Difference between revisions of "Documentation/Nightly/ModuleExtensionListing"

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<noinclude>{{:Documentation/Nightly/ModuleExtensionListing/TOC}}</noinclude>
 
<noinclude>{{:Documentation/Nightly/ModuleExtensionListing/TOC}}</noinclude>
 
= Modules by category =
 
= Modules by category =
−
38 categories:
+
46 categories:
 +
* [[#Modules_by_category_Astronomy|Astronomy]]
 
* [[#Modules_by_category_Cardiac|Cardiac]]
 
* [[#Modules_by_category_Cardiac|Cardiac]]
 
* [[#Modules_by_category_Cardiac_MRI_Toolkit|Cardiac MRI Toolkit]]
 
* [[#Modules_by_category_Cardiac_MRI_Toolkit|Cardiac MRI Toolkit]]
 
* [[#Modules_by_category_Chest_Imaging_Platform|Chest Imaging Platform]]
 
* [[#Modules_by_category_Chest_Imaging_Platform|Chest Imaging Platform]]
 
** [[#Modules_by_category_Chest_Imaging_Platform_Toolkit|Toolkit]]
 
** [[#Modules_by_category_Chest_Imaging_Platform_Toolkit|Toolkit]]
−
*** [[#Modules_by_category_Toolkit_General|General]]
 
 
*** [[#Modules_by_category_Toolkit_Particles|Particles]]
 
*** [[#Modules_by_category_Toolkit_Particles|Particles]]
 
*** [[#Modules_by_category_Toolkit_Processing|Processing]]
 
*** [[#Modules_by_category_Toolkit_Processing|Processing]]
Line 20: Line 20:
 
** [[#Modules_by_category_Developer_Tools_Editor_Extensions|Editor Extensions]]
 
** [[#Modules_by_category_Developer_Tools_Editor_Extensions|Editor Extensions]]
 
** [[#Modules_by_category_Developer_Tools_Matlab|Matlab]]
 
** [[#Modules_by_category_Developer_Tools_Matlab|Matlab]]
 +
** [[#Modules_by_category_Developer_Tools_Segment_Editor_Extensions|Segment Editor Extensions]]
 +
** [[#Modules_by_category_Developer_Tools_Utils|Utils]]
 
* [[#Modules_by_category_Diffusion|Diffusion]]
 
* [[#Modules_by_category_Diffusion|Diffusion]]
 
** [[#Modules_by_category_Diffusion_Diffusion_Data_Conversion|Diffusion Data Conversion]]
 
** [[#Modules_by_category_Diffusion_Diffusion_Data_Conversion|Diffusion Data Conversion]]
 
** [[#Modules_by_category_Diffusion_Diffusion_Tensor_Images|Diffusion Tensor Images]]
 
** [[#Modules_by_category_Diffusion_Diffusion_Tensor_Images|Diffusion Tensor Images]]
 
** [[#Modules_by_category_Diffusion_Diffusion_Weighted_Images|Diffusion Weighted Images]]
 
** [[#Modules_by_category_Diffusion_Diffusion_Weighted_Images|Diffusion Weighted Images]]
−
** [[#Modules_by_category_Diffusion_FiberAnalysis|Fiber Analysis]]
+
** [[#Modules_by_category_Diffusion_Import_and_Export|Import and Export]]
 +
** [[#Modules_by_category_Diffusion_Process|Process]]
 +
** [[#Modules_by_category_Diffusion_Quantify|Quantify]]
 
** [[#Modules_by_category_Diffusion_Tractography|Tractography]]
 
** [[#Modules_by_category_Diffusion_Tractography|Tractography]]
 +
*** [[#Modules_by_category_Tractography_Region-based|Region-based]]
 +
** [[#Modules_by_category_Diffusion_Utilities|Utilities]]
 
* [[#Modules_by_category_Editor_Effects|Editor Effects]]
 
* [[#Modules_by_category_Editor_Effects|Editor Effects]]
−
* [[#Modules_by_category_EditorEffect|Editor Effect]]
+
* [[#Modules_by_category_EditorEffect|EditorEffect]]
 
* [[#Modules_by_category_Endoscopy|Endoscopy]]
 
* [[#Modules_by_category_Endoscopy|Endoscopy]]
 
* [[#Modules_by_category_Examples|Examples]]
 
* [[#Modules_by_category_Examples|Examples]]
Line 38: Line 44:
 
* [[#Modules_by_category_IGT|IGT]]
 
* [[#Modules_by_category_IGT|IGT]]
 
* [[#Modules_by_category_Informatics|Informatics]]
 
* [[#Modules_by_category_Informatics|Informatics]]
 +
** [[#Modules_by_category_Informatics_Converters|Converters]]
 
* [[#Modules_by_category_Legacy|Legacy]]
 
* [[#Modules_by_category_Legacy|Legacy]]
 
** [[#Modules_by_category_Legacy_Converters|Converters]]
 
** [[#Modules_by_category_Legacy_Converters|Converters]]
−
** [[#Modules_by_category_Legacy_Diffusion|Diffusion]]
 
−
*** [[#Modules_by_category_Diffusion_Denoising|Denoising]]
 
−
*** [[#Modules_by_category_Diffusion_Diffusion_Data_Conversion|Diffusion Data Conversion]]
 
 
** [[#Modules_by_category_Legacy_Filtering|Filtering]]
 
** [[#Modules_by_category_Legacy_Filtering|Filtering]]
 
** [[#Modules_by_category_Legacy_Registration|Registration]]
 
** [[#Modules_by_category_Legacy_Registration|Registration]]
Line 48: Line 52:
 
*** [[#Modules_by_category_Work_in_Progress_Diffusion_Tensor|Diffusion Tensor]]
 
*** [[#Modules_by_category_Work_in_Progress_Diffusion_Tensor|Diffusion Tensor]]
 
**** [[#Modules_by_category_Diffusion_Tensor_Test|Test]]
 
**** [[#Modules_by_category_Diffusion_Tensor_Test|Test]]
 +
* [[#Modules_by_category_Libraries|Libraries]]
 +
* [[#Modules_by_category_Machine_Learning|Machine Learning]]
 
* [[#Modules_by_category_Margin_Calculator|Margin Calculator]]
 
* [[#Modules_by_category_Margin_Calculator|Margin Calculator]]
 
* [[#Modules_by_category_Mesh_Generation|Mesh Generation]]
 
* [[#Modules_by_category_Mesh_Generation|Mesh Generation]]
−
* [[#Modules_by_category_MeshGeneration|Mesh Generation]]
+
* [[#Modules_by_category_MeshGeneration|MeshGeneration]]
 
* [[#Modules_by_category_Microscopy|Microscopy]]
 
* [[#Modules_by_category_Microscopy|Microscopy]]
−
* [[#Modules_by_category_MultiVolume_Support|Multi Volume Support]]
+
* [[#Modules_by_category_MultiVolume_Support|MultiVolume Support]]
 +
* [[#Modules_by_category_Pathology|Pathology]]
 
* [[#Modules_by_category_Perk_Tutor|Perk Tutor]]
 
* [[#Modules_by_category_Perk_Tutor|Perk Tutor]]
 
* [[#Modules_by_category_Plastimatch|Plastimatch]]
 
* [[#Modules_by_category_Plastimatch|Plastimatch]]
Line 58: Line 65:
 
** [[#Modules_by_category_Plastimatch_Utilities|Utilities]]
 
** [[#Modules_by_category_Plastimatch_Utilities|Utilities]]
 
* [[#Modules_by_category_Quantification|Quantification]]
 
* [[#Modules_by_category_Quantification|Quantification]]
−
** [[#Modules_by_category_Quantification_ChangeQuantification|Change Quantification]]
+
** [[#Modules_by_category_Quantification_ChangeQuantification|ChangeQuantification]]
 +
* [[#Modules_by_category_Radiology|Radiology]]
 
* [[#Modules_by_category_Radiotherapy|Radiotherapy]]
 
* [[#Modules_by_category_Radiotherapy|Radiotherapy]]
 
* [[#Modules_by_category_Registration|Registration]]
 
* [[#Modules_by_category_Registration|Registration]]
 +
** [[#Modules_by_category_Registration_CMF_Registration|CMF Registration]]
 +
*** [[#Modules_by_category_CMF_Registration_Voxelbase_Registration|Voxelbase Registration]]
 
** [[#Modules_by_category_Registration_Label_Registration|Label Registration]]
 
** [[#Modules_by_category_Registration_Label_Registration|Label Registration]]
 
** [[#Modules_by_category_Registration_Specialized|Specialized]]
 
** [[#Modules_by_category_Registration_Specialized|Specialized]]
Line 66: Line 76:
 
** [[#Modules_by_category_Segmentation_Specialized|Specialized]]
 
** [[#Modules_by_category_Segmentation_Specialized|Specialized]]
 
* [[#Modules_by_category_Sequences|Sequences]]
 
* [[#Modules_by_category_Sequences|Sequences]]
−
* [[#Modules_by_category_Shape_Analysis|Shape Analysis]]
 
−
** [[#Modules_by_category_Shape_Analysis_CMF_Registration|CMF Registration]]
 
−
*** [[#Modules_by_category_CMF_Registration_Voxelbase_Registration|Voxelbase Registration]]
 
 
* [[#Modules_by_category_Slicelets|Slicelets]]
 
* [[#Modules_by_category_Slicelets|Slicelets]]
 +
* [[#Modules_by_category_SlicerProstate|SlicerProstate]]
 
* [[#Modules_by_category_Surface_Models|Surface Models]]
 
* [[#Modules_by_category_Surface_Models|Surface Models]]
−
* [[#Modules_by_category_TestCases|Test Cases]]
+
* [[#Modules_by_category_TestCases|TestCases]]
 
* [[#Modules_by_category_Testing|Testing]]
 
* [[#Modules_by_category_Testing|Testing]]
 
** [[#Modules_by_category_Testing_IGT_Tests|IGT Tests]]
 
** [[#Modules_by_category_Testing_IGT_Tests|IGT Tests]]
−
** [[#Modules_by_category_Testing_SlicerRT_Tests|Slicer RT Tests]]
+
** [[#Modules_by_category_Testing_SlicerRT_Tests|SlicerRT Tests]]
−
** [[#Modules_by_category_Testing_TestCases|Test Cases]]
+
** [[#Modules_by_category_Testing_TestCases|TestCases]]
 +
* [[#Modules_by_category_Ultrasound|Ultrasound]]
 +
* [[#Modules_by_category_Uncategorized|Uncategorized]]
 
* [[#Modules_by_category_Utilities|Utilities]]
 
* [[#Modules_by_category_Utilities|Utilities]]
 
** [[#Modules_by_category_Utilities_BRAINS|BRAINS]]
 
** [[#Modules_by_category_Utilities_BRAINS|BRAINS]]
 
* [[#Modules_by_category_Vascular_Modeling_Toolkit|Vascular Modeling Toolkit]]
 
* [[#Modules_by_category_Vascular_Modeling_Toolkit|Vascular Modeling Toolkit]]
 +
* [[#Modules_by_category_Virtual_Reality|Virtual Reality]]
 +
* [[#Modules_by_category_Web_System_Tools|Web System Tools]]
 
* [[#Modules_by_category_Wizards|Wizards]]
 
* [[#Modules_by_category_Wizards|Wizards]]
−
* [[#Modules_by_category_Work_in_Progress|Work in Progress]]
+
* [[#Modules_by_category_XNATSlicer|XNATSlicer]]
 +
<span id='Modules_by_category_Astronomy'></span>
 +
== Astronomy ==
 +
* [[Documentation/Nightly/Modules/AstroVolume|AstroVolume]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
 +
* [[Documentation/Nightly/Modules/AstroReproject|AstroReproject]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
 +
* [[Documentation/Nightly/Modules/AstroStatistics|AstroStatistics]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
 +
* [[Documentation/Nightly/Modules/AstroMasking|AstroMasking]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
 +
* [[Documentation/Nightly/Modules/AstroSmoothing|AstroSmoothing]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
 +
* [[Documentation/Nightly/Modules/AstroSampleData|AstroSampleData]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
 +
* [[Documentation/Nightly/Modules/AstroProfiles|AstroProfiles]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
 +
* [[Documentation/Nightly/Modules/AstroMomentMaps|AstroMomentMaps]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
 +
* [[Documentation/Nightly/Modules/AstroPVSlice|AstroPVSlice]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
 +
* [[Documentation/Nightly/Modules/AstroPVDiagram|AstroPVDiagram]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
 +
* [[Documentation/Nightly/Modules/AstroModeling|AstroModeling]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
 +
* [[Documentation/Nightly/Modules/AstroWelcome|AstroWelcome]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
 +
* [[Documentation/Nightly/Modules/SlicerAstroDataProbe|SlicerAstroDataProbe]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
 
<span id='Modules_by_category_Cardiac'></span>
 
<span id='Modules_by_category_Cardiac'></span>
 +
 
== Cardiac ==
 
== Cardiac ==
−
* [[Documentation/Nightly/Extensions/SlicerHeart|Valve View]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerHeart|Slicer Heart]] extension)</small>
+
* [[Documentation/Nightly/Extensions/SlicerHeart|Philips4dUsDicomPatcher]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerHeart|SlicerHeart]] extension)</small>
−
* [[Documentation/Nightly/Extensions/SlicerHeart|Philips4d Us Dicom Patcher]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerHeart|Slicer Heart]] extension)</small>
+
* [[Documentation/Nightly/Extensions/SlicerHeart|ValveView]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerHeart|SlicerHeart]] extension)</small>
 
<span id='Modules_by_category_Cardiac_MRI_Toolkit'></span>
 
<span id='Modules_by_category_Cardiac_MRI_Toolkit'></span>
 
== Cardiac MRI Toolkit ==
 
== Cardiac MRI Toolkit ==
−
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit PVAntrum Cut]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkitPVAntrumCut]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac_MRI_Toolkit] extension)</small>
−
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Boolean REMOVEFilter]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkitBooleanREMOVEFilter]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac_MRI_Toolkit] extension)</small>
−
* [[Documentation/Nightly/Modules/LASegmentationWorkflow|LASegmentation Workflow]]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [[Documentation/Nightly/Modules/LASegmentationWorkflow|LASegmentationWorkflow]]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac_MRI_Toolkit] extension)</small>
−
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration BRAINSFit]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkitRegistrationBRAINSFit]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac_MRI_Toolkit] extension)</small>
−
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Automatic Left Atrial Scar]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkitAutomaticLeftAtrialScar]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac_MRI_Toolkit] extension)</small>
−
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Connected Threshold Filter]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkitConnectedThresholdFilter]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac_MRI_Toolkit] extension)</small>
−
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Wizard]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkitWizard]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac_MRI_Toolkit] extension)</small>
−
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Isolated Connected Filter]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkitIsolatedConnectedFilter]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac_MRI_Toolkit] extension)</small>
−
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Inhomogeneity Correction]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkitInhomogeneityCorrection]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac_MRI_Toolkit] extension)</small>
−
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Axial Dilate]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkitAxialDilate]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac_MRI_Toolkit] extension)</small>
−
* [[Documentation/Nightly/Modules/ScarVisualization|Scar Visualization]]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [[Documentation/Nightly/Modules/ScarVisualization|ScarVisualization]]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac_MRI_Toolkit] extension)</small>
−
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkitRegistration]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac_MRI_Toolkit] extension)</small>
−
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit LASegmentation Graph Cuts]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkitLASegmentationGraphCuts]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac_MRI_Toolkit] extension)</small>
 
<span id='Modules_by_category_Chest_Imaging_Platform'></span>
 
<span id='Modules_by_category_Chest_Imaging_Platform'></span>
 
== Chest Imaging Platform ==
 
== Chest Imaging Platform ==
−
* [http://www.chestimagingplatform.org Interactive Lobe Segmentation]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org CIP_MIPViewer]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org CIP_BodyComposition]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org CIP_InteractiveLobeSegmentation]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org CIP_TracheaStentPlanning]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org CIP_LesionModel]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org AirwayInspector]    <small>(loadable, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org CIP_PAARatio]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org CIP_CalciumScoring]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org CIP_ParenchymaAnalysis]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org CIP_ParenchymaSubtypeTraining]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org CIP_PointsLabelling]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 
<span id='Modules_by_category_Chest_Imaging_Platform_Toolkit'></span>
 
<span id='Modules_by_category_Chest_Imaging_Platform_Toolkit'></span>
 
=== Toolkit ===
 
=== Toolkit ===
−
<span id='Modules_by_category_Toolkit_General'></span>
 
−
==== General ====
 
−
* [http://www.chestimagingplatform.org Execute System Command]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
 
 
<span id='Modules_by_category_Toolkit_Particles'></span>
 
<span id='Modules_by_category_Toolkit_Particles'></span>
 
==== Particles ====
 
==== Particles ====
−
* [http://www.chestimagingplatform.org Scour Particle Data]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org ExtractParticlesFromChestRegionChestType]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Extract Particles From Chest Region Chest Type]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org FilterVesselParticleData]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Filter Vessel Particle Data]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org RemoveParticlesFromParticlesDataSet]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Remove Particles From Particles Data Set]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org PerturbParticles]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Merge Particle Data Sets]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org MergeParticleDataSets]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Perturb Particles]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org FilterAirwayParticleData]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Filter Airway Particle Data]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org FitLobeSurfaceModelsToParticleData]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Transfer Field Data To From Point Data]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org ClassifyFissureParticles]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Fit Lobe Surface Models To Particle Data]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org GenerateStenciledLabelMapFromParticles]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Classify Fissure Particles]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org FilterFissureParticleData]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Generate Stenciled Label Map From Particles]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
 
−
* [http://www.chestimagingplatform.org Filter Fissure Particle Data]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
 
 
<span id='Modules_by_category_Toolkit_Processing'></span>
 
<span id='Modules_by_category_Toolkit_Processing'></span>
 
==== Processing ====
 
==== Processing ====
−
* [http://www.chestimagingplatform.org Resample Label Map]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org ResampleLabelMap]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Rescale Label Map]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org RescaleLabelMap]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Generate Median Filtered Image]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org GenerateMedianFilteredImage]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Label Map From Region And Type Points]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org LabelMapFromRegionAndTypePoints]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Crop Lung]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org CropLung]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Generate NLMFiltered Image]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org GenerateNLMFilteredImage]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Remove Chest Type From Label Map Using Particles]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org RemoveChestTypeFromLabelMapUsingParticles]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Generate Atlas Convex Hull]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org GenerateAtlasConvexHull]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Compute Fissure Feature Vectors]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org RemapLabelMap]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Generate Lobe Surface Models]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org ComputeFissureFeatureVectors]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Filter Connected Components]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org GenerateLobeSurfaceModels]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Extract Chest Label Map]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org FilterConnectedComponents]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Perform Morphological]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org ExtractChestLabelMap]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Extract Fissure Boundary From Lobe Map]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org PerformMorphological]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Enhance Fissures In Image]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org ExtractFissureBoundaryFromLobeMap]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Remap Label Map]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org EnhanceFissuresInImage]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Generate Distance Map From Label Map]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org GraphCutsOptimization]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Resample CT]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org GenerateDistanceMapFromLabelMap]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Compute Feature Strength]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org ResampleCT]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Compute Distance Map]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org ComputeFeatureStrength]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Quality Control]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org ComputeDistanceMap]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Generate Image Sub Volumes]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org QualityControl]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org GenerateImageSubVolumes]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 
<span id='Modules_by_category_Toolkit_Quantification'></span>
 
<span id='Modules_by_category_Toolkit_Quantification'></span>
 
==== Quantification ====
 
==== Quantification ====
−
* [http://www.chestimagingplatform.org Evaluate Lung Lobe Segmentation Results]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org EvaluateLungLobeSegmentationResults]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Get Transformation Kappa]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org GetTransformationKappa]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Read Write Image Data]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org ReadWriteImageData]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Compute Intensity Statistics]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org ComputeIntensityStatistics]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Compute Cross Sectional Area]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org ComputeCrossSectionalArea]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Label Particles By Chest Region Chest Type]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org GenerateParenchymaPhenotypes]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Get Transformation Similarity Metric]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org LabelParticlesByChestRegionChestType]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Generate Region Histograms And Parenchyma Phenotypes]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org GetTransformationSimilarityMetric]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Get Transformation Kappa2D]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org GetTransformationKappa2D]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 
<span id='Modules_by_category_Toolkit_Registration'></span>
 
<span id='Modules_by_category_Toolkit_Registration'></span>
 
==== Registration ====
 
==== Registration ====
−
* [http://www.chestimagingplatform.org Register Lung Atlas]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
*[[:Category:Documentation/Nightly/Modules/Registration|Introduction to Registration]] <small>(by Dominik Meier)</small>
−
* [http://www.chestimagingplatform.org Register Label Maps]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org RegisterLungAtlas]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Register CT]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org RegisterLabelMaps]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org RegisterCT]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 
<span id='Modules_by_category_Toolkit_Segmentation'></span>
 
<span id='Modules_by_category_Toolkit_Segmentation'></span>
 +
 
==== Segmentation ====
 
==== Segmentation ====
−
* [http://www.chestimagingplatform.org Generate Otsu Lung Cast]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org GenerateOtsuLungCast]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Segment Lung Lobes]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org SegmentLungAirways]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Generate Partial Lung Label Map]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org SegmentLungLobes]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Split Left Lung Right Lung]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org GeneratePartialLungLabelMap]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Generate Lesion Segmentation]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org GenerateSimpleLungMask]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Generate Binary Thinning3D]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org SplitLeftLungRightLung]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org GenerateBinaryThinning3D]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org GenerateLesionSegmentation]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 
<span id='Modules_by_category_Toolkit_Utils'></span>
 
<span id='Modules_by_category_Toolkit_Utils'></span>
 
==== Utils ====
 
==== Utils ====
−
* [http://www.chestimagingplatform.org Convert Dicom]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org ConvertDicom]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Region Type Locations To ROIVolume]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org RegionTypeLocationsToROIVolume]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Read VTKWrite NRRDs]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org ReadVTKWriteNRRDs]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Generate Overlay Images]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org GenerateModel]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Get Structures In Label Map]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org GenerateOverlayImages]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Find Patch Match]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org ExecuteSystemCommand]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Convert Chest Region Chest Type To Label Map Value]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org GetStructuresInLabelMap]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Mask Out Label Map Structures]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org FindPatchMatch]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Read NRRDs Write VTK]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org ConvertChestRegionChestTypeToLabelMapValue]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Convert Label Map Value To Chest Region Chest Type]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org MaskOutLabelMapStructures]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Read Write Region And Type Points]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org ReadNRRDsWriteVTK]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Merge Chest Label Maps]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org ConvertLabelMapValueToChestRegionChestType]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Read Vida Write CIP]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org ReadWriteRegionAndTypePoints]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Read Dicom Write Tags]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org MergeChestLabelMaps]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Transfer Region And Type Indices To From Points]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org ReadVidaWriteCIP]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org ReadDicomWriteTags]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org TransferRegionAndTypeIndicesToFromPoints]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 
<span id='Modules_by_category_CIP'></span>
 
<span id='Modules_by_category_CIP'></span>
 
== CIP ==
 
== CIP ==
−
* [http://www.chestimagingplatform.org CIP Common]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org CIP_]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org CIP_Common]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 
<span id='Modules_by_category_Converters'></span>
 
<span id='Modules_by_category_Converters'></span>
 
== Converters ==
 
== Converters ==
−
* [[Documentation/Nightly/Modules/QuadEdgeSurfaceMesher|Quad Edge Surface Mesher]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerProstate|Slicer Prostate]] extension)</small>
+
* [[Documentation/Nightly/Modules/QuadEdgeSurfaceMesher|QuadEdgeSurfaceMesher]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerProstate|SlicerProstate]] extension)</small>
−
* [[Documentation/Nightly/Modules/CropVolume|Crop Volume]]    <small>(loadable, built-in)</small>
+
* [[Documentation/Nightly/Modules/CropVolume|CropVolume]]    <small>(loadable, built-in)</small>
−
* [[Documentation/Nightly/Modules/OrientScalarVolume|Orient Scalar Volume]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/OrientScalarVolume|OrientScalarVolume]]    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Extensions/UKFTractography|Convert VTK]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/UKFTractography|UKFTractography]] extension)</small>
+
* [[Documentation/Nightly/Extensions/UKFTractography|ConvertVTK]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/UKFTractography|UKFTractography]] extension)</small>
−
* [[Documentation/Nightly/Modules/VectorToScalarVolume|Vector To Scalar Volume]]    <small>(scripted, built-in)</small>
+
* [[Documentation/Nightly/Modules/VectorToScalarVolume|VectorToScalarVolume]]    <small>(scripted, built-in)</small>
−
* [[Documentation/Nightly/Modules/CreateDICOMSeries|Create DICOMSeries]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/CreateDICOMSeries|CreateDICOMSeries]]    <small>(cli, built-in)</small>
−
* [http://www.chestimagingplatform.org Particles Display]    <small>(loadable, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org ParticlesDisplay]    <small>(loadable, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Region Type]    <small>(loadable, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org RegionType]    <small>(loadable, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 
<span id='Modules_by_category_Developer_Tools'></span>
 
<span id='Modules_by_category_Developer_Tools'></span>
 
== Developer Tools ==
 
== Developer Tools ==
 
* [[Documentation/Nightly/Modules/Cameras|Cameras]]    <small>(loadable, built-in)</small>
 
* [[Documentation/Nightly/Modules/Cameras|Cameras]]    <small>(loadable, built-in)</small>
−
* [[Documentation/Nightly/Modules/ExecutionModelTour|Execution Model Tour]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/ExecutionModelTour|ExecutionModelTour]]    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Extensions/DebuggingTools|Node Modified Statistics]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/DebuggingTools|Debugging Tools]] extension)</small>
+
* [[Documentation/Nightly/Extensions/DebuggingTools|NodeModifiedStatistics]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/DebuggingTools|DebuggingTools]] extension)</small>
−
* [[Documentation/Nightly/Extensions/DebuggingTools|Py Dev Remote Debug]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/DebuggingTools|Debugging Tools]] extension)</small>
+
* [[Documentation/Nightly/Extensions/DebuggingTools|PyDevRemoteDebug]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/DebuggingTools|DebuggingTools]] extension)</small>
−
* [[Documentation/Nightly/Modules/ExtensionWizard|Extension Wizard]]    <small>(scripted, built-in)</small>
+
* [[Documentation/Nightly/Modules/ExtensionWizard|ExtensionWizard]]    <small>(scripted, built-in)</small>
−
* [[Documentation/Nightly/Modules/ImageMaker|Image Maker]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/ImageMaker|Image Maker]] extension)</small>
+
* [[Documentation/Nightly/Extensions/DebuggingTools|NodeInfo]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/DebuggingTools|DebuggingTools]] extension)</small>
−
* [[Documentation/Nightly/Modules/ExtensionStats|Extension Stats]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/DeveloperToolsForExtensions|Developer Tools For Extensions]] extension)</small>
+
* [[Documentation/Nightly/Modules/ImageMaker|ImageMaker]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/ImageMaker|ImageMaker]] extension)</small>
−
* [[Documentation/Nightly/Modules/DeveloperToolsForExtensions|Developer Tools For Extensions]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/DeveloperToolsForExtensions|Developer Tools For Extensions]] extension)</small>
+
* [[Documentation/Nightly/Modules/ExtensionStats|ExtensionStats]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/DeveloperToolsForExtensions|DeveloperToolsForExtensions]] extension)</small>
−
* [[Documentation/Nightly/Modules/EventBroker|Event Broker]]
+
* [[Documentation/Nightly/Modules/DeveloperToolsForExtensions|DeveloperToolsForExtensions]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/DeveloperToolsForExtensions|DeveloperToolsForExtensions]] extension)</small>
−
* Double Arrays   <small>(loadable, built-in)</small>
+
* [[Documentation/Nightly/Modules/EventBroker|EventBroker]]
 +
* DoubleArrays   <small>(loadable, built-in)</small>
 
<span id='Modules_by_category_Developer_Tools_DICOM_Plugins'></span>
 
<span id='Modules_by_category_Developer_Tools_DICOM_Plugins'></span>
 
=== DICOM Plugins ===
 
=== DICOM Plugins ===
−
* Dicom Ultrasound Plugin
+
* DICOMParametricMapPlugin
−
* DICOMSegmentation Plugin
+
* DicomUltrasoundPlugin
−
* DICOMSlicer Data Bundle Plugin
+
* DICOMSegmentationPlugin
 +
* DICOMSlicerDataBundlePlugin
 +
* DICOMTID1500Plugin
 
* [[Documentation/Nightly/Modules/DICOMPETSUVPlugin|DICOMPETSUVPlugin]]
 
* [[Documentation/Nightly/Modules/DICOMPETSUVPlugin|DICOMPETSUVPlugin]]
−
* DICOMDiffusion Volume Plugin
+
* DICOMScalarVolumePlugin
−
* DICOMLongitudinal PETCTPlugin
+
* DICOMDiffusionVolumePlugin
−
* Dicom Sro Import Plugin
+
* DICOMLongitudinalPETCTPlugin
−
* DICOMScalar Volume Plugin
+
* DicomSroImportPlugin
 
* [[Documentation/Nightly/Modules/DICOMRWVMPlugin|DICOMRWVMPlugin]]
 
* [[Documentation/Nightly/Modules/DICOMRWVMPlugin|DICOMRWVMPlugin]]
−
* Dicom Rt Import Export Plugin
+
* DicomRtImportExportPlugin
−
* Multi Volume Importer Plugin
+
* MultiVolumeImporterPlugin
 
<span id='Modules_by_category_Developer_Tools_Editor_Extensions'></span>
 
<span id='Modules_by_category_Developer_Tools_Editor_Extensions'></span>
 
=== Editor Extensions ===
 
=== Editor Extensions ===
−
* [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect]    <small>(scripted, bundled in [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect] extension)</small>
+
* [[Documentation/4.3/Modules/FastGrowCut|FastGrowCutEffect]]    <small>(scripted, bundled in [[Documentation/4.3/Modules/FastGrowCut|FastGrowCutEffect]] extension)</small>
−
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice Effect]    <small>(scripted, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
+
* [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|CarreraSliceEffect]]    <small>(scripted, bundled in [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|CarreraSlice]] extension)</small>
−
* [[Documentation/Nightly/Modules/PETTumorSegmentationEffect|PETTumor Segmentation Effect]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PETTumorSegmentation|PETTumor Segmentation]] extension)</small>
+
* [[Documentation/Nightly/Extensions/SlicerPathology|QuickTCGAEffect]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerPathology|SlicerPathology]] extension)</small>
−
* [[Documentation/Nightly/Extensions/IASEM|Binary Watershed Effect]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small>
+
* [[Documentation/Nightly/Modules/PETTumorSegmentationEffect|PETTumorSegmentationEffect]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PETTumorSegmentation|PETTumorSegmentation]] extension)</small>
−
* [[Documentation/Nightly/Extensions/IASEM|Double Threshold Effect]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small>
+
* [[Documentation/Nightly/Extensions/IASEM|BinaryWatershedEffect]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small>
 +
* [[Documentation/Nightly/Extensions/IASEM|DoubleThresholdEffect]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small>
 +
* [[Documentation/Nightly/Extensions/SlicerPathology|ShortCutEffect]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerPathology|SlicerPathology]] extension)</small>
 
<span id='Modules_by_category_Developer_Tools_Matlab'></span>
 
<span id='Modules_by_category_Developer_Tools_Matlab'></span>
 
=== Matlab ===
 
=== Matlab ===
−
* [[Documentation/Nightly/Modules/MatlabModuleGenerator|Matlab Module Generator]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/MatlabBridge|Matlab Bridge]] extension)</small>
+
* [[Documentation/Nightly/Modules/MatlabModuleGenerator|MatlabModuleGenerator]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/MatlabBridge|MatlabBridge]] extension)</small>
−
* [[Documentation/Nightly/Modules/MatlabCommander|Matlab Commander]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/MatlabBridge|Matlab Bridge]] extension)</small>
+
* [[Documentation/Nightly/Modules/MatlabCommander|MatlabCommander]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/MatlabBridge|MatlabBridge]] extension)</small>
 +
<span id='Modules_by_category_Developer_Tools_Segment_Editor_Extensions'></span>
 +
=== Segment Editor Extensions ===
 +
* [[Documentation/Nightly/Extensions/PETTumorSegmentation|SegmentEditorPETTumor]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PETTumorSegmentation|PETTumorSegmentation]] extension)</small>
 +
<span id='Modules_by_category_Developer_Tools_Utils'></span>
 +
=== Utils ===
 +
* [[Documentation/Nightly/Extensions/SlicerProstate|SlicerProstate]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerProstate|SlicerProstate]] extension)</small>
 
<span id='Modules_by_category_Diffusion'></span>
 
<span id='Modules_by_category_Diffusion'></span>
 
== Diffusion ==
 
== Diffusion ==
−
* [[Documentation/Nightly/Modules/TractographyDisplay|Tractography Display]]   <small>(loadable, built-in)</small>
+
* [[Documentation/Nightly/Modules/DMRIInstall|DMRIInstall]]    <small>(scripted, built-in)</small>
−
* DICOM2Full Brain Tractography   <small>(scripted, built-in)</small>
 
 
<span id='Modules_by_category_Diffusion_Diffusion_Data_Conversion'></span>
 
<span id='Modules_by_category_Diffusion_Diffusion_Data_Conversion'></span>
 
=== Diffusion Data Conversion ===
 
=== Diffusion Data Conversion ===
Line 245: Line 296:
 
<span id='Modules_by_category_Diffusion_Diffusion_Tensor_Images'></span>
 
<span id='Modules_by_category_Diffusion_Diffusion_Tensor_Images'></span>
 
=== Diffusion Tensor Images ===
 
=== Diffusion Tensor Images ===
−
* Tractography Interactive Seeding    <small>(loadable, built-in)</small>
+
* [[Documentation/Nightly/Extensions/ResampleDTIlogEuclidean|ResampleDTIlogEuclidean]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/ResampleDTIlogEuclidean|ResampleDTIlogEuclidean]] extension)</small>
−
* [[Documentation/Nightly/Modules/TractographyLabelMapSeeding|Tractography Label Map Seeding]]    <small>(cli, built-in)</small>
 
−
* [[Documentation/Nightly/Extensions/ResampleDTIlogEuclidean|Resample DTIlog Euclidean]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/ResampleDTIlogEuclidean|Resample DTIlog Euclidean]] extension)</small>
 
−
* [[Documentation/Nightly/Modules/DiffusionTensorScalarMeasurements|Diffusion Tensor Scalar Measurements]]    <small>(cli, built-in)</small>
 
−
* [[Documentation/Nightly/Modules/ResampleDTIVolume|Resample DTIVolume]]    <small>(cli, built-in)</small>
 
 
<span id='Modules_by_category_Diffusion_Diffusion_Weighted_Images'></span>
 
<span id='Modules_by_category_Diffusion_Diffusion_Weighted_Images'></span>
 
=== Diffusion Weighted Images ===
 
=== Diffusion Weighted Images ===
−
* [[Documentation/Nightly/Modules/DWIRicianLMMSEFilter|DWIRician LMMSEFilter]]    <small>(cli, built-in)</small>
 
−
* [[Documentation/Nightly/Modules/DWIJointRicianLMMSEFilter|DWIJoint Rician LMMSEFilter]]    <small>(cli, built-in)</small>
 
−
* [[Documentation/Nightly/Modules/FinslerBacktracing|Finsler Backtracing]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/FinslerTractography|Finsler Tractography]] extension)</small>
 
−
* [[Documentation/Nightly/Modules/FinslerTractography|Finsler Tractography]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/FinslerTractography|Finsler Tractography]] extension)</small>
 
 
* BRAINSDWICleanup    <small>(cli, built-in)</small>
 
* BRAINSDWICleanup    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Modules/DWIToDTIEstimation|DWITo DTIEstimation]]    <small>(cli, built-in)</small>
+
<span id='Modules_by_category_Diffusion_Import_and_Export'></span>
−
* [[Documentation/Nightly/Modules/DiffusionWeightedVolumeMasking|Diffusion Weighted Volume Masking]]    <small>(cli, built-in)</small>
+
=== Import and Export ===
−
* [[Documentation/Nightly/Modules/ResampleScalarVectorDWIVolume|Resample Scalar Vector DWIVolume]]    <small>(cli, built-in)</small>
+
* DWIConvert    <small>(cli, built-in)</small>
−
<span id='Modules_by_category_Diffusion_FiberAnalysis'></span>
+
* [[Documentation/Nightly/Extensions/SlicerDMRI|DICOMTract_to_VTK]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small>
−
=== FiberAnalysis ===
+
* [[Documentation/Nightly/Extensions/SlicerDMRI|VTK_to_DICOMTract]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small>
−
* Fiber Post Process   <small>(cli, built-in)</small>
+
<span id='Modules_by_category_Diffusion_Process'></span>
 +
=== Process ===
 +
* [[Documentation/Nightly/Modules/DiffusionWeightedVolumeMasking|DiffusionWeightedVolumeMasking]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small>
 +
* [[Documentation/Nightly/Modules/DWIToDTIEstimation|DWIToDTIEstimation]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small>
 +
<span id='Modules_by_category_Diffusion_Quantify'></span>
 +
=== Quantify ===
 +
* [[Documentation/Nightly/Modules/DiffusionTensorScalarMeasurements|DiffusionTensorScalarMeasurements]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small>
 +
* [[Documentation/Nightly/Modules/FiberTractMeasurements|FiberTractMeasurements]]   <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small>
 
<span id='Modules_by_category_Diffusion_Tractography'></span>
 
<span id='Modules_by_category_Diffusion_Tractography'></span>
 
=== Tractography ===
 
=== Tractography ===
−
* Fiber Bundle Label Select   <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/TractographyInteractiveSeeding|TractographyInteractiveSeeding]]   <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small>
−
* [[Documentation/Nightly/Modules/FiberBundleToLabelMap|Fiber Bundle To Label Map]]    <small>(scripted, built-in)</small>
+
* [[Documentation/Nightly/Modules/TractographyDisplay|TractographyDisplay]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small>
 
* [[Documentation/Nightly/Modules/UKFTractography|UKFTractography]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/UKFTractography|UKFTractography]] extension)</small>
 
* [[Documentation/Nightly/Modules/UKFTractography|UKFTractography]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/UKFTractography|UKFTractography]] extension)</small>
−
* Fiber Tract Measurements   <small>(cli, built-in)</small>
+
<span id='Modules_by_category_Tractography_Region-based'></span>
 +
==== Region-based ====
 +
* [[Documentation/Nightly/Modules/TractographyLabelMapSeeding|TractographyLabelMapSeeding]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small>
 +
* [[Documentation/Nightly/Modules/FiberBundleLabelSelect|FiberBundleLabelSelect]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small>
 +
<span id='Modules_by_category_Diffusion_Utilities'></span>
 +
=== Utilities ===
 +
* BRAINSDWICleanup    <small>(cli, built-in)</small>
 +
* [[Documentation/Nightly/Modules/ResampleDTIVolume|ResampleDTIVolume]]    <small>(cli, built-in)</small>
 +
* [[Documentation/Nightly/Modules/FiberBundleToLabelMap|FiberBundleToLabelMap]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small>
 +
* [[Documentation/Nightly/Modules/ResampleScalarVectorDWIVolume|ResampleScalarVectorDWIVolume]]   <small>(cli, built-in)</small>
 +
* [[Documentation/Nightly/Extensions/SlicerDMRI|DICOM2FullBrainTractography]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small>
 
<span id='Modules_by_category_Editor_Effects'></span>
 
<span id='Modules_by_category_Editor_Effects'></span>
 
== Editor Effects ==
 
== Editor Effects ==
−
* [[Documentation/Nightly/Extensions/WindowLevelEffect|Window Level Effect]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/WindowLevelEffect|Window Level Effect]] extension)</small>
+
* [[Documentation/Nightly/Extensions/WindowLevelEffect|WindowLevelEffect]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/WindowLevelEffect|WindowLevelEffect]] extension)</small>
 
<span id='Modules_by_category_EditorEffect'></span>
 
<span id='Modules_by_category_EditorEffect'></span>
 
== EditorEffect ==
 
== EditorEffect ==
−
* [[Documentation/Nightly/Extensions/PETTumorSegmentation|PETTumor Segmentation]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/PETTumorSegmentation|PETTumor Segmentation]] extension)</small>
+
* [[Documentation/Nightly/Extensions/PETTumorSegmentation|PETTumorSegmentation]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/PETTumorSegmentation|PETTumorSegmentation]] extension)</small>
 
<span id='Modules_by_category_Endoscopy'></span>
 
<span id='Modules_by_category_Endoscopy'></span>
 
== Endoscopy ==
 
== Endoscopy ==
Line 280: Line 340:
 
<span id='Modules_by_category_Examples'></span>
 
<span id='Modules_by_category_Examples'></span>
 
== Examples ==
 
== Examples ==
−
* [[Documentation/Nightly/Modules/FastGrowCut|Fast Grow Cut]]    <small>(loadable, bundled in [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect] extension)</small>
+
* [[Documentation/Nightly/Modules/FastGrowCut|FastGrowCut]]    <small>(loadable, bundled in [[Documentation/4.3/Modules/FastGrowCut|FastGrowCutEffect]] extension)</small>
−
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Fast Grow Cut Segmenter]    <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
+
* [[Documentation/Nightly/Extensions/SlicerPathology|QuickTCGA]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerPathology|SlicerPathology]] extension)</small>
−
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]    <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
+
* [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|FastGrowCutSegmenter]]    <small>(loadable, bundled in [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|CarreraSlice]] extension)</small>
−
* [http://publish.uwo.ca/~dchen285/GraphCutSegment/GraphCutSegment.html Graph Cut Interactive Segmenter]    <small>(loadable, bundled in [http://publish.uwo.ca/~dchen285/GraphCutSegment/GraphCutSegment.html Graph Cut Segment] extension)</small>
+
* [[Documentation/Nightly/Extensions/SlicerPathology|ShortCutCore]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerPathology|SlicerPathology]] extension)</small>
 +
* [http://publish.uwo.ca/~dchen285/GraphCutSegment/GraphCutSegment.html GraphCutInteractiveSegmenter]    <small>(loadable, bundled in [http://publish.uwo.ca/~dchen285/GraphCutSegment/GraphCutSegment.html GraphCutSegment] extension)</small>
 +
* [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|CarreraSlice]]    <small>(loadable, bundled in [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|CarreraSlice]] extension)</small>
 
<span id='Modules_by_category_Exporter'></span>
 
<span id='Modules_by_category_Exporter'></span>
 
== Exporter ==
 
== Exporter ==
−
* [[Documentation/Nightly/Modules/SlicerToKiwiExporter|Slicer To Kiwi Exporter]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerToKiwiExporter|Slicer To Kiwi Exporter]] extension)</small>
+
* [[Documentation/Nightly/Modules/SlicerToKiwiExporter|SlicerToKiwiExporter]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerToKiwiExporter|SlicerToKiwiExporter]] extension)</small>
 
<span id='Modules_by_category_Filter'></span>
 
<span id='Modules_by_category_Filter'></span>
 
== Filter ==
 
== Filter ==
−
* Island Removal   <small>(cli, built-in)</small>
+
* IslandRemoval   <small>(cli, built-in)</small>
 
<span id='Modules_by_category_Filtering'></span>
 
<span id='Modules_by_category_Filtering'></span>
 
== Filtering ==
 
== Filtering ==
−
* [[Documentation/Nightly/Modules/SegmentationSmoothing|Segmentation Smoothing]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerProstate|Slicer Prostate]] extension)</small>
+
* [[Documentation/Nightly/Modules/SegmentationSmoothing|SegmentationSmoothing]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerProstate|SlicerProstate]] extension)</small>
−
* [[Documentation/Nightly/Modules/N4ITKBiasFieldCorrection|N4ITKBias Field Correction]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/N4ITKBiasFieldCorrection|N4ITKBiasFieldCorrection]]    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Modules/ImageLabelCombine|Image Label Combine]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/ImageLabelCombine|ImageLabelCombine]]    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Modules/VotingBinaryHoleFillingImageFilter|Voting Binary Hole Filling Image Filter]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/VotingBinaryHoleFillingImageFilter|VotingBinaryHoleFillingImageFilter]]    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Modules/CheckerBoardFilter|Checker Board Filter]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/CheckerBoardFilter|CheckerBoardFilter]]    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Modules/ExtractSkeleton|Extract Skeleton]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/AstroSmoothing|AstroSmoothing]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
−
* [[Documentation/Nightly/Modules/SimpleFilters|Simple Filters]]    <small>(scripted, built-in)</small>
+
* [https://slicer.readthedocs.io/en/latest/user_guide/modules/extractskeleton.html ExtractSkeleton]    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Modules/ThresholdScalarVolume|Threshold Scalar Volume]]    <small>(cli, built-in)</small>
+
* [https://slicer.readthedocs.io/en/latest/user_guide/modules/simplefilters.html SimpleFilters]    <small>(scripted, built-in)</small>
−
* [[Documentation/Nightly/Modules/HistogramMatching|Histogram Matching]]    <small>(cli, built-in)</small>
+
* [https://slicer.readthedocs.io/en/latest/user_guide/modules/thresholdscalarvolume.html ThresholdScalarVolume]    <small>(cli, built-in)</small>
 +
* [https://slicer.readthedocs.io/en/latest/user_guide/modules/histogrammatching.html HistogramMatching]    <small>(cli, built-in)</small>
 
<span id='Modules_by_category_Filtering_Arithmetic'></span>
 
<span id='Modules_by_category_Filtering_Arithmetic'></span>
 
=== Arithmetic ===
 
=== Arithmetic ===
−
* [[Documentation/Nightly/Modules/MultiplyScalarVolumes|Multiply Scalar Volumes]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/MultiplyScalarVolumes|MultiplyScalarVolumes]]    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Modules/AddScalarVolumes|Add Scalar Volumes]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/AddScalarVolumes|AddScalarVolumes]]    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Modules/MaskScalarVolume|Mask Scalar Volume]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/MaskScalarVolume|MaskScalarVolume]]    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Modules/SubtractScalarVolumes|Subtract Scalar Volumes]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/SubtractScalarVolumes|SubtractScalarVolumes]]    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Modules/CastScalarVolume|Cast Scalar Volume]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/CastScalarVolume|CastScalarVolume]]    <small>(cli, built-in)</small>
 +
* [[Documentation/Nightly/Extensions/OpenCVExample|BlendVectorVolumes]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/OpenCVExample|OpenCVExample]] extension)</small>
 
<span id='Modules_by_category_Filtering_Denoising'></span>
 
<span id='Modules_by_category_Filtering_Denoising'></span>
 
=== Denoising ===
 
=== Denoising ===
−
* [[Documentation/Nightly/Modules/CurvatureAnisotropicDiffusion|Curvature Anisotropic Diffusion]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/CurvatureAnisotropicDiffusion|CurvatureAnisotropicDiffusion]]    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Modules/GradientAnisotropicDiffusion|Gradient Anisotropic Diffusion]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/GradientAnisotropicDiffusion|GradientAnisotropicDiffusion]]    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Modules/MedianImageFilter|Median Image Filter]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/MedianImageFilter|MedianImageFilter]]    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Modules/GaussianBlurImageFilter|Gaussian Blur Image Filter]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/GaussianBlurImageFilter|GaussianBlurImageFilter]]    <small>(cli, built-in)</small>
 
<span id='Modules_by_category_Filtering_Morphology'></span>
 
<span id='Modules_by_category_Filtering_Morphology'></span>
 
=== Morphology ===
 
=== Morphology ===
−
* [[Documentation/Nightly/Modules/GrayscaleFillHoleImageFilter|Grayscale Fill Hole Image Filter]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/GrayscaleFillHoleImageFilter|GrayscaleFillHoleImageFilter]]    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Modules/GrayscaleGrindPeakImageFilter|Grayscale Grind Peak Image Filter]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/GrayscaleGrindPeakImageFilter|GrayscaleGrindPeakImageFilter]]    <small>(cli, built-in)</small>
 
<span id='Modules_by_category_IGT'></span>
 
<span id='Modules_by_category_IGT'></span>
 +
 
== IGT ==
 
== IGT ==
−
* [https://github.com/SlicerIGT/LumpNav Viewpoint]    <small>(scripted, bundled in [https://github.com/SlicerIGT/LumpNav Lump Nav] extension)</small>
+
* [[Documentation/Nightly/Extensions/SlicerIGT|Viewpoint]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
−
* [[Documentation/Nightly/Modules/CollectFiducials|Collect Fiducials]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
+
* [[Documentation/Nightly/Modules/CollectFiducials|CollectFiducials]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
−
* [https://github.com/SlicerIGT/LumpNav Lump Nav]   <small>(scripted, bundled in [https://github.com/SlicerIGT/LumpNav Lump Nav] extension)</small>
+
* [[Documentation/Nightly/Extensions/SlicerIGT|TransformFusion]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
−
* [[Documentation/Nightly/Extensions/SlicerIGT|Transform Fusion]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
+
* [[Documentation/Nightly/Modules/GyroGuide|GyroGuide]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/GyroGuide|GyroGuide]] extension)</small>
−
* [[Documentation/Nightly/Modules/GyroGuide|Gyro Guide]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/GyroGuide|Gyro Guide]] extension)</small>
+
* [[Documentation/Nightly/Extensions/SlicerIGT|PlusModelCatalogBrowser]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
−
* [[Documentation/Nightly/Extensions/LightWeightRobotIGT|Light Weight Robot IGT]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/LightWeightRobotIGT|Light Weight Robot IGT]] extension)</small>
+
* [[Documentation/Nightly/Extensions/SlicerIGT|CreateModels]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
−
* [[Documentation/Nightly/Extensions/SlicerIGT|Create Models]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
+
* [[Documentation/Nightly/Extensions/NeedleFinder|NeedleFinder]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/NeedleFinder|NeedleFinder]] extension)</small>
−
* [[Documentation/Nightly/Extensions/NeedleFinder|Needle Finder]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/NeedleFinder|Needle Finder]] extension)</small>
+
* [[Documentation/Nightly/Modules/TrackerStabilizer|TrackerStabilizer]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/TrackerStabilizer|TrackerStabilizer]] extension)</small>
−
* [[Documentation/Nightly/Modules/TrackerStabilizer|Tracker Stabilizer]]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/TrackerStabilizer Tracker Stabilizer] extension)</small>
+
* [[Documentation/Nightly/Modules/PathExplorer|PathExplorer]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
−
* [[Documentation/Nightly/Modules/PathExplorer|Path Explorer]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
+
* [[Documentation/Nightly/Extensions/SlicerIGT|UltrasoundSnapshots]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
−
* [[Documentation/Nightly/Extensions/SlicerIGT|Ultrasound Snapshots]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
+
* [[Documentation/Nightly/Extensions/SlicerIGT|BreachWarning]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
−
* [https://github.com/SlicerIGT/LumpNav Breach Warning Light]    <small>(scripted, bundled in [https://github.com/SlicerIGT/LumpNav Lump Nav] extension)</small>
+
* [[Documentation/Nightly/Extensions/SlicerIGT|FiducialRegistrationWizard]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
−
* [[Documentation/Nightly/Extensions/SlicerIGT|Breach Warning]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
+
* [[Documentation/Nightly/Extensions/SlicerIGT|ModelRegistration]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
−
* [[Documentation/Nightly/Extensions/SlicerIGT|Model Registration]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
+
* [[Documentation/Nightly/Modules/ResectionVolume|ResectionVolume]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/ResectionPlanner|ResectionPlanner]] extension)</small>
−
* [[Documentation/Nightly/Extensions/SlicerIGT|Pivot Calibration]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
+
* [[Documentation/Nightly/Extensions/SlicerIGT|PivotCalibration]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
−
* [[Documentation/Nightly/Modules/VolumeResliceDriver|Volume Reslice Driver]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
+
* [[Documentation/Nightly/Modules/VolumeResliceDriver|VolumeResliceDriver]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
−
* [[Documentation/Nightly/Extensions/SlicerIGT|Fiducial Registration Wizard]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
+
* [[Documentation/Nightly/Modules/OpenIGTLinkRemote|OpenIGTLinkRemote]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
−
* [[Documentation/Nightly/Modules/OpenIGTLinkRemote|Open IGTLink Remote]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
+
* [[Documentation/Nightly/Extensions/SlicerIGT|FiducialsToModelRegistration]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
−
* [[Documentation/Nightly/Modules/Watchdog|Watchdog]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
+
* [[Documentation/Nightly/Modules/Watchdog|Watchdog]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
−
* [[Documentation/Nightly/Modules/CornerAnnotation|Corner Annotation]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/CornerAnnotation|Corner Annotation]] extension)</small>
+
* [[Documentation/Nightly/Modules/CornerAnnotation|CornerAnnotation]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/CornerAnnotation|CornerAnnotation]] extension)</small>
−
* [[Documentation/Nightly/Modules/OpenIGTLinkIF|Open IGTLink IF]]    <small>(loadable, built-in)</small>
+
* [[Documentation/Nightly/Modules/OpenIGTLinkIF|OpenIGTLinkIF]]    <small>(loadable, built-in)</small>
−
* [[Documentation/Nightly/Extensions/iGyne|i Gyne]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/iGyne|i Gyne]] extension)</small>
+
* [[Documentation/Nightly/Extensions/SlicerIGT|MarkupsToModel]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
−
* [[Documentation/Nightly/Modules/PlusRemote|Plus Remote]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
+
* [[Documentation/Nightly/Extensions/iGyne|iGyne]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/iGyne|iGyne]] extension)</small>
−
* [[Documentation/Nightly/Extensions/SlicerIGT|Fiducials To Model Registration]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
+
* [[Documentation/Nightly/Modules/PlusRemote|PlusRemote]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
−
* [[Documentation/Nightly/Extensions/SlicerIGT|Markups To Model]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 
 
<span id='Modules_by_category_Informatics'></span>
 
<span id='Modules_by_category_Informatics'></span>
 
== Informatics ==
 
== Informatics ==
−
* [[Documentation/Nightly/Extensions/mpReview|mp Review Preprocessor]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/mpReview|mp Review]] extension)</small>
+
* [[Documentation/Nightly/Extensions/DCMQI|tid1500writer]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/DCMQI|DCMQI]] extension)</small>
−
* [[Documentation/Nightly/Extensions/mpReview|mp Review]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/mpReview|mp Review]] extension)</small>
+
* [[Documentation/Nightly/Extensions/mpReview|mpReviewPreprocessor]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/mpReview|mpReview]] extension)</small>
 +
* [[Documentation/Nightly/Modules/SEG2NRRD|SEG2NRRD]]    <small>(cli)</small>
 +
* [[Documentation/Nightly/Extensions/TCIABrowser|TCIABrowser]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/TCIABrowser|TCIABrowser]] extension)</small>
 +
* [[Documentation/Nightly/Extensions/DCMQI|segimage2itkimage]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/DCMQI|DCMQI]] extension)</small>
 +
* [[Documentation/Nightly/Extensions/mpReview|mpReview]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/mpReview|mpReview]] extension)</small>
 
* [[Documentation/Nightly/Modules/Tables|Tables]]    <small>(loadable, built-in)</small>
 
* [[Documentation/Nightly/Modules/Tables|Tables]]    <small>(loadable, built-in)</small>
−
* [[Documentation/Nightly/Extensions/Reporting|SEG2NRRD]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/Reporting|Reporting]] extension)</small>
 
−
* [[Documentation/Nightly/Extensions/TCIABrowser|TCIABrowser]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/TCIABrowser|TCIABrowser]] extension)</small>
 
 
* [[Documentation/Nightly/Modules/Data|Data]]    <small>(loadable, built-in)</small>
 
* [[Documentation/Nightly/Modules/Data|Data]]    <small>(loadable, built-in)</small>
 +
* DumpSEGFrame    <small>(cli)</small>
 +
* [[Documentation/Nightly/Extensions/DCMQI|tid1500reader]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/DCMQI|DCMQI]] extension)</small>
 +
* Terminologies    <small>(loadable, built-in)</small>
 
* [[Documentation/Nightly/Modules/Units|Units]]    <small>(loadable, built-in)</small>
 
* [[Documentation/Nightly/Modules/Units|Units]]    <small>(loadable, built-in)</small>
 
* [[Documentation/Nightly/Modules/DICOM|DICOM]]    <small>(scripted, built-in)</small>
 
* [[Documentation/Nightly/Modules/DICOM|DICOM]]    <small>(scripted, built-in)</small>
−
* [[Documentation/Nightly/Modules/SampleData|Sample Data]]    <small>(scripted, built-in)</small>
+
* [[Documentation/Nightly/Modules/SampleData|SampleData]]    <small>(scripted, built-in)</small>
 
* [[Documentation/Nightly/Modules/Colors|Colors]]    <small>(loadable, built-in)</small>
 
* [[Documentation/Nightly/Modules/Colors|Colors]]    <small>(loadable, built-in)</small>
−
* [[Documentation/Nightly/Extensions/CurveMaker|Curve Maker]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/CurveMaker|Curve Maker]] extension)</small>
+
* [[Documentation/Nightly/Extensions/CurveMaker|CurveMaker]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/CurveMaker|CurveMaker]] extension)</small>
 
* [[Documentation/Nightly/Modules/Annotations|Annotations]]    <small>(loadable, built-in)</small>
 
* [[Documentation/Nightly/Modules/Annotations|Annotations]]    <small>(loadable, built-in)</small>
 
* [[Documentation/Nightly/Modules/Markups|Markups]]    <small>(loadable, built-in)</small>
 
* [[Documentation/Nightly/Modules/Markups|Markups]]    <small>(loadable, built-in)</small>
−
* [[Documentation/Nightly/Modules/SubjectHierarchy|Subject Hierarchy]]    <small>(loadable, built-in)</small>
+
* [[Documentation/Nightly/Modules/SubjectHierarchy|SubjectHierarchy]]    <small>(loadable, built-in)</small>
−
* [[Documentation/Nightly/Extensions/Reporting|Encode SEG]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/Reporting|Reporting]] extension)</small>
+
* [[Documentation/Nightly/Extensions/QuantitativeReporting|QuantitativeReporting]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/QuantitativeReporting|QuantitativeReporting]] extension)</small>
 +
<span id='Modules_by_category_Informatics_Converters'></span>
 +
=== Converters ===
 +
* [[Documentation/Nightly/Extensions/DCMQI|itkimage2paramap]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/DCMQI|DCMQI]] extension)</small>
 +
* [[Documentation/Nightly/Extensions/DCMQI|paramap2itkimage]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/DCMQI|DCMQI]] extension)</small>
 +
* [[Documentation/Nightly/Extensions/DCMQI|itkimage2segimage]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/DCMQI|DCMQI]] extension)</small>
 +
* [[Documentation/Nightly/Modules/EncodeSEG|EncodeSEG]]    <small>(cli)</small>
 
<span id='Modules_by_category_Legacy'></span>
 
<span id='Modules_by_category_Legacy'></span>
 
== Legacy ==
 
== Legacy ==
 
<span id='Modules_by_category_Legacy_Converters'></span>
 
<span id='Modules_by_category_Legacy_Converters'></span>
 
=== Converters ===
 
=== Converters ===
−
* [[Documentation/Nightly/Modules/BSplineToDeformationField|BSpline To Deformation Field]]   <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/BSplineToDeformationField|BSplineToDeformationField]]    <small>(cli, built-in)</small>
−
<span id='Modules_by_category_Legacy_Diffusion'></span>
 
−
=== Diffusion ===
 
−
<span id='Modules_by_category_Diffusion_Denoising'></span>
 
−
==== Denoising ====
 
−
* [[Documentation/Nightly/Modules/DWIUnbiasedNonLocalMeansFilter|DWIUnbiased Non Local Means Filter]]    <small>(cli, built-in)</small>
 
−
<span id='Modules_by_category_Diffusion_Diffusion_Data_Conversion'></span>
 
−
==== Diffusion Data Conversion ====
 
−
* DTIexport    <small>(cli, built-in)</small>
 
−
* DTIimport   <small>(cli, built-in)</small>
 
 
<span id='Modules_by_category_Legacy_Filtering'></span>
 
<span id='Modules_by_category_Legacy_Filtering'></span>
 
=== Filtering ===
 
=== Filtering ===
−
* [[Documentation/Nightly/Modules/OtsuThresholdImageFilter|Otsu Threshold Image Filter]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/OtsuThresholdImageFilter|OtsuThresholdImageFilter]]    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Modules/ResampleScalarVolume|Resample Scalar Volume]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/ResampleScalarVolume|ResampleScalarVolume]]    <small>(cli, built-in)</small>
 
<span id='Modules_by_category_Legacy_Registration'></span>
 
<span id='Modules_by_category_Legacy_Registration'></span>
 
=== Registration ===
 
=== Registration ===
−
* Test Grid Transform Registration   <small>(cli, built-in)</small>
+
* TestGridTransformRegistration   <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Modules/ExpertAutomatedRegistration|Expert Automated Registration]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/ExpertAutomatedRegistration|ExpertAutomatedRegistration]]    <small>(cli, built-in)</small>
 
<span id='Modules_by_category_Legacy_Work_in_Progress'></span>
 
<span id='Modules_by_category_Legacy_Work_in_Progress'></span>
 
=== Work in Progress ===
 
=== Work in Progress ===
Line 390: Line 456:
 
<span id='Modules_by_category_Diffusion_Tensor_Test'></span>
 
<span id='Modules_by_category_Diffusion_Tensor_Test'></span>
 
===== Test =====
 
===== Test =====
−
* Diffusion Tensor Test   <small>(cli, built-in)</small>
+
* DiffusionTensorTest   <small>(cli, built-in)</small>
 +
<span id='Modules_by_category_Libraries'></span>
 +
== Libraries ==
 +
* [[Documentation/Nightly/Extensions/SlicerOpenCV|OpenCV]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerOpenCV|SlicerOpenCV]] extension)</small>
 +
<span id='Modules_by_category_Machine_Learning'></span>
 +
== Machine Learning ==
 +
* [[Documentation/Nightly/Modules/DeepInfer|DeepInfer]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/DeepInfer|DeepInfer]] extension)</small>
 
<span id='Modules_by_category_Margin_Calculator'></span>
 
<span id='Modules_by_category_Margin_Calculator'></span>
 
== Margin Calculator ==
 
== Margin Calculator ==
−
* [[Documentation/Nightly/Extensions/MarginCalculator|Motion Simulator Double Array]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/MarginCalculator|Margin Calculator]] extension)</small>
+
* [[Documentation/Nightly/Extensions/MarginCalculator|MarginCalculator]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/MarginCalculator|MarginCalculator]] extension)</small>
−
* [[Documentation/Nightly/Extensions/MarginCalculator|Margin Calculator]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/MarginCalculator|Margin Calculator]] extension)</small>
+
* [[Documentation/Nightly/Extensions/MarginCalculator|DoseMorphology]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/MarginCalculator|MarginCalculator]] extension)</small>
−
* [[Documentation/Nightly/Extensions/MarginCalculator|Dose Morphology]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/MarginCalculator|Margin Calculator]] extension)</small>
+
* [[Documentation/Nightly/Extensions/MarginCalculator|SyntheticRTDose]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/MarginCalculator|MarginCalculator]] extension)</small>
−
* [[Documentation/Nightly/Extensions/MarginCalculator|Dose Population Histogram]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/MarginCalculator|Margin Calculator]] extension)</small>
 
−
* [[Documentation/Nightly/Extensions/MarginCalculator|Motion Simulator]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/MarginCalculator|Margin Calculator]] extension)</small>
 
−
* [[Documentation/Nightly/Extensions/MarginCalculator|Synthetic RTDose]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/MarginCalculator|Margin Calculator]] extension)</small>
 
 
<span id='Modules_by_category_Mesh_Generation'></span>
 
<span id='Modules_by_category_Mesh_Generation'></span>
 
== Mesh Generation ==
 
== Mesh Generation ==
−
* [[Documentation/Nightly/Extensions/CleaverExtension|Cleaver CLI]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CleaverExtension|Cleaver Extension]] extension)</small>
+
* [[Documentation/Nightly/Extensions/CleaverExtension|CleaverCLI]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CleaverExtension|CleaverExtension]] extension)</small>
 
<span id='Modules_by_category_MeshGeneration'></span>
 
<span id='Modules_by_category_MeshGeneration'></span>
 
== MeshGeneration ==
 
== MeshGeneration ==
−
* [[Documentation/Nightly/Modules/BodyCentricCubicMesh|Body Centric Cubic Mesh]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]] extension)</small>
+
* [[Documentation/Nightly/Modules/BodyCentricCubicMesh|BodyCentricCubicMesh]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CBC_3D_I2MConversion|CBC_3D_I2MConversion]] extension)</small>
−
* [[Documentation/Nightly/Modules/MeshCompression|Mesh Compression]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]] extension)</small>
 
 
<span id='Modules_by_category_Microscopy'></span>
 
<span id='Modules_by_category_Microscopy'></span>
 
== Microscopy ==
 
== Microscopy ==
−
* [[Documentation/Nightly/Extensions/IASEM|IASEMImport Series]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small>
+
* [[Documentation/Nightly/Extensions/IASEM|IASEMImportSeries]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small>
 
* [[Documentation/Nightly/Extensions/IASEM|IASEMImport]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small>
 
* [[Documentation/Nightly/Extensions/IASEM|IASEMImport]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small>
−
* [[Documentation/Nightly/Extensions/IASEM|Bin Shrink]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small>
+
* [[Documentation/Nightly/Extensions/IASEM|BinShrink]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small>
−
* [[Documentation/Nightly/Extensions/IASEM|Label Object Statistics]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small>
+
* [[Documentation/Nightly/Extensions/IASEM|LabelObjectStatistics]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small>
−
* [[Documentation/Nightly/Extensions/IASEM|Spacing Aware Curvature Diffusion]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small>
+
* [[Documentation/Nightly/Extensions/IASEM|SpacingAwareCurvatureDiffusion]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small>
 
<span id='Modules_by_category_MultiVolume_Support'></span>
 
<span id='Modules_by_category_MultiVolume_Support'></span>
 
== MultiVolume Support ==
 
== MultiVolume Support ==
−
* [[Documentation/Nightly/Modules/MultiVolumeImporter|Multi Volume Importer]]    <small>(scripted, built-in)</small>
+
* [[Documentation/Nightly/Modules/MultiVolumeImporter|MultiVolumeImporter]]    <small>(scripted, built-in)</small>
−
* [[Documentation/Nightly/Modules/MultiVolumeExplorer|Multi Volume Explorer]]    <small>(loadable, built-in)</small>
+
* [[Documentation/Nightly/Modules/MultiVolumeExplorer|MultiVolumeExplorer]]    <small>(loadable, built-in)</small>
 +
<span id='Modules_by_category_Pathology'></span>
 +
== Pathology ==
 +
* [[Documentation/Nightly/Extensions/SlicerPathology|SlicerPathology]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerPathology|SlicerPathology]] extension)</small>
 
<span id='Modules_by_category_Perk_Tutor'></span>
 
<span id='Modules_by_category_Perk_Tutor'></span>
 
== Perk Tutor ==
 
== Perk Tutor ==
−
* [[Documentation/Nightly/Extensions/PerkTutor|Python Metrics Calculator]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PerkTutor|Perk Tutor]] extension)</small>
+
* [[Documentation/Nightly/Extensions/PerkTutor|PythonMetricsCalculator]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PerkTutor|PerkTutor]] extension)</small>
−
* [[Documentation/Nightly/Modules/TransformRecorder|Transform Recorder]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/PerkTutor|Perk Tutor]] extension)</small>
+
* [[Documentation/Nightly/Modules/TransformRecorder|TransformRecorder]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/PerkTutor|PerkTutor]] extension)</small>
−
* [[Documentation/Nightly/Modules/PerkEvaluator|Perk Evaluator]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/PerkTutor|Perk Tutor]] extension)</small>
+
* [[Documentation/Nightly/Modules/PerkEvaluator|PerkEvaluator]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/PerkTutor|PerkTutor]] extension)</small>
−
* [[Documentation/Nightly/Modules/WorkflowSegmentation|Workflow Segmentation]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/PerkTutor|Perk Tutor]] extension)</small>
+
* [[Documentation/Nightly/Modules/WorkflowSegmentation|WorkflowSegmentation]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/PerkTutor|PerkTutor]] extension)</small>
 
<span id='Modules_by_category_Plastimatch'></span>
 
<span id='Modules_by_category_Plastimatch'></span>
 
== Plastimatch ==
 
== Plastimatch ==
−
* [[Documentation/Nightly/Modules/DicomSroExport|Dicom Sro Export]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
+
* [[Documentation/Nightly/Modules/DicomSroExport|DicomSroExport]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small>
−
* [[Documentation/Nightly/Extensions/SlicerRT|Plm Register]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
+
* [[Documentation/Nightly/Extensions/SlicerRT|PlmRegister]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small>
 
<span id='Modules_by_category_Plastimatch_Registration'></span>
 
<span id='Modules_by_category_Plastimatch_Registration'></span>
 
=== Registration ===
 
=== Registration ===
−
* [[Documentation/Nightly/Extensions/SlicerRT|plastimatch slicer bspline]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
+
* [[Documentation/Nightly/Extensions/SlicerRT|plastimatch_slicer_bspline]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small>
−
* [[Documentation/Nightly/Extensions/SlicerRT|plastimatch slicer landwarp]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
+
* [[Documentation/Nightly/Extensions/SlicerRT|plastimatch_slicer_landwarp]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small>
 
<span id='Modules_by_category_Plastimatch_Utilities'></span>
 
<span id='Modules_by_category_Plastimatch_Utilities'></span>
 
=== Utilities ===
 
=== Utilities ===
−
* [[Documentation/Nightly/Extensions/SlicerRT|Plastimatch Py]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
+
* [[Documentation/Nightly/Extensions/SlicerRT|PlastimatchPy]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small>
 
<span id='Modules_by_category_Quantification'></span>
 
<span id='Modules_by_category_Quantification'></span>
 
== Quantification ==
 
== Quantification ==
−
* [[Documentation/Nightly/Extensions/PET-IndiC|PETIndi C]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PET-IndiC|PET-Indi C]] extension)</small>
+
* [http://slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/DSC_MRI_Analysis DSCMRIAnalysis]    <small>(cli, bundled in [http://slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/DSC_MRI_Analysis DSCMRIAnalysis] extension)</small>
−
* [[Documentation/Nightly/Modules/HeterogeneityCAD|Heterogeneity CAD]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/OpenCAD|Open CAD]] extension)</small>
+
* [[Documentation/Nightly/Modules/PETLiverUptakeMeasurement|PETLiverUptakeMeasurement]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/PETLiverUptakeMeasurement|PETLiverUptakeMeasurement]] extension)</small>
−
* [[Documentation/Nightly/Modules/QuantitativeIndicesCLI|Quantitative Indices CLI]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/PET-IndiC|PET-Indi C]] extension)</small>
+
* [[Documentation/Nightly/Extensions/PET-IndiC|PETIndiC]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PET-IndiC|PET-IndiC]] extension)</small>
−
* [[Documentation/Nightly/Modules/PETStandardUptakeValueComputation|PETStandard Uptake Value Computation]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/Q3DC|Q3DC]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/Q3DC|Q3DC]] extension)</small>
−
* [[Documentation/Nightly/Modules/SUVFactorCalculator|SUVFactor Calculator]]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] extension)</small>
+
* [[Documentation/Nightly/Modules/HeterogeneityCAD|HeterogeneityCAD]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/OpenCAD|OpenCAD]] extension)</small>
−
* [[Documentation/Nightly/Modules/SpinalCurvatureMeasurement|Spinal Curvature Measurement]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/Scoliosis|Scoliosis]] extension)</small>
+
* [[Documentation/Nightly/Modules/ShapeQuantifier|ShapeQuantifier]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/ShapeQuantifier|ShapeQuantifier]] extension)</small>
−
* [[Documentation/Nightly/Modules/QuantitativeIndicesTool|Quantitative Indices Tool]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PET-IndiC|PET-Indi C]] extension)</small>
+
* [[Documentation/Nightly/Modules/QuantitativeIndicesCLI|QuantitativeIndicesCLI]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/PET-IndiC|PET-IndiC]] extension)</small>
−
* [[Documentation/Nightly/Modules/LabelStatistics|Label Statistics]]    <small>(scripted, built-in)</small>
+
* [[Documentation/Nightly/Modules/PETStandardUptakeValueComputation|PETStandardUptakeValueComputation]]    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Modules/DWModeling|DWModeling]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerProstate|Slicer Prostate]] extension)</small>
+
* [[Documentation/Nightly/Modules/SUVFactorCalculator|SUVFactorCalculator]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/PETDICOM|PETDICOMExtension]] extension)</small>
−
* BRAINSLabel Stats   <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/SpinalCurvatureMeasurement|SpinalCurvatureMeasurement]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/Scoliosis|Scoliosis]] extension)</small>
−
* [[Documentation/Nightly/Modules/PkModeling|Pk Modeling]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/PkModeling|Pk Modeling]] extension)</small>
+
* [[Documentation/Nightly/Modules/QuantitativeIndicesTool|QuantitativeIndicesTool]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PET-IndiC|PET-IndiC]] extension)</small>
−
* [[Documentation/Nightly/Extensions/LongitudinalPETCT|PETSUVImage Maker]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/LongitudinalPETCT|Longitudinal PETCT]] extension)</small>
+
* SegmentStatistics    <small>(scripted, built-in)</small>
−
* [[Documentation/Nightly/Modules/DataProbe|Data Probe]]    <small>(scripted, built-in)</small>
+
* [[Documentation/Nightly/Modules/LabelStatistics|LabelStatistics]]    <small>(scripted, built-in)</small>
 +
* [[Documentation/Nightly/Modules/MeshStatistics|MeshStatistics]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/MeshStatistics|MeshStatisticsExtension]] extension)</small>
 +
* [[Documentation/Nightly/Modules/DWModeling|DWModeling]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerProstate|SlicerProstate]] extension)</small>
 +
* BRAINSLabelStats   <small>(cli, built-in)</small>
 +
* [[Documentation/Nightly/Modules/PkModeling|PkModeling]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/PkModeling|PkModeling]] extension)</small>
 +
* [[Documentation/Nightly/Extensions/LongitudinalPETCT|PETSUVImageMaker]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/LongitudinalPETCT|LongitudinalPETCT]] extension)</small>
 +
* [[Documentation/Nightly/Modules/DataProbe|DataProbe]]    <small>(scripted, built-in)</small>
 +
* [[Documentation/Nightly/Extensions/ModelToModelDistance|ModelToModelDistance]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/ModelToModelDistance|ModelToModelDistance]] extension)</small>
 
* [[Documentation/Nightly/Modules/T1Mapping|T1Mapping]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/T1Mapping|T1Mapping]] extension)</small>
 
* [[Documentation/Nightly/Modules/T1Mapping|T1Mapping]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/T1Mapping|T1Mapping]] extension)</small>
−
* [[Documentation/Nightly/Modules/dPetBrainQuantification|d Pet Brain Quantification]]    <small>(scripted, bundled in [http://gti-fing.github.io/SlicerPetSpectAnalysis Pet Spect Analysis] extension)</small>
+
* [[Documentation/Nightly/Modules/SlicerAstroDataProbe|SlicerAstroDataProbe]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
−
* [[Documentation/Nightly/Modules/DiceComputation|Dice Computation]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/DiceComputation|Dice Computation]] extension)</small>
+
* [[Documentation/Nightly/Modules/AnglePlanes|AnglePlanes]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/ShapeQuantifier|ShapeQuantifier]] extension)</small>
 +
* [[Documentation/Nightly/Modules/dPetBrainQuantification|dPetBrainQuantification]]    <small>(scripted, bundled in [http://gti-fing.github.io/SlicerPetSpectAnalysis PetSpectAnalysis] extension)</small>
 +
* [[Documentation/Nightly/Modules/PickAndPaint|PickAndPaint]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PickAndPaint|PickAndPaintExtension]] extension)</small>
 +
* [[Documentation/Nightly/Extensions/QuantitativeReporting|QuantitativeReporting]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/QuantitativeReporting|QuantitativeReporting]] extension)</small>
 +
* [[Documentation/Nightly/Modules/DiceComputation|DiceComputation]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/DiceComputation|DiceComputation]] extension)</small>
 
<span id='Modules_by_category_Quantification_ChangeQuantification'></span>
 
<span id='Modules_by_category_Quantification_ChangeQuantification'></span>
 
=== ChangeQuantification ===
 
=== ChangeQuantification ===
−
* [[Documentation/Nightly/Modules/IntensityDifferenceMetric|Intensity Difference Metric]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/ChangeTracker|Change Tracker]] extension)</small>
+
* [[Documentation/Nightly/Modules/IntensityDifferenceMetric|IntensityDifferenceMetric]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/ChangeTracker|ChangeTracker]] extension)</small>
 +
<span id='Modules_by_category_Radiology'></span>
 +
 
 +
== Radiology ==
 +
* [[Documentation/Nightly/Extensions/SliceTracker|SliceTracker]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SliceTracker|SliceTracker]] extension)</small>
 +
* [[Documentation/Nightly/Extensions/SliceTracker|SliceTrackerRegistration]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SliceTracker|SliceTracker]] extension)</small>
 +
* [[Documentation/Nightly/Extensions/SliceTracker|SliceTrackerZFrameRegistration]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SliceTracker|SliceTracker]] extension)</small>
 
<span id='Modules_by_category_Radiotherapy'></span>
 
<span id='Modules_by_category_Radiotherapy'></span>
 
== Radiotherapy ==
 
== Radiotherapy ==
−
* [[Documentation/Nightly/Extensions/SlicerRT|Beams]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
+
* [[Documentation/Nightly/Extensions/SlicerRT|Beams]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small>
−
* [[Documentation/Nightly/Extensions/SlicerRT|Dvh Comparison]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
+
* [[Documentation/Nightly/Extensions/SlicerRT|DvhComparison]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small>
−
* [[Documentation/Nightly/Modules/Isodose|Isodose]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
+
* [[Documentation/Nightly/Modules/DoseVolumeHistogram|DoseVolumeHistogram]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small>
−
* [[Documentation/Nightly/Modules/DoseVolumeHistogram|Dose Volume Histogram]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
+
* [[Documentation/Nightly/Extensions/SlicerRT|DicomRtImportExport]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small>
−
* [[Documentation/Nightly/Extensions/SlicerRT|Dicom Rt Import Export]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
+
* [[Documentation/Nightly/Modules/DoseAccumulation|DoseAccumulation]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small>
−
* [[Documentation/Nightly/Modules/DoseAccumulation|Dose Accumulation]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
+
* [[Documentation/Nightly/Extensions/SlicerRT|ExternalBeamPlanning]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small>
−
* [[Documentation/Nightly/Modules/SegmentComparison|Segment Comparison]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
+
* [[Documentation/Nightly/Modules/SegmentComparison|SegmentComparison]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small>
−
* [[Documentation/Nightly/Extensions/SlicerRT|Planar Image]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
+
* [[Documentation/Nightly/Extensions/SlicerRT|PlanarImage]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small>
−
* [[Documentation/Nightly/Modules/SegmentMorphology|Segment Morphology]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
+
* [[Documentation/Nightly/Modules/Isodose|Isodose]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small>
−
* [[Documentation/Nightly/Modules/DoseComparison|Dose Comparison]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
+
* [[Documentation/Nightly/Modules/DoseComparison|DoseComparison]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small>
−
* [[Documentation/Nightly/Modules/DicomSroImport|Dicom Sro Import]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
+
* [[Documentation/Nightly/Modules/SegmentMorphology|SegmentMorphology]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small>
 +
* [[Documentation/Nightly/Modules/DicomSroImport|DicomSroImport]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small>
 
<span id='Modules_by_category_Registration'></span>
 
<span id='Modules_by_category_Registration'></span>
 
== Registration ==
 
== Registration ==
 
* [[Documentation/Nightly/Modules/Transforms|Transforms]]    <small>(loadable, built-in)</small>
 
* [[Documentation/Nightly/Modules/Transforms|Transforms]]    <small>(loadable, built-in)</small>
 
* BRAINSResize    <small>(cli, built-in)</small>
 
* BRAINSResize    <small>(cli, built-in)</small>
−
* Perform Metric Test   <small>(cli, built-in)</small>
+
* PerformMetricTest   <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Modules/LandmarkRegistration|Landmark Registration]]    <small>(scripted, built-in)</small>
+
* [[Documentation/Nightly/Modules/LandmarkRegistration|LandmarkRegistration]]    <small>(scripted, built-in)</small>
 
* [[Documentation/Nightly/Extensions/PBNRR|PBNRR]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/PBNRR|PBNRR]] extension)</small>
 
* [[Documentation/Nightly/Extensions/PBNRR|PBNRR]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/PBNRR|PBNRR]] extension)</small>
 
* [[Documentation/Nightly/Modules/BRAINSResample|BRAINSResample]]    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/BRAINSResample|BRAINSResample]]    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/BRAINSFit|BRAINSFit]]    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/BRAINSFit|BRAINSFit]]    <small>(cli, built-in)</small>
 +
<span id='Modules_by_category_Registration_CMF_Registration'></span>
 +
=== CMF Registration ===
 +
* [[Documentation/Nightly/Extensions/CMFreg|ApplyMatrix]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
 +
* [[Documentation/Nightly/Modules/LabelExtraction|LabelExtraction]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
 +
* [[Documentation/Nightly/Modules/LabelAddition|LabelAddition]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
 +
* [[Documentation/Nightly/Modules/Downsize|Downsize]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
 +
* [[Documentation/Nightly/Modules/SurfaceRegistration|SurfaceRegistration]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
 +
<span id='Modules_by_category_CMF_Registration_Voxelbase_Registration'></span>
 +
==== Voxelbase Registration ====
 +
* [[Documentation/Nightly/Modules/NonGrowing|NonGrowing]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
 +
* [[Documentation/Nightly/Modules/Growing|Growing]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
 +
* [[Documentation/Nightly/Modules/MaskCreation|MaskCreation]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
 
<span id='Modules_by_category_Registration_Label_Registration'></span>
 
<span id='Modules_by_category_Registration_Label_Registration'></span>
 
=== Label Registration ===
 
=== Label Registration ===
−
* [[Documentation/Nightly/Modules/DistanceMapBasedRegistration|Distance Map Based Registration]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerProstate|Slicer Prostate]] extension)</small>
+
* [[Documentation/Nightly/Modules/DistanceMapBasedRegistration|DistanceMapBasedRegistration]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerProstate|SlicerProstate]] extension)</small>
 
<span id='Modules_by_category_Registration_Specialized'></span>
 
<span id='Modules_by_category_Registration_Specialized'></span>
 
=== Specialized ===
 
=== Specialized ===
 
* [[Documentation/Nightly/Modules/ACPCTransform|ACPCTransform]]    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/ACPCTransform|ACPCTransform]]    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Modules/FiducialRegistration|Fiducial Registration]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/FiducialRegistration|FiducialRegistration]]    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Modules/BRAINSDemonWarp|BRAINSDemon Warp]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/BRAINSDemonWarp|BRAINSDemonWarp]]    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/Reformat|Reformat]]    <small>(loadable, built-in)</small>
 
* [[Documentation/Nightly/Modules/Reformat|Reformat]]    <small>(loadable, built-in)</small>
−
* VBRAINSDemon Warp   <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Extensions/ScatteredTransform|ScatteredTransform]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/ScatteredTransform|ScatteredTransform]] extension)</small>
 +
* VBRAINSDemonWarp   <small>(cli, built-in)</small>
 
<span id='Modules_by_category_Segmentation'></span>
 
<span id='Modules_by_category_Segmentation'></span>
 
== Segmentation ==
 
== Segmentation ==
−
* EMSegment Quick   <small>(loadable, built-in)</small>
+
* [[Documentation/Nightly/Modules/ROBEXBrainExtraction|ROBEXBrainExtraction]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/ROBEXBrainExtraction|ROBEXBrainExtraction]] extension)</small>
−
* [[Documentation/Nightly/Extensions/VolumeClip|Volume Clip With Model]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/VolumeClip|Volume Clip]] extension)</small>
+
* EMSegmentQuick   <small>(loadable, built-in)</small>
 +
* [[Documentation/Nightly/Extensions/VolumeClip|VolumeClipWithModel]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/VolumeClip|VolumeClip]] extension)</small>
 
* [http://www.nitrc.org/projects/abc ABC]    <small>(cli, bundled in [http://www.nitrc.org/projects/abc ABC] extension)</small>
 
* [http://www.nitrc.org/projects/abc ABC]    <small>(cli, bundled in [http://www.nitrc.org/projects/abc ABC] extension)</small>
−
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation CLI]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation] extension)</small>
+
* [[Documentation/Nightly/Extensions/SliceTracker|VolumeClipToLabel]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SliceTracker|SliceTracker]] extension)</small>
−
* [[Documentation/Nightly/Modules/LAScarSegmenter|LAScar Segmenter]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/LAScarSegmenter|LAScar Segmenter]] extension)</small>
+
* [[Documentation/Nightly/Extensions/AirwaySegmentation|AirwaySegmentationCLI]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/AirwaySegmentation|AirwaySegmentation]] extension)</small>
−
* [[Documentation/Nightly/Modules/AirwaySegmentation|Airway Segmentation]]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation] extension)</small>
+
* [[Documentation/Nightly/Modules/LAScarSegmenter|LAScarSegmenter]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/LAScarSegmenter|LAScarSegmenter]] extension)</small>
−
* [[Documentation/Nightly/Modules/SkullStripper|Skull Stripper]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SkullStripper|Skull Stripper]] extension)</small>
+
* [[Documentation/Nightly/Modules/SegmentEditor|SegmentEditor]]    <small>(scripted, built-in)</small>
−
* [[Documentation/Nightly/Extensions/VolumeClip|Volume Clip With Roi]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/VolumeClip|Volume Clip]] extension)</small>
+
* [[Documentation/Nightly/Modules/AirwaySegmentation|AirwaySegmentation]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/AirwaySegmentation|AirwaySegmentation]] extension)</small>
−
* [[Documentation/Nightly/Modules/SegmentCAD|Segment CAD]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/OpenCAD|Open CAD]] extension)</small>
+
* [[Documentation/Nightly/Modules/SkullStripper|SkullStripper]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SkullStripper|SkullStripper]] extension)</small>
−
* [[Documentation/Nightly/Modules/SwissSkullStripper|Swiss Skull Stripper]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SwissSkullStripper|Swiss Skull Stripper]] extension)</small>
+
* [https://github.com/lassoan/SlicerSegmentEditorExtraEffects SegmentEditorFastMarching]    <small>(scripted, bundled in [https://github.com/lassoan/SlicerSegmentEditorExtraEffects SegmentEditorExtraEffects] extension)</small>
 +
* [[Documentation/Nightly/Modules/SobolevSegmenter|SobolevSegmenter]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SobolevSegmenter|SobolevSegmenter]] extension)</small>
 +
* [[Documentation/Nightly/Extensions/VolumeClip|VolumeClipWithRoi]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/VolumeClip|VolumeClip]] extension)</small>
 +
* [[Documentation/Nightly/Modules/SegmentCAD|SegmentCAD]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/OpenCAD|OpenCAD]] extension)</small>
 +
* [[Documentation/Nightly/Modules/SwissSkullStripper|SwissSkullStripper]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SwissSkullStripper|SwissSkullStripper]] extension)</small>
 +
* [https://github.com/lassoan/SlicerSegmentEditorExtraEffects SegmentEditorFloodFilling]    <small>(scripted, bundled in [https://github.com/lassoan/SlicerSegmentEditorExtraEffects SegmentEditorExtraEffects] extension)</small>
 
* [https://github.com/Tomnl/Slicer-Wasp Wasp]    <small>(scripted, bundled in [https://github.com/Tomnl/Slicer-Wasp Wasp] extension)</small>
 
* [https://github.com/Tomnl/Slicer-Wasp Wasp]    <small>(scripted, bundled in [https://github.com/Tomnl/Slicer-Wasp Wasp] extension)</small>
 
* [[Documentation/Nightly/Modules/Editor|Editor]]    <small>(scripted, built-in)</small>
 
* [[Documentation/Nightly/Modules/Editor|Editor]]    <small>(scripted, built-in)</small>
−
* [[Documentation/Nightly/Modules/SimpleRegionGrowingSegmentation|Simple Region Growing Segmentation]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/SimpleRegionGrowingSegmentation|SimpleRegionGrowingSegmentation]]    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/EMSegment|EMSegment]]    <small>(loadable, built-in)</small>
 
* [[Documentation/Nightly/Modules/EMSegment|EMSegment]]    <small>(loadable, built-in)</small>
−
* [[Documentation/Nightly/Extensions/IntensitySegmenter|Intensity Segmenter]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/IntensitySegmenter|Intensity Segmenter]] extension)</small>
+
* [[Documentation/Nightly/Extensions/QuantitativeReporting|QuantitativeReporting]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/QuantitativeReporting|QuantitativeReporting]] extension)</small>
 +
* [[Documentation/Nightly/Extensions/IntensitySegmenter|IntensitySegmenter]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/IntensitySegmenter|IntensitySegmenter]] extension)</small>
 +
* [https://github.com/lassoan/SlicerSegmentEditorExtraEffects SegmentEditorWatershed]   <small>(scripted, bundled in [https://github.com/lassoan/SlicerSegmentEditorExtraEffects SegmentEditorExtraEffects] extension)</small>
 
<span id='Modules_by_category_Segmentation_Specialized'></span>
 
<span id='Modules_by_category_Segmentation_Specialized'></span>
 
=== Specialized ===
 
=== Specialized ===
 
* BRAINSROIAuto    <small>(cli, built-in)</small>
 
* BRAINSROIAuto    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Modules/RobustStatisticsSegmenter|Robust Statistics Segmenter]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/RobustStatisticsSegmenter|RobustStatisticsSegmenter]]    <small>(cli, built-in)</small>
−
* EMSegment Command Line   <small>(cli, built-in)</small>
+
* EMSegmentCommandLine   <small>(cli, built-in)</small>
 
<span id='Modules_by_category_Sequences'></span>
 
<span id='Modules_by_category_Sequences'></span>
 
== Sequences ==
 
== Sequences ==
 
* [[Documentation/Nightly/Extensions/Sequences|Sequences]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/Sequences|Sequences]] extension)</small>
 
* [[Documentation/Nightly/Extensions/Sequences|Sequences]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/Sequences|Sequences]] extension)</small>
−
* [[Documentation/Nightly/Extensions/Sequences|Sequence Browser]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/Sequences|Sequences]] extension)</small>
+
* [[Documentation/Nightly/Extensions/Sequences|SequenceBrowser]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/Sequences|Sequences]] extension)</small>
−
* [[Documentation/Nightly/Extensions/Sequences|Metafile Importer]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/Sequences|Sequences]] extension)</small>
+
* [[Documentation/Nightly/Extensions/Sequences|MetafileImporter]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/Sequences|Sequences]] extension)</small>
−
<span id='Modules_by_category_Shape_Analysis'></span>
 
−
== Shape Analysis ==
 
−
* [[Documentation/Nightly/Extensions/Q3DC|Q3DC]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/Q3DC|Q3DC]] extension)</small>
 
−
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MeshStatistics Mesh Statistics]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MeshStatistics Mesh Statistics Extension] extension)</small>
 
−
* [[Documentation/Nightly/Extensions/EasyClip|Easy Clip]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/EasyClip|Easy Clip]] extension)</small>
 
−
* [[Documentation/Nightly/Extensions/MeshToLabelMap|Mesh To Label Map]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/MeshToLabelMap|Mesh To Label Map]] extension)</small>
 
−
* [[Documentation/Nightly/Extensions/ModelToModelDistance|Model To Model Distance]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/ModelToModelDistance|Model To Model Distance]] extension)</small>
 
−
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AnglePlanes Angle Planes]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AnglePlanes Angle Planes Extension] extension)</small>
 
−
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PickAndPaint Pick And Paint]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PickAndPaint Pick And Paint Extension] extension)</small>
 
−
<span id='Modules_by_category_Shape_Analysis_CMF_Registration'></span>
 
−
=== CMF Registration ===
 
−
* [[Documentation/Nightly/Extensions/CMFreg|Apply Matrix]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
 
−
* [[Documentation/Nightly/Modules/LabelAddition|Label Addition]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
 
−
* [[Documentation/Nightly/Modules/Downsize|Downsize]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
 
−
* [[Documentation/Nightly/Modules/SurfaceRegistration|Surface Registration]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
 
−
* [[Documentation/Nightly/Modules/LabelExtraction|Label Extraction]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
 
−
<span id='Modules_by_category_CMF_Registration_Voxelbase_Registration'></span>
 
−
==== Voxelbase Registration ====
 
−
* [[Documentation/Nightly/Modules/NonGrowing|Non Growing]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
 
−
* [[Documentation/Nightly/Modules/Growing|Growing]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
 
−
* [[Documentation/Nightly/Modules/MaskCreation|Mask Creation]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
 
 
<span id='Modules_by_category_Slicelets'></span>
 
<span id='Modules_by_category_Slicelets'></span>
 
== Slicelets ==
 
== Slicelets ==
−
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
+
* [[Documentation/Nightly/Modules/FilmDosimetry|FilmDosimetryAnalysis]]    <small>(scripted, bundled in [[Documentation/Nightly/Modules/FilmDosimetry|FilmDosimetryAnalysis]] extension)</small>
−
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis Algo]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
+
* [[Documentation/Nightly/Modules/GelDosimetry|GelDosimetryAnalysis]]    <small>(scripted, bundled in [[Documentation/Nightly/Modules/GelDosimetry|GelDosimetryAnalysis]] extension)</small>
 +
* [[Documentation/Nightly/Modules/GelDosimetry|GelDosimetryAnalysisAlgo]]    <small>(loadable, bundled in [[Documentation/Nightly/Modules/GelDosimetry|GelDosimetryAnalysis]] extension)</small>
 +
<span id='Modules_by_category_SlicerProstate'></span>
 +
== SlicerProstate ==
 +
* [[Documentation/Nightly/Extensions/SliceTracker|ZFrameCalibration]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SliceTracker|SliceTracker]] extension)</small>
 
<span id='Modules_by_category_Surface_Models'></span>
 
<span id='Modules_by_category_Surface_Models'></span>
 
== Surface Models ==
 
== Surface Models ==
−
* [[Documentation/Nightly/Modules/SurfaceToolbox|Surface Toolbox]]    <small>(scripted, built-in)</small>
+
* [[Documentation/Nightly/Modules/SurfaceToolbox|SurfaceToolbox]]    <small>(scripted, built-in)</small>
−
* [[Documentation/Nightly/Modules/GrayscaleModelMaker|Grayscale Model Maker]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/GrayscaleModelMaker|GrayscaleModelMaker]]    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Modules/ModelMaker|Model Maker]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/ModelMaker|ModelMaker]]    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Modules/ModelToLabelMap|Model To Label Map]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/ModelToLabelMap|ModelToLabelMap]]    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Modules/MergeModels|Merge Models]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/MergeModels|MergeModels]]    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Modules/LabelMapSmoothing|Label Map Smoothing]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/EasyClip|EasyClip]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/EasyClip|EasyClip]] extension)</small>
−
* [[Documentation/Nightly/Modules/ProbeVolumeWithModel|Probe Volume With Model]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/LabelMapSmoothing|LabelMapSmoothing]]    <small>(cli, built-in)</small>
 +
* [[Documentation/Nightly/Extensions/MeshToLabelMap|MeshToLabelMap]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/MeshToLabelMap|MeshToLabelMap]] extension)</small>
 +
* [[Documentation/Nightly/Modules/ProbeVolumeWithModel|ProbeVolumeWithModel]]    <small>(cli, built-in)</small>
 +
* [[Documentation/Nightly/Extensions/SlicerIGT|TextureModel]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
 
<span id='Modules_by_category_TestCases'></span>
 
<span id='Modules_by_category_TestCases'></span>
 
== TestCases ==
 
== TestCases ==
−
* SEGExporter Self Test
+
* SEGExporterSelfTest
 
<span id='Modules_by_category_Testing'></span>
 
<span id='Modules_by_category_Testing'></span>
 
== Testing ==
 
== Testing ==
 
* CLI4Test
 
* CLI4Test
−
* Threshold Threading Test
+
* ThresholdThreadingTest
−
* [[Documentation/Nightly/Extensions/Scoliosis|Scoliosis Monitoring]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/Scoliosis|Scoliosis]] extension)</small>
+
* [[Documentation/Nightly/Extensions/Scoliosis|ScoliosisMonitoring]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/Scoliosis|Scoliosis]] extension)</small>
−
* Slicer MRBSave Restore Check Paths Test
+
* SlicerMRBSaveRestoreCheckPathsTest
 
* CLIROITest    <small>(cli, built-in)</small>
 
* CLIROITest    <small>(cli, built-in)</small>
−
* Performance Tests
+
* PerformanceTests
−
* Slicer MRBTest
+
* SlicerMRBMultipleSaveRestoreTest
−
* Slicer MRBMultiple Save Restore Test
+
* SlicerMRBTest
−
* SEGExporter Self Test
+
* SEGExporterSelfTest
−
* Self Tests
+
* SelfTests
−
* Slicer MRBMultiple Save Restore Loop Test
+
* SlicerMRBMultipleSaveRestoreLoopTest
 
<span id='Modules_by_category_Testing_IGT_Tests'></span>
 
<span id='Modules_by_category_Testing_IGT_Tests'></span>
 
=== IGT Tests ===
 
=== IGT Tests ===
−
* Breach Warning Self Test
+
* BreachWarningSelfTest
−
* Watchdog Self Test
+
* WatchdogSelfTest
 
<span id='Modules_by_category_Testing_SlicerRT_Tests'></span>
 
<span id='Modules_by_category_Testing_SlicerRT_Tests'></span>
 
=== SlicerRT Tests ===
 
=== SlicerRT Tests ===
−
* IGRTWorkflow Self Test
+
* IGRTWorkflow_SelfTest
−
* Dicom Rt Import Self Test
+
* [[Documentation/Nightly/Extensions/SlicerRT|BatchStructureSetConversion]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small>
−
* [[Documentation/Nightly/Extensions/SlicerRT|Batch Structure Set Conversion]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
 
<span id='Modules_by_category_Testing_TestCases'></span>
 
<span id='Modules_by_category_Testing_TestCases'></span>
 
=== TestCases ===
 
=== TestCases ===
−
* Atlas Tests
+
* AtlasTests
−
* Add Storable Data After Scene View Test
+
* AddStorableDataAfterSceneViewTest
−
* test tractography display
+
* test_tractography_display
−
* RSNAQuant Tutorial
+
* SlicerTransformInteractionTest1
−
* Neurosurgical Planning Tutorial Markups Self Test
+
* RSNAQuantTutorial
−
* Change Tracker Self Test
+
* NeurosurgicalPlanningTutorialMarkupsSelfTest
−
* Fiducial Layout Switch Bug1914
+
* ChangeTrackerSelfTest
−
* Graph Cut Segment Self Test
+
* FiducialLayoutSwitchBug1914
 +
* GraphCutSegmentSelfTest
 +
* SlicerBoundsTest
 +
* UtilTest
 
* Charting    <small>(scripted, built-in)</small>
 
* Charting    <small>(scripted, built-in)</small>
−
* [http://brainsia.github.io/CardiacAgatstonMeasures/ Cardiac Agatston Measures]    <small>(scripted, bundled in [http://brainsia.github.io/CardiacAgatstonMeasures/ Cardiac Agatston Measures] extension)</small>
+
* [http://brainsia.github.io/CardiacAgatstonMeasures/ CardiacAgatstonMeasures]    <small>(scripted, bundled in [http://brainsia.github.io/CardiacAgatstonMeasures/ CardiacAgatstonMeasures] extension)</small>
−
* fiber visibility crash2438
+
* fiber_visibility_crash2438
−
* RSNAVis Tutorial
+
* RSNAVisTutorial
 
* JRC2013Vis
 
* JRC2013Vis
−
* Add Many Markups Fiducial Test
+
* AddManyMarkupsFiducialTest
 +
* CropVolumeSelfTest
 +
* SliceLinkLogic    <small>(scripted, built-in)</small>
 +
* VolumeRenderingSceneClose    <small>(scripted, built-in)</small>
 +
* slicerCloseCrashBug2590
 +
* CLIEventTest
 +
* [[Documentation/Nightly/Extensions/SlicerDMRI|NsgPlanTracto]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small>
 +
* MarkupsWidgetsSelfTest
 +
* TablesSelfTest
 +
* SlicerOrientationSelectorTest
 +
* MarkupsInViewsSelfTest
 +
* TwoCLIsInParallelTest
 +
* SubjectHierarchyCorePluginsSelfTest
 +
* SubjectHierarchyGenericSelfTest
 +
* ScenePerformance    <small>(scripted, built-in)</small>
 +
* MarkupsInCompareViewersSelfTest
 +
* sceneImport2428
 +
* RSNA2012ProstateDemo
 +
* DTINotReproducibleIssue3977
 +
* TwoCLIsInARowTest
 +
* ColorsScalarBarSelfTest
 +
* BRAINSFitRigidRegistrationCrashIssue4139
 
* Slicer4Minute    <small>(scripted, built-in)</small>
 
* Slicer4Minute    <small>(scripted, built-in)</small>
−
* Crop Volume Self Test
+
* ViewControllersSliceInterpolationBug1926
−
* Slice Link Logic   <small>(scripted, built-in)</small>
+
<span id='Modules_by_category_Ultrasound'></span>
−
* Volume Rendering Scene Close   <small>(scripted, built-in)</small>
+
== Ultrasound ==
−
* slicer Close Crash Bug2590
+
* [https://kitwaremedical.github.io/SlicerITKUltrasoundDoc/ ScanConvertCurvilinearArray]   <small>(cli, bundled in [https://kitwaremedical.github.io/SlicerITKUltrasoundDoc/ SlicerITKUltrasound] extension)</small>
−
* Tables Self Test
+
* [https://kitwaremedical.github.io/SlicerITKUltrasoundDoc/ ScanConvertPhasedArray3D]   <small>(cli, bundled in [https://kitwaremedical.github.io/SlicerITKUltrasoundDoc/ SlicerITKUltrasound] extension)</small>
−
* Markups In Views Self Test
+
* [https://kitwaremedical.github.io/SlicerITKUltrasoundDoc/ ScanConvertSliceSeries]    <small>(cli, bundled in [https://kitwaremedical.github.io/SlicerITKUltrasoundDoc/ SlicerITKUltrasound] extension)</small>
−
* Subject Hierarchy Core Plugins Self Test
+
<span id='Modules_by_category_Uncategorized'></span>
−
* Subject Hierarchy Generic Self Test
+
== Uncategorized ==
−
* Scene Performance   <small>(scripted, built-in)</small>
+
* [[Documentation/Nightly/Extensions/ShapeQuantifier|ShapeQuantifierCore]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/ShapeQuantifier|ShapeQuantifier]] extension)</small>
−
* Markups In Compare Viewers Self Test
+
* [[Documentation/Nightly/Extensions/DatabaseInteractor|DatabaseInteractorLib]]   <small>(scripted, bundled in [[Documentation/Nightly/Extensions/DatabaseInteractor|DatabaseInteractor]] extension)</small>
−
* scene Import2428
 
−
* RSNA2012Prostate Demo
 
−
* DTINot Reproducible Issue3977
 
−
* Colors Scalar Bar Self Test
 
−
* View Controllers Slice Interpolation Bug1926
 
 
<span id='Modules_by_category_Utilities'></span>
 
<span id='Modules_by_category_Utilities'></span>
 
== Utilities ==
 
== Utilities ==
−
* [[Documentation/Nightly/Modules/DataStore|Data Store]]    <small>(loadable, built-in)</small>
+
* [[Documentation/Nightly/Modules/ScreenCapture|ScreenCapture]]    <small>(scripted, built-in)</small>
−
* BRAINSStrip Rotation   <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/DataStore|DataStore]]    <small>(loadable, built-in)</small>
−
* EMSegment Transform To New Format   <small>(cli, built-in)</small>
+
* DICOMPatcher    <small>(scripted, built-in)</small>
 +
* BRAINSStripRotation   <small>(cli, built-in)</small>
 +
* EMSegmentTransformToNewFormat   <small>(cli, built-in)</small>
 
<span id='Modules_by_category_Utilities_BRAINS'></span>
 
<span id='Modules_by_category_Utilities_BRAINS'></span>
 
=== BRAINS ===
 
=== BRAINS ===
−
* BRAINSTransform Convert   <small>(cli, built-in)</small>
+
* BRAINSTransformConvert   <small>(cli, built-in)</small>
 
<span id='Modules_by_category_Vascular_Modeling_Toolkit'></span>
 
<span id='Modules_by_category_Vascular_Modeling_Toolkit'></span>
 
== Vascular Modeling Toolkit ==
 
== Vascular Modeling Toolkit ==
−
* [http://slicer.vmtk.org/ Centerline Computation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
+
* [http://slicer.vmtk.org/ CenterlineComputation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
−
* [http://slicer.vmtk.org/ Vesselness Filtering]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
+
* [http://slicer.vmtk.org/ LevelSetSegmentation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
−
* [http://slicer.vmtk.org/ Level Set Segmentation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
+
* [http://slicer.vmtk.org/ VesselnessFiltering]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 +
<span id='Modules_by_category_Virtual_Reality'></span>
 +
== Virtual Reality ==
 +
* [[Documentation/Nightly/Modules/VirtualReality|VirtualReality]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerVirtualReality|SlicerVirtualReality]] extension)</small>
 +
<span id='Modules_by_category_Web_System_Tools'></span>
 +
== Web System Tools ==
 +
* [[Documentation/Nightly/Modules/DatabaseInteractor|DatabaseInteractor]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/DatabaseInteractor|DatabaseInteractor]] extension)</small>
 
<span id='Modules_by_category_Wizards'></span>
 
<span id='Modules_by_category_Wizards'></span>
 
== Wizards ==
 
== Wizards ==
−
* [[Documentation/Nightly/Modules/CompareVolumes|Compare Volumes]]    <small>(scripted, built-in)</small>
+
* [[Documentation/Nightly/Modules/CompareVolumes|CompareVolumes]]    <small>(scripted, built-in)</small>
−
* [[Documentation/Nightly/Modules/ChangeTracker|Change Tracker]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/ChangeTracker|Change Tracker]] extension)</small>
+
* [[Documentation/Nightly/Modules/ChangeTracker|ChangeTracker]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/ChangeTracker|ChangeTracker]] extension)</small>
−
<span id='Modules_by_category_Work_in_Progress'></span>
+
<span id='Modules_by_category_XNATSlicer'></span>
−
== Work in Progress ==
+
== XNATSlicer ==
−
* [[Documentation/Nightly/Extensions/LongitudinalPETCT|Longitudinal PETCT]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/LongitudinalPETCT|Longitudinal PETCT]] extension)</small>
+
* [[Documentation/Nightly/Extensions/XNATSlicer|XnatSlicer]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/XNATSlicer|XNATSlicer]] extension)</small>
 +
 
 
= Modules by name =
 
= Modules by name =
−
314 modules:
+
367 modules:
 
* [http://www.nitrc.org/projects/abc ABC]    <small>(cli, bundled in [http://www.nitrc.org/projects/abc ABC] extension)</small>
 
* [http://www.nitrc.org/projects/abc ABC]    <small>(cli, bundled in [http://www.nitrc.org/projects/abc ABC] extension)</small>
 
* [[Documentation/Nightly/Modules/ACPCTransform|ACPCTransform]]    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/ACPCTransform|ACPCTransform]]    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Modules/AddScalarVolumes|Add Scalar Volumes]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/AddScalarVolumes|AddScalarVolumes]]    <small>(cli, built-in)</small>
−
* [http://www.chestimagingplatform.org Airway Inspector]    <small>(loadable, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org AirwayInspector]    <small>(loadable, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [[Documentation/Nightly/Modules/AirwaySegmentation|Airway Segmentation]]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation] extension)</small>
+
* [[Documentation/Nightly/Modules/AirwaySegmentation|AirwaySegmentation]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/AirwaySegmentation|AirwaySegmentation]] extension)</small>
−
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation CLI]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation] extension)</small>
+
* [[Documentation/Nightly/Extensions/AirwaySegmentation|AirwaySegmentationCLI]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/AirwaySegmentation|AirwaySegmentation]] extension)</small>
−
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AnglePlanes Angle Planes]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AnglePlanes Angle Planes Extension] extension)</small>
+
* [[Documentation/Nightly/Modules/AnglePlanes|AnglePlanes]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/ShapeQuantifier|ShapeQuantifier]] extension)</small>
 
* [[Documentation/Nightly/Modules/Annotations|Annotations]]    <small>(loadable, built-in)</small>
 
* [[Documentation/Nightly/Modules/Annotations|Annotations]]    <small>(loadable, built-in)</small>
−
* [[Documentation/Nightly/Extensions/CMFreg|Apply Matrix]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
+
* [[Documentation/Nightly/Extensions/CMFreg|ApplyMatrix]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
−
* [[Documentation/Nightly/Extensions/SlicerRT|Beams]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
+
* [[Documentation/Nightly/Modules/AstroMasking|AstroMasking]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
−
* [[Documentation/Nightly/Extensions/IASEM|Bin Shrink]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small>
+
* [[Documentation/Nightly/Modules/AstroModeling|AstroModeling]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
−
* [[Documentation/Nightly/Modules/BodyCentricCubicMesh|Body Centric Cubic Mesh]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]] extension)</small>
+
* [[Documentation/Nightly/Modules/AstroMomentMaps|AstroMomentMaps]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
−
* [[Documentation/Nightly/Modules/BRAINSDemonWarp|BRAINSDemon Warp]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/AstroProfiles|AstroProfiles]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
 +
* [[Documentation/Nightly/Modules/AstroPVDiagram|AstroPVDiagram]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
 +
* [[Documentation/Nightly/Modules/AstroPVSlice|AstroPVSlice]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
 +
* [[Documentation/Nightly/Modules/AstroReproject|AstroReproject]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
 +
* [[Documentation/Nightly/Extensions/SlicerAstro|AstroSampleData]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
 +
* [[Documentation/Nightly/Modules/AstroSmoothing|AstroSmoothing]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
 +
* [[Documentation/Nightly/Modules/AstroStatistics|AstroStatistics]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
 +
* [[Documentation/Nightly/Modules/AstroVolume|AstroVolume]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
 +
* [[Documentation/Nightly/Extensions/SlicerAstro|AstroWelcome]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
 +
* [[Documentation/Nightly/Extensions/SlicerRT|Beams]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small>
 +
* [[Documentation/Nightly/Extensions/IASEM|BinShrink]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small>
 +
* [[Documentation/Nightly/Extensions/OpenCVExample|BlendVectorVolumes]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/OpenCVExample|OpenCVExample]] extension)</small>
 +
* [[Documentation/Nightly/Modules/BodyCentricCubicMesh|BodyCentricCubicMesh]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CBC_3D_I2MConversion|CBC_3D_I2MConversion]] extension)</small>
 +
* [[Documentation/Nightly/Modules/BRAINSDemonWarp|BRAINSDemonWarp]]    <small>(cli, built-in)</small>
 
* BRAINSDWICleanup    <small>(cli, built-in)</small>
 
* BRAINSDWICleanup    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/BRAINSFit|BRAINSFit]]    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/BRAINSFit|BRAINSFit]]    <small>(cli, built-in)</small>
−
* BRAINSLabel Stats   <small>(cli, built-in)</small>
+
* BRAINSLabelStats   <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/BRAINSResample|BRAINSResample]]    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/BRAINSResample|BRAINSResample]]    <small>(cli, built-in)</small>
 
* BRAINSResize    <small>(cli, built-in)</small>
 
* BRAINSResize    <small>(cli, built-in)</small>
 
* BRAINSROIAuto    <small>(cli, built-in)</small>
 
* BRAINSROIAuto    <small>(cli, built-in)</small>
−
* BRAINSStrip Rotation   <small>(cli, built-in)</small>
+
* BRAINSStripRotation   <small>(cli, built-in)</small>
−
* BRAINSTransform Convert   <small>(cli, built-in)</small>
+
* BRAINSTransformConvert   <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Extensions/SlicerIGT|Breach Warning]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
+
* [[Documentation/Nightly/Extensions/SlicerIGT|BreachWarning]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
−
* [https://github.com/SlicerIGT/LumpNav Breach Warning Light]    <small>(scripted, bundled in [https://github.com/SlicerIGT/LumpNav Lump Nav] extension)</small>
+
* [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|CarreraSlice]]    <small>(loadable, bundled in [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|CarreraSlice]] extension)</small>
−
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]    <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
+
* [[Documentation/Nightly/Modules/CastScalarVolume|CastScalarVolume]]    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Modules/CastScalarVolume|Cast Scalar Volume]]    <small>(cli, built-in)</small>
+
* [http://slicer.vmtk.org/ CenterlineComputation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
−
* [http://slicer.vmtk.org/ Centerline Computation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
+
* [[Documentation/Nightly/Modules/ChangeTracker|ChangeTracker]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/ChangeTracker|ChangeTracker]] extension)</small>
−
* [[Documentation/Nightly/Modules/ChangeTracker|Change Tracker]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/ChangeTracker|Change Tracker]] extension)</small>
+
* [[Documentation/Nightly/Modules/CheckerBoardFilter|CheckerBoardFilter]]    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Modules/CheckerBoardFilter|Checker Board Filter]]    <small>(cli, built-in)</small>
+
* [http://www.chestimagingplatform.org CIP_]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org CIP Common]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org CIP_BodyComposition]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Classify Fissure Particles]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org CIP_CalciumScoring]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [[Documentation/Nightly/Extensions/CleaverExtension|Cleaver CLI]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CleaverExtension|Cleaver Extension]] extension)</small>
+
* [http://www.chestimagingplatform.org CIP_Common]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Automatic Left Atrial Scar]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [http://www.chestimagingplatform.org CIP_InteractiveLobeSegmentation]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Axial Dilate]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [http://www.chestimagingplatform.org CIP_LesionModel]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Boolean REMOVEFilter]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [http://www.chestimagingplatform.org CIP_MIPViewer]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Connected Threshold Filter]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [http://www.chestimagingplatform.org CIP_PAARatio]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Inhomogeneity Correction]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [http://www.chestimagingplatform.org CIP_ParenchymaAnalysis]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Isolated Connected Filter]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [http://www.chestimagingplatform.org CIP_ParenchymaSubtypeTraining]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit LASegmentation Graph Cuts]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [http://www.chestimagingplatform.org CIP_PointsLabelling]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit PVAntrum Cut]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [http://www.chestimagingplatform.org CIP_TracheaStentPlanning]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [http://www.chestimagingplatform.org ClassifyFissureParticles]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration BRAINSFit]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [[Documentation/Nightly/Extensions/CleaverExtension|CleaverCLI]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CleaverExtension|CleaverExtension]] extension)</small>
−
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Wizard]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkitAutomaticLeftAtrialScar]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac_MRI_Toolkit] extension)</small>
−
* [[Documentation/Nightly/Modules/CollectFiducials|Collect Fiducials]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
+
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkitAxialDilate]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac_MRI_Toolkit] extension)</small>
 +
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkitBooleanREMOVEFilter]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac_MRI_Toolkit] extension)</small>
 +
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkitConnectedThresholdFilter]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac_MRI_Toolkit] extension)</small>
 +
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkitInhomogeneityCorrection]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac_MRI_Toolkit] extension)</small>
 +
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkitIsolatedConnectedFilter]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac_MRI_Toolkit] extension)</small>
 +
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkitLASegmentationGraphCuts]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac_MRI_Toolkit] extension)</small>
 +
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkitPVAntrumCut]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac_MRI_Toolkit] extension)</small>
 +
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkitRegistration]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac_MRI_Toolkit] extension)</small>
 +
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkitRegistrationBRAINSFit]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac_MRI_Toolkit] extension)</small>
 +
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkitWizard]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac_MRI_Toolkit] extension)</small>
 +
* [[Documentation/Nightly/Modules/CollectFiducials|CollectFiducials]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
 
* [[Documentation/Nightly/Modules/Colors|Colors]]    <small>(loadable, built-in)</small>
 
* [[Documentation/Nightly/Modules/Colors|Colors]]    <small>(loadable, built-in)</small>
−
* [[Documentation/Nightly/Modules/CompareVolumes|Compare Volumes]]    <small>(scripted, built-in)</small>
+
* [[Documentation/Nightly/Modules/CompareVolumes|CompareVolumes]]    <small>(scripted, built-in)</small>
−
* [http://www.chestimagingplatform.org Compute Cross Sectional Area]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org ComputeCrossSectionalArea]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Compute Distance Map]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org ComputeDistanceMap]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Compute Feature Strength]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org ComputeFeatureStrength]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Compute Fissure Feature Vectors]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org ComputeFissureFeatureVectors]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Compute Intensity Statistics]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org ComputeIntensityStatistics]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Convert Chest Region Chest Type To Label Map Value]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org ConvertChestRegionChestTypeToLabelMapValue]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Convert Dicom]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org ConvertDicom]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Convert Label Map Value To Chest Region Chest Type]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org ConvertLabelMapValueToChestRegionChestType]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [[Documentation/Nightly/Extensions/UKFTractography|Convert VTK]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/UKFTractography|UKFTractography]] extension)</small>
+
* [[Documentation/Nightly/Extensions/UKFTractography|ConvertVTK]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/UKFTractography|UKFTractography]] extension)</small>
−
* [[Documentation/Nightly/Modules/CornerAnnotation|Corner Annotation]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/CornerAnnotation|Corner Annotation]] extension)</small>
+
* [[Documentation/Nightly/Modules/CornerAnnotation|CornerAnnotation]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/CornerAnnotation|CornerAnnotation]] extension)</small>
−
* [[Documentation/Nightly/Modules/CreateDICOMSeries|Create DICOMSeries]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/CreateDICOMSeries|CreateDICOMSeries]]    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Extensions/SlicerIGT|Create Models]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
+
* [[Documentation/Nightly/Extensions/SlicerIGT|CreateModels]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
−
* [http://www.chestimagingplatform.org Crop Lung]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org CropLung]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [[Documentation/Nightly/Modules/CropVolume|Crop Volume]]    <small>(loadable, built-in)</small>
+
* [[Documentation/Nightly/Modules/CropVolume|CropVolume]]    <small>(loadable, built-in)</small>
−
* [[Documentation/Nightly/Modules/CurvatureAnisotropicDiffusion|Curvature Anisotropic Diffusion]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/CurvatureAnisotropicDiffusion|CurvatureAnisotropicDiffusion]]    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Extensions/CurveMaker|Curve Maker]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/CurveMaker|Curve Maker]] extension)</small>
+
* [[Documentation/Nightly/Extensions/CurveMaker|CurveMaker]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/CurveMaker|CurveMaker]] extension)</small>
 
* [[Documentation/Nightly/Modules/Data|Data]]    <small>(loadable, built-in)</small>
 
* [[Documentation/Nightly/Modules/Data|Data]]    <small>(loadable, built-in)</small>
−
* [[Documentation/Nightly/Modules/DataProbe|Data Probe]]    <small>(scripted, built-in)</small>
+
* [[Documentation/Nightly/Modules/DatabaseInteractor|DatabaseInteractor]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/DatabaseInteractor|DatabaseInteractor]] extension)</small>
−
* [[Documentation/Nightly/Modules/DataStore|Data Store]]    <small>(loadable, built-in)</small>
+
* [[Documentation/Nightly/Extensions/DatabaseInteractor|DatabaseInteractorLib]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/DatabaseInteractor|DatabaseInteractor]] extension)</small>
−
* [[Documentation/Nightly/Modules/DiceComputation|Dice Computation]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/DiceComputation|Dice Computation]] extension)</small>
+
* [[Documentation/Nightly/Modules/DataProbe|DataProbe]]    <small>(scripted, built-in)</small>
 +
* [[Documentation/Nightly/Modules/DataStore|DataStore]]    <small>(loadable, built-in)</small>
 +
* [[Documentation/Nightly/Modules/DeepInfer|DeepInfer]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/DeepInfer|DeepInfer]] extension)</small>
 +
* [[Documentation/Nightly/Modules/DiceComputation|DiceComputation]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/DiceComputation|DiceComputation]] extension)</small>
 
* [[Documentation/Nightly/Modules/DICOM|DICOM]]    <small>(scripted, built-in)</small>
 
* [[Documentation/Nightly/Modules/DICOM|DICOM]]    <small>(scripted, built-in)</small>
−
* DICOM2Full Brain Tractography   <small>(scripted, built-in)</small>
+
* [[Documentation/Nightly/Extensions/SlicerDMRI|DICOM2FullBrainTractography]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small>
−
* [[Documentation/Nightly/Extensions/SlicerRT|Dicom Rt Import Export]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
+
* DICOMPatcher   <small>(scripted, built-in)</small>
−
* [[Documentation/Nightly/Modules/DicomSroExport|Dicom Sro Export]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
+
* [[Documentation/Nightly/Extensions/SlicerRT|DicomRtImportExport]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small>
−
* [[Documentation/Nightly/Modules/DicomSroImport|Dicom Sro Import]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
+
* [[Documentation/Nightly/Modules/DicomSroExport|DicomSroExport]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small>
−
* [[Documentation/Nightly/Modules/DiffusionTensorScalarMeasurements|Diffusion Tensor Scalar Measurements]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/DicomSroImport|DicomSroImport]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small>
−
* [[Documentation/Nightly/Modules/DiffusionWeightedVolumeMasking|Diffusion Weighted Volume Masking]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Extensions/SlicerDMRI|DICOMTract_to_VTK]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small>
−
* [[Documentation/Nightly/Modules/DistanceMapBasedRegistration|Distance Map Based Registration]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerProstate|Slicer Prostate]] extension)</small>
+
* [[Documentation/Nightly/Modules/DiffusionTensorScalarMeasurements|DiffusionTensorScalarMeasurements]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small>
−
* [[Documentation/Nightly/Modules/DoseAccumulation|Dose Accumulation]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
+
* [[Documentation/Nightly/Modules/DiffusionWeightedVolumeMasking|DiffusionWeightedVolumeMasking]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small>
−
* [[Documentation/Nightly/Modules/DoseComparison|Dose Comparison]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
+
* [[Documentation/Nightly/Modules/DistanceMapBasedRegistration|DistanceMapBasedRegistration]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerProstate|SlicerProstate]] extension)</small>
−
* [[Documentation/Nightly/Extensions/MarginCalculator|Dose Morphology]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/MarginCalculator|Margin Calculator]] extension)</small>
+
* [[Documentation/Nightly/Modules/DMRIInstall|DMRIInstall]]    <small>(scripted, built-in)</small>
−
* [[Documentation/Nightly/Extensions/MarginCalculator|Dose Population Histogram]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/MarginCalculator|Margin Calculator]] extension)</small>
+
* [[Documentation/Nightly/Modules/DoseAccumulation|DoseAccumulation]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small>
−
* [[Documentation/Nightly/Modules/DoseVolumeHistogram|Dose Volume Histogram]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
+
* [[Documentation/Nightly/Modules/DoseComparison|DoseComparison]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small>
 +
* [[Documentation/Nightly/Extensions/MarginCalculator|DoseMorphology]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/MarginCalculator|MarginCalculator]] extension)</small>
 +
* [[Documentation/Nightly/Modules/DoseVolumeHistogram|DoseVolumeHistogram]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small>
 
* [[Documentation/Nightly/Modules/Downsize|Downsize]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
 
* [[Documentation/Nightly/Modules/Downsize|Downsize]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
−
* [[Documentation/Nightly/Modules/dPetBrainQuantification|d Pet Brain Quantification]]    <small>(scripted, bundled in [http://gti-fing.github.io/SlicerPetSpectAnalysis Pet Spect Analysis] extension)</small>
+
* [[Documentation/Nightly/Modules/dPetBrainQuantification|dPetBrainQuantification]]    <small>(scripted, bundled in [http://gti-fing.github.io/SlicerPetSpectAnalysis PetSpectAnalysis] extension)</small>
−
* [[Documentation/Nightly/Extensions/SlicerRT|Dvh Comparison]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
+
* [http://slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/DSC_MRI_Analysis DSCMRIAnalysis]    <small>(cli, bundled in [http://slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/DSC_MRI_Analysis DSCMRIAnalysis] extension)</small>
 +
* DumpSEGFrame    <small>(cli)</small>
 +
* [[Documentation/Nightly/Extensions/SlicerRT|DvhComparison]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small>
 
* DWIConvert    <small>(cli, built-in)</small>
 
* DWIConvert    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Modules/DWIJointRicianLMMSEFilter|DWIJoint Rician LMMSEFilter]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/DWIToDTIEstimation|DWIToDTIEstimation]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small>
−
* [[Documentation/Nightly/Modules/DWIRicianLMMSEFilter|DWIRician LMMSEFilter]]   <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/DWModeling|DWModeling]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerProstate|SlicerProstate]] extension)</small>
−
* [[Documentation/Nightly/Modules/DWIToDTIEstimation|DWITo DTIEstimation]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/EasyClip|EasyClip]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/EasyClip|EasyClip]] extension)</small>
−
* [[Documentation/Nightly/Modules/DWModeling|DWModeling]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerProstate|Slicer Prostate]] extension)</small>
 
−
* [[Documentation/Nightly/Extensions/EasyClip|Easy Clip]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/EasyClip|Easy Clip]] extension)</small>
 
 
* [[Documentation/Nightly/Modules/Editor|Editor]]    <small>(scripted, built-in)</small>
 
* [[Documentation/Nightly/Modules/Editor|Editor]]    <small>(scripted, built-in)</small>
 
* [[Documentation/Nightly/Modules/EMSegment|EMSegment]]    <small>(loadable, built-in)</small>
 
* [[Documentation/Nightly/Modules/EMSegment|EMSegment]]    <small>(loadable, built-in)</small>
−
* EMSegment Command Line   <small>(cli, built-in)</small>
+
* EMSegmentCommandLine   <small>(cli, built-in)</small>
−
* EMSegment Quick   <small>(loadable, built-in)</small>
+
* EMSegmentQuick   <small>(loadable, built-in)</small>
−
* EMSegment Transform To New Format   <small>(cli, built-in)</small>
+
* EMSegmentTransformToNewFormat   <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Extensions/Reporting|Encode SEG]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/Reporting|Reporting]] extension)</small>
+
* [[Documentation/Nightly/Modules/EncodeSEG|EncodeSEG]]    <small>(cli)</small>
 
* [[Documentation/Nightly/Modules/Endoscopy|Endoscopy]]    <small>(scripted, built-in)</small>
 
* [[Documentation/Nightly/Modules/Endoscopy|Endoscopy]]    <small>(scripted, built-in)</small>
−
* [http://www.chestimagingplatform.org Enhance Fissures In Image]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org EnhanceFissuresInImage]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Evaluate Lung Lobe Segmentation Results]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org EvaluateLungLobeSegmentationResults]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Execute System Command]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org ExecuteSystemCommand]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Extract Chest Label Map]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [[Documentation/Nightly/Extensions/SlicerRT|ExternalBeamPlanning]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small>
−
* [http://www.chestimagingplatform.org Extract Fissure Boundary From Lobe Map]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org ExtractChestLabelMap]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Extract Particles From Chest Region Chest Type]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org ExtractFissureBoundaryFromLobeMap]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [[Documentation/Nightly/Modules/ExtractSkeleton|Extract Skeleton]]    <small>(cli, built-in)</small>
+
* [http://www.chestimagingplatform.org ExtractParticlesFromChestRegionChestType]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [[Documentation/Nightly/Modules/FastGrowCut|Fast Grow Cut]]    <small>(loadable, bundled in [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect] extension)</small>
+
* [[Documentation/Nightly/Modules/ExtractSkeleton|ExtractSkeleton]]    <small>(cli, built-in)</small>
−
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Fast Grow Cut Segmenter]    <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
+
* [[Documentation/Nightly/Modules/FastGrowCut|FastGrowCut]]    <small>(loadable, bundled in [[Documentation/4.3/Modules/FastGrowCut|FastGrowCutEffect]] extension)</small>
−
* Fiber Bundle Label Select   <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|FastGrowCutSegmenter]]    <small>(loadable, bundled in [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|CarreraSlice]] extension)</small>
−
* [[Documentation/Nightly/Modules/FiberBundleToLabelMap|Fiber Bundle To Label Map]]    <small>(scripted, built-in)</small>
+
* [[Documentation/Nightly/Modules/FiberBundleLabelSelect|FiberBundleLabelSelect]]   <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small>
−
* Fiber Post Process   <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/FiberBundleToLabelMap|FiberBundleToLabelMap]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small>
−
* Fiber Tract Measurements    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/FiberTractMeasurements|FiberTractMeasurements]]   <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small>
−
* [[Documentation/Nightly/Modules/FiducialRegistration|Fiducial Registration]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/FiducialRegistration|FiducialRegistration]]    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Extensions/SlicerIGT|Fiducial Registration Wizard]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
+
* [[Documentation/Nightly/Extensions/SlicerIGT|FiducialRegistrationWizard]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
−
* [[Documentation/Nightly/Extensions/SlicerIGT|Fiducials To Model Registration]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
+
* [[Documentation/Nightly/Extensions/SlicerIGT|FiducialsToModelRegistration]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
−
* [http://www.chestimagingplatform.org Filter Airway Particle Data]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [[Documentation/Nightly/Modules/FilmDosimetry|FilmDosimetryAnalysis]]    <small>(scripted, bundled in [[Documentation/Nightly/Modules/FilmDosimetry|FilmDosimetryAnalysis]] extension)</small>
−
* [http://www.chestimagingplatform.org Filter Connected Components]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org FilterAirwayParticleData]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Filter Fissure Particle Data]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org FilterConnectedComponents]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Filter Vessel Particle Data]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org FilterFissureParticleData]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Find Patch Match]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org FilterVesselParticleData]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [[Documentation/Nightly/Modules/FinslerBacktracing|Finsler Backtracing]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/FinslerTractography|Finsler Tractography]] extension)</small>
+
* [http://www.chestimagingplatform.org FindPatchMatch]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [[Documentation/Nightly/Modules/FinslerTractography|Finsler Tractography]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/FinslerTractography|Finsler Tractography]] extension)</small>
+
* [http://www.chestimagingplatform.org FitLobeSurfaceModelsToParticleData]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Fit Lobe Surface Models To Particle Data]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [[Documentation/Nightly/Modules/GaussianBlurImageFilter|GaussianBlurImageFilter]]    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Modules/GaussianBlurImageFilter|Gaussian Blur Image Filter]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/GelDosimetry|GelDosimetryAnalysis]]    <small>(scripted, bundled in [[Documentation/Nightly/Modules/GelDosimetry|GelDosimetryAnalysis]] extension)</small>
−
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
+
* [[Documentation/Nightly/Modules/GelDosimetry|GelDosimetryAnalysisAlgo]]    <small>(loadable, bundled in [[Documentation/Nightly/Modules/GelDosimetry|GelDosimetryAnalysis]] extension)</small>
−
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis Algo]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
+
* [http://www.chestimagingplatform.org GenerateAtlasConvexHull]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Generate Atlas Convex Hull]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org GenerateBinaryThinning3D]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Generate Binary Thinning3D]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org GenerateDistanceMapFromLabelMap]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Generate Distance Map From Label Map]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org GenerateImageSubVolumes]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Generate Image Sub Volumes]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org GenerateLesionSegmentation]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Generate Lesion Segmentation]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org GenerateLobeSurfaceModels]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Generate Lobe Surface Models]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org GenerateMedianFilteredImage]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Generate Median Filtered Image]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org GenerateModel]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Generate NLMFiltered Image]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org GenerateNLMFilteredImage]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Generate Otsu Lung Cast]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org GenerateOtsuLungCast]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Generate Overlay Images]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org GenerateOverlayImages]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Generate Partial Lung Label Map]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org GenerateParenchymaPhenotypes]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Generate Region Histograms And Parenchyma Phenotypes]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org GeneratePartialLungLabelMap]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Generate Stenciled Label Map From Particles]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org GenerateSimpleLungMask]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Get Structures In Label Map]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org GenerateStenciledLabelMapFromParticles]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Get Transformation Kappa]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org GetStructuresInLabelMap]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Get Transformation Kappa2D]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org GetTransformationKappa]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Get Transformation Similarity Metric]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org GetTransformationKappa2D]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [[Documentation/Nightly/Modules/GradientAnisotropicDiffusion|Gradient Anisotropic Diffusion]]    <small>(cli, built-in)</small>
+
* [http://www.chestimagingplatform.org GetTransformationSimilarityMetric]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://publish.uwo.ca/~dchen285/GraphCutSegment/GraphCutSegment.html Graph Cut Interactive Segmenter]    <small>(loadable, bundled in [http://publish.uwo.ca/~dchen285/GraphCutSegment/GraphCutSegment.html Graph Cut Segment] extension)</small>
+
* [[Documentation/Nightly/Modules/GradientAnisotropicDiffusion|GradientAnisotropicDiffusion]]    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Modules/GrayscaleFillHoleImageFilter|Grayscale Fill Hole Image Filter]]    <small>(cli, built-in)</small>
+
* [http://publish.uwo.ca/~dchen285/GraphCutSegment/GraphCutSegment.html GraphCutInteractiveSegmenter]    <small>(loadable, bundled in [http://publish.uwo.ca/~dchen285/GraphCutSegment/GraphCutSegment.html GraphCutSegment] extension)</small>
−
* [[Documentation/Nightly/Modules/GrayscaleGrindPeakImageFilter|Grayscale Grind Peak Image Filter]]    <small>(cli, built-in)</small>
+
* [http://www.chestimagingplatform.org GraphCutsOptimization]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [[Documentation/Nightly/Modules/GrayscaleModelMaker|Grayscale Model Maker]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/GrayscaleFillHoleImageFilter|GrayscaleFillHoleImageFilter]]    <small>(cli, built-in)</small>
 +
* [[Documentation/Nightly/Modules/GrayscaleGrindPeakImageFilter|GrayscaleGrindPeakImageFilter]]    <small>(cli, built-in)</small>
 +
* [[Documentation/Nightly/Modules/GrayscaleModelMaker|GrayscaleModelMaker]]    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/Growing|Growing]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
 
* [[Documentation/Nightly/Modules/Growing|Growing]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
−
* [[Documentation/Nightly/Modules/GyroGuide|Gyro Guide]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/GyroGuide|Gyro Guide]] extension)</small>
+
* [[Documentation/Nightly/Modules/GyroGuide|GyroGuide]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/GyroGuide|GyroGuide]] extension)</small>
−
* [[Documentation/Nightly/Modules/HeterogeneityCAD|Heterogeneity CAD]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/OpenCAD|Open CAD]] extension)</small>
+
* [[Documentation/Nightly/Modules/HeterogeneityCAD|HeterogeneityCAD]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/OpenCAD|OpenCAD]] extension)</small>
−
* [[Documentation/Nightly/Modules/HistogramMatching|Histogram Matching]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/HistogramMatching|HistogramMatching]]    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Extensions/IASEM|IASEMImport]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small>
 
* [[Documentation/Nightly/Extensions/IASEM|IASEMImport]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small>
−
* [[Documentation/Nightly/Extensions/IASEM|IASEMImport Series]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small>
+
* [[Documentation/Nightly/Extensions/IASEM|IASEMImportSeries]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small>
−
* [[Documentation/Nightly/Extensions/iGyne|i Gyne]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/iGyne|i Gyne]] extension)</small>
+
* [[Documentation/Nightly/Extensions/iGyne|iGyne]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/iGyne|iGyne]] extension)</small>
−
* [[Documentation/Nightly/Modules/ImageLabelCombine|Image Label Combine]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/ImageLabelCombine|ImageLabelCombine]]    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Modules/IntensityDifferenceMetric|Intensity Difference Metric]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/ChangeTracker|Change Tracker]] extension)</small>
+
* [[Documentation/Nightly/Modules/IntensityDifferenceMetric|IntensityDifferenceMetric]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/ChangeTracker|ChangeTracker]] extension)</small>
−
* [[Documentation/Nightly/Extensions/IntensitySegmenter|Intensity Segmenter]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/IntensitySegmenter|Intensity Segmenter]] extension)</small>
+
* [[Documentation/Nightly/Extensions/IntensitySegmenter|IntensitySegmenter]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/IntensitySegmenter|IntensitySegmenter]] extension)</small>
−
* [http://www.chestimagingplatform.org Interactive Lobe Segmentation]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* IslandRemoval    <small>(cli, built-in)</small>
−
* Island Removal   <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/Isodose|Isodose]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small>
−
* [[Documentation/Nightly/Modules/Isodose|Isodose]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
+
* [[Documentation/Nightly/Extensions/DCMQI|itkimage2paramap]]   <small>(cli, bundled in [[Documentation/Nightly/Extensions/DCMQI|DCMQI]] extension)</small>
−
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter KUtil]    <small>(scripted, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
+
* [[Documentation/Nightly/Extensions/DCMQI|itkimage2segimage]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/DCMQI|DCMQI]] extension)</small>
−
* [[Documentation/Nightly/Modules/LabelAddition|Label Addition]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
+
* [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|KUtil]]    <small>(scripted, bundled in [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|CarreraSlice]] extension)</small>
−
* [[Documentation/Nightly/Modules/LabelExtraction|Label Extraction]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
+
* [[Documentation/Nightly/Modules/LabelAddition|LabelAddition]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
−
* [http://www.chestimagingplatform.org Label Map From Region And Type Points]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [[Documentation/Nightly/Modules/LabelExtraction|LabelExtraction]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
−
* [[Documentation/Nightly/Modules/LabelMapSmoothing|Label Map Smoothing]]    <small>(cli, built-in)</small>
+
* [http://www.chestimagingplatform.org LabelMapFromRegionAndTypePoints]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [[Documentation/Nightly/Extensions/IASEM|Label Object Statistics]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small>
+
* [[Documentation/Nightly/Modules/LabelMapSmoothing|LabelMapSmoothing]]    <small>(cli, built-in)</small>
−
* [http://www.chestimagingplatform.org Label Particles By Chest Region Chest Type]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [[Documentation/Nightly/Extensions/IASEM|LabelObjectStatistics]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small>
−
* [[Documentation/Nightly/Modules/LabelStatistics|Label Statistics]]    <small>(scripted, built-in)</small>
+
* [http://www.chestimagingplatform.org LabelParticlesByChestRegionChestType]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [[Documentation/Nightly/Modules/LandmarkRegistration|Landmark Registration]]    <small>(scripted, built-in)</small>
+
* [[Documentation/Nightly/Modules/LabelStatistics|LabelStatistics]]    <small>(scripted, built-in)</small>
−
* [[Documentation/Nightly/Modules/LAScarSegmenter|LAScar Segmenter]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/LAScarSegmenter|LAScar Segmenter]] extension)</small>
+
* [[Documentation/Nightly/Modules/LandmarkRegistration|LandmarkRegistration]]    <small>(scripted, built-in)</small>
−
* [[Documentation/Nightly/Modules/LASegmentationWorkflow|LASegmentation Workflow]]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [[Documentation/Nightly/Modules/LAScarSegmenter|LAScarSegmenter]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/LAScarSegmenter|LAScarSegmenter]] extension)</small>
−
* [http://slicer.vmtk.org/ Level Set Segmentation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
+
* [[Documentation/Nightly/Modules/LASegmentationWorkflow|LASegmentationWorkflow]]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac_MRI_Toolkit] extension)</small>
−
* [[Documentation/Nightly/Extensions/LightWeightRobotIGT|Light Weight Robot IGT]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/LightWeightRobotIGT|Light Weight Robot IGT]] extension)</small>
+
* [http://slicer.vmtk.org/ LevelSetSegmentation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
−
* [[Documentation/Nightly/Extensions/LongitudinalPETCT|Longitudinal PETCT]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/LongitudinalPETCT|Longitudinal PETCT]] extension)</small>
+
* [[Documentation/Nightly/Extensions/MarginCalculator|MarginCalculator]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/MarginCalculator|MarginCalculator]] extension)</small>
−
* [https://github.com/SlicerIGT/LumpNav Lump Nav]    <small>(scripted, bundled in [https://github.com/SlicerIGT/LumpNav Lump Nav] extension)</small>
 
−
* [[Documentation/Nightly/Extensions/MarginCalculator|Margin Calculator]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/MarginCalculator|Margin Calculator]] extension)</small>
 
 
* [[Documentation/Nightly/Modules/Markups|Markups]]    <small>(loadable, built-in)</small>
 
* [[Documentation/Nightly/Modules/Markups|Markups]]    <small>(loadable, built-in)</small>
−
* [[Documentation/Nightly/Extensions/SlicerIGT|Markups To Model]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
+
* [[Documentation/Nightly/Extensions/SlicerIGT|MarkupsToModel]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
−
* [[Documentation/Nightly/Modules/MaskCreation|Mask Creation]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
+
* [[Documentation/Nightly/Modules/MaskCreation|MaskCreation]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
−
* [http://www.chestimagingplatform.org Mask Out Label Map Structures]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org MaskOutLabelMapStructures]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [[Documentation/Nightly/Modules/MaskScalarVolume|Mask Scalar Volume]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/MaskScalarVolume|MaskScalarVolume]]    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Modules/MedianImageFilter|Median Image Filter]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/MedianImageFilter|MedianImageFilter]]    <small>(cli, built-in)</small>
−
* [http://www.chestimagingplatform.org Merge Chest Label Maps]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org MergeChestLabelMaps]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [[Documentation/Nightly/Modules/MergeModels|Merge Models]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/MergeModels|MergeModels]]    <small>(cli, built-in)</small>
−
* [http://www.chestimagingplatform.org Merge Particle Data Sets]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org MergeParticleDataSets]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [[Documentation/Nightly/Modules/MeshCompression|Mesh Compression]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]] extension)</small>
+
* [[Documentation/Nightly/Modules/MeshStatistics|MeshStatistics]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/MeshStatistics|MeshStatisticsExtension]] extension)</small>
−
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MeshStatistics Mesh Statistics]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MeshStatistics Mesh Statistics Extension] extension)</small>
+
* [[Documentation/Nightly/Extensions/MeshToLabelMap|MeshToLabelMap]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/MeshToLabelMap|MeshToLabelMap]] extension)</small>
−
* [[Documentation/Nightly/Extensions/MeshToLabelMap|Mesh To Label Map]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/MeshToLabelMap|Mesh To Label Map]] extension)</small>
+
* [[Documentation/Nightly/Extensions/Sequences|MetafileImporter]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/Sequences|Sequences]] extension)</small>
−
* [[Documentation/Nightly/Extensions/Sequences|Metafile Importer]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/Sequences|Sequences]] extension)</small>
+
* [[Documentation/Nightly/Modules/ModelMaker|ModelMaker]]    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Modules/ModelMaker|Model Maker]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Extensions/SlicerIGT|ModelRegistration]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
−
* [[Documentation/Nightly/Extensions/SlicerIGT|Model Registration]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 
 
* [[Documentation/Nightly/Modules/Models|Models]]    <small>(loadable, built-in)</small>
 
* [[Documentation/Nightly/Modules/Models|Models]]    <small>(loadable, built-in)</small>
−
* [[Documentation/Nightly/Modules/ModelToLabelMap|Model To Label Map]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/ModelToLabelMap|ModelToLabelMap]]    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Extensions/ModelToModelDistance|Model To Model Distance]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/ModelToModelDistance|Model To Model Distance]] extension)</small>
+
* [[Documentation/Nightly/Extensions/ModelToModelDistance|ModelToModelDistance]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/ModelToModelDistance|ModelToModelDistance]] extension)</small>
−
* [[Documentation/Nightly/Extensions/MarginCalculator|Motion Simulator]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/MarginCalculator|Margin Calculator]] extension)</small>
+
* [[Documentation/Nightly/Extensions/mpReview|mpReview]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/mpReview|mpReview]] extension)</small>
−
* [[Documentation/Nightly/Extensions/MarginCalculator|Motion Simulator Double Array]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/MarginCalculator|Margin Calculator]] extension)</small>
+
* [[Documentation/Nightly/Extensions/mpReview|mpReviewPreprocessor]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/mpReview|mpReview]] extension)</small>
−
* [[Documentation/Nightly/Extensions/mpReview|mp Review]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/mpReview|mp Review]] extension)</small>
+
* [[Documentation/Nightly/Modules/MultiplyScalarVolumes|MultiplyScalarVolumes]]    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Extensions/mpReview|mp Review Preprocessor]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/mpReview|mp Review]] extension)</small>
+
* [[Documentation/Nightly/Modules/MultiVolumeExplorer|MultiVolumeExplorer]]    <small>(loadable, built-in)</small>
−
* [[Documentation/Nightly/Modules/MultiplyScalarVolumes|Multiply Scalar Volumes]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/MultiVolumeImporter|MultiVolumeImporter]]    <small>(scripted, built-in)</small>
−
* [[Documentation/Nightly/Modules/MultiVolumeExplorer|Multi Volume Explorer]]    <small>(loadable, built-in)</small>
+
* [[Documentation/Nightly/Modules/N4ITKBiasFieldCorrection|N4ITKBiasFieldCorrection]]    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Modules/MultiVolumeImporter|Multi Volume Importer]]    <small>(scripted, built-in)</small>
+
* [[Documentation/Nightly/Extensions/NeedleFinder|NeedleFinder]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/NeedleFinder|NeedleFinder]] extension)</small>
−
* [[Documentation/Nightly/Modules/N4ITKBiasFieldCorrection|N4ITKBias Field Correction]]   <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/NonGrowing|NonGrowing]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
−
* [[Documentation/Nightly/Extensions/NeedleFinder|Needle Finder]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/NeedleFinder|Needle Finder]] extension)</small>
+
* [[Documentation/Nightly/Extensions/SlicerOpenCV|OpenCV]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerOpenCV|SlicerOpenCV]] extension)</small>
−
* [[Documentation/Nightly/Modules/NonGrowing|Non Growing]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
+
* [[Documentation/Nightly/Modules/OpenIGTLinkIF|OpenIGTLinkIF]]    <small>(loadable, built-in)</small>
−
* [[Documentation/Nightly/Modules/OpenIGTLinkIF|Open IGTLink IF]]    <small>(loadable, built-in)</small>
+
* [[Documentation/Nightly/Modules/OpenIGTLinkRemote|OpenIGTLinkRemote]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
−
* [[Documentation/Nightly/Modules/OpenIGTLinkRemote|Open IGTLink Remote]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
+
* [[Documentation/Nightly/Modules/OrientScalarVolume|OrientScalarVolume]]    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Modules/OrientScalarVolume|Orient Scalar Volume]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Extensions/DCMQI|paramap2itkimage]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/DCMQI|DCMQI]] extension)</small>
−
* [http://www.chestimagingplatform.org Particles Display]    <small>(loadable, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org ParticlesDisplay]    <small>(loadable, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [[Documentation/Nightly/Modules/PathExplorer|Path Explorer]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
+
* [[Documentation/Nightly/Modules/PathExplorer|PathExplorer]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
 
* [[Documentation/Nightly/Extensions/PBNRR|PBNRR]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/PBNRR|PBNRR]] extension)</small>
 
* [[Documentation/Nightly/Extensions/PBNRR|PBNRR]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/PBNRR|PBNRR]] extension)</small>
−
* Perform Metric Test   <small>(cli, built-in)</small>
+
* PerformMetricTest   <small>(cli, built-in)</small>
−
* [http://www.chestimagingplatform.org Perform Morphological]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org PerformMorphological]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [[Documentation/Nightly/Modules/PerkEvaluator|Perk Evaluator]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/PerkTutor|Perk Tutor]] extension)</small>
+
* [[Documentation/Nightly/Modules/PerkEvaluator|PerkEvaluator]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/PerkTutor|PerkTutor]] extension)</small>
−
* [http://www.chestimagingplatform.org Perturb Particles]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org PerturbParticles]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [[Documentation/Nightly/Extensions/PET-IndiC|PETIndi C]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PET-IndiC|PET-Indi C]] extension)</small>
+
* [[Documentation/Nightly/Extensions/PET-IndiC|PETIndiC]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PET-IndiC|PET-IndiC]] extension)</small>
−
* [[Documentation/Nightly/Modules/PETStandardUptakeValueComputation|PETStandard Uptake Value Computation]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/PETLiverUptakeMeasurement|PETLiverUptakeMeasurement]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/PETLiverUptakeMeasurement|PETLiverUptakeMeasurement]] extension)</small>
−
* [[Documentation/Nightly/Extensions/LongitudinalPETCT|PETSUVImage Maker]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/LongitudinalPETCT|Longitudinal PETCT]] extension)</small>
+
* [[Documentation/Nightly/Modules/PETStandardUptakeValueComputation|PETStandardUptakeValueComputation]]    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Extensions/PETTumorSegmentation|PETTumor Segmentation]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/PETTumorSegmentation|PETTumor Segmentation]] extension)</small>
+
* [[Documentation/Nightly/Extensions/LongitudinalPETCT|PETSUVImageMaker]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/LongitudinalPETCT|LongitudinalPETCT]] extension)</small>
−
* [[Documentation/Nightly/Extensions/SlicerHeart|Philips4d Us Dicom Patcher]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerHeart|Slicer Heart]] extension)</small>
+
* [[Documentation/Nightly/Extensions/PETTumorSegmentation|PETTumorSegmentation]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/PETTumorSegmentation|PETTumorSegmentation]] extension)</small>
−
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PickAndPaint Pick And Paint]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PickAndPaint Pick And Paint Extension] extension)</small>
+
* [[Documentation/Nightly/Extensions/SlicerHeart|Philips4dUsDicomPatcher]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerHeart|SlicerHeart]] extension)</small>
−
* [[Documentation/Nightly/Extensions/SlicerIGT|Pivot Calibration]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
+
* [[Documentation/Nightly/Modules/PickAndPaint|PickAndPaint]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PickAndPaint|PickAndPaintExtension]] extension)</small>
−
* [[Documentation/Nightly/Modules/PkModeling|Pk Modeling]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/PkModeling|Pk Modeling]] extension)</small>
+
* [[Documentation/Nightly/Extensions/SlicerIGT|PivotCalibration]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
−
* [[Documentation/Nightly/Extensions/SlicerRT|Planar Image]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
+
* [[Documentation/Nightly/Modules/PkModeling|PkModeling]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/PkModeling|PkModeling]] extension)</small>
−
* [[Documentation/Nightly/Extensions/SlicerRT|plastimatch slicer bspline]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
+
* [[Documentation/Nightly/Extensions/SlicerRT|PlanarImage]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small>
−
* [[Documentation/Nightly/Extensions/SlicerRT|plastimatch slicer landwarp]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
+
* [[Documentation/Nightly/Extensions/SlicerRT|plastimatch_slicer_bspline]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small>
−
* [[Documentation/Nightly/Extensions/SlicerRT|Plastimatch Py]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
+
* [[Documentation/Nightly/Extensions/SlicerRT|plastimatch_slicer_landwarp]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small>
−
* [[Documentation/Nightly/Extensions/SlicerRT|Plm Register]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
+
* [[Documentation/Nightly/Extensions/SlicerRT|PlastimatchPy]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small>
−
* [[Documentation/Nightly/Modules/PlusRemote|Plus Remote]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
+
* [[Documentation/Nightly/Extensions/SlicerRT|PlmRegister]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small>
−
* [[Documentation/Nightly/Modules/ProbeVolumeWithModel|Probe Volume With Model]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Extensions/SlicerIGT|PlusModelCatalogBrowser]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
−
* [[Documentation/Nightly/Extensions/PerkTutor|Python Metrics Calculator]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PerkTutor|Perk Tutor]] extension)</small>
+
* [[Documentation/Nightly/Modules/PlusRemote|PlusRemote]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
−
* [[Documentation/Nightly/Extensions/Q3DC|Q3DC]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/Q3DC|Q3DC]] extension)</small>
+
* [[Documentation/Nightly/Modules/ProbeVolumeWithModel|ProbeVolumeWithModel]]    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Modules/QuadEdgeSurfaceMesher|Quad Edge Surface Mesher]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerProstate|Slicer Prostate]] extension)</small>
+
* [[Documentation/Nightly/Extensions/PerkTutor|PythonMetricsCalculator]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PerkTutor|PerkTutor]] extension)</small>
−
* [http://www.chestimagingplatform.org Quality Control]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [[Documentation/Nightly/Modules/Q3DC|Q3DC]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/Q3DC|Q3DC]] extension)</small>
−
* [[Documentation/Nightly/Modules/QuantitativeIndicesCLI|Quantitative Indices CLI]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/PET-IndiC|PET-Indi C]] extension)</small>
+
* [[Documentation/Nightly/Modules/QuadEdgeSurfaceMesher|QuadEdgeSurfaceMesher]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerProstate|SlicerProstate]] extension)</small>
−
* [[Documentation/Nightly/Modules/QuantitativeIndicesTool|Quantitative Indices Tool]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PET-IndiC|PET-Indi C]] extension)</small>
+
* [http://www.chestimagingplatform.org QualityControl]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Read Dicom Write Tags]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [[Documentation/Nightly/Modules/QuantitativeIndicesCLI|QuantitativeIndicesCLI]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/PET-IndiC|PET-IndiC]] extension)</small>
−
* [http://www.chestimagingplatform.org Read NRRDs Write VTK]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [[Documentation/Nightly/Modules/QuantitativeIndicesTool|QuantitativeIndicesTool]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PET-IndiC|PET-IndiC]] extension)</small>
−
* [http://www.chestimagingplatform.org Read Vida Write CIP]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [[Documentation/Nightly/Extensions/QuantitativeReporting|QuantitativeReporting]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/QuantitativeReporting|QuantitativeReporting]] extension)</small>
−
* [http://www.chestimagingplatform.org Read VTKWrite NRRDs]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [[Documentation/Nightly/Extensions/SlicerPathology|QuickTCGA]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerPathology|SlicerPathology]] extension)</small>
−
* [http://www.chestimagingplatform.org Read Write Image Data]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org ReadDicomWriteTags]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Read Write Region And Type Points]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org ReadNRRDsWriteVTK]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org ReadVidaWriteCIP]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org ReadVTKWriteNRRDs]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org ReadWriteImageData]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org ReadWriteRegionAndTypePoints]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 
* [[Documentation/Nightly/Modules/Reformat|Reformat]]    <small>(loadable, built-in)</small>
 
* [[Documentation/Nightly/Modules/Reformat|Reformat]]    <small>(loadable, built-in)</small>
−
* [http://www.chestimagingplatform.org Region Type]    <small>(loadable, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org RegionType]    <small>(loadable, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Region Type Locations To ROIVolume]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org RegionTypeLocationsToROIVolume]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Register CT]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org RegisterCT]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Register Label Maps]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org RegisterLabelMaps]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Register Lung Atlas]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org RegisterLungAtlas]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Remap Label Map]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org RemapLabelMap]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Remove Chest Type From Label Map Using Particles]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org RemoveChestTypeFromLabelMapUsingParticles]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Remove Particles From Particles Data Set]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org RemoveParticlesFromParticlesDataSet]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.chestimagingplatform.org Resample CT]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org ResampleCT]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [[Documentation/Nightly/Extensions/ResampleDTIlogEuclidean|Resample DTIlog Euclidean]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/ResampleDTIlogEuclidean|Resample DTIlog Euclidean]] extension)</small>
+
* [[Documentation/Nightly/Extensions/ResampleDTIlogEuclidean|ResampleDTIlogEuclidean]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/ResampleDTIlogEuclidean|ResampleDTIlogEuclidean]] extension)</small>
−
* [[Documentation/Nightly/Modules/ResampleDTIVolume|Resample DTIVolume]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/ResampleDTIVolume|ResampleDTIVolume]]    <small>(cli, built-in)</small>
−
* [http://www.chestimagingplatform.org Resample Label Map]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org ResampleLabelMap]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [[Documentation/Nightly/Modules/ResampleScalarVectorDWIVolume|Resample Scalar Vector DWIVolume]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/ResampleScalarVectorDWIVolume|ResampleScalarVectorDWIVolume]]    <small>(cli, built-in)</small>
−
* [http://www.chestimagingplatform.org Rescale Label Map]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [http://www.chestimagingplatform.org RescaleLabelMap]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [[Documentation/Nightly/Modules/RobustStatisticsSegmenter|Robust Statistics Segmenter]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/ResectionVolume|ResectionVolume]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/ResectionPlanner|ResectionPlanner]] extension)</small>
−
* [[Documentation/Nightly/Modules/SampleData|Sample Data]]    <small>(scripted, built-in)</small>
+
* [[Documentation/Nightly/Modules/ROBEXBrainExtraction|ROBEXBrainExtraction]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/ROBEXBrainExtraction|ROBEXBrainExtraction]] extension)</small>
−
* [[Documentation/Nightly/Modules/ScarVisualization|Scar Visualization]]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [[Documentation/Nightly/Modules/RobustStatisticsSegmenter|RobustStatisticsSegmenter]]    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Modules/SceneViews|Scene Views]]    <small>(loadable, built-in)</small>
+
* [[Documentation/Nightly/Modules/SampleData|SampleData]]    <small>(scripted, built-in)</small>
−
* [http://www.chestimagingplatform.org Scour Particle Data]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [https://kitwaremedical.github.io/SlicerITKUltrasoundDoc/ ScanConvertCurvilinearArray]    <small>(cli, bundled in [https://kitwaremedical.github.io/SlicerITKUltrasoundDoc/ SlicerITKUltrasound] extension)</small>
−
* [[Documentation/Nightly/Extensions/Reporting|SEG2NRRD]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/Reporting|Reporting]] extension)</small>
+
* [https://kitwaremedical.github.io/SlicerITKUltrasoundDoc/ ScanConvertPhasedArray3D]    <small>(cli, bundled in [https://kitwaremedical.github.io/SlicerITKUltrasoundDoc/ SlicerITKUltrasound] extension)</small>
−
* [[Documentation/Nightly/Modules/Segmentations|Segmentations]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
+
* [https://kitwaremedical.github.io/SlicerITKUltrasoundDoc/ ScanConvertSliceSeries]    <small>(cli, bundled in [https://kitwaremedical.github.io/SlicerITKUltrasoundDoc/ SlicerITKUltrasound] extension)</small>
−
* [[Documentation/Nightly/Modules/SegmentationSmoothing|Segmentation Smoothing]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerProstate|Slicer Prostate]] extension)</small>
+
* [[Documentation/Nightly/Modules/ScarVisualization|ScarVisualization]]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac_MRI_Toolkit] extension)</small>
−
* [[Documentation/Nightly/Modules/SegmentCAD|Segment CAD]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/OpenCAD|Open CAD]] extension)</small>
+
* [[Documentation/Nightly/Extensions/ScatteredTransform|ScatteredTransform]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/ScatteredTransform|ScatteredTransform]] extension)</small>
−
* [[Documentation/Nightly/Modules/SegmentComparison|Segment Comparison]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
+
* [[Documentation/Nightly/Modules/SceneViews|SceneViews]]    <small>(loadable, built-in)</small>
−
* [http://www.chestimagingplatform.org Segment Lung Lobes]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [[Documentation/Nightly/Modules/ScreenCapture|ScreenCapture]]    <small>(scripted, built-in)</small>
−
* [[Documentation/Nightly/Modules/SegmentMorphology|Segment Morphology]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
+
* [[Documentation/Nightly/Modules/SEG2NRRD|SEG2NRRD]]   <small>(cli)</small>
−
* [[Documentation/Nightly/Extensions/Sequences|Sequence Browser]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/Sequences|Sequences]] extension)</small>
+
* [[Documentation/Nightly/Extensions/DCMQI|segimage2itkimage]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/DCMQI|DCMQI]] extension)</small>
 +
* [[Documentation/Nightly/Modules/Segmentations|Segmentations]]    <small>(loadable, built-in)</small>
 +
* [[Documentation/Nightly/Modules/SegmentationSmoothing|SegmentationSmoothing]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerProstate|SlicerProstate]] extension)</small>
 +
* [[Documentation/Nightly/Modules/SegmentCAD|SegmentCAD]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/OpenCAD|OpenCAD]] extension)</small>
 +
* [[Documentation/Nightly/Modules/SegmentComparison|SegmentComparison]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small>
 +
* [[Documentation/Nightly/Modules/SegmentEditor|SegmentEditor]]    <small>(scripted, built-in)</small>
 +
* [https://github.com/lassoan/SlicerSegmentEditorExtraEffects SegmentEditorFastMarching]    <small>(scripted, bundled in [https://github.com/lassoan/SlicerSegmentEditorExtraEffects SegmentEditorExtraEffects] extension)</small>
 +
* [https://github.com/lassoan/SlicerSegmentEditorExtraEffects SegmentEditorFloodFilling]    <small>(scripted, bundled in [https://github.com/lassoan/SlicerSegmentEditorExtraEffects SegmentEditorExtraEffects] extension)</small>
 +
* [https://github.com/lassoan/SlicerSegmentEditorExtraEffects SegmentEditorWatershed]    <small>(scripted, bundled in [https://github.com/lassoan/SlicerSegmentEditorExtraEffects SegmentEditorExtraEffects] extension)</small>
 +
* [http://www.chestimagingplatform.org SegmentLungAirways]   <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org SegmentLungLobes]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [[Documentation/Nightly/Modules/SegmentMorphology|SegmentMorphology]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small>
 +
* SegmentStatistics    <small>(scripted, built-in)</small>
 +
* [[Documentation/Nightly/Extensions/Sequences|SequenceBrowser]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/Sequences|Sequences]] extension)</small>
 
* [[Documentation/Nightly/Extensions/Sequences|Sequences]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/Sequences|Sequences]] extension)</small>
 
* [[Documentation/Nightly/Extensions/Sequences|Sequences]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/Sequences|Sequences]] extension)</small>
−
* [[Documentation/Nightly/Modules/SimpleFilters|Simple Filters]]    <small>(scripted, built-in)</small>
+
* [[Documentation/Nightly/Modules/ShapeQuantifier|ShapeQuantifier]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/ShapeQuantifier|ShapeQuantifier]] extension)</small>
−
* [[Documentation/Nightly/Modules/SimpleRegionGrowingSegmentation|Simple Region Growing Segmentation]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Extensions/ShapeQuantifier|ShapeQuantifierCore]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/ShapeQuantifier|ShapeQuantifier]] extension)</small>
−
* [[Documentation/Nightly/Modules/SkullStripper|Skull Stripper]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SkullStripper|Skull Stripper]] extension)</small>
+
* [[Documentation/Nightly/Extensions/SlicerPathology|ShortCutCore]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerPathology|SlicerPathology]] extension)</small>
−
* [[Documentation/Nightly/Modules/SlicerToKiwiExporter|Slicer To Kiwi Exporter]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerToKiwiExporter|Slicer To Kiwi Exporter]] extension)</small>
+
* [[Documentation/Nightly/Modules/SimpleFilters|SimpleFilters]]    <small>(scripted, built-in)</small>
−
* [[Documentation/Nightly/Extensions/IASEM|Spacing Aware Curvature Diffusion]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small>
+
* [[Documentation/Nightly/Modules/SimpleRegionGrowingSegmentation|SimpleRegionGrowingSegmentation]]    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Modules/SpinalCurvatureMeasurement|Spinal Curvature Measurement]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/Scoliosis|Scoliosis]] extension)</small>
+
* [[Documentation/Nightly/Modules/SkullStripper|SkullStripper]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SkullStripper|SkullStripper]] extension)</small>
−
* [http://www.chestimagingplatform.org Split Left Lung Right Lung]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [[Documentation/Nightly/Modules/SlicerAstroDataProbe|SlicerAstroDataProbe]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
−
* [[Documentation/Nightly/Modules/SubjectHierarchy|Subject Hierarchy]]    <small>(loadable, built-in)</small>
+
* [[Documentation/Nightly/Extensions/SlicerPathology|SlicerPathology]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerPathology|SlicerPathology]] extension)</small>
−
* [[Documentation/Nightly/Modules/SubtractScalarVolumes|Subtract Scalar Volumes]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/SlicerToKiwiExporter|SlicerToKiwiExporter]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerToKiwiExporter|SlicerToKiwiExporter]] extension)</small>
−
* [[Documentation/Nightly/Modules/SurfaceRegistration|Surface Registration]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
+
* [[Documentation/Nightly/Extensions/SliceTracker|SliceTracker]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SliceTracker|SliceTracker]] extension)</small>
−
* [[Documentation/Nightly/Modules/SurfaceToolbox|Surface Toolbox]]    <small>(scripted, built-in)</small>
+
* [[Documentation/Nightly/Extensions/SliceTracker|SliceTrackerRegistration]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SliceTracker|SliceTracker]] extension)</small>
−
* [[Documentation/Nightly/Modules/SUVFactorCalculator|SUVFactor Calculator]]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] extension)</small>
+
* [[Documentation/Nightly/Extensions/SliceTracker|SliceTrackerZFrameRegistration]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SliceTracker|SliceTracker]] extension)</small>
−
* [[Documentation/Nightly/Modules/SwissSkullStripper|Swiss Skull Stripper]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SwissSkullStripper|Swiss Skull Stripper]] extension)</small>
+
* [[Documentation/Nightly/Modules/SobolevSegmenter|SobolevSegmenter]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SobolevSegmenter|SobolevSegmenter]] extension)</small>
−
* [[Documentation/Nightly/Extensions/MarginCalculator|Synthetic RTDose]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/MarginCalculator|Margin Calculator]] extension)</small>
+
* [[Documentation/Nightly/Extensions/IASEM|SpacingAwareCurvatureDiffusion]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small>
 +
* [[Documentation/Nightly/Modules/SpinalCurvatureMeasurement|SpinalCurvatureMeasurement]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/Scoliosis|Scoliosis]] extension)</small>
 +
* [http://www.chestimagingplatform.org SplitLeftLungRightLung]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [[Documentation/Nightly/Modules/SubjectHierarchy|SubjectHierarchy]]    <small>(loadable, built-in)</small>
 +
* [[Documentation/Nightly/Modules/SubtractScalarVolumes|SubtractScalarVolumes]]    <small>(cli, built-in)</small>
 +
* [[Documentation/Nightly/Modules/SurfaceRegistration|SurfaceRegistration]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
 +
* [[Documentation/Nightly/Modules/SurfaceToolbox|SurfaceToolbox]]    <small>(scripted, built-in)</small>
 +
* [[Documentation/Nightly/Modules/SUVFactorCalculator|SUVFactorCalculator]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/PETDICOM|PETDICOMExtension]] extension)</small>
 +
* [[Documentation/Nightly/Modules/SwissSkullStripper|SwissSkullStripper]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SwissSkullStripper|SwissSkullStripper]] extension)</small>
 +
* [[Documentation/Nightly/Extensions/MarginCalculator|SyntheticRTDose]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/MarginCalculator|MarginCalculator]] extension)</small>
 
* [[Documentation/Nightly/Modules/T1Mapping|T1Mapping]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/T1Mapping|T1Mapping]] extension)</small>
 
* [[Documentation/Nightly/Modules/T1Mapping|T1Mapping]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/T1Mapping|T1Mapping]] extension)</small>
 
* [[Documentation/Nightly/Modules/Tables|Tables]]    <small>(loadable, built-in)</small>
 
* [[Documentation/Nightly/Modules/Tables|Tables]]    <small>(loadable, built-in)</small>
 
* [[Documentation/Nightly/Extensions/TCIABrowser|TCIABrowser]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/TCIABrowser|TCIABrowser]] extension)</small>
 
* [[Documentation/Nightly/Extensions/TCIABrowser|TCIABrowser]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/TCIABrowser|TCIABrowser]] extension)</small>
−
* [[Documentation/Nightly/Modules/ThresholdScalarVolume|Threshold Scalar Volume]]    <small>(cli, built-in)</small>
+
* Terminologies    <small>(loadable, built-in)</small>
−
* [[Documentation/Nightly/Modules/TrackerStabilizer|Tracker Stabilizer]]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/TrackerStabilizer Tracker Stabilizer] extension)</small>
+
* [[Documentation/Nightly/Extensions/SlicerIGT|TextureModel]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
−
* [[Documentation/Nightly/Modules/TractographyDisplay|Tractography Display]]    <small>(loadable, built-in)</small>
+
* [[Documentation/Nightly/Modules/ThresholdScalarVolume|ThresholdScalarVolume]]    <small>(cli, built-in)</small>
−
* Tractography Interactive Seeding   <small>(loadable, built-in)</small>
+
* [[Documentation/Nightly/Extensions/DCMQI|tid1500reader]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/DCMQI|DCMQI]] extension)</small>
−
* [[Documentation/Nightly/Modules/TractographyLabelMapSeeding|Tractography Label Map Seeding]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Extensions/DCMQI|tid1500writer]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/DCMQI|DCMQI]] extension)</small>
−
* [http://www.chestimagingplatform.org Transfer Field Data To From Point Data]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [[Documentation/Nightly/Modules/TrackerStabilizer|TrackerStabilizer]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/TrackerStabilizer|TrackerStabilizer]] extension)</small>
−
* [http://www.chestimagingplatform.org Transfer Region And Type Indices To From Points]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small>
+
* [[Documentation/Nightly/Modules/TractographyDisplay|TractographyDisplay]]   <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small>
−
* [[Documentation/Nightly/Extensions/SlicerIGT|Transform Fusion]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
+
* [[Documentation/Nightly/Modules/TractographyInteractiveSeeding|TractographyInteractiveSeeding]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small>
−
* [[Documentation/Nightly/Modules/TransformRecorder|Transform Recorder]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/PerkTutor|Perk Tutor]] extension)</small>
+
* [[Documentation/Nightly/Modules/TractographyLabelMapSeeding|TractographyLabelMapSeeding]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small>
 +
* [http://www.chestimagingplatform.org TransferRegionAndTypeIndicesToFromPoints]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [[Documentation/Nightly/Extensions/SlicerIGT|TransformFusion]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
 +
* [[Documentation/Nightly/Modules/TransformRecorder|TransformRecorder]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/PerkTutor|PerkTutor]] extension)</small>
 
* [[Documentation/Nightly/Modules/Transforms|Transforms]]    <small>(loadable, built-in)</small>
 
* [[Documentation/Nightly/Modules/Transforms|Transforms]]    <small>(loadable, built-in)</small>
 
* [[Documentation/Nightly/Modules/UKFTractography|UKFTractography]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/UKFTractography|UKFTractography]] extension)</small>
 
* [[Documentation/Nightly/Modules/UKFTractography|UKFTractography]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/UKFTractography|UKFTractography]] extension)</small>
−
* [[Documentation/Nightly/Extensions/SlicerIGT|Ultrasound Snapshots]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
+
* [[Documentation/Nightly/Extensions/SlicerIGT|UltrasoundSnapshots]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
 
* [[Documentation/Nightly/Modules/Units|Units]]    <small>(loadable, built-in)</small>
 
* [[Documentation/Nightly/Modules/Units|Units]]    <small>(loadable, built-in)</small>
−
* [[Documentation/Nightly/Extensions/SlicerHeart|Valve View]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerHeart|Slicer Heart]] extension)</small>
+
* [[Documentation/Nightly/Extensions/SlicerHeart|ValveView]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerHeart|SlicerHeart]] extension)</small>
−
* VBRAINSDemon Warp   <small>(cli, built-in)</small>
+
* VBRAINSDemonWarp   <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Modules/VectorToScalarVolume|Vector To Scalar Volume]]    <small>(scripted, built-in)</small>
+
* [[Documentation/Nightly/Modules/VectorToScalarVolume|VectorToScalarVolume]]    <small>(scripted, built-in)</small>
−
* [http://slicer.vmtk.org/ Vesselness Filtering]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
+
* [http://slicer.vmtk.org/ VesselnessFiltering]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
−
* [[Documentation/Nightly/Extensions/SlicerRT|Vff File Reader]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
+
* [[Documentation/Nightly/Extensions/SlicerRT|VffFileReader]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small>
−
* [[Documentation/Nightly/Modules/ViewControllers|View Controllers]]    <small>(loadable, built-in)</small>
+
* [[Documentation/Nightly/Modules/ViewControllers|ViewControllers]]    <small>(loadable, built-in)</small>
−
* [https://github.com/SlicerIGT/LumpNav Viewpoint]    <small>(scripted, bundled in [https://github.com/SlicerIGT/LumpNav Lump Nav] extension)</small>
+
* [[Documentation/Nightly/Extensions/SlicerIGT|Viewpoint]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
−
* [[Documentation/Nightly/Extensions/VolumeClip|Volume Clip With Model]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/VolumeClip|Volume Clip]] extension)</small>
+
* [[Documentation/Nightly/Modules/VirtualReality|VirtualReality]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerVirtualReality|SlicerVirtualReality]] extension)</small>
−
* [[Documentation/Nightly/Extensions/VolumeClip|Volume Clip With Roi]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/VolumeClip|Volume Clip]] extension)</small>
+
* [[Documentation/Nightly/Extensions/SliceTracker|VolumeClipToLabel]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SliceTracker|SliceTracker]] extension)</small>
−
* [[Documentation/Nightly/Modules/VolumeRendering|Volume Rendering]]    <small>(loadable, built-in)</small>
+
* [[Documentation/Nightly/Extensions/VolumeClip|VolumeClipWithModel]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/VolumeClip|VolumeClip]] extension)</small>
−
* [[Documentation/Nightly/Modules/VolumeResliceDriver|Volume Reslice Driver]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
+
* [[Documentation/Nightly/Extensions/VolumeClip|VolumeClipWithRoi]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/VolumeClip|VolumeClip]] extension)</small>
 +
* [[Documentation/Nightly/Modules/VolumeRendering|VolumeRendering]]    <small>(loadable, built-in)</small>
 +
* [[Documentation/Nightly/Modules/VolumeResliceDriver|VolumeResliceDriver]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
 
* [[Documentation/Nightly/Modules/Volumes|Volumes]]    <small>(loadable, built-in)</small>
 
* [[Documentation/Nightly/Modules/Volumes|Volumes]]    <small>(loadable, built-in)</small>
−
* [[Documentation/Nightly/Modules/VotingBinaryHoleFillingImageFilter|Voting Binary Hole Filling Image Filter]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/VotingBinaryHoleFillingImageFilter|VotingBinaryHoleFillingImageFilter]]    <small>(cli, built-in)</small>
 +
* [[Documentation/Nightly/Extensions/SlicerDMRI|VTK_to_DICOMTract]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small>
 
* [https://github.com/Tomnl/Slicer-Wasp Wasp]    <small>(scripted, bundled in [https://github.com/Tomnl/Slicer-Wasp Wasp] extension)</small>
 
* [https://github.com/Tomnl/Slicer-Wasp Wasp]    <small>(scripted, bundled in [https://github.com/Tomnl/Slicer-Wasp Wasp] extension)</small>
−
* [[Documentation/Nightly/Modules/Watchdog|Watchdog]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
+
* [[Documentation/Nightly/Modules/Watchdog|Watchdog]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
 
* [[Documentation/Nightly/Modules/Welcome|Welcome]]    <small>(loadable, built-in)</small>
 
* [[Documentation/Nightly/Modules/Welcome|Welcome]]    <small>(loadable, built-in)</small>
−
* [[Documentation/Nightly/Extensions/WindowLevelEffect|Window Level Effect]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/WindowLevelEffect|Window Level Effect]] extension)</small>
+
* [[Documentation/Nightly/Extensions/WindowLevelEffect|WindowLevelEffect]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/WindowLevelEffect|WindowLevelEffect]] extension)</small>
−
* [[Documentation/Nightly/Modules/WorkflowSegmentation|Workflow Segmentation]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/PerkTutor|Perk Tutor]] extension)</small>
+
* [[Documentation/Nightly/Modules/WorkflowSegmentation|WorkflowSegmentation]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/PerkTutor|PerkTutor]] extension)</small>
 +
* [[Documentation/Nightly/Extensions/XNATSlicer|XnatSlicer]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/XNATSlicer|XNATSlicer]] extension)</small>
 +
* [[Documentation/Nightly/Extensions/SliceTracker|ZFrameCalibration]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SliceTracker|SliceTracker]] extension)</small>

Latest revision as of 18:02, 13 November 2022

Home < Documentation < Nightly < ModuleExtensionListing


Modules by category

46 categories:

Astronomy

Cardiac

Cardiac MRI Toolkit

Chest Imaging Platform

Toolkit

Particles

Processing

Quantification

Registration

Segmentation

Utils

CIP

Converters

Developer Tools

DICOM Plugins

  • DICOMParametricMapPlugin
  • DicomUltrasoundPlugin
  • DICOMSegmentationPlugin
  • DICOMSlicerDataBundlePlugin
  • DICOMTID1500Plugin
  • DICOMPETSUVPlugin
  • DICOMScalarVolumePlugin
  • DICOMDiffusionVolumePlugin
  • DICOMLongitudinalPETCTPlugin
  • DicomSroImportPlugin
  • DICOMRWVMPlugin
  • DicomRtImportExportPlugin
  • MultiVolumeImporterPlugin

Editor Extensions

Matlab

Segment Editor Extensions

Utils

Diffusion

Diffusion Data Conversion

  • DWIConvert (cli, built-in)

Diffusion Tensor Images

Diffusion Weighted Images

  • BRAINSDWICleanup (cli, built-in)

Import and Export

Process

Quantify

Tractography

Region-based

Utilities

Editor Effects

EditorEffect

Endoscopy

Examples

Exporter

Filter

  • IslandRemoval (cli, built-in)

Filtering

Arithmetic

Denoising

Morphology

IGT

Informatics

Converters

Legacy

Converters

Filtering

Registration

Work in Progress

Diffusion Tensor

Test
  • DiffusionTensorTest (cli, built-in)

Libraries

Machine Learning

Margin Calculator

Mesh Generation

MeshGeneration

Microscopy

MultiVolume Support

Pathology

Perk Tutor

Plastimatch

Registration

Utilities

Quantification

ChangeQuantification

Radiology

Radiotherapy

Registration

CMF Registration

Voxelbase Registration

Label Registration

Specialized

Segmentation

Specialized

Sequences

Slicelets

SlicerProstate

Surface Models

TestCases

  • SEGExporterSelfTest

Testing

  • CLI4Test
  • ThresholdThreadingTest
  • ScoliosisMonitoring (scripted, bundled in Scoliosis extension)
  • SlicerMRBSaveRestoreCheckPathsTest
  • CLIROITest (cli, built-in)
  • PerformanceTests
  • SlicerMRBMultipleSaveRestoreTest
  • SlicerMRBTest
  • SEGExporterSelfTest
  • SelfTests
  • SlicerMRBMultipleSaveRestoreLoopTest

IGT Tests

  • BreachWarningSelfTest
  • WatchdogSelfTest

SlicerRT Tests

TestCases

  • AtlasTests
  • AddStorableDataAfterSceneViewTest
  • test_tractography_display
  • SlicerTransformInteractionTest1
  • RSNAQuantTutorial
  • NeurosurgicalPlanningTutorialMarkupsSelfTest
  • ChangeTrackerSelfTest
  • FiducialLayoutSwitchBug1914
  • GraphCutSegmentSelfTest
  • SlicerBoundsTest
  • UtilTest
  • Charting (scripted, built-in)
  • CardiacAgatstonMeasures (scripted, bundled in CardiacAgatstonMeasures extension)
  • fiber_visibility_crash2438
  • RSNAVisTutorial
  • JRC2013Vis
  • AddManyMarkupsFiducialTest
  • CropVolumeSelfTest
  • SliceLinkLogic (scripted, built-in)
  • VolumeRenderingSceneClose (scripted, built-in)
  • slicerCloseCrashBug2590
  • CLIEventTest
  • NsgPlanTracto (scripted, bundled in SlicerDMRI extension)
  • MarkupsWidgetsSelfTest
  • TablesSelfTest
  • SlicerOrientationSelectorTest
  • MarkupsInViewsSelfTest
  • TwoCLIsInParallelTest
  • SubjectHierarchyCorePluginsSelfTest
  • SubjectHierarchyGenericSelfTest
  • ScenePerformance (scripted, built-in)
  • MarkupsInCompareViewersSelfTest
  • sceneImport2428
  • RSNA2012ProstateDemo
  • DTINotReproducibleIssue3977
  • TwoCLIsInARowTest
  • ColorsScalarBarSelfTest
  • BRAINSFitRigidRegistrationCrashIssue4139
  • Slicer4Minute (scripted, built-in)
  • ViewControllersSliceInterpolationBug1926

Ultrasound

Uncategorized

Utilities

  • ScreenCapture (scripted, built-in)
  • DataStore (loadable, built-in)
  • DICOMPatcher (scripted, built-in)
  • BRAINSStripRotation (cli, built-in)
  • EMSegmentTransformToNewFormat (cli, built-in)

BRAINS

  • BRAINSTransformConvert (cli, built-in)

Vascular Modeling Toolkit

Virtual Reality

Web System Tools

Wizards

XNATSlicer

Modules by name

367 modules:

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