] | * [[Documentation/Nightly/Extensions/ThingiverseBrowser|Thingiverse Browser]] | ||
| − | <span id=' | + | <span id='Extensions_by_category_Vascular_Modeling_Toolkit'></span> |
== Vascular Modeling Toolkit == | == Vascular Modeling Toolkit == | ||
* [http://slicer.vmtk.org/ VMTK] | * [http://slicer.vmtk.org/ VMTK] | ||
| − | <span id=' | + | <span id='Extensions_by_category_Wizards'></span> |
== Wizards == | == Wizards == | ||
* [[Documentation/Nightly/Extensions/ChangeTracker|Change Tracker]] | * [[Documentation/Nightly/Extensions/ChangeTracker|Change Tracker]] | ||
Revision as of 18:52, 20 April 2015
- Modules by category
- Modules by name
- Modules by contributing organization
- Modules by contributing individual
- Modules by type
- Modules by extension
- Extensions by category
- Extensions by name
- Extensions by contributing organization
- Extensions by contributing individual
List of extensions known to be broken
Modules by category
36 categories:
- BRAINS
- Cardiac MRI Toolkit
- CMF Registration
- Converters
- Developer Tools
- Diffusion
- Editor Effects
- Editor Effect
- Endoscopy
- Examples
- Exporter
- Filtering
- IGT
- Informatics
- Legacy
- Mesh Generation
- Mesh Generation
- Microscopy
- Multi Volume Support
- Perk Tutor
- Plastimatch
- Quantification
- Radiotherapy
- Registration
- Segmentation
- Sequences
- Shape Analysis
- Slicelets
- Surface Models
- Testing
- Unspecified
- Utilities
- Vascular Modeling Toolkit
- Wizards
- Work in Progress
- XNATSlicer
BRAINS
LabelStatistics
- BRAINSLabel Stats (cli, built-in)
Cardiac MRI Toolkit
- CMRToolkit Connected Threshold Filter (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Isolated Connected Filter (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Wizard (scripted, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Inhomogeneity Correction (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit PVAntrum Cut (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Axial Dilate (cli, bundled in Cardiac MRI Toolkit extension)
- Scar Visualization (scripted, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Boolean REMOVEFilter (cli, bundled in Cardiac MRI Toolkit extension)
- LASegmentation Workflow (scripted, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Automatic Left Atrial Scar (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Registration (scripted, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Registration BRAINSFit (scripted, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit LASegmentation Graph Cuts (cli, bundled in Cardiac MRI Toolkit extension)
CMF Registration
- Apply Matrix (cli, bundled in CMFreg extension)
- Landmark Registration (scripted, bundled in CMFreg extension)
- Surface Registration (scripted, bundled in CMFreg extension)
- Label Extraction (cli, bundled in CMFreg extension)
- Label Addition (cli, bundled in CMFreg extension)
- Downsize (cli, bundled in CMFreg extension)
Voxelbase Registration
- Mask Creation (cli, bundled in CMFreg extension)
- Non Growing (cli, bundled in CMFreg extension)
- Growing (cli, bundled in CMFreg extension)
Converters
- Vector To Scalar Volume (scripted, built-in)
- Crop Volume (loadable, built-in)
- Orient Scalar Volume (cli, built-in)
- Quad Edge Surface Mesher (cli, bundled in Slicer Prostate extension)
- Create DICOMSeries (cli, built-in)
Developer Tools
- Event Broker
- Execution Model Tour (cli, built-in)
- Double Arrays (loadable, built-in)
- Py Dev Remote Debug (scripted, bundled in Py Dev Remote Debug extension)
- Cameras (loadable, built-in)
- Developer Tools For Extensions (scripted, bundled in Developer Tools For Extensions extension)
- Extension Wizard (scripted, built-in)
- Image Maker (cli, bundled in Image Maker extension)
DICOM Plugins
- DICOMLongitudinal PETCTPlugin
- DICOMRWVMPlugin
- Multi Volume Importer Plugin
- DICOMPETSUVPlugin
- DICOMDiffusion Volume Plugin
- Dicom Rt Import Export Plugin
- DICOMSegmentation Plugin
- Dicom Sro Import Plugin
- DICOMScalar Volume Plugin
- DICOMSlicer Data Bundle Plugin
Editor Extensions
- Binary Watershed Effect (scripted, bundled in IASEM extension)
- Fast Grow Cut Effect (scripted, bundled in Fast Grow Cut Effect extension)
- Carrera Slice Effect (scripted, bundled in Carrera Slice extension)
- Double Threshold Effect (scripted, bundled in IASEM extension)
- PETTumor Segmentation Effect (scripted, bundled in PETTumor Segmentation extension)
Matlab
- Matlab Commander (cli, bundled in Matlab Bridge extension)
- Matlab Module Generator (loadable, bundled in Matlab Bridge extension)
Diffusion
- Tractography Display (loadable, built-in)
- DICOM2Full Brain Tractography (scripted, built-in)
Diffusion Data Conversion
- DWIConvert (cli, built-in)
Diffusion Tensor Images
- Resample DTIVolume (cli, built-in)
- Diffusion Tensor Scalar Measurements (cli, built-in)
- Tractography Label Map Seeding (cli, built-in)
- Tractography Interactive Seeding (loadable, built-in)
Diffusion Weighted Images
- DWIRician LMMSEFilter (cli, built-in)
- Resample Scalar Vector DWIVolume (cli, built-in)
- DWITo DTIEstimation (cli, built-in)
- DWIJoint Rician LMMSEFilter (cli, built-in)
- Finsler Backtracing (cli, bundled in Finsler Tractography extension)
- Finsler Tractography (cli, bundled in Finsler Tractography extension)
- Diffusion Weighted Volume Masking (cli, built-in)
FiberAnalysis
- Fiber Compare (cli, bundled in DTIAtlas Fiber Analyzer extension)
- DTIAtlas Fiber Analyzer (cli, bundled in DTIAtlas Fiber Analyzer extension)
- Merge Stat With Fiber (cli, bundled in DTIAtlas Fiber Analyzer extension)
- dtitractstat (cli, bundled in DTIAtlas Fiber Analyzer extension)
Tractography
- Fiber Bundle To Label Map (scripted, built-in)
- Fiber Tract Measurements (cli, built-in)
- Fiber Bundle Label Select (cli, built-in)
Editor Effects
- Window Level Effect (scripted, bundled in Window Level Effect extension)
EditorEffect
- PETTumor Segmentation (loadable, bundled in PETTumor Segmentation extension)
Endoscopy
- Endoscopy (scripted, built-in)
Examples
- Fast Grow Cut (loadable, bundled in Fast Grow Cut Effect extension)
- Fast Grow Cut Segmenter (loadable, bundled in Carrera Slice extension)
- Carrera Slice (loadable, bundled in Carrera Slice extension)
Exporter
- Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)
Filtering
- Extract Skeleton (cli, built-in)
- Threshold Scalar Volume (cli, built-in)
- Segmentation Smoothing (cli, bundled in Slicer Prostate extension)
- N4ITKBias Field Correction (cli, built-in)
- Simple Filters (scripted, built-in)
- Image Label Combine (cli, built-in)
- Voting Binary Hole Filling Image Filter (cli, built-in)
- Histogram Matching (cli, built-in)
- Checker Board Filter (cli, built-in)
Arithmetic
- Multiply Scalar Volumes (cli, built-in)
- Add Scalar Volumes (cli, built-in)
- Cast Scalar Volume (cli, built-in)
- Subtract Scalar Volumes (cli, built-in)
- Mask Scalar Volume (cli, built-in)
Denoising
- Gradient Anisotropic Diffusion (cli, built-in)
- Median Image Filter (cli, built-in)
- Gaussian Blur Image Filter (cli, built-in)
- Curvature Anisotropic Diffusion (cli, built-in)
Morphology
- Grayscale Fill Hole Image Filter (cli, built-in)
- Grayscale Grind Peak Image Filter (cli, built-in)
IGT
- Light Weight Robot IGT (loadable, bundled in Light Weight Robot IGT extension)
- Volume Reslice Driver (loadable, bundled in Slicer IGT extension)
- Collect Fiducials (loadable, bundled in Slicer IGT extension)
- Create Models (loadable, bundled in Slicer IGT extension)
- Open IGTLink IF (loadable, built-in)
- Tracker Stabilizer (loadable, bundled in Tracker Stabilizer extension)
- Path Explorer (loadable, bundled in Slicer IGT extension)
- Ultrasound Snapshots (loadable, bundled in Slicer IGT extension)
- Transform Fusion (loadable, bundled in Slicer IGT extension)
- Breach Warning (loadable, bundled in Slicer IGT extension)
- Markups To Model (loadable, bundled in Slicer IGT extension)
- Gyro Guide (scripted, bundled in Gyro Guide extension)
- Fiducial Registration Wizard (loadable, bundled in Slicer IGT extension)
- Watchdog (loadable, bundled in Slicer IGT extension)
- Open IGTLink Remote (loadable, bundled in Slicer IGT extension)
- Plus Remote (scripted, bundled in Slicer IGT extension)
- i Gyne (scripted, bundled in i Gyne extension)
- Model Registration (scripted, bundled in Slicer IGT extension)
- Fiducials To Model Registration (scripted, bundled in Slicer IGT extension)
- Needle Finder (scripted, bundled in Needle Finder extension)
- Pivot Calibration (loadable, bundled in Slicer IGT extension)
- Corner Annotation (scripted, bundled in Corner Annotation extension)
Informatics
- Annotations (loadable, built-in)
- Markups (loadable, built-in)
- Units (loadable, built-in)
- DICOM (scripted, built-in)
- Sample Data (scripted, built-in)
- Data (loadable, built-in)
- Colors (loadable, built-in)
- Curve Maker (scripted, bundled in Curve Maker extension)
- Subject Hierarchy (loadable, built-in)
- TCIABrowser (scripted, bundled in TCIABrowser extension)
Legacy
Converters
- BSpline To Deformation Field (cli, built-in)
Diffusion
Denoising
- DWIUnbiased Non Local Means Filter (cli, built-in)
Diffusion Data Conversion
- DTIimport (cli, built-in)
- DTIexport (cli, built-in)
Filtering
- Otsu Threshold Image Filter (cli, built-in)
- Resample Scalar Volume (cli, built-in)
Registration
- Test Grid Transform Registration (cli, built-in)
- Expert Automated Registration (cli, built-in)
Work in Progress
Diffusion Tensor
Test
- Diffusion Tensor Test (cli, built-in)
Mesh Generation
- Cleaver CLI (cli, bundled in Cleaver Extension extension)
MeshGeneration
- Body Centric Cubic Mesh (cli, bundled in CBC 3D I2MConversion extension)
- Mesh Compression (cli, bundled in CBC 3D I2MConversion extension)
Microscopy
- Bin Shrink (cli, bundled in IASEM extension)
- Label Object Statistics (scripted, bundled in IASEM extension)
- Spacing Aware Curvature Diffusion (cli, bundled in IASEM extension)
- IASEMImport (cli, bundled in IASEM extension)
- IASEMImport Series (cli, bundled in IASEM extension)
MultiVolume Support
- Multi Volume Explorer (loadable, built-in)
- Multi Volume Importer (scripted, built-in)
Perk Tutor
- Python Metrics Calculator (scripted, bundled in Perk Tutor extension)
- Workflow Segmentation (loadable, bundled in Perk Tutor extension)
- Transform Recorder (loadable, bundled in Perk Tutor extension)
- Perk Evaluator (loadable, bundled in Perk Tutor extension)
Plastimatch
- Dicom Sro Export (scripted, bundled in Slicer RT extension)
- Plm Register (scripted, bundled in Slicer RT extension)
Registration
- plastimatch slicer bspline (cli, bundled in Slicer RT extension)
- plastimatch slicer landwarp (cli, bundled in Slicer RT extension)
Utilities
- Plastimatch Py (loadable, bundled in Slicer RT extension)
Quantification
- Quantitative Indices CLI (cli, bundled in PET-Indi C extension)
- PETStandard Uptake Value Computation (cli, built-in)
- SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
- Spinal Curvature Measurement (scripted, bundled in Scoliosis extension)
- PETIndi C (scripted, bundled in PET-Indi C extension)
- d Pet Brain Quantification (scripted, bundled in Pet Spect Analysis extension)
- Pk Modeling (cli, bundled in Pk Modeling extension)
- Heterogeneity CAD (scripted, bundled in Open CAD extension)
- Label Statistics (scripted, built-in)
- T1 Mapping (scripted, bundled in T1 Mapping extension)
- PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
- Dice Computation (loadable, bundled in Dice Computation extension)
- Data Probe (scripted, built-in)
- Quantitative Indices Tool (scripted, bundled in PET-Indi C extension)
ChangeQuantification
- Intensity Difference Metric (cli, bundled in Change Tracker extension)
Radiotherapy
- Beams (loadable, bundled in Slicer RT extension)
- Dvh Comparison (scripted, bundled in Slicer RT extension)
- Isodose (loadable, bundled in Slicer RT extension)
- Dose Accumulation (loadable, bundled in Slicer RT extension)
- Dicom Sro Import (loadable, bundled in Slicer RT extension)
- Planar Image (loadable, bundled in Slicer RT extension)
Registration
- BRAINSResample (cli, built-in)
- Transforms (loadable, built-in)
- BRAINSResize (cli, built-in)
- Perform Metric Test (cli, built-in)
- BRAINSFit (cli, built-in)
- PBNRR (cli, bundled in PBNRR extension)
Label Registration
- Distance Map Based Registration (scripted, bundled in Slicer Prostate extension)
Specialized
- ACPCTransform (cli, built-in)
- Fiducial Registration (cli, built-in)
- VBRAINSDemon Warp (cli, built-in)
- BRAINSDemon Warp (cli, built-in)
- Reformat (loadable, built-in)
Segmentation
- Airway Segmentation (scripted, bundled in Airway Segmentation extension)
- Editor (scripted, built-in)
- EMSegment Quick (loadable, built-in)
- Skull Stripper (cli, bundled in Skull Stripper extension)
- Simple Region Growing Segmentation (cli, built-in)
- EMSegment (loadable, built-in)
- Segment CAD (scripted, bundled in Open CAD extension)
- Airway Segmentation CLI (cli, bundled in Airway Segmentation extension)
- LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
- Sobolev Segmenter (cli, bundled in Sobolev Segmenter extension)
- Volume Clip With Model (scripted, bundled in Volume Clip extension)
- Wasp (scripted, bundled in Wasp extension)
- Swiss Skull Stripper (cli, bundled in Swiss Skull Stripper extension)
- Intensity Segmenter (cli, bundled in Intensity Segmenter extension)
Specialized
- EMSegment Command Line (cli, built-in)
- Robust Statistics Segmenter (cli, built-in)
- BRAINSROIAuto (cli, built-in)
Sequences
- Metafile Importer (loadable, bundled in Sequences extension)
- Sequence Browser (loadable, bundled in Sequences extension)
- Sequences (loadable, bundled in Sequences extension)
Shape Analysis
- Mesh To Label Map (cli, bundled in Mesh To Label Map extension)
Slicelets
- Gel Dosimetry Analysis Algo (loadable, bundled in Gel Dosimetry Analysis extension)
Surface Models
- Model To Label Map (cli, built-in)
- Probe Volume With Model (cli, built-in)
- Merge Models (cli, built-in)
- Surface Toolbox (scripted, built-in)
- Grayscale Model Maker (cli, built-in)
- Label Map Smoothing (cli, built-in)
- Model Maker (cli, built-in)
Testing
- Slicer MRBTest
- Self Tests
- CLIROITest (cli, built-in)
- CLI4Test
- Threshold Threading Test
- Scoliosis Monitoring (scripted, bundled in Scoliosis extension)
- Performance Tests
IGT Tests
- Watchdog Self Test
- Breach Warning Self Test
TestCases
- Slice Link Logic (scripted, built-in)
- Atlas Tests
- RSNAQuant Tutorial
- Volume Rendering Scene Close (scripted, built-in)
- test tractography display
- slicer Close Crash Bug2590
- Subject Hierarchy Generic Self Test
- Charting (scripted, built-in)
- Scene Performance (scripted, built-in)
- Neurosurgical Planning Tutorial Markups Self Test
- Markups In Compare Viewers Self Test
- Cardiac Agatston Measures (scripted, bundled in Cardiac Agaston Measures extension)
- fiber visibility crash2438
- scene Import2428
- RSNAVis Tutorial
- JRC2013Vis
- RSNA2012Prostate Demo
- Add Many Markups Fiducial Test
- Colors Scalar Bar Self Test
- Markups In Views Self Test
- View Controllers Slice Interpolation Bug1926
- Change Tracker Self Test
- Fiducial Layout Switch Bug1914
- Subject Hierarchy Core Plugins Self Test
- Slicer4Minute (scripted, built-in)
- Crop Volume Self Test
- label Toggle Bug2049
Unspecified
- BRAINSDWICleanup (cli, built-in)
Utilities
- Thingiverse Browser (scripted, bundled in Thingiverse Browser extension)
- BRAINSStrip Rotation (cli, built-in)
- EMSegment Transform To New Format (cli, built-in)
- Data Store (loadable, built-in)
BRAINS
- BRAINSTransform Convert (cli, built-in)
Vascular Modeling Toolkit
- Vesselness Filtering (scripted, bundled in VMTK extension)
- Centerline Computation (scripted, bundled in VMTK extension)
- Level Set Segmentation (scripted, bundled in VMTK extension)
Wizards
- Compare Volumes (scripted, bundled in CMFreg extension)
- Change Tracker (scripted, bundled in Change Tracker extension)
Work in Progress
- Longitudinal PETCT (loadable, bundled in Longitudinal PETCT extension)
Converters
- Label To DICOMSEGConverter (scripted, bundled in Reporting extension)
Informatics
TestCases
- Reporting Self Test
- Label To DICOMSEGConverter Self Test
XNATSlicer
- Xnat Slicer (scripted, bundled in XNATSlicer extension)
Extensions by category
25 categories:
- Cardiac
- Cardiac MRI toolkit
- Converters
- Developer Tools
- Diffusion
- Editor Effects
- Exporter
- IGT
- Informatics
- Mesh Generation
- Microscopy
- Nuclear Medicine
- Quantification
- Radiotherapy
- Registration
- Remote
- Scoliosis
- Segmentation
- Sequences
- Shape Analysis
- Tractography
- Training
- Utilities
- Vascular Modeling Toolkit
- Wizards
Cardiac
Cardiac MRI toolkit
Converters
Developer Tools
Diffusion
Editor Effects
Exporter
IGT
- Light Weight Robot IGT
- Port Placement
- Gyro Guide
- Corner Annotation
- Slicer IGT
- Percutaneous Approach Analysis
- Needle Finder
- Tracker Stabilizer
- i Gyne
- Resection Planner
Informatics
Mesh Generation
Microscopy
Nuclear Medicine
Quantification
Radiotherapy
Registration
Remote
Scoliosis
Segmentation
- Open CAD
- Swiss Skull Stripper
- Carrera Slice
- Skull Stripper
- PETTumor Segmentation
- LAScar Segmenter
- Wasp
- Airway Segmentation
- Sobolev Segmenter
- Fast Grow Cut Effect
- Intensity Segmenter
- Volume Clip
Sequences
Shape Analysis
Tractography
Training
Utilities
Vascular Modeling Toolkit
