Difference between revisions of "Announcements:Slicer3.6"

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__NOTOC__
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<noinclude>{{documentation/versioncheck}}</noinclude>
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  [[Documentation-3.6|Back to Documentation 3.6]]
 
  [[Documentation-3.6|Back to Documentation 3.6]]
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[[image:Slicer3-6Announcement-v2.png|3.6 Icon large]]
  
 
=Introduction=  
 
=Introduction=  
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The main [http://www.slicer.org slicer.org] pages provide a guided tour to the application, training materials, and the development community.  New users should start there because we try to keep the pages organized and up to date.
 
The main [http://www.slicer.org slicer.org] pages provide a guided tour to the application, training materials, and the development community.  New users should start there because we try to keep the pages organized and up to date.
  
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==Highlights==
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<gallery caption="Slicer v3.6 - New and Improved Feature Highlights" widths="250px" heights="150px" perrow="4">
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=Our Philosophy=
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Image:MRI_Bias_Field_Correction_Slicer3.png|[[Modules:MRIBiasFieldCorrection-Documentation-3.6|MRIBiasFieldCorrection]] corrects for the intensity inhomogeneity in 3D MRI images.  
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Slicer is  a community platform created for the purpose of subject specific image analysis and visualization.
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* Multi-modality imaging including, MRI, CT, US, nuclear medicine, and microscopy
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* Multi organ from head to toe
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* Bidirectional interface for devices
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* Expandable and interfaced to multiple toolkits
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There is no restriction on use, but permissions are responsibility of users. For details on the license see [http://www.slicer.org/cgi-bin/License/SlicerLicenseForm.pl here]
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=Slicer Highlights=
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<gallery caption="Slicer v3.6 - New and Improved Modules" widths="250px" heights="150px" perrow="3">
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Image:Slicer3.6-Editor-2010-05-06.png|The [[Modules:Editor-Documentation-3.6|Interactive Editor]] can be used to create and edit label maps for quantitative analysis and surface model generation (Steve Pieper)
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Image:VolumeRenderingICPE.png| [[Modules:VolumeRendering-Documentation-3.6|Volume Rendering]] (Yanling Liu, Julien Finet, Lisa Avila)
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Image:Slicer-ColorGUI-3.6.jpg| [[Modules:Colors-Documentation-3.6|Colors]] (Nicole Aucoin)
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Image:Slicer3.6MeasurementsRulersModel.jpg| [[Modules:Measurements-Documentation-3.6 |Measurements (rulers and angles)]] (Nicole Aucoin)
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Image:SlicerFiducialsGlyphs-3.4.jpg| [[Modules:Fiducials-Documentation-3.6|Fiducials]] (Nicole Aucoin)
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Image:EMSegment-Simple.png|[[Modules:EMSegmenter-3.6|EM Segmenter]] (Kilian Pohl)
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Image:Fastmarching-result-adjusted.jpg| [[Modules:FastMarchingSegmentation-Documentation-3.6|Fast Marching segmentation]] (Andriy Fedorov)
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Image:RSSkidneyL.png| [[Modules:RobustStatisticsSeg-Documentation-3.6|Robust Statistical Segmentation]] (Yi Gao)
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Image:Fiducial registration before.jpg|NEW: [[Modules:RegisterImagesMultiRes-Documentation-3.6|Multiresolution Affine registration]] (Casey Goodlett)
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Image:B-spline-reg-detail.png|Improved: [[Modules:RegisterImages-Documentation-3.6|Expert Automated Registration]] (Casey Goodlett)
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Image:Fiducial_registration_before.jpg|NEW: [[Modules:TransformFromFiducials-Documentation-3.6|Fiducial Registration]] (Casey Goodlett)
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Image:Registration_BRAINSfit.png|NEW: [[Modules:BRAINSFit |BRAINSFit Registration]] (Hans Johnson)
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Image:Registration_BRAINSdemonwarp.png|NEW: [[Modules:BRAINSDemonWarp|BRAINSDemonWarp]] (Hans Johnson)
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Image:BRAINSResample.png|NEW: [[Modules:BRAINSResample|BRAINSResample]] (Hans J. Johnson)
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Image:BRAINSROIAuto.png|NEW: [[Modules:BRAINSROIAuto|BRAINSROIAuto]] (Hans J. Johnson)
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Image:Plastimatch_icon.png|NEW: [[Modules:Plastimatch |Plastimatch non-rigid registration]] (Greg Sharp)
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Image:PETCTFusion.png| [[Modules:PETCTFusion-Documentation-3.6 |PETCTFusion]] (Wendy Plesniak)
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Image:| [[Modules:CollectFiducials-Documentation-3.6 |Collect Patient Fiducials]] (Andrew Wiles)
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Image:| [[Modules:IGTToolSelector-Documentation-3.6 |IGT Tool Selector]] (Andrew Wiles)
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Image:FourDImage Screenshot1.png| [[Modules:FourDImage-Documentation-3.6|4D Image Viewer]] (Junichi Tokuda)
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Image:MRI_Bias_Field_Correction_Slicer3_close_up.png|[[Modules:MRIBiasFieldCorrection-Documentation-3.6|MRIBiasFieldCorrection]] correction of MRI intensity inhomogeneity i.e. bias field (Sylvain Jaume)
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Image:N4 prostate bias ax.png| [[Modules:N4ITKBiasFieldCorrection-Documentation-3.6|N4 Bias Field Correction]] (Andriy Fedorov)
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Image:Surface H c.png| [[Modules:MeshContourSegmentation-Documentation-3.6|Mesh Contour Segmentation]] (Peter Karasev)
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Image:ModelTransform.PNG| [[Modules:ModelTransform-Documentation-3.6|Model Transform]] (Alex Yarmarkovich)
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Image:BrainWebImageTransformed.jpg| [[Modules:ResampleScalarVectorDWIVolume-Documentation-3.6|Resample Scalar/Vector/DWI Volume]] (Francois Budin)
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Image:ExtractSubvolume3.png| [[Modules:CropVolume-Documentation-3.6|Crop Volume]] (Andriy Fedorov)
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Image:Endoscopy-slicer3.6.png| [[Modules:Endoscopy-Documentation-3.6|Virtual Endoscopy]] (Steve Pieper)
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Image:ChangeTracker_Analysis-3.4.png| [[Modules:ChangeTracker-Documentation-3.6|ChangeTracker]] (Andriy Fedorov)
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Image:Slicer3_OpenIGTLinkIF__VolumeReslice2.png| [[Modules:OpenIGTLinkIF-Documentation-3.6|OpenIGTLinkIF]] (Junichi Tokuda)
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Image:ProstateNav-3.6_Transrectal.png| [[Modules:ProstateNav-Documentation-3.6|ProstateNav]] (Andras Lasso, Junichi Tokuda)
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Image:slicer3.6_neuronav_OR.jpeg| [[Modules:NeuroNav-Documentation-3.6|NeuroNav]] (Haiying Liu)
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Image:IGTToolSelectorPointer.png  |[[Modules:IGTToolSelector-Documentation-3.6|IGT tool selector]] (A. Wiles)
 
</gallery>
 
</gallery>
  
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'''List of Modules added or significantly revised since the 3.4 release'''
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=Slicer Extensions=
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* [[Modules:Editor-Documentation-3.6|Interactive Editor]]
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<gallery caption="Slicer v3.6 - Extensions" widths="250px" heights="150px" perrow="3">
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* [[Modules:VolumeRendering-Documentation-3.6|Volume Rendering]]
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Image:Plastimatch_dicomrt_dose.png|The [[Modules:PlastimatchDICOMRT| Plastimatch DICOM RT reader]] allows import and conversion of data in that format. (Greg Sharp)
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* [[Modules:Colors-Documentation-3.6|Colors]] (Nicole Aucoin)
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Image:ABC out3d.png|The [[Modules:ABC-Documentation-3.5|ABC Segmenter]] is based on ITK EM technology.
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* [[Modules:FourDImage-Documentation-3.6|4D Image Viewer]] (Junichi Tokuda)
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Image:FCMResultLabels-3-6.png|[[Modules:FuzzySegmentationModule|Fuzzy segmentation]]
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* [[Modules:FastMarchingSegmentation-Documentation-3.6|Fast Marching segmentation]] (Andriy Fedorov)
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Image:HammerAverage-3-6.png|[[Modules:HammerRegistration|Hammer Registration]] can be used to build statistical brain atlases
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* [[Modules:MeshContourSegmentation-Documentation-3.6|Mesh Contour Segmentation]] (Peter Karasev)
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Image:Plastimatch image 2.png|[[Modules:Plastimatch|Plastimatch non-rigid registration]] (Greg Sharp)
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* [[Modules:CropVolume-Documentation-3.6|Crop Volume]] (Andriy Fedorov)
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Image:Corticalthickness.png|[[Modules:ARCTIC-Documentation-3.6|Arctic wizard]] (Automatic Regional Cortical ThICkness)
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* [[Modules:Measurements-Documentation-3.6 |Measurements (rulers and angles)]] (Nicole Aucoin)
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Image:LesionsWithVentricles.png|[[Modules:LesionSegmentationApplications-Documentation-3.6| Lupus white matter lesions segmentation]] (Jeremy Bockholt, Mark Scully)
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* [[Modules:RegisterImagesMultiRes-Documentation-3.6|Affine registration]] (Casey Goodlett)
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Image:Shot2.png|[[Modules:EMDTIClustering-Documentation-3.6|EM DTI clustering]] (Mahnaz Maddah)
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* [[Modules:CollectFiducials-Documentation-3.6 |Collect Patient Fiducials]] (Andrew Wiles)
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Image:RicianTensorCorrectionImage.png|[[Modules:RicianNoiseFilter|Rician Noise Filter]] for noise removal in DWI data
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* [[Modules:IGTToolSelector-Documentation-3.6 |IGT Tool Selector]] (Andrew Wiles)
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Image:FourDAnalysisModuleScreenShot-3.5.png|The [[Modules:FourDAnalysis-Documentation-3.6|FourD Analysis module]] was designed for time series analysis (Junichi Takuda)
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* [[Modules:Fiducials-Documentation-3.6|Fiducials]] (Nicole Aucoin)
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Image:Avf 3d voronoi big.png|[[Modules:VMTKCenterlines|Centerline extraction using Voronoi diagrams]] (Luca Antiga, Daniel Haehn)  
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* [[Modules:PETCTFusion-Documentation-3.6 |PETCTFusion]] (Wendy Plesniak)
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Image:Labeldiameterestimation1.png|[[Modules:LabelDiameterEstimation-Documentation-3.6|Label diameter estimation]] (Andriy Fedorov)  
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* [[Modules:MRIBiasFieldCorrection-Documentation-3.6|MRI Bias Field Correction]] (Sylvain Jaume)
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</gallery>
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* [[Modules:N4ITKBiasFieldCorrection-Documentation-3.6|N4 Bias Field Correction]] (Andriy Fedorov)
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* [[Modules:RobustStatisticsSeg-Documentation-3.6|Robust Statistical Segmentation]] (Yi Gao)
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Checklist for the [[Checklist-3.6-Release|3.6 release]]
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* [[Modules:ModelTransform-Documentation-3.6|Model Transform]] (Alex Yarmarkovich)
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* [[Modules:ResampleScalarVectorDWIVolume-Documentation-3.6|Resample Scalar/Vector/DWI Volume]] (Francois Budin)
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= Other Improvements,  Additions & Documentation =
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<gallery caption="" widths="250px" heights="150px" perrow="3">
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image:3.6 Default LUT.png| [[Slicer3:2010_GenericAnatomyColors|New default LUT]] (Michael Halle)
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Image:RegPortal_Icon.png|[[Slicer3:Registration|Registration Portal Page: overview of avail. tools & modules]] (Dominik Meier)
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Image:Resampling_DecisionMatrix.png|[[Registration:Resampling|Resampling Tool Feature Matrix]] (Dominik Meier)
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Image:RegLib_Banner.png|[http://na-mic.org/Wiki/index.php/Projects:RegistrationDocumentation:UseCaseInventory Slicer Registration Case Library] (Dominik Meier)
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Image:RegistrationWelcome_icon.png|[[Slicer3:Registration|Registration Welcome Module]] gives an overview of avail. registration modules
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Image:SegmentationWelcome_icon.png|[[Modules:SegmentationOverview3.6|Segmentation Welcome Module]] gives an overview of avail. segmentation modules
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Image:DiffusionWelcome_icon.png|[[Modules:DiffusionMRIWelcome-Documentation-3.6|Diffusion Welcome Module]] gives an overview of avail. DWI processing modules
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Image:ITK_logo.png|[http://www.kitware.com/news/home/browse/272 ITK upgrades] provided performance improvements in all registration modules and many other modules.
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</gallery>

Latest revision as of 21:14, 19 January 2022

Home < Announcements:Slicer3.6


For the latest Slicer documentation, visit the read-the-docs. 


Back to Documentation 3.6

3.6 Icon large

Introduction

The community of Slicer developers is proud to announce the release of Slicer 3.6.

  • Click here to download different versions of Slicer3 and find pointers to the source code, mailing lists and bug tracker. *Please note that Slicer continues to be a research package and is not intended for clinical use. Testing of functionality is an ongoing activity with high priority, however, some features of Slicer3 are not fully tested.
  • The Slicer Training page provides a series of courses for learning how to use Slicer3. The portfolio contains self-guided presentation and sample data sets

The main slicer.org pages provide a guided tour to the application, training materials, and the development community. New users should start there because we try to keep the pages organized and up to date.


Our Philosophy

Slicer is a community platform created for the purpose of subject specific image analysis and visualization.

  • Multi-modality imaging including, MRI, CT, US, nuclear medicine, and microscopy
  • Multi organ from head to toe
  • Bidirectional interface for devices
  • Expandable and interfaced to multiple toolkits

There is no restriction on use, but permissions are responsibility of users. For details on the license see here

Slicer Highlights

Slicer Extensions

Checklist for the 3.6 release

Other Improvements, Additions & Documentation

Retrieved from "https://www.slicer.org/w/index.php?title=Announcements:Slicer3.6&oldid=63928"