Difference between revisions of "Documentation/Nightly/ModuleExtensionListing"
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<noinclude>{{:Documentation/Nightly/ModuleExtensionListing/TOC}}</noinclude> | <noinclude>{{:Documentation/Nightly/ModuleExtensionListing/TOC}}</noinclude> | ||
= Modules by category = | = Modules by category = | ||
| − | + | 46 categories: | |
| + | * [[#Modules_by_category_Astronomy|Astronomy]] | ||
* [[#Modules_by_category_Cardiac|Cardiac]] | * [[#Modules_by_category_Cardiac|Cardiac]] | ||
* [[#Modules_by_category_Cardiac_MRI_Toolkit|Cardiac MRI Toolkit]] | * [[#Modules_by_category_Cardiac_MRI_Toolkit|Cardiac MRI Toolkit]] | ||
* [[#Modules_by_category_Chest_Imaging_Platform|Chest Imaging Platform]] | * [[#Modules_by_category_Chest_Imaging_Platform|Chest Imaging Platform]] | ||
| − | |||
** [[#Modules_by_category_Chest_Imaging_Platform_Toolkit|Toolkit]] | ** [[#Modules_by_category_Chest_Imaging_Platform_Toolkit|Toolkit]] | ||
*** [[#Modules_by_category_Toolkit_Particles|Particles]] | *** [[#Modules_by_category_Toolkit_Particles|Particles]] | ||
| Line 20: | Line 20: | ||
** [[#Modules_by_category_Developer_Tools_Editor_Extensions|Editor Extensions]] | ** [[#Modules_by_category_Developer_Tools_Editor_Extensions|Editor Extensions]] | ||
** [[#Modules_by_category_Developer_Tools_Matlab|Matlab]] | ** [[#Modules_by_category_Developer_Tools_Matlab|Matlab]] | ||
| + | ** [[#Modules_by_category_Developer_Tools_Segment_Editor_Extensions|Segment Editor Extensions]] | ||
| + | ** [[#Modules_by_category_Developer_Tools_Utils|Utils]] | ||
* [[#Modules_by_category_Diffusion|Diffusion]] | * [[#Modules_by_category_Diffusion|Diffusion]] | ||
** [[#Modules_by_category_Diffusion_Diffusion_Data_Conversion|Diffusion Data Conversion]] | ** [[#Modules_by_category_Diffusion_Diffusion_Data_Conversion|Diffusion Data Conversion]] | ||
** [[#Modules_by_category_Diffusion_Diffusion_Tensor_Images|Diffusion Tensor Images]] | ** [[#Modules_by_category_Diffusion_Diffusion_Tensor_Images|Diffusion Tensor Images]] | ||
** [[#Modules_by_category_Diffusion_Diffusion_Weighted_Images|Diffusion Weighted Images]] | ** [[#Modules_by_category_Diffusion_Diffusion_Weighted_Images|Diffusion Weighted Images]] | ||
| − | ** [[# | + | ** [[#Modules_by_category_Diffusion_Import_and_Export|Import and Export]] |
| + | ** [[#Modules_by_category_Diffusion_Process|Process]] | ||
| + | ** [[#Modules_by_category_Diffusion_Quantify|Quantify]] | ||
** [[#Modules_by_category_Diffusion_Tractography|Tractography]] | ** [[#Modules_by_category_Diffusion_Tractography|Tractography]] | ||
| + | *** [[#Modules_by_category_Tractography_Region-based|Region-based]] | ||
| + | ** [[#Modules_by_category_Diffusion_Utilities|Utilities]] | ||
* [[#Modules_by_category_Editor_Effects|Editor Effects]] | * [[#Modules_by_category_Editor_Effects|Editor Effects]] | ||
| − | * [[#Modules_by_category_EditorEffect| | + | * [[#Modules_by_category_EditorEffect|EditorEffect]] |
* [[#Modules_by_category_Endoscopy|Endoscopy]] | * [[#Modules_by_category_Endoscopy|Endoscopy]] | ||
* [[#Modules_by_category_Examples|Examples]] | * [[#Modules_by_category_Examples|Examples]] | ||
| Line 46: | Line 52: | ||
*** [[#Modules_by_category_Work_in_Progress_Diffusion_Tensor|Diffusion Tensor]] | *** [[#Modules_by_category_Work_in_Progress_Diffusion_Tensor|Diffusion Tensor]] | ||
**** [[#Modules_by_category_Diffusion_Tensor_Test|Test]] | **** [[#Modules_by_category_Diffusion_Tensor_Test|Test]] | ||
| + | * [[#Modules_by_category_Libraries|Libraries]] | ||
| + | * [[#Modules_by_category_Machine_Learning|Machine Learning]] | ||
* [[#Modules_by_category_Margin_Calculator|Margin Calculator]] | * [[#Modules_by_category_Margin_Calculator|Margin Calculator]] | ||
* [[#Modules_by_category_Mesh_Generation|Mesh Generation]] | * [[#Modules_by_category_Mesh_Generation|Mesh Generation]] | ||
| − | * [[#Modules_by_category_MeshGeneration| | + | * [[#Modules_by_category_MeshGeneration|MeshGeneration]] |
* [[#Modules_by_category_Microscopy|Microscopy]] | * [[#Modules_by_category_Microscopy|Microscopy]] | ||
| − | * [[#Modules_by_category_MultiVolume_Support| | + | * [[#Modules_by_category_MultiVolume_Support|MultiVolume Support]] |
| + | * [[#Modules_by_category_Pathology|Pathology]] | ||
| + | * [[#Modules_by_category_Perk_Tutor|Perk Tutor]] | ||
* [[#Modules_by_category_Plastimatch|Plastimatch]] | * [[#Modules_by_category_Plastimatch|Plastimatch]] | ||
** [[#Modules_by_category_Plastimatch_Registration|Registration]] | ** [[#Modules_by_category_Plastimatch_Registration|Registration]] | ||
** [[#Modules_by_category_Plastimatch_Utilities|Utilities]] | ** [[#Modules_by_category_Plastimatch_Utilities|Utilities]] | ||
* [[#Modules_by_category_Quantification|Quantification]] | * [[#Modules_by_category_Quantification|Quantification]] | ||
| − | ** [[#Modules_by_category_Quantification_ChangeQuantification| | + | ** [[#Modules_by_category_Quantification_ChangeQuantification|ChangeQuantification]] |
| + | * [[#Modules_by_category_Radiology|Radiology]] | ||
* [[#Modules_by_category_Radiotherapy|Radiotherapy]] | * [[#Modules_by_category_Radiotherapy|Radiotherapy]] | ||
* [[#Modules_by_category_Registration|Registration]] | * [[#Modules_by_category_Registration|Registration]] | ||
| Line 65: | Line 76: | ||
** [[#Modules_by_category_Segmentation_Specialized|Specialized]] | ** [[#Modules_by_category_Segmentation_Specialized|Specialized]] | ||
* [[#Modules_by_category_Sequences|Sequences]] | * [[#Modules_by_category_Sequences|Sequences]] | ||
| − | |||
* [[#Modules_by_category_Slicelets|Slicelets]] | * [[#Modules_by_category_Slicelets|Slicelets]] | ||
| + | * [[#Modules_by_category_SlicerProstate|SlicerProstate]] | ||
* [[#Modules_by_category_Surface_Models|Surface Models]] | * [[#Modules_by_category_Surface_Models|Surface Models]] | ||
| − | * [[#Modules_by_category_TestCases| | + | * [[#Modules_by_category_TestCases|TestCases]] |
* [[#Modules_by_category_Testing|Testing]] | * [[#Modules_by_category_Testing|Testing]] | ||
** [[#Modules_by_category_Testing_IGT_Tests|IGT Tests]] | ** [[#Modules_by_category_Testing_IGT_Tests|IGT Tests]] | ||
| − | ** [[#Modules_by_category_Testing_SlicerRT_Tests| | + | ** [[#Modules_by_category_Testing_SlicerRT_Tests|SlicerRT Tests]] |
| − | ** [[#Modules_by_category_Testing_TestCases| | + | ** [[#Modules_by_category_Testing_TestCases|TestCases]] |
| + | * [[#Modules_by_category_Ultrasound|Ultrasound]] | ||
| + | * [[#Modules_by_category_Uncategorized|Uncategorized]] | ||
* [[#Modules_by_category_Utilities|Utilities]] | * [[#Modules_by_category_Utilities|Utilities]] | ||
** [[#Modules_by_category_Utilities_BRAINS|BRAINS]] | ** [[#Modules_by_category_Utilities_BRAINS|BRAINS]] | ||
* [[#Modules_by_category_Vascular_Modeling_Toolkit|Vascular Modeling Toolkit]] | * [[#Modules_by_category_Vascular_Modeling_Toolkit|Vascular Modeling Toolkit]] | ||
| + | * [[#Modules_by_category_Virtual_Reality|Virtual Reality]] | ||
| + | * [[#Modules_by_category_Web_System_Tools|Web System Tools]] | ||
* [[#Modules_by_category_Wizards|Wizards]] | * [[#Modules_by_category_Wizards|Wizards]] | ||
| + | * [[#Modules_by_category_XNATSlicer|XNATSlicer]] | ||
| + | <span id='Modules_by_category_Astronomy'></span> | ||
| + | == Astronomy == | ||
| + | * [[Documentation/Nightly/Modules/AstroVolume|AstroVolume]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/AstroReproject|AstroReproject]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/AstroStatistics|AstroStatistics]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/AstroMasking|AstroMasking]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/AstroSmoothing|AstroSmoothing]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/AstroSampleData|AstroSampleData]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/AstroProfiles|AstroProfiles]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/AstroMomentMaps|AstroMomentMaps]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/AstroPVSlice|AstroPVSlice]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/AstroPVDiagram|AstroPVDiagram]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/AstroModeling|AstroModeling]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/AstroWelcome|AstroWelcome]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/SlicerAstroDataProbe|SlicerAstroDataProbe]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small> | ||
<span id='Modules_by_category_Cardiac'></span> | <span id='Modules_by_category_Cardiac'></span> | ||
| + | |||
== Cardiac == | == Cardiac == | ||
| − | * [[Documentation/Nightly/Extensions/SlicerHeart| | + | * [[Documentation/Nightly/Extensions/SlicerHeart|Philips4dUsDicomPatcher]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerHeart|SlicerHeart]] extension)</small> |
| − | * [[Documentation/Nightly/Extensions/SlicerHeart| | + | * [[Documentation/Nightly/Extensions/SlicerHeart|ValveView]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerHeart|SlicerHeart]] extension)</small> |
<span id='Modules_by_category_Cardiac_MRI_Toolkit'></span> | <span id='Modules_by_category_Cardiac_MRI_Toolkit'></span> | ||
== Cardiac MRI Toolkit == | == Cardiac MRI Toolkit == | ||
| − | * [http://capulet.med.utah.edu/namic/cmrslicer/ | + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkitPVAntrumCut] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac_MRI_Toolkit] extension)</small> |
| − | * [http://capulet.med.utah.edu/namic/cmrslicer/ | + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkitBooleanREMOVEFilter] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac_MRI_Toolkit] extension)</small> |
| − | * [[Documentation/Nightly/Modules/LASegmentationWorkflow| | + | * [[Documentation/Nightly/Modules/LASegmentationWorkflow|LASegmentationWorkflow]] <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac_MRI_Toolkit] extension)</small> |
| − | * [http://capulet.med.utah.edu/namic/cmrslicer/ | + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkitRegistrationBRAINSFit] <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac_MRI_Toolkit] extension)</small> |
| − | * [http://capulet.med.utah.edu/namic/cmrslicer/ | + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkitAutomaticLeftAtrialScar] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac_MRI_Toolkit] extension)</small> |
| − | * [http://capulet.med.utah.edu/namic/cmrslicer/ | + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkitConnectedThresholdFilter] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac_MRI_Toolkit] extension)</small> |
| − | * [http://capulet.med.utah.edu/namic/cmrslicer/ | + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkitWizard] <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac_MRI_Toolkit] extension)</small> |
| − | * [http://capulet.med.utah.edu/namic/cmrslicer/ | + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkitIsolatedConnectedFilter] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac_MRI_Toolkit] extension)</small> |
| − | * [http://capulet.med.utah.edu/namic/cmrslicer/ | + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkitInhomogeneityCorrection] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac_MRI_Toolkit] extension)</small> |
| − | * [http://capulet.med.utah.edu/namic/cmrslicer/ | + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkitAxialDilate] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac_MRI_Toolkit] extension)</small> |
| − | * [[Documentation/Nightly/Modules/ScarVisualization| | + | * [[Documentation/Nightly/Modules/ScarVisualization|ScarVisualization]] <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac_MRI_Toolkit] extension)</small> |
| − | * [http://capulet.med.utah.edu/namic/cmrslicer/ | + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkitRegistration] <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac_MRI_Toolkit] extension)</small> |
| − | * [http://capulet.med.utah.edu/namic/cmrslicer/ | + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkitLASegmentationGraphCuts] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac_MRI_Toolkit] extension)</small> |
<span id='Modules_by_category_Chest_Imaging_Platform'></span> | <span id='Modules_by_category_Chest_Imaging_Platform'></span> | ||
== Chest Imaging Platform == | == Chest Imaging Platform == | ||
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org CIP_MIPViewer] <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org CIP_BodyComposition] <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | < | + | * [http://www.chestimagingplatform.org CIP_InteractiveLobeSegmentation] <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | + | * [http://www.chestimagingplatform.org CIP_TracheaStentPlanning] <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> | |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org CIP_LesionModel] <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org AirwayInspector] <small>(loadable, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org CIP_PAARatio] <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org CIP_CalciumScoring] <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org CIP_ParenchymaAnalysis] <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org CIP_ParenchymaSubtypeTraining] <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| + | * [http://www.chestimagingplatform.org CIP_PointsLabelling] <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> | ||
<span id='Modules_by_category_Chest_Imaging_Platform_Toolkit'></span> | <span id='Modules_by_category_Chest_Imaging_Platform_Toolkit'></span> | ||
=== Toolkit === | === Toolkit === | ||
<span id='Modules_by_category_Toolkit_Particles'></span> | <span id='Modules_by_category_Toolkit_Particles'></span> | ||
==== Particles ==== | ==== Particles ==== | ||
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org ExtractParticlesFromChestRegionChestType] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org FilterVesselParticleData] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org RemoveParticlesFromParticlesDataSet] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org PerturbParticles] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org MergeParticleDataSets] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org FilterAirwayParticleData] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org FitLobeSurfaceModelsToParticleData] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org ClassifyFissureParticles] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org GenerateStenciledLabelMapFromParticles] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org FilterFissureParticleData] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
<span id='Modules_by_category_Toolkit_Processing'></span> | <span id='Modules_by_category_Toolkit_Processing'></span> | ||
==== Processing ==== | ==== Processing ==== | ||
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org ResampleLabelMap] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org RescaleLabelMap] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org GenerateMedianFilteredImage] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org LabelMapFromRegionAndTypePoints] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org CropLung] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org GenerateNLMFilteredImage] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org RemoveChestTypeFromLabelMapUsingParticles] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org GenerateAtlasConvexHull] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org RemapLabelMap] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org ComputeFissureFeatureVectors] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org GenerateLobeSurfaceModels] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org FilterConnectedComponents] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org ExtractChestLabelMap] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org PerformMorphological] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org ExtractFissureBoundaryFromLobeMap] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org EnhanceFissuresInImage] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org GraphCutsOptimization] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org GenerateDistanceMapFromLabelMap] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org ResampleCT] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org ComputeFeatureStrength] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org ComputeDistanceMap] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org QualityControl] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| + | * [http://www.chestimagingplatform.org GenerateImageSubVolumes] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> | ||
<span id='Modules_by_category_Toolkit_Quantification'></span> | <span id='Modules_by_category_Toolkit_Quantification'></span> | ||
==== Quantification ==== | ==== Quantification ==== | ||
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org EvaluateLungLobeSegmentationResults] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org GetTransformationKappa] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org ReadWriteImageData] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org ComputeIntensityStatistics] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org ComputeCrossSectionalArea] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org GenerateParenchymaPhenotypes] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org LabelParticlesByChestRegionChestType] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org GetTransformationSimilarityMetric] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org GetTransformationKappa2D] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
<span id='Modules_by_category_Toolkit_Registration'></span> | <span id='Modules_by_category_Toolkit_Registration'></span> | ||
==== Registration ==== | ==== Registration ==== | ||
| − | * [http://www.chestimagingplatform.org | + | *[[:Category:Documentation/Nightly/Modules/Registration|Introduction to Registration]] <small>(by Dominik Meier)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org RegisterLungAtlas] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org RegisterLabelMaps] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| + | * [http://www.chestimagingplatform.org RegisterCT] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> | ||
<span id='Modules_by_category_Toolkit_Segmentation'></span> | <span id='Modules_by_category_Toolkit_Segmentation'></span> | ||
| + | |||
==== Segmentation ==== | ==== Segmentation ==== | ||
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org GenerateOtsuLungCast] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org SegmentLungAirways] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org SegmentLungLobes] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org GeneratePartialLungLabelMap] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org GenerateSimpleLungMask] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org SplitLeftLungRightLung] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| + | * [http://www.chestimagingplatform.org GenerateBinaryThinning3D] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> | ||
| + | * [http://www.chestimagingplatform.org GenerateLesionSegmentation] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> | ||
<span id='Modules_by_category_Toolkit_Utils'></span> | <span id='Modules_by_category_Toolkit_Utils'></span> | ||
==== Utils ==== | ==== Utils ==== | ||
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org ConvertDicom] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org RegionTypeLocationsToROIVolume] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org ReadVTKWriteNRRDs] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org GenerateModel] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org GenerateOverlayImages] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org ExecuteSystemCommand] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org GetStructuresInLabelMap] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org FindPatchMatch] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org ConvertChestRegionChestTypeToLabelMapValue] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org MaskOutLabelMapStructures] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org ReadNRRDsWriteVTK] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org ConvertLabelMapValueToChestRegionChestType] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org ReadWriteRegionAndTypePoints] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org MergeChestLabelMaps] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org ReadVidaWriteCIP] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org ReadDicomWriteTags] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| + | * [http://www.chestimagingplatform.org TransferRegionAndTypeIndicesToFromPoints] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> | ||
<span id='Modules_by_category_CIP'></span> | <span id='Modules_by_category_CIP'></span> | ||
== CIP == | == CIP == | ||
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org CIP_] <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| + | * [http://www.chestimagingplatform.org CIP_Common] <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> | ||
<span id='Modules_by_category_Converters'></span> | <span id='Modules_by_category_Converters'></span> | ||
== Converters == | == Converters == | ||
| − | * [[Documentation/Nightly/Modules/QuadEdgeSurfaceMesher| | + | * [[Documentation/Nightly/Modules/QuadEdgeSurfaceMesher|QuadEdgeSurfaceMesher]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerProstate|SlicerProstate]] extension)</small> |
| − | * [[Documentation/Nightly/Modules/CropVolume| | + | * [[Documentation/Nightly/Modules/CropVolume|CropVolume]] <small>(loadable, built-in)</small> |
| − | * [[Documentation/Nightly/Modules/OrientScalarVolume| | + | * [[Documentation/Nightly/Modules/OrientScalarVolume|OrientScalarVolume]] <small>(cli, built-in)</small> |
| − | * [[Documentation/Nightly/Extensions/UKFTractography| | + | * [[Documentation/Nightly/Extensions/UKFTractography|ConvertVTK]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/UKFTractography|UKFTractography]] extension)</small> |
| − | * [[Documentation/Nightly/Modules/VectorToScalarVolume| | + | * [[Documentation/Nightly/Modules/VectorToScalarVolume|VectorToScalarVolume]] <small>(scripted, built-in)</small> |
| − | * [[Documentation/Nightly/Modules/CreateDICOMSeries| | + | * [[Documentation/Nightly/Modules/CreateDICOMSeries|CreateDICOMSeries]] <small>(cli, built-in)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org ParticlesDisplay] <small>(loadable, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org RegionType] <small>(loadable, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
<span id='Modules_by_category_Developer_Tools'></span> | <span id='Modules_by_category_Developer_Tools'></span> | ||
== Developer Tools == | == Developer Tools == | ||
* [[Documentation/Nightly/Modules/Cameras|Cameras]] <small>(loadable, built-in)</small> | * [[Documentation/Nightly/Modules/Cameras|Cameras]] <small>(loadable, built-in)</small> | ||
| − | * [[Documentation/Nightly/Modules/ExecutionModelTour| | + | * [[Documentation/Nightly/Modules/ExecutionModelTour|ExecutionModelTour]] <small>(cli, built-in)</small> |
| − | * [[Documentation/Nightly/Extensions/DebuggingTools| | + | * [[Documentation/Nightly/Extensions/DebuggingTools|NodeModifiedStatistics]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/DebuggingTools|DebuggingTools]] extension)</small> |
| − | * [[Documentation/Nightly/Extensions/DebuggingTools| | + | * [[Documentation/Nightly/Extensions/DebuggingTools|PyDevRemoteDebug]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/DebuggingTools|DebuggingTools]] extension)</small> |
| − | * [[Documentation/Nightly/Modules/ExtensionWizard| | + | * [[Documentation/Nightly/Modules/ExtensionWizard|ExtensionWizard]] <small>(scripted, built-in)</small> |
| − | * [[Documentation/Nightly/Modules/ImageMaker| | + | * [[Documentation/Nightly/Extensions/DebuggingTools|NodeInfo]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/DebuggingTools|DebuggingTools]] extension)</small> |
| − | * [[Documentation/Nightly/Modules/ExtensionStats| | + | * [[Documentation/Nightly/Modules/ImageMaker|ImageMaker]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/ImageMaker|ImageMaker]] extension)</small> |
| − | * [[Documentation/Nightly/Modules/DeveloperToolsForExtensions| | + | * [[Documentation/Nightly/Modules/ExtensionStats|ExtensionStats]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/DeveloperToolsForExtensions|DeveloperToolsForExtensions]] extension)</small> |
| − | * [[Documentation/Nightly/Modules/EventBroker| | + | * [[Documentation/Nightly/Modules/DeveloperToolsForExtensions|DeveloperToolsForExtensions]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/DeveloperToolsForExtensions|DeveloperToolsForExtensions]] extension)</small> |
| − | * | + | * [[Documentation/Nightly/Modules/EventBroker|EventBroker]] |
| + | * DoubleArrays <small>(loadable, built-in)</small> | ||
<span id='Modules_by_category_Developer_Tools_DICOM_Plugins'></span> | <span id='Modules_by_category_Developer_Tools_DICOM_Plugins'></span> | ||
=== DICOM Plugins === | === DICOM Plugins === | ||
| − | * | + | * DICOMParametricMapPlugin |
| − | * | + | * DicomUltrasoundPlugin |
| − | * | + | * DICOMSegmentationPlugin |
| + | * DICOMSlicerDataBundlePlugin | ||
| + | * DICOMTID1500Plugin | ||
* [[Documentation/Nightly/Modules/DICOMPETSUVPlugin|DICOMPETSUVPlugin]] | * [[Documentation/Nightly/Modules/DICOMPETSUVPlugin|DICOMPETSUVPlugin]] | ||
| − | * | + | * DICOMScalarVolumePlugin |
| − | * | + | * DICOMDiffusionVolumePlugin |
| − | * | + | * DICOMLongitudinalPETCTPlugin |
| − | * | + | * DicomSroImportPlugin |
* [[Documentation/Nightly/Modules/DICOMRWVMPlugin|DICOMRWVMPlugin]] | * [[Documentation/Nightly/Modules/DICOMRWVMPlugin|DICOMRWVMPlugin]] | ||
| − | * | + | * DicomRtImportExportPlugin |
| − | * | + | * MultiVolumeImporterPlugin |
<span id='Modules_by_category_Developer_Tools_Editor_Extensions'></span> | <span id='Modules_by_category_Developer_Tools_Editor_Extensions'></span> | ||
=== Editor Extensions === | === Editor Extensions === | ||
| − | * [ | + | * [[Documentation/4.3/Modules/FastGrowCut|FastGrowCutEffect]] <small>(scripted, bundled in [[Documentation/4.3/Modules/FastGrowCut|FastGrowCutEffect]] extension)</small> |
| − | * [ | + | * [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|CarreraSliceEffect]] <small>(scripted, bundled in [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|CarreraSlice]] extension)</small> |
| − | * [[Documentation/Nightly/Modules/PETTumorSegmentationEffect| | + | * [[Documentation/Nightly/Extensions/SlicerPathology|QuickTCGAEffect]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerPathology|SlicerPathology]] extension)</small> |
| − | * [[Documentation/Nightly/Extensions/IASEM| | + | * [[Documentation/Nightly/Modules/PETTumorSegmentationEffect|PETTumorSegmentationEffect]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PETTumorSegmentation|PETTumorSegmentation]] extension)</small> |
| − | * [[Documentation/Nightly/Extensions/IASEM| | + | * [[Documentation/Nightly/Extensions/IASEM|BinaryWatershedEffect]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small> |
| + | * [[Documentation/Nightly/Extensions/IASEM|DoubleThresholdEffect]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small> | ||
| + | * [[Documentation/Nightly/Extensions/SlicerPathology|ShortCutEffect]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerPathology|SlicerPathology]] extension)</small> | ||
<span id='Modules_by_category_Developer_Tools_Matlab'></span> | <span id='Modules_by_category_Developer_Tools_Matlab'></span> | ||
=== Matlab === | === Matlab === | ||
| − | * [[Documentation/Nightly/Modules/MatlabModuleGenerator| | + | * [[Documentation/Nightly/Modules/MatlabModuleGenerator|MatlabModuleGenerator]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/MatlabBridge|MatlabBridge]] extension)</small> |
| − | * [[Documentation/Nightly/Modules/MatlabCommander| | + | * [[Documentation/Nightly/Modules/MatlabCommander|MatlabCommander]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/MatlabBridge|MatlabBridge]] extension)</small> |
| + | <span id='Modules_by_category_Developer_Tools_Segment_Editor_Extensions'></span> | ||
| + | === Segment Editor Extensions === | ||
| + | * [[Documentation/Nightly/Extensions/PETTumorSegmentation|SegmentEditorPETTumor]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PETTumorSegmentation|PETTumorSegmentation]] extension)</small> | ||
| + | <span id='Modules_by_category_Developer_Tools_Utils'></span> | ||
| + | === Utils === | ||
| + | * [[Documentation/Nightly/Extensions/SlicerProstate|SlicerProstate]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerProstate|SlicerProstate]] extension)</small> | ||
<span id='Modules_by_category_Diffusion'></span> | <span id='Modules_by_category_Diffusion'></span> | ||
== Diffusion == | == Diffusion == | ||
| − | * [[Documentation/Nightly/Modules/ | + | * [[Documentation/Nightly/Modules/DMRIInstall|DMRIInstall]] <small>(scripted, built-in)</small> |
| − | |||
<span id='Modules_by_category_Diffusion_Diffusion_Data_Conversion'></span> | <span id='Modules_by_category_Diffusion_Diffusion_Data_Conversion'></span> | ||
=== Diffusion Data Conversion === | === Diffusion Data Conversion === | ||
| Line 246: | Line 296: | ||
<span id='Modules_by_category_Diffusion_Diffusion_Tensor_Images'></span> | <span id='Modules_by_category_Diffusion_Diffusion_Tensor_Images'></span> | ||
=== Diffusion Tensor Images === | === Diffusion Tensor Images === | ||
| − | + | * [[Documentation/Nightly/Extensions/ResampleDTIlogEuclidean|ResampleDTIlogEuclidean]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/ResampleDTIlogEuclidean|ResampleDTIlogEuclidean]] extension)</small> | |
| − | |||
| − | * [[Documentation/Nightly/Extensions/ResampleDTIlogEuclidean| | ||
| − | |||
| − | |||
<span id='Modules_by_category_Diffusion_Diffusion_Weighted_Images'></span> | <span id='Modules_by_category_Diffusion_Diffusion_Weighted_Images'></span> | ||
=== Diffusion Weighted Images === | === Diffusion Weighted Images === | ||
| − | |||
| − | |||
* BRAINSDWICleanup <small>(cli, built-in)</small> | * BRAINSDWICleanup <small>(cli, built-in)</small> | ||
| − | * [[Documentation/Nightly/ | + | <span id='Modules_by_category_Diffusion_Import_and_Export'></span> |
| − | * [[Documentation/Nightly/Modules/DiffusionWeightedVolumeMasking| | + | === Import and Export === |
| − | * [[Documentation/Nightly/Modules/ | + | * DWIConvert <small>(cli, built-in)</small> |
| − | <span id=' | + | * [[Documentation/Nightly/Extensions/SlicerDMRI|DICOMTract_to_VTK]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small> |
| − | === | + | * [[Documentation/Nightly/Extensions/SlicerDMRI|VTK_to_DICOMTract]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small> |
| − | * | + | <span id='Modules_by_category_Diffusion_Process'></span> |
| + | === Process === | ||
| + | * [[Documentation/Nightly/Modules/DiffusionWeightedVolumeMasking|DiffusionWeightedVolumeMasking]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/DWIToDTIEstimation|DWIToDTIEstimation]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small> | ||
| + | <span id='Modules_by_category_Diffusion_Quantify'></span> | ||
| + | === Quantify === | ||
| + | * [[Documentation/Nightly/Modules/DiffusionTensorScalarMeasurements|DiffusionTensorScalarMeasurements]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/FiberTractMeasurements|FiberTractMeasurements]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small> | ||
<span id='Modules_by_category_Diffusion_Tractography'></span> | <span id='Modules_by_category_Diffusion_Tractography'></span> | ||
=== Tractography === | === Tractography === | ||
| − | * | + | * [[Documentation/Nightly/Modules/TractographyInteractiveSeeding|TractographyInteractiveSeeding]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small> |
| − | * [[Documentation/Nightly/Modules/ | + | * [[Documentation/Nightly/Modules/TractographyDisplay|TractographyDisplay]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small> |
* [[Documentation/Nightly/Modules/UKFTractography|UKFTractography]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/UKFTractography|UKFTractography]] extension)</small> | * [[Documentation/Nightly/Modules/UKFTractography|UKFTractography]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/UKFTractography|UKFTractography]] extension)</small> | ||
| − | * [[Documentation/Nightly/Modules/ | + | <span id='Modules_by_category_Tractography_Region-based'></span> |
| + | ==== Region-based ==== | ||
| + | * [[Documentation/Nightly/Modules/TractographyLabelMapSeeding|TractographyLabelMapSeeding]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/FiberBundleLabelSelect|FiberBundleLabelSelect]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small> | ||
| + | <span id='Modules_by_category_Diffusion_Utilities'></span> | ||
| + | === Utilities === | ||
| + | * BRAINSDWICleanup <small>(cli, built-in)</small> | ||
| + | * [[Documentation/Nightly/Modules/ResampleDTIVolume|ResampleDTIVolume]] <small>(cli, built-in)</small> | ||
| + | * [[Documentation/Nightly/Modules/FiberBundleToLabelMap|FiberBundleToLabelMap]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/ResampleScalarVectorDWIVolume|ResampleScalarVectorDWIVolume]] <small>(cli, built-in)</small> | ||
| + | * [[Documentation/Nightly/Extensions/SlicerDMRI|DICOM2FullBrainTractography]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small> | ||
<span id='Modules_by_category_Editor_Effects'></span> | <span id='Modules_by_category_Editor_Effects'></span> | ||
== Editor Effects == | == Editor Effects == | ||
| − | * [[Documentation/Nightly/Extensions/WindowLevelEffect| | + | * [[Documentation/Nightly/Extensions/WindowLevelEffect|WindowLevelEffect]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/WindowLevelEffect|WindowLevelEffect]] extension)</small> |
<span id='Modules_by_category_EditorEffect'></span> | <span id='Modules_by_category_EditorEffect'></span> | ||
== EditorEffect == | == EditorEffect == | ||
| − | * [[Documentation/Nightly/Extensions/PETTumorSegmentation| | + | * [[Documentation/Nightly/Extensions/PETTumorSegmentation|PETTumorSegmentation]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/PETTumorSegmentation|PETTumorSegmentation]] extension)</small> |
<span id='Modules_by_category_Endoscopy'></span> | <span id='Modules_by_category_Endoscopy'></span> | ||
== Endoscopy == | == Endoscopy == | ||
| Line 279: | Line 340: | ||
<span id='Modules_by_category_Examples'></span> | <span id='Modules_by_category_Examples'></span> | ||
== Examples == | == Examples == | ||
| − | * [[Documentation/Nightly/Modules/FastGrowCut| | + | * [[Documentation/Nightly/Modules/FastGrowCut|FastGrowCut]] <small>(loadable, bundled in [[Documentation/4.3/Modules/FastGrowCut|FastGrowCutEffect]] extension)</small> |
| − | * [ | + | * [[Documentation/Nightly/Extensions/SlicerPathology|QuickTCGA]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerPathology|SlicerPathology]] extension)</small> |
| − | * [ | + | * [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|FastGrowCutSegmenter]] <small>(loadable, bundled in [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|CarreraSlice]] extension)</small> |
| − | * [http://publish.uwo.ca/~dchen285/GraphCutSegment/GraphCutSegment.html | + | * [[Documentation/Nightly/Extensions/SlicerPathology|ShortCutCore]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerPathology|SlicerPathology]] extension)</small> |
| + | * [http://publish.uwo.ca/~dchen285/GraphCutSegment/GraphCutSegment.html GraphCutInteractiveSegmenter] <small>(loadable, bundled in [http://publish.uwo.ca/~dchen285/GraphCutSegment/GraphCutSegment.html GraphCutSegment] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|CarreraSlice]] <small>(loadable, bundled in [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|CarreraSlice]] extension)</small> | ||
<span id='Modules_by_category_Exporter'></span> | <span id='Modules_by_category_Exporter'></span> | ||
== Exporter == | == Exporter == | ||
| − | * [[Documentation/Nightly/Modules/SlicerToKiwiExporter| | + | * [[Documentation/Nightly/Modules/SlicerToKiwiExporter|SlicerToKiwiExporter]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerToKiwiExporter|SlicerToKiwiExporter]] extension)</small> |
<span id='Modules_by_category_Filter'></span> | <span id='Modules_by_category_Filter'></span> | ||
== Filter == | == Filter == | ||
| − | * | + | * IslandRemoval <small>(cli, built-in)</small> |
<span id='Modules_by_category_Filtering'></span> | <span id='Modules_by_category_Filtering'></span> | ||
== Filtering == | == Filtering == | ||
| − | * [[Documentation/Nightly/Modules/SegmentationSmoothing| | + | * [[Documentation/Nightly/Modules/SegmentationSmoothing|SegmentationSmoothing]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerProstate|SlicerProstate]] extension)</small> |
| − | * [[Documentation/Nightly/Modules/N4ITKBiasFieldCorrection| | + | * [[Documentation/Nightly/Modules/N4ITKBiasFieldCorrection|N4ITKBiasFieldCorrection]] <small>(cli, built-in)</small> |
| − | * [[Documentation/Nightly/Modules/ImageLabelCombine| | + | * [[Documentation/Nightly/Modules/ImageLabelCombine|ImageLabelCombine]] <small>(cli, built-in)</small> |
| − | * [[Documentation/Nightly/Modules/VotingBinaryHoleFillingImageFilter| | + | * [[Documentation/Nightly/Modules/VotingBinaryHoleFillingImageFilter|VotingBinaryHoleFillingImageFilter]] <small>(cli, built-in)</small> |
| − | * [[Documentation/Nightly/Modules/CheckerBoardFilter| | + | * [[Documentation/Nightly/Modules/CheckerBoardFilter|CheckerBoardFilter]] <small>(cli, built-in)</small> |
| − | * [[Documentation/Nightly/Modules/ | + | * [[Documentation/Nightly/Modules/AstroSmoothing|AstroSmoothing]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small> |
| − | * [ | + | * [https://slicer.readthedocs.io/en/latest/user_guide/modules/extractskeleton.html ExtractSkeleton] <small>(cli, built-in)</small> |
| − | * [ | + | * [https://slicer.readthedocs.io/en/latest/user_guide/modules/simplefilters.html SimpleFilters] <small>(scripted, built-in)</small> |
| − | * [ | + | * [https://slicer.readthedocs.io/en/latest/user_guide/modules/thresholdscalarvolume.html ThresholdScalarVolume] <small>(cli, built-in)</small> |
| + | * [https://slicer.readthedocs.io/en/latest/user_guide/modules/histogrammatching.html HistogramMatching] <small>(cli, built-in)</small> | ||
<span id='Modules_by_category_Filtering_Arithmetic'></span> | <span id='Modules_by_category_Filtering_Arithmetic'></span> | ||
=== Arithmetic === | === Arithmetic === | ||
| − | * [[Documentation/Nightly/Modules/MultiplyScalarVolumes| | + | * [[Documentation/Nightly/Modules/MultiplyScalarVolumes|MultiplyScalarVolumes]] <small>(cli, built-in)</small> |
| − | * [[Documentation/Nightly/Modules/AddScalarVolumes| | + | * [[Documentation/Nightly/Modules/AddScalarVolumes|AddScalarVolumes]] <small>(cli, built-in)</small> |
| − | * [[Documentation/Nightly/Modules/MaskScalarVolume| | + | * [[Documentation/Nightly/Modules/MaskScalarVolume|MaskScalarVolume]] <small>(cli, built-in)</small> |
| − | * [[Documentation/Nightly/Modules/SubtractScalarVolumes| | + | * [[Documentation/Nightly/Modules/SubtractScalarVolumes|SubtractScalarVolumes]] <small>(cli, built-in)</small> |
| − | * [[Documentation/Nightly/Modules/CastScalarVolume| | + | * [[Documentation/Nightly/Modules/CastScalarVolume|CastScalarVolume]] <small>(cli, built-in)</small> |
| + | * [[Documentation/Nightly/Extensions/OpenCVExample|BlendVectorVolumes]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/OpenCVExample|OpenCVExample]] extension)</small> | ||
<span id='Modules_by_category_Filtering_Denoising'></span> | <span id='Modules_by_category_Filtering_Denoising'></span> | ||
=== Denoising === | === Denoising === | ||
| − | * [[Documentation/Nightly/Modules/CurvatureAnisotropicDiffusion| | + | * [[Documentation/Nightly/Modules/CurvatureAnisotropicDiffusion|CurvatureAnisotropicDiffusion]] <small>(cli, built-in)</small> |
| − | * [[Documentation/Nightly/Modules/GradientAnisotropicDiffusion| | + | * [[Documentation/Nightly/Modules/GradientAnisotropicDiffusion|GradientAnisotropicDiffusion]] <small>(cli, built-in)</small> |
| − | * [[Documentation/Nightly/Modules/MedianImageFilter| | + | * [[Documentation/Nightly/Modules/MedianImageFilter|MedianImageFilter]] <small>(cli, built-in)</small> |
| − | * [[Documentation/Nightly/Modules/GaussianBlurImageFilter| | + | * [[Documentation/Nightly/Modules/GaussianBlurImageFilter|GaussianBlurImageFilter]] <small>(cli, built-in)</small> |
<span id='Modules_by_category_Filtering_Morphology'></span> | <span id='Modules_by_category_Filtering_Morphology'></span> | ||
=== Morphology === | === Morphology === | ||
| − | * [[Documentation/Nightly/Modules/GrayscaleFillHoleImageFilter| | + | * [[Documentation/Nightly/Modules/GrayscaleFillHoleImageFilter|GrayscaleFillHoleImageFilter]] <small>(cli, built-in)</small> |
| − | * [[Documentation/Nightly/Modules/GrayscaleGrindPeakImageFilter| | + | * [[Documentation/Nightly/Modules/GrayscaleGrindPeakImageFilter|GrayscaleGrindPeakImageFilter]] <small>(cli, built-in)</small> |
<span id='Modules_by_category_IGT'></span> | <span id='Modules_by_category_IGT'></span> | ||
| + | |||
== IGT == | == IGT == | ||
| − | * [ | + | * [[Documentation/Nightly/Extensions/SlicerIGT|Viewpoint]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small> |
| − | * [[Documentation/Nightly/Modules/CollectFiducials| | + | * [[Documentation/Nightly/Modules/CollectFiducials|CollectFiducials]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small> |
| − | * [ | + | * [[Documentation/Nightly/Extensions/SlicerIGT|TransformFusion]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small> |
| − | * [[Documentation/Nightly/ | + | * [[Documentation/Nightly/Modules/GyroGuide|GyroGuide]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/GyroGuide|GyroGuide]] extension)</small> |
| − | * [[Documentation/Nightly/ | + | * [[Documentation/Nightly/Extensions/SlicerIGT|PlusModelCatalogBrowser]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small> |
| − | * [[Documentation/Nightly/Extensions/SlicerIGT| | + | * [[Documentation/Nightly/Extensions/SlicerIGT|CreateModels]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small> |
| − | * [[Documentation/Nightly/Extensions/NeedleFinder| | + | * [[Documentation/Nightly/Extensions/NeedleFinder|NeedleFinder]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/NeedleFinder|NeedleFinder]] extension)</small> |
| − | * [[Documentation/Nightly/Modules/TrackerStabilizer| | + | * [[Documentation/Nightly/Modules/TrackerStabilizer|TrackerStabilizer]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/TrackerStabilizer|TrackerStabilizer]] extension)</small> |
| − | * [[Documentation/Nightly/Modules/PathExplorer| | + | * [[Documentation/Nightly/Modules/PathExplorer|PathExplorer]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small> |
| − | * [[Documentation/Nightly/Extensions/SlicerIGT| | + | * [[Documentation/Nightly/Extensions/SlicerIGT|UltrasoundSnapshots]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small> |
| − | * [ | + | * [[Documentation/Nightly/Extensions/SlicerIGT|BreachWarning]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small> |
| − | * [[Documentation/Nightly/Extensions/SlicerIGT| | + | * [[Documentation/Nightly/Extensions/SlicerIGT|FiducialRegistrationWizard]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small> |
| − | * [[Documentation/Nightly/Extensions/SlicerIGT| | + | * [[Documentation/Nightly/Extensions/SlicerIGT|ModelRegistration]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small> |
| − | * [[Documentation/Nightly/ | + | * [[Documentation/Nightly/Modules/ResectionVolume|ResectionVolume]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/ResectionPlanner|ResectionPlanner]] extension)</small> |
| − | * [[Documentation/Nightly/ | + | * [[Documentation/Nightly/Extensions/SlicerIGT|PivotCalibration]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small> |
| − | * [[Documentation/Nightly/ | + | * [[Documentation/Nightly/Modules/VolumeResliceDriver|VolumeResliceDriver]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small> |
| − | * [[Documentation/Nightly/Modules/OpenIGTLinkRemote| | + | * [[Documentation/Nightly/Modules/OpenIGTLinkRemote|OpenIGTLinkRemote]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small> |
| − | * [[Documentation/Nightly/ | + | * [[Documentation/Nightly/Extensions/SlicerIGT|FiducialsToModelRegistration]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small> |
| − | * [[Documentation/Nightly/Modules/ | + | * [[Documentation/Nightly/Modules/Watchdog|Watchdog]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small> |
| − | * [[Documentation/Nightly/Modules/ | + | * [[Documentation/Nightly/Modules/CornerAnnotation|CornerAnnotation]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/CornerAnnotation|CornerAnnotation]] extension)</small> |
| − | * [[Documentation/Nightly/ | + | * [[Documentation/Nightly/Modules/OpenIGTLinkIF|OpenIGTLinkIF]] <small>(loadable, built-in)</small> |
| − | * [[Documentation/Nightly/ | + | * [[Documentation/Nightly/Extensions/SlicerIGT|MarkupsToModel]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small> |
| − | * [[Documentation/Nightly/Extensions/ | + | * [[Documentation/Nightly/Extensions/iGyne|iGyne]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/iGyne|iGyne]] extension)</small> |
| − | * [[Documentation/Nightly/ | + | * [[Documentation/Nightly/Modules/PlusRemote|PlusRemote]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small> |
<span id='Modules_by_category_Informatics'></span> | <span id='Modules_by_category_Informatics'></span> | ||
== Informatics == | == Informatics == | ||
| − | * [[Documentation/Nightly/Extensions/mpReview| | + | * [[Documentation/Nightly/Extensions/DCMQI|tid1500writer]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/DCMQI|DCMQI]] extension)</small> |
| + | * [[Documentation/Nightly/Extensions/mpReview|mpReviewPreprocessor]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/mpReview|mpReview]] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/SEG2NRRD|SEG2NRRD]] <small>(cli)</small> | ||
| + | * [[Documentation/Nightly/Extensions/TCIABrowser|TCIABrowser]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/TCIABrowser|TCIABrowser]] extension)</small> | ||
| + | * [[Documentation/Nightly/Extensions/DCMQI|segimage2itkimage]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/DCMQI|DCMQI]] extension)</small> | ||
| + | * [[Documentation/Nightly/Extensions/mpReview|mpReview]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/mpReview|mpReview]] extension)</small> | ||
* [[Documentation/Nightly/Modules/Tables|Tables]] <small>(loadable, built-in)</small> | * [[Documentation/Nightly/Modules/Tables|Tables]] <small>(loadable, built-in)</small> | ||
| − | |||
| − | |||
| − | |||
* [[Documentation/Nightly/Modules/Data|Data]] <small>(loadable, built-in)</small> | * [[Documentation/Nightly/Modules/Data|Data]] <small>(loadable, built-in)</small> | ||
| + | * DumpSEGFrame <small>(cli)</small> | ||
| + | * [[Documentation/Nightly/Extensions/DCMQI|tid1500reader]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/DCMQI|DCMQI]] extension)</small> | ||
| + | * Terminologies <small>(loadable, built-in)</small> | ||
* [[Documentation/Nightly/Modules/Units|Units]] <small>(loadable, built-in)</small> | * [[Documentation/Nightly/Modules/Units|Units]] <small>(loadable, built-in)</small> | ||
* [[Documentation/Nightly/Modules/DICOM|DICOM]] <small>(scripted, built-in)</small> | * [[Documentation/Nightly/Modules/DICOM|DICOM]] <small>(scripted, built-in)</small> | ||
| − | * [[Documentation/Nightly/Modules/SampleData| | + | * [[Documentation/Nightly/Modules/SampleData|SampleData]] <small>(scripted, built-in)</small> |
* [[Documentation/Nightly/Modules/Colors|Colors]] <small>(loadable, built-in)</small> | * [[Documentation/Nightly/Modules/Colors|Colors]] <small>(loadable, built-in)</small> | ||
| − | * [[Documentation/Nightly/Extensions/CurveMaker| | + | * [[Documentation/Nightly/Extensions/CurveMaker|CurveMaker]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/CurveMaker|CurveMaker]] extension)</small> |
* [[Documentation/Nightly/Modules/Annotations|Annotations]] <small>(loadable, built-in)</small> | * [[Documentation/Nightly/Modules/Annotations|Annotations]] <small>(loadable, built-in)</small> | ||
* [[Documentation/Nightly/Modules/Markups|Markups]] <small>(loadable, built-in)</small> | * [[Documentation/Nightly/Modules/Markups|Markups]] <small>(loadable, built-in)</small> | ||
| − | * [[Documentation/Nightly/Modules/SubjectHierarchy| | + | * [[Documentation/Nightly/Modules/SubjectHierarchy|SubjectHierarchy]] <small>(loadable, built-in)</small> |
| + | * [[Documentation/Nightly/Extensions/QuantitativeReporting|QuantitativeReporting]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/QuantitativeReporting|QuantitativeReporting]] extension)</small> | ||
<span id='Modules_by_category_Informatics_Converters'></span> | <span id='Modules_by_category_Informatics_Converters'></span> | ||
=== Converters === | === Converters === | ||
| − | * [[Documentation/Nightly/ | + | * [[Documentation/Nightly/Extensions/DCMQI|itkimage2paramap]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/DCMQI|DCMQI]] extension)</small> |
| + | * [[Documentation/Nightly/Extensions/DCMQI|paramap2itkimage]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/DCMQI|DCMQI]] extension)</small> | ||
| + | * [[Documentation/Nightly/Extensions/DCMQI|itkimage2segimage]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/DCMQI|DCMQI]] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/EncodeSEG|EncodeSEG]] <small>(cli)</small> | ||
<span id='Modules_by_category_Legacy'></span> | <span id='Modules_by_category_Legacy'></span> | ||
== Legacy == | == Legacy == | ||
<span id='Modules_by_category_Legacy_Converters'></span> | <span id='Modules_by_category_Legacy_Converters'></span> | ||
=== Converters === | === Converters === | ||
| − | * [[Documentation/Nightly/Modules/BSplineToDeformationField| | + | * [[Documentation/Nightly/Modules/BSplineToDeformationField|BSplineToDeformationField]] <small>(cli, built-in)</small> |
<span id='Modules_by_category_Legacy_Filtering'></span> | <span id='Modules_by_category_Legacy_Filtering'></span> | ||
=== Filtering === | === Filtering === | ||
| − | * [[Documentation/Nightly/Modules/OtsuThresholdImageFilter| | + | * [[Documentation/Nightly/Modules/OtsuThresholdImageFilter|OtsuThresholdImageFilter]] <small>(cli, built-in)</small> |
| − | * [[Documentation/Nightly/Modules/ResampleScalarVolume| | + | * [[Documentation/Nightly/Modules/ResampleScalarVolume|ResampleScalarVolume]] <small>(cli, built-in)</small> |
<span id='Modules_by_category_Legacy_Registration'></span> | <span id='Modules_by_category_Legacy_Registration'></span> | ||
=== Registration === | === Registration === | ||
| − | * | + | * TestGridTransformRegistration <small>(cli, built-in)</small> |
| − | * [[Documentation/Nightly/Modules/ExpertAutomatedRegistration| | + | * [[Documentation/Nightly/Modules/ExpertAutomatedRegistration|ExpertAutomatedRegistration]] <small>(cli, built-in)</small> |
<span id='Modules_by_category_Legacy_Work_in_Progress'></span> | <span id='Modules_by_category_Legacy_Work_in_Progress'></span> | ||
=== Work in Progress === | === Work in Progress === | ||
| Line 381: | Line 456: | ||
<span id='Modules_by_category_Diffusion_Tensor_Test'></span> | <span id='Modules_by_category_Diffusion_Tensor_Test'></span> | ||
===== Test ===== | ===== Test ===== | ||
| − | * | + | * DiffusionTensorTest <small>(cli, built-in)</small> |
| + | <span id='Modules_by_category_Libraries'></span> | ||
| + | == Libraries == | ||
| + | * [[Documentation/Nightly/Extensions/SlicerOpenCV|OpenCV]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerOpenCV|SlicerOpenCV]] extension)</small> | ||
| + | <span id='Modules_by_category_Machine_Learning'></span> | ||
| + | == Machine Learning == | ||
| + | * [[Documentation/Nightly/Modules/DeepInfer|DeepInfer]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/DeepInfer|DeepInfer]] extension)</small> | ||
<span id='Modules_by_category_Margin_Calculator'></span> | <span id='Modules_by_category_Margin_Calculator'></span> | ||
== Margin Calculator == | == Margin Calculator == | ||
| − | * [[Documentation/Nightly/Extensions/MarginCalculator| | + | * [[Documentation/Nightly/Extensions/MarginCalculator|MarginCalculator]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/MarginCalculator|MarginCalculator]] extension)</small> |
| − | + | * [[Documentation/Nightly/Extensions/MarginCalculator|DoseMorphology]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/MarginCalculator|MarginCalculator]] extension)</small> | |
| − | * [[Documentation/Nightly/Extensions/MarginCalculator| | + | * [[Documentation/Nightly/Extensions/MarginCalculator|SyntheticRTDose]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/MarginCalculator|MarginCalculator]] extension)</small> |
| − | |||
| − | * [[Documentation/Nightly/Extensions/MarginCalculator| | ||
| − | |||
<span id='Modules_by_category_Mesh_Generation'></span> | <span id='Modules_by_category_Mesh_Generation'></span> | ||
== Mesh Generation == | == Mesh Generation == | ||
| − | * [[Documentation/Nightly/Extensions/CleaverExtension| | + | * [[Documentation/Nightly/Extensions/CleaverExtension|CleaverCLI]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/CleaverExtension|CleaverExtension]] extension)</small> |
<span id='Modules_by_category_MeshGeneration'></span> | <span id='Modules_by_category_MeshGeneration'></span> | ||
== MeshGeneration == | == MeshGeneration == | ||
| − | * [[Documentation/Nightly/Modules/BodyCentricCubicMesh| | + | * [[Documentation/Nightly/Modules/BodyCentricCubicMesh|BodyCentricCubicMesh]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/CBC_3D_I2MConversion|CBC_3D_I2MConversion]] extension)</small> |
| − | |||
<span id='Modules_by_category_Microscopy'></span> | <span id='Modules_by_category_Microscopy'></span> | ||
== Microscopy == | == Microscopy == | ||
| − | * [[Documentation/Nightly/Extensions/IASEM| | + | * [[Documentation/Nightly/Extensions/IASEM|IASEMImportSeries]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small> |
* [[Documentation/Nightly/Extensions/IASEM|IASEMImport]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small> | * [[Documentation/Nightly/Extensions/IASEM|IASEMImport]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small> | ||
| − | * [[Documentation/Nightly/Extensions/IASEM| | + | * [[Documentation/Nightly/Extensions/IASEM|BinShrink]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small> |
| − | * [[Documentation/Nightly/Extensions/IASEM| | + | * [[Documentation/Nightly/Extensions/IASEM|LabelObjectStatistics]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small> |
| − | * [[Documentation/Nightly/Extensions/IASEM| | + | * [[Documentation/Nightly/Extensions/IASEM|SpacingAwareCurvatureDiffusion]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small> |
<span id='Modules_by_category_MultiVolume_Support'></span> | <span id='Modules_by_category_MultiVolume_Support'></span> | ||
== MultiVolume Support == | == MultiVolume Support == | ||
| − | * [[Documentation/Nightly/Modules/MultiVolumeImporter| | + | * [[Documentation/Nightly/Modules/MultiVolumeImporter|MultiVolumeImporter]] <small>(scripted, built-in)</small> |
| − | * [[Documentation/Nightly/Modules/MultiVolumeExplorer| | + | * [[Documentation/Nightly/Modules/MultiVolumeExplorer|MultiVolumeExplorer]] <small>(loadable, built-in)</small> |
| + | <span id='Modules_by_category_Pathology'></span> | ||
| + | == Pathology == | ||
| + | * [[Documentation/Nightly/Extensions/SlicerPathology|SlicerPathology]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerPathology|SlicerPathology]] extension)</small> | ||
| + | <span id='Modules_by_category_Perk_Tutor'></span> | ||
| + | == Perk Tutor == | ||
| + | * [[Documentation/Nightly/Extensions/PerkTutor|PythonMetricsCalculator]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PerkTutor|PerkTutor]] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/TransformRecorder|TransformRecorder]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/PerkTutor|PerkTutor]] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/PerkEvaluator|PerkEvaluator]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/PerkTutor|PerkTutor]] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/WorkflowSegmentation|WorkflowSegmentation]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/PerkTutor|PerkTutor]] extension)</small> | ||
<span id='Modules_by_category_Plastimatch'></span> | <span id='Modules_by_category_Plastimatch'></span> | ||
== Plastimatch == | == Plastimatch == | ||
| − | * [[Documentation/Nightly/Modules/DicomSroExport| | + | * [[Documentation/Nightly/Modules/DicomSroExport|DicomSroExport]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small> |
| − | * [[Documentation/Nightly/Extensions/SlicerRT| | + | * [[Documentation/Nightly/Extensions/SlicerRT|PlmRegister]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small> |
<span id='Modules_by_category_Plastimatch_Registration'></span> | <span id='Modules_by_category_Plastimatch_Registration'></span> | ||
=== Registration === | === Registration === | ||
| − | * [[Documentation/Nightly/Extensions/SlicerRT| | + | * [[Documentation/Nightly/Extensions/SlicerRT|plastimatch_slicer_bspline]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small> |
| − | * [[Documentation/Nightly/Extensions/SlicerRT| | + | * [[Documentation/Nightly/Extensions/SlicerRT|plastimatch_slicer_landwarp]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small> |
<span id='Modules_by_category_Plastimatch_Utilities'></span> | <span id='Modules_by_category_Plastimatch_Utilities'></span> | ||
=== Utilities === | === Utilities === | ||
| − | * [[Documentation/Nightly/Extensions/SlicerRT| | + | * [[Documentation/Nightly/Extensions/SlicerRT|PlastimatchPy]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small> |
<span id='Modules_by_category_Quantification'></span> | <span id='Modules_by_category_Quantification'></span> | ||
== Quantification == | == Quantification == | ||
* [http://slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/DSC_MRI_Analysis DSCMRIAnalysis] <small>(cli, bundled in [http://slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/DSC_MRI_Analysis DSCMRIAnalysis] extension)</small> | * [http://slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/DSC_MRI_Analysis DSCMRIAnalysis] <small>(cli, bundled in [http://slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/DSC_MRI_Analysis DSCMRIAnalysis] extension)</small> | ||
| − | * [[Documentation/Nightly/Extensions/PET-IndiC| | + | * [[Documentation/Nightly/Modules/PETLiverUptakeMeasurement|PETLiverUptakeMeasurement]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/PETLiverUptakeMeasurement|PETLiverUptakeMeasurement]] extension)</small> |
| − | * [[Documentation/Nightly/ | + | * [[Documentation/Nightly/Extensions/PET-IndiC|PETIndiC]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PET-IndiC|PET-IndiC]] extension)</small> |
| − | * [[Documentation/Nightly/Modules/HeterogeneityCAD| | + | * [[Documentation/Nightly/Modules/Q3DC|Q3DC]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/Q3DC|Q3DC]] extension)</small> |
| − | * [[Documentation/Nightly/Modules/QuantitativeIndicesCLI| | + | * [[Documentation/Nightly/Modules/HeterogeneityCAD|HeterogeneityCAD]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/OpenCAD|OpenCAD]] extension)</small> |
| − | * [[Documentation/Nightly/Modules/PETStandardUptakeValueComputation| | + | * [[Documentation/Nightly/Modules/ShapeQuantifier|ShapeQuantifier]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/ShapeQuantifier|ShapeQuantifier]] extension)</small> |
| − | * [[Documentation/Nightly/Modules/SUVFactorCalculator| | + | * [[Documentation/Nightly/Modules/QuantitativeIndicesCLI|QuantitativeIndicesCLI]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/PET-IndiC|PET-IndiC]] extension)</small> |
| − | * [[Documentation/Nightly/Modules/SpinalCurvatureMeasurement| | + | * [[Documentation/Nightly/Modules/PETStandardUptakeValueComputation|PETStandardUptakeValueComputation]] <small>(cli, built-in)</small> |
| − | * [[Documentation/Nightly/Modules/QuantitativeIndicesTool| | + | * [[Documentation/Nightly/Modules/SUVFactorCalculator|SUVFactorCalculator]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/PETDICOM|PETDICOMExtension]] extension)</small> |
| − | * [[Documentation/Nightly/Modules/LabelStatistics| | + | * [[Documentation/Nightly/Modules/SpinalCurvatureMeasurement|SpinalCurvatureMeasurement]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/Scoliosis|Scoliosis]] extension)</small> |
| − | * [[Documentation/Nightly/Modules/DWModeling|DWModeling]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerProstate| | + | * [[Documentation/Nightly/Modules/QuantitativeIndicesTool|QuantitativeIndicesTool]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PET-IndiC|PET-IndiC]] extension)</small> |
| − | * | + | * SegmentStatistics <small>(scripted, built-in)</small> |
| − | * [[Documentation/Nightly/Modules/PkModeling| | + | * [[Documentation/Nightly/Modules/LabelStatistics|LabelStatistics]] <small>(scripted, built-in)</small> |
| − | * [[Documentation/Nightly/Extensions/LongitudinalPETCT| | + | * [[Documentation/Nightly/Modules/MeshStatistics|MeshStatistics]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/MeshStatistics|MeshStatisticsExtension]] extension)</small> |
| − | * [[Documentation/Nightly/Modules/DataProbe| | + | * [[Documentation/Nightly/Modules/DWModeling|DWModeling]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerProstate|SlicerProstate]] extension)</small> |
| + | * BRAINSLabelStats <small>(cli, built-in)</small> | ||
| + | * [[Documentation/Nightly/Modules/PkModeling|PkModeling]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/PkModeling|PkModeling]] extension)</small> | ||
| + | * [[Documentation/Nightly/Extensions/LongitudinalPETCT|PETSUVImageMaker]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/LongitudinalPETCT|LongitudinalPETCT]] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/DataProbe|DataProbe]] <small>(scripted, built-in)</small> | ||
| + | * [[Documentation/Nightly/Extensions/ModelToModelDistance|ModelToModelDistance]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/ModelToModelDistance|ModelToModelDistance]] extension)</small> | ||
* [[Documentation/Nightly/Modules/T1Mapping|T1Mapping]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/T1Mapping|T1Mapping]] extension)</small> | * [[Documentation/Nightly/Modules/T1Mapping|T1Mapping]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/T1Mapping|T1Mapping]] extension)</small> | ||
| − | * [ | + | * [[Documentation/Nightly/Modules/SlicerAstroDataProbe|SlicerAstroDataProbe]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small> |
| − | * [[Documentation/Nightly/Modules/dPetBrainQuantification| | + | * [[Documentation/Nightly/Modules/AnglePlanes|AnglePlanes]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/ShapeQuantifier|ShapeQuantifier]] extension)</small> |
| − | * [ | + | * [[Documentation/Nightly/Modules/dPetBrainQuantification|dPetBrainQuantification]] <small>(scripted, bundled in [http://gti-fing.github.io/SlicerPetSpectAnalysis PetSpectAnalysis] extension)</small> |
| − | * [[Documentation/Nightly/Modules/DiceComputation| | + | * [[Documentation/Nightly/Modules/PickAndPaint|PickAndPaint]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PickAndPaint|PickAndPaintExtension]] extension)</small> |
| + | * [[Documentation/Nightly/Extensions/QuantitativeReporting|QuantitativeReporting]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/QuantitativeReporting|QuantitativeReporting]] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/DiceComputation|DiceComputation]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/DiceComputation|DiceComputation]] extension)</small> | ||
<span id='Modules_by_category_Quantification_ChangeQuantification'></span> | <span id='Modules_by_category_Quantification_ChangeQuantification'></span> | ||
=== ChangeQuantification === | === ChangeQuantification === | ||
| − | * [[Documentation/Nightly/Modules/IntensityDifferenceMetric| | + | * [[Documentation/Nightly/Modules/IntensityDifferenceMetric|IntensityDifferenceMetric]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/ChangeTracker|ChangeTracker]] extension)</small> |
| + | <span id='Modules_by_category_Radiology'></span> | ||
| + | |||
| + | == Radiology == | ||
| + | * [[Documentation/Nightly/Extensions/SliceTracker|SliceTracker]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SliceTracker|SliceTracker]] extension)</small> | ||
| + | * [[Documentation/Nightly/Extensions/SliceTracker|SliceTrackerRegistration]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SliceTracker|SliceTracker]] extension)</small> | ||
| + | * [[Documentation/Nightly/Extensions/SliceTracker|SliceTrackerZFrameRegistration]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SliceTracker|SliceTracker]] extension)</small> | ||
<span id='Modules_by_category_Radiotherapy'></span> | <span id='Modules_by_category_Radiotherapy'></span> | ||
== Radiotherapy == | == Radiotherapy == | ||
| − | * [[Documentation/Nightly/Extensions/SlicerRT|Beams]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT| | + | * [[Documentation/Nightly/Extensions/SlicerRT|Beams]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small> |
| − | * [[Documentation/Nightly/Extensions/SlicerRT| | + | * [[Documentation/Nightly/Extensions/SlicerRT|DvhComparison]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small> |
| − | * [[Documentation/Nightly/Modules/ | + | * [[Documentation/Nightly/Modules/DoseVolumeHistogram|DoseVolumeHistogram]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small> |
| − | * [[Documentation/Nightly/ | + | * [[Documentation/Nightly/Extensions/SlicerRT|DicomRtImportExport]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small> |
| − | * [[Documentation/Nightly/ | + | * [[Documentation/Nightly/Modules/DoseAccumulation|DoseAccumulation]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small> |
| − | * [[Documentation/Nightly/ | + | * [[Documentation/Nightly/Extensions/SlicerRT|ExternalBeamPlanning]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small> |
| − | * [[Documentation/Nightly/Modules/SegmentComparison| | + | * [[Documentation/Nightly/Modules/SegmentComparison|SegmentComparison]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small> |
| − | * [[Documentation/Nightly/Extensions/SlicerRT| | + | * [[Documentation/Nightly/Extensions/SlicerRT|PlanarImage]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small> |
| − | * [[Documentation/Nightly/Modules/ | + | * [[Documentation/Nightly/Modules/Isodose|Isodose]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small> |
| − | * [[Documentation/Nightly/Modules/DoseComparison| | + | * [[Documentation/Nightly/Modules/DoseComparison|DoseComparison]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small> |
| − | * [[Documentation/Nightly/Modules/DicomSroImport| | + | * [[Documentation/Nightly/Modules/SegmentMorphology|SegmentMorphology]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small> |
| + | * [[Documentation/Nightly/Modules/DicomSroImport|DicomSroImport]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small> | ||
<span id='Modules_by_category_Registration'></span> | <span id='Modules_by_category_Registration'></span> | ||
== Registration == | == Registration == | ||
* [[Documentation/Nightly/Modules/Transforms|Transforms]] <small>(loadable, built-in)</small> | * [[Documentation/Nightly/Modules/Transforms|Transforms]] <small>(loadable, built-in)</small> | ||
* BRAINSResize <small>(cli, built-in)</small> | * BRAINSResize <small>(cli, built-in)</small> | ||
| − | * | + | * PerformMetricTest <small>(cli, built-in)</small> |
| − | * [[Documentation/Nightly/Modules/LandmarkRegistration| | + | * [[Documentation/Nightly/Modules/LandmarkRegistration|LandmarkRegistration]] <small>(scripted, built-in)</small> |
* [[Documentation/Nightly/Extensions/PBNRR|PBNRR]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/PBNRR|PBNRR]] extension)</small> | * [[Documentation/Nightly/Extensions/PBNRR|PBNRR]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/PBNRR|PBNRR]] extension)</small> | ||
* [[Documentation/Nightly/Modules/BRAINSResample|BRAINSResample]] <small>(cli, built-in)</small> | * [[Documentation/Nightly/Modules/BRAINSResample|BRAINSResample]] <small>(cli, built-in)</small> | ||
| Line 468: | Line 568: | ||
<span id='Modules_by_category_Registration_CMF_Registration'></span> | <span id='Modules_by_category_Registration_CMF_Registration'></span> | ||
=== CMF Registration === | === CMF Registration === | ||
| − | * [[Documentation/Nightly/Extensions/CMFreg| | + | * [[Documentation/Nightly/Extensions/CMFreg|ApplyMatrix]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small> |
| − | * [[Documentation/Nightly/Modules/LabelAddition| | + | * [[Documentation/Nightly/Modules/LabelExtraction|LabelExtraction]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small> |
| + | * [[Documentation/Nightly/Modules/LabelAddition|LabelAddition]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small> | ||
* [[Documentation/Nightly/Modules/Downsize|Downsize]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small> | * [[Documentation/Nightly/Modules/Downsize|Downsize]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small> | ||
| − | * [[Documentation/Nightly/Modules/SurfaceRegistration| | + | * [[Documentation/Nightly/Modules/SurfaceRegistration|SurfaceRegistration]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small> |
| − | |||
<span id='Modules_by_category_CMF_Registration_Voxelbase_Registration'></span> | <span id='Modules_by_category_CMF_Registration_Voxelbase_Registration'></span> | ||
==== Voxelbase Registration ==== | ==== Voxelbase Registration ==== | ||
| − | * [[Documentation/Nightly/Modules/NonGrowing| | + | * [[Documentation/Nightly/Modules/NonGrowing|NonGrowing]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small> |
* [[Documentation/Nightly/Modules/Growing|Growing]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small> | * [[Documentation/Nightly/Modules/Growing|Growing]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small> | ||
| − | * [[Documentation/Nightly/Modules/MaskCreation| | + | * [[Documentation/Nightly/Modules/MaskCreation|MaskCreation]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small> |
<span id='Modules_by_category_Registration_Label_Registration'></span> | <span id='Modules_by_category_Registration_Label_Registration'></span> | ||
=== Label Registration === | === Label Registration === | ||
| − | * [[Documentation/Nightly/Modules/DistanceMapBasedRegistration| | + | * [[Documentation/Nightly/Modules/DistanceMapBasedRegistration|DistanceMapBasedRegistration]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerProstate|SlicerProstate]] extension)</small> |
<span id='Modules_by_category_Registration_Specialized'></span> | <span id='Modules_by_category_Registration_Specialized'></span> | ||
=== Specialized === | === Specialized === | ||
* [[Documentation/Nightly/Modules/ACPCTransform|ACPCTransform]] <small>(cli, built-in)</small> | * [[Documentation/Nightly/Modules/ACPCTransform|ACPCTransform]] <small>(cli, built-in)</small> | ||
| − | * [[Documentation/Nightly/Modules/FiducialRegistration| | + | * [[Documentation/Nightly/Modules/FiducialRegistration|FiducialRegistration]] <small>(cli, built-in)</small> |
| − | * [[Documentation/Nightly/Modules/BRAINSDemonWarp| | + | * [[Documentation/Nightly/Modules/BRAINSDemonWarp|BRAINSDemonWarp]] <small>(cli, built-in)</small> |
* [[Documentation/Nightly/Modules/Reformat|Reformat]] <small>(loadable, built-in)</small> | * [[Documentation/Nightly/Modules/Reformat|Reformat]] <small>(loadable, built-in)</small> | ||
| − | * | + | * [[Documentation/Nightly/Extensions/ScatteredTransform|ScatteredTransform]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/ScatteredTransform|ScatteredTransform]] extension)</small> |
| + | * VBRAINSDemonWarp <small>(cli, built-in)</small> | ||
<span id='Modules_by_category_Segmentation'></span> | <span id='Modules_by_category_Segmentation'></span> | ||
== Segmentation == | == Segmentation == | ||
| − | * | + | * [[Documentation/Nightly/Modules/ROBEXBrainExtraction|ROBEXBrainExtraction]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/ROBEXBrainExtraction|ROBEXBrainExtraction]] extension)</small> |
| − | * [[Documentation/Nightly/Extensions/VolumeClip| | + | * EMSegmentQuick <small>(loadable, built-in)</small> |
| + | * [[Documentation/Nightly/Extensions/VolumeClip|VolumeClipWithModel]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/VolumeClip|VolumeClip]] extension)</small> | ||
* [http://www.nitrc.org/projects/abc ABC] <small>(cli, bundled in [http://www.nitrc.org/projects/abc ABC] extension)</small> | * [http://www.nitrc.org/projects/abc ABC] <small>(cli, bundled in [http://www.nitrc.org/projects/abc ABC] extension)</small> | ||
| − | * [ | + | * [[Documentation/Nightly/Extensions/SliceTracker|VolumeClipToLabel]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SliceTracker|SliceTracker]] extension)</small> |
| − | * [[Documentation/Nightly/Modules/LAScarSegmenter| | + | * [[Documentation/Nightly/Extensions/AirwaySegmentation|AirwaySegmentationCLI]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/AirwaySegmentation|AirwaySegmentation]] extension)</small> |
| − | * [[Documentation/Nightly/ | + | * [[Documentation/Nightly/Modules/LAScarSegmenter|LAScarSegmenter]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/LAScarSegmenter|LAScarSegmenter]] extension)</small> |
| − | * [[Documentation/Nightly/Modules/ | + | * [[Documentation/Nightly/Modules/SegmentEditor|SegmentEditor]] <small>(scripted, built-in)</small> |
| − | * [[Documentation/Nightly/Modules/ | + | * [[Documentation/Nightly/Modules/AirwaySegmentation|AirwaySegmentation]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/AirwaySegmentation|AirwaySegmentation]] extension)</small> |
| − | * [[Documentation/Nightly/Extensions/VolumeClip| | + | * [[Documentation/Nightly/Modules/SkullStripper|SkullStripper]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/SkullStripper|SkullStripper]] extension)</small> |
| − | * [[Documentation/Nightly/Modules/SegmentCAD| | + | * [https://github.com/lassoan/SlicerSegmentEditorExtraEffects SegmentEditorFastMarching] <small>(scripted, bundled in [https://github.com/lassoan/SlicerSegmentEditorExtraEffects SegmentEditorExtraEffects] extension)</small> |
| − | * [[Documentation/Nightly/Modules/SwissSkullStripper| | + | * [[Documentation/Nightly/Modules/SobolevSegmenter|SobolevSegmenter]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/SobolevSegmenter|SobolevSegmenter]] extension)</small> |
| + | * [[Documentation/Nightly/Extensions/VolumeClip|VolumeClipWithRoi]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/VolumeClip|VolumeClip]] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/SegmentCAD|SegmentCAD]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/OpenCAD|OpenCAD]] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/SwissSkullStripper|SwissSkullStripper]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/SwissSkullStripper|SwissSkullStripper]] extension)</small> | ||
| + | * [https://github.com/lassoan/SlicerSegmentEditorExtraEffects SegmentEditorFloodFilling] <small>(scripted, bundled in [https://github.com/lassoan/SlicerSegmentEditorExtraEffects SegmentEditorExtraEffects] extension)</small> | ||
* [https://github.com/Tomnl/Slicer-Wasp Wasp] <small>(scripted, bundled in [https://github.com/Tomnl/Slicer-Wasp Wasp] extension)</small> | * [https://github.com/Tomnl/Slicer-Wasp Wasp] <small>(scripted, bundled in [https://github.com/Tomnl/Slicer-Wasp Wasp] extension)</small> | ||
* [[Documentation/Nightly/Modules/Editor|Editor]] <small>(scripted, built-in)</small> | * [[Documentation/Nightly/Modules/Editor|Editor]] <small>(scripted, built-in)</small> | ||
| − | * [[Documentation/Nightly/Modules/SimpleRegionGrowingSegmentation| | + | * [[Documentation/Nightly/Modules/SimpleRegionGrowingSegmentation|SimpleRegionGrowingSegmentation]] <small>(cli, built-in)</small> |
* [[Documentation/Nightly/Modules/EMSegment|EMSegment]] <small>(loadable, built-in)</small> | * [[Documentation/Nightly/Modules/EMSegment|EMSegment]] <small>(loadable, built-in)</small> | ||
| − | * [[Documentation/Nightly/Extensions/IntensitySegmenter| | + | * [[Documentation/Nightly/Extensions/QuantitativeReporting|QuantitativeReporting]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/QuantitativeReporting|QuantitativeReporting]] extension)</small> |
| + | * [[Documentation/Nightly/Extensions/IntensitySegmenter|IntensitySegmenter]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/IntensitySegmenter|IntensitySegmenter]] extension)</small> | ||
| + | * [https://github.com/lassoan/SlicerSegmentEditorExtraEffects SegmentEditorWatershed] <small>(scripted, bundled in [https://github.com/lassoan/SlicerSegmentEditorExtraEffects SegmentEditorExtraEffects] extension)</small> | ||
<span id='Modules_by_category_Segmentation_Specialized'></span> | <span id='Modules_by_category_Segmentation_Specialized'></span> | ||
=== Specialized === | === Specialized === | ||
* BRAINSROIAuto <small>(cli, built-in)</small> | * BRAINSROIAuto <small>(cli, built-in)</small> | ||
| − | * [[Documentation/Nightly/Modules/RobustStatisticsSegmenter| | + | * [[Documentation/Nightly/Modules/RobustStatisticsSegmenter|RobustStatisticsSegmenter]] <small>(cli, built-in)</small> |
| − | * | + | * EMSegmentCommandLine <small>(cli, built-in)</small> |
<span id='Modules_by_category_Sequences'></span> | <span id='Modules_by_category_Sequences'></span> | ||
== Sequences == | == Sequences == | ||
* [[Documentation/Nightly/Extensions/Sequences|Sequences]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/Sequences|Sequences]] extension)</small> | * [[Documentation/Nightly/Extensions/Sequences|Sequences]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/Sequences|Sequences]] extension)</small> | ||
| − | * [[Documentation/Nightly/Extensions/Sequences| | + | * [[Documentation/Nightly/Extensions/Sequences|SequenceBrowser]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/Sequences|Sequences]] extension)</small> |
| − | * [[Documentation/Nightly/Extensions/Sequences| | + | * [[Documentation/Nightly/Extensions/Sequences|MetafileImporter]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/Sequences|Sequences]] extension)</small> |
| − | |||
| − | |||
| − | |||
<span id='Modules_by_category_Slicelets'></span> | <span id='Modules_by_category_Slicelets'></span> | ||
== Slicelets == | == Slicelets == | ||
| − | * [ | + | * [[Documentation/Nightly/Modules/FilmDosimetry|FilmDosimetryAnalysis]] <small>(scripted, bundled in [[Documentation/Nightly/Modules/FilmDosimetry|FilmDosimetryAnalysis]] extension)</small> |
| − | * [ | + | * [[Documentation/Nightly/Modules/GelDosimetry|GelDosimetryAnalysis]] <small>(scripted, bundled in [[Documentation/Nightly/Modules/GelDosimetry|GelDosimetryAnalysis]] extension)</small> |
| + | * [[Documentation/Nightly/Modules/GelDosimetry|GelDosimetryAnalysisAlgo]] <small>(loadable, bundled in [[Documentation/Nightly/Modules/GelDosimetry|GelDosimetryAnalysis]] extension)</small> | ||
| + | <span id='Modules_by_category_SlicerProstate'></span> | ||
| + | == SlicerProstate == | ||
| + | * [[Documentation/Nightly/Extensions/SliceTracker|ZFrameCalibration]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/SliceTracker|SliceTracker]] extension)</small> | ||
<span id='Modules_by_category_Surface_Models'></span> | <span id='Modules_by_category_Surface_Models'></span> | ||
== Surface Models == | == Surface Models == | ||
| − | * [[Documentation/Nightly/Modules/SurfaceToolbox| | + | * [[Documentation/Nightly/Modules/SurfaceToolbox|SurfaceToolbox]] <small>(scripted, built-in)</small> |
| − | * [[Documentation/Nightly/Modules/GrayscaleModelMaker| | + | * [[Documentation/Nightly/Modules/GrayscaleModelMaker|GrayscaleModelMaker]] <small>(cli, built-in)</small> |
| − | * [[Documentation/Nightly/Modules/ModelMaker| | + | * [[Documentation/Nightly/Modules/ModelMaker|ModelMaker]] <small>(cli, built-in)</small> |
| − | * [[Documentation/Nightly/Modules/ModelToLabelMap| | + | * [[Documentation/Nightly/Modules/ModelToLabelMap|ModelToLabelMap]] <small>(cli, built-in)</small> |
| − | * [[Documentation/Nightly/Modules/MergeModels| | + | * [[Documentation/Nightly/Modules/MergeModels|MergeModels]] <small>(cli, built-in)</small> |
| − | * [[Documentation/Nightly/ | + | * [[Documentation/Nightly/Modules/EasyClip|EasyClip]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/EasyClip|EasyClip]] extension)</small> |
| − | * [[Documentation/Nightly/Modules/LabelMapSmoothing| | + | * [[Documentation/Nightly/Modules/LabelMapSmoothing|LabelMapSmoothing]] <small>(cli, built-in)</small> |
| − | * [[Documentation/Nightly/Extensions/MeshToLabelMap| | + | * [[Documentation/Nightly/Extensions/MeshToLabelMap|MeshToLabelMap]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/MeshToLabelMap|MeshToLabelMap]] extension)</small> |
| − | * [[Documentation/Nightly/Modules/ProbeVolumeWithModel| | + | * [[Documentation/Nightly/Modules/ProbeVolumeWithModel|ProbeVolumeWithModel]] <small>(cli, built-in)</small> |
| + | * [[Documentation/Nightly/Extensions/SlicerIGT|TextureModel]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small> | ||
<span id='Modules_by_category_TestCases'></span> | <span id='Modules_by_category_TestCases'></span> | ||
== TestCases == | == TestCases == | ||
| − | * | + | * SEGExporterSelfTest |
<span id='Modules_by_category_Testing'></span> | <span id='Modules_by_category_Testing'></span> | ||
== Testing == | == Testing == | ||
* CLI4Test | * CLI4Test | ||
| − | * | + | * ThresholdThreadingTest |
| − | * [[Documentation/Nightly/Extensions/Scoliosis| | + | * [[Documentation/Nightly/Extensions/Scoliosis|ScoliosisMonitoring]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/Scoliosis|Scoliosis]] extension)</small> |
| − | * | + | * SlicerMRBSaveRestoreCheckPathsTest |
* CLIROITest <small>(cli, built-in)</small> | * CLIROITest <small>(cli, built-in)</small> | ||
| − | * | + | * PerformanceTests |
| − | * | + | * SlicerMRBMultipleSaveRestoreTest |
| − | * | + | * SlicerMRBTest |
| − | * | + | * SEGExporterSelfTest |
| − | * | + | * SelfTests |
| − | * | + | * SlicerMRBMultipleSaveRestoreLoopTest |
<span id='Modules_by_category_Testing_IGT_Tests'></span> | <span id='Modules_by_category_Testing_IGT_Tests'></span> | ||
=== IGT Tests === | === IGT Tests === | ||
| − | * | + | * BreachWarningSelfTest |
| − | * | + | * WatchdogSelfTest |
<span id='Modules_by_category_Testing_SlicerRT_Tests'></span> | <span id='Modules_by_category_Testing_SlicerRT_Tests'></span> | ||
=== SlicerRT Tests === | === SlicerRT Tests === | ||
| − | * | + | * IGRTWorkflow_SelfTest |
| − | + | * [[Documentation/Nightly/Extensions/SlicerRT|BatchStructureSetConversion]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small> | |
| − | * [[Documentation/Nightly/Extensions/SlicerRT| | ||
<span id='Modules_by_category_Testing_TestCases'></span> | <span id='Modules_by_category_Testing_TestCases'></span> | ||
=== TestCases === | === TestCases === | ||
| − | * | + | * AtlasTests |
| − | * | + | * AddStorableDataAfterSceneViewTest |
| − | * | + | * test_tractography_display |
| − | * | + | * SlicerTransformInteractionTest1 |
| − | * | + | * RSNAQuantTutorial |
| − | * | + | * NeurosurgicalPlanningTutorialMarkupsSelfTest |
| − | * | + | * ChangeTrackerSelfTest |
| − | * | + | * FiducialLayoutSwitchBug1914 |
| + | * GraphCutSegmentSelfTest | ||
| + | * SlicerBoundsTest | ||
| + | * UtilTest | ||
* Charting <small>(scripted, built-in)</small> | * Charting <small>(scripted, built-in)</small> | ||
| − | * [http://brainsia.github.io/CardiacAgatstonMeasures/ | + | * [http://brainsia.github.io/CardiacAgatstonMeasures/ CardiacAgatstonMeasures] <small>(scripted, bundled in [http://brainsia.github.io/CardiacAgatstonMeasures/ CardiacAgatstonMeasures] extension)</small> |
| − | * | + | * fiber_visibility_crash2438 |
| − | * | + | * RSNAVisTutorial |
* JRC2013Vis | * JRC2013Vis | ||
| − | * | + | * AddManyMarkupsFiducialTest |
| + | * CropVolumeSelfTest | ||
| + | * SliceLinkLogic <small>(scripted, built-in)</small> | ||
| + | * VolumeRenderingSceneClose <small>(scripted, built-in)</small> | ||
| + | * slicerCloseCrashBug2590 | ||
| + | * CLIEventTest | ||
| + | * [[Documentation/Nightly/Extensions/SlicerDMRI|NsgPlanTracto]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small> | ||
| + | * MarkupsWidgetsSelfTest | ||
| + | * TablesSelfTest | ||
| + | * SlicerOrientationSelectorTest | ||
| + | * MarkupsInViewsSelfTest | ||
| + | * TwoCLIsInParallelTest | ||
| + | * SubjectHierarchyCorePluginsSelfTest | ||
| + | * SubjectHierarchyGenericSelfTest | ||
| + | * ScenePerformance <small>(scripted, built-in)</small> | ||
| + | * MarkupsInCompareViewersSelfTest | ||
| + | * sceneImport2428 | ||
| + | * RSNA2012ProstateDemo | ||
| + | * DTINotReproducibleIssue3977 | ||
| + | * TwoCLIsInARowTest | ||
| + | * ColorsScalarBarSelfTest | ||
| + | * BRAINSFitRigidRegistrationCrashIssue4139 | ||
* Slicer4Minute <small>(scripted, built-in)</small> | * Slicer4Minute <small>(scripted, built-in)</small> | ||
| − | * | + | * ViewControllersSliceInterpolationBug1926 |
| − | * | + | <span id='Modules_by_category_Ultrasound'></span> |
| − | * | + | == Ultrasound == |
| − | * | + | * [https://kitwaremedical.github.io/SlicerITKUltrasoundDoc/ ScanConvertCurvilinearArray] <small>(cli, bundled in [https://kitwaremedical.github.io/SlicerITKUltrasoundDoc/ SlicerITKUltrasound] extension)</small> |
| − | + | * [https://kitwaremedical.github.io/SlicerITKUltrasoundDoc/ ScanConvertPhasedArray3D] <small>(cli, bundled in [https://kitwaremedical.github.io/SlicerITKUltrasoundDoc/ SlicerITKUltrasound] extension)</small> | |
| − | + | * [https://kitwaremedical.github.io/SlicerITKUltrasoundDoc/ ScanConvertSliceSeries] <small>(cli, bundled in [https://kitwaremedical.github.io/SlicerITKUltrasoundDoc/ SlicerITKUltrasound] extension)</small> | |
| − | * | + | <span id='Modules_by_category_Uncategorized'></span> |
| − | * | + | == Uncategorized == |
| − | + | * [[Documentation/Nightly/Extensions/ShapeQuantifier|ShapeQuantifierCore]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/ShapeQuantifier|ShapeQuantifier]] extension)</small> | |
| − | + | * [[Documentation/Nightly/Extensions/DatabaseInteractor|DatabaseInteractorLib]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/DatabaseInteractor|DatabaseInteractor]] extension)</small> | |
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
<span id='Modules_by_category_Utilities'></span> | <span id='Modules_by_category_Utilities'></span> | ||
== Utilities == | == Utilities == | ||
| − | * [[Documentation/Nightly/Modules/DataStore| | + | * [[Documentation/Nightly/Modules/ScreenCapture|ScreenCapture]] <small>(scripted, built-in)</small> |
| − | * | + | * [[Documentation/Nightly/Modules/DataStore|DataStore]] <small>(loadable, built-in)</small> |
| − | * | + | * DICOMPatcher <small>(scripted, built-in)</small> |
| + | * BRAINSStripRotation <small>(cli, built-in)</small> | ||
| + | * EMSegmentTransformToNewFormat <small>(cli, built-in)</small> | ||
<span id='Modules_by_category_Utilities_BRAINS'></span> | <span id='Modules_by_category_Utilities_BRAINS'></span> | ||
=== BRAINS === | === BRAINS === | ||
| − | * | + | * BRAINSTransformConvert <small>(cli, built-in)</small> |
<span id='Modules_by_category_Vascular_Modeling_Toolkit'></span> | <span id='Modules_by_category_Vascular_Modeling_Toolkit'></span> | ||
== Vascular Modeling Toolkit == | == Vascular Modeling Toolkit == | ||
| − | * [http://slicer.vmtk.org/ | + | * [http://slicer.vmtk.org/ CenterlineComputation] <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small> |
| − | * [http://slicer.vmtk.org/ | + | * [http://slicer.vmtk.org/ LevelSetSegmentation] <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small> |
| − | * [http://slicer.vmtk.org/ | + | * [http://slicer.vmtk.org/ VesselnessFiltering] <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small> |
| + | <span id='Modules_by_category_Virtual_Reality'></span> | ||
| + | == Virtual Reality == | ||
| + | * [[Documentation/Nightly/Modules/VirtualReality|VirtualReality]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerVirtualReality|SlicerVirtualReality]] extension)</small> | ||
| + | <span id='Modules_by_category_Web_System_Tools'></span> | ||
| + | == Web System Tools == | ||
| + | * [[Documentation/Nightly/Modules/DatabaseInteractor|DatabaseInteractor]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/DatabaseInteractor|DatabaseInteractor]] extension)</small> | ||
<span id='Modules_by_category_Wizards'></span> | <span id='Modules_by_category_Wizards'></span> | ||
== Wizards == | == Wizards == | ||
| − | * [[Documentation/Nightly/Modules/CompareVolumes| | + | * [[Documentation/Nightly/Modules/CompareVolumes|CompareVolumes]] <small>(scripted, built-in)</small> |
| − | * [[Documentation/Nightly/Modules/ChangeTracker| | + | * [[Documentation/Nightly/Modules/ChangeTracker|ChangeTracker]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/ChangeTracker|ChangeTracker]] extension)</small> |
| + | <span id='Modules_by_category_XNATSlicer'></span> | ||
| + | == XNATSlicer == | ||
| + | * [[Documentation/Nightly/Extensions/XNATSlicer|XnatSlicer]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/XNATSlicer|XNATSlicer]] extension)</small> | ||
| + | |||
= Modules by name = | = Modules by name = | ||
| − | + | 367 modules: | |
* [http://www.nitrc.org/projects/abc ABC] <small>(cli, bundled in [http://www.nitrc.org/projects/abc ABC] extension)</small> | * [http://www.nitrc.org/projects/abc ABC] <small>(cli, bundled in [http://www.nitrc.org/projects/abc ABC] extension)</small> | ||
* [[Documentation/Nightly/Modules/ACPCTransform|ACPCTransform]] <small>(cli, built-in)</small> | * [[Documentation/Nightly/Modules/ACPCTransform|ACPCTransform]] <small>(cli, built-in)</small> | ||
| − | * [[Documentation/Nightly/Modules/AddScalarVolumes| | + | * [[Documentation/Nightly/Modules/AddScalarVolumes|AddScalarVolumes]] <small>(cli, built-in)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org AirwayInspector] <small>(loadable, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [[Documentation/Nightly/Modules/AirwaySegmentation| | + | * [[Documentation/Nightly/Modules/AirwaySegmentation|AirwaySegmentation]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/AirwaySegmentation|AirwaySegmentation]] extension)</small> |
| − | * [ | + | * [[Documentation/Nightly/Extensions/AirwaySegmentation|AirwaySegmentationCLI]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/AirwaySegmentation|AirwaySegmentation]] extension)</small> |
| − | * [ | + | * [[Documentation/Nightly/Modules/AnglePlanes|AnglePlanes]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/ShapeQuantifier|ShapeQuantifier]] extension)</small> |
* [[Documentation/Nightly/Modules/Annotations|Annotations]] <small>(loadable, built-in)</small> | * [[Documentation/Nightly/Modules/Annotations|Annotations]] <small>(loadable, built-in)</small> | ||
| − | * [[Documentation/Nightly/Extensions/CMFreg| | + | * [[Documentation/Nightly/Extensions/CMFreg|ApplyMatrix]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small> |
| − | * [[Documentation/Nightly/Extensions/SlicerRT|Beams]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT| | + | * [[Documentation/Nightly/Modules/AstroMasking|AstroMasking]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small> |
| − | * [[Documentation/Nightly/Extensions/IASEM| | + | * [[Documentation/Nightly/Modules/AstroModeling|AstroModeling]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small> |
| − | * [[Documentation/Nightly/Modules/BodyCentricCubicMesh| | + | * [[Documentation/Nightly/Modules/AstroMomentMaps|AstroMomentMaps]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small> |
| − | * [[Documentation/Nightly/Modules/BRAINSDemonWarp| | + | * [[Documentation/Nightly/Modules/AstroProfiles|AstroProfiles]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small> |
| + | * [[Documentation/Nightly/Modules/AstroPVDiagram|AstroPVDiagram]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/AstroPVSlice|AstroPVSlice]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/AstroReproject|AstroReproject]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small> | ||
| + | * [[Documentation/Nightly/Extensions/SlicerAstro|AstroSampleData]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/AstroSmoothing|AstroSmoothing]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/AstroStatistics|AstroStatistics]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/AstroVolume|AstroVolume]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small> | ||
| + | * [[Documentation/Nightly/Extensions/SlicerAstro|AstroWelcome]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small> | ||
| + | * [[Documentation/Nightly/Extensions/SlicerRT|Beams]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small> | ||
| + | * [[Documentation/Nightly/Extensions/IASEM|BinShrink]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small> | ||
| + | * [[Documentation/Nightly/Extensions/OpenCVExample|BlendVectorVolumes]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/OpenCVExample|OpenCVExample]] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/BodyCentricCubicMesh|BodyCentricCubicMesh]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/CBC_3D_I2MConversion|CBC_3D_I2MConversion]] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/BRAINSDemonWarp|BRAINSDemonWarp]] <small>(cli, built-in)</small> | ||
* BRAINSDWICleanup <small>(cli, built-in)</small> | * BRAINSDWICleanup <small>(cli, built-in)</small> | ||
* [[Documentation/Nightly/Modules/BRAINSFit|BRAINSFit]] <small>(cli, built-in)</small> | * [[Documentation/Nightly/Modules/BRAINSFit|BRAINSFit]] <small>(cli, built-in)</small> | ||
| − | * | + | * BRAINSLabelStats <small>(cli, built-in)</small> |
* [[Documentation/Nightly/Modules/BRAINSResample|BRAINSResample]] <small>(cli, built-in)</small> | * [[Documentation/Nightly/Modules/BRAINSResample|BRAINSResample]] <small>(cli, built-in)</small> | ||
* BRAINSResize <small>(cli, built-in)</small> | * BRAINSResize <small>(cli, built-in)</small> | ||
* BRAINSROIAuto <small>(cli, built-in)</small> | * BRAINSROIAuto <small>(cli, built-in)</small> | ||
| − | * | + | * BRAINSStripRotation <small>(cli, built-in)</small> |
| − | * | + | * BRAINSTransformConvert <small>(cli, built-in)</small> |
| − | * [[Documentation/Nightly/Extensions/SlicerIGT| | + | * [[Documentation/Nightly/Extensions/SlicerIGT|BreachWarning]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small> |
| − | * [ | + | * [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|CarreraSlice]] <small>(loadable, bundled in [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|CarreraSlice]] extension)</small> |
| − | * [http:// | + | * [[Documentation/Nightly/Modules/CastScalarVolume|CastScalarVolume]] <small>(cli, built-in)</small> |
| − | * [[Documentation/Nightly/Modules/ | + | * [http://slicer.vmtk.org/ CenterlineComputation] <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small> |
| − | * [http:// | + | * [[Documentation/Nightly/Modules/ChangeTracker|ChangeTracker]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/ChangeTracker|ChangeTracker]] extension)</small> |
| − | * [[ | + | * [[Documentation/Nightly/Modules/CheckerBoardFilter|CheckerBoardFilter]] <small>(cli, built-in)</small> |
| − | * [ | + | * [http://www.chestimagingplatform.org CIP_] <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org CIP_BodyComposition] <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org CIP_CalciumScoring] <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org CIP_Common] <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org CIP_InteractiveLobeSegmentation] <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org CIP_LesionModel] <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org CIP_MIPViewer] <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org CIP_PAARatio] <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org CIP_ParenchymaAnalysis] <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [[Documentation/Nightly/Extensions/CleaverExtension| | + | * [http://www.chestimagingplatform.org CIP_ParenchymaSubtypeTraining] <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://capulet.med.utah.edu/namic/cmrslicer/ | + | * [http://www.chestimagingplatform.org CIP_PointsLabelling] <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://capulet.med.utah.edu/namic/cmrslicer/ | + | * [http://www.chestimagingplatform.org CIP_TracheaStentPlanning] <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://capulet.med.utah.edu/namic/cmrslicer/ | + | * [http://www.chestimagingplatform.org ClassifyFissureParticles] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://capulet.med.utah.edu/namic/cmrslicer/ | + | * [[Documentation/Nightly/Extensions/CleaverExtension|CleaverCLI]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/CleaverExtension|CleaverExtension]] extension)</small> |
| − | * [http://capulet.med.utah.edu/namic/cmrslicer/ | + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkitAutomaticLeftAtrialScar] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac_MRI_Toolkit] extension)</small> |
| − | * [http://capulet.med.utah.edu/namic/cmrslicer/ | + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkitAxialDilate] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac_MRI_Toolkit] extension)</small> |
| − | * [http://capulet.med.utah.edu/namic/cmrslicer/ | + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkitBooleanREMOVEFilter] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac_MRI_Toolkit] extension)</small> |
| − | * [http://capulet.med.utah.edu/namic/cmrslicer/ | + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkitConnectedThresholdFilter] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac_MRI_Toolkit] extension)</small> |
| − | * [http://capulet.med.utah.edu/namic/cmrslicer/ | + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkitInhomogeneityCorrection] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac_MRI_Toolkit] extension)</small> |
| − | * [http://capulet.med.utah.edu/namic/cmrslicer/ | + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkitIsolatedConnectedFilter] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac_MRI_Toolkit] extension)</small> |
| − | * [http://capulet.med.utah.edu/namic/cmrslicer/ | + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkitLASegmentationGraphCuts] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac_MRI_Toolkit] extension)</small> |
| − | * [[Documentation/Nightly/Modules/CollectFiducials| | + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkitPVAntrumCut] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac_MRI_Toolkit] extension)</small> |
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkitRegistration] <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac_MRI_Toolkit] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkitRegistrationBRAINSFit] <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac_MRI_Toolkit] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkitWizard] <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac_MRI_Toolkit] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/CollectFiducials|CollectFiducials]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small> | ||
* [[Documentation/Nightly/Modules/Colors|Colors]] <small>(loadable, built-in)</small> | * [[Documentation/Nightly/Modules/Colors|Colors]] <small>(loadable, built-in)</small> | ||
| − | * [[Documentation/Nightly/Modules/CompareVolumes| | + | * [[Documentation/Nightly/Modules/CompareVolumes|CompareVolumes]] <small>(scripted, built-in)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org ComputeCrossSectionalArea] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org ComputeDistanceMap] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org ComputeFeatureStrength] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org ComputeFissureFeatureVectors] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org ComputeIntensityStatistics] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org ConvertChestRegionChestTypeToLabelMapValue] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org ConvertDicom] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org ConvertLabelMapValueToChestRegionChestType] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [[Documentation/Nightly/Extensions/UKFTractography| | + | * [[Documentation/Nightly/Extensions/UKFTractography|ConvertVTK]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/UKFTractography|UKFTractography]] extension)</small> |
| − | * [[Documentation/Nightly/Modules/CornerAnnotation| | + | * [[Documentation/Nightly/Modules/CornerAnnotation|CornerAnnotation]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/CornerAnnotation|CornerAnnotation]] extension)</small> |
| − | * [[Documentation/Nightly/Modules/CreateDICOMSeries| | + | * [[Documentation/Nightly/Modules/CreateDICOMSeries|CreateDICOMSeries]] <small>(cli, built-in)</small> |
| − | * [[Documentation/Nightly/Extensions/SlicerIGT| | + | * [[Documentation/Nightly/Extensions/SlicerIGT|CreateModels]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org CropLung] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [[Documentation/Nightly/Modules/CropVolume| | + | * [[Documentation/Nightly/Modules/CropVolume|CropVolume]] <small>(loadable, built-in)</small> |
| − | * [[Documentation/Nightly/Modules/CurvatureAnisotropicDiffusion| | + | * [[Documentation/Nightly/Modules/CurvatureAnisotropicDiffusion|CurvatureAnisotropicDiffusion]] <small>(cli, built-in)</small> |
| − | * [[Documentation/Nightly/Extensions/CurveMaker| | + | * [[Documentation/Nightly/Extensions/CurveMaker|CurveMaker]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/CurveMaker|CurveMaker]] extension)</small> |
* [[Documentation/Nightly/Modules/Data|Data]] <small>(loadable, built-in)</small> | * [[Documentation/Nightly/Modules/Data|Data]] <small>(loadable, built-in)</small> | ||
| − | * [[Documentation/Nightly/Modules/DataProbe| | + | * [[Documentation/Nightly/Modules/DatabaseInteractor|DatabaseInteractor]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/DatabaseInteractor|DatabaseInteractor]] extension)</small> |
| − | * [[Documentation/Nightly/Modules/DataStore| | + | * [[Documentation/Nightly/Extensions/DatabaseInteractor|DatabaseInteractorLib]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/DatabaseInteractor|DatabaseInteractor]] extension)</small> |
| − | * [[Documentation/Nightly/Modules/DiceComputation| | + | * [[Documentation/Nightly/Modules/DataProbe|DataProbe]] <small>(scripted, built-in)</small> |
| + | * [[Documentation/Nightly/Modules/DataStore|DataStore]] <small>(loadable, built-in)</small> | ||
| + | * [[Documentation/Nightly/Modules/DeepInfer|DeepInfer]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/DeepInfer|DeepInfer]] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/DiceComputation|DiceComputation]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/DiceComputation|DiceComputation]] extension)</small> | ||
* [[Documentation/Nightly/Modules/DICOM|DICOM]] <small>(scripted, built-in)</small> | * [[Documentation/Nightly/Modules/DICOM|DICOM]] <small>(scripted, built-in)</small> | ||
| − | * | + | * [[Documentation/Nightly/Extensions/SlicerDMRI|DICOM2FullBrainTractography]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small> |
| − | * [[Documentation/Nightly/Extensions/SlicerRT| | + | * DICOMPatcher <small>(scripted, built-in)</small> |
| − | * [[Documentation/Nightly/Modules/DicomSroExport| | + | * [[Documentation/Nightly/Extensions/SlicerRT|DicomRtImportExport]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small> |
| − | * [[Documentation/Nightly/Modules/DicomSroImport| | + | * [[Documentation/Nightly/Modules/DicomSroExport|DicomSroExport]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small> |
| − | * [[Documentation/Nightly/ | + | * [[Documentation/Nightly/Modules/DicomSroImport|DicomSroImport]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small> |
| − | * [[Documentation/Nightly/Modules/ | + | * [[Documentation/Nightly/Extensions/SlicerDMRI|DICOMTract_to_VTK]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small> |
| − | * [[Documentation/Nightly/Modules/ | + | * [[Documentation/Nightly/Modules/DiffusionTensorScalarMeasurements|DiffusionTensorScalarMeasurements]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small> |
| − | * [[Documentation/Nightly/Modules/ | + | * [[Documentation/Nightly/Modules/DiffusionWeightedVolumeMasking|DiffusionWeightedVolumeMasking]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small> |
| − | * [[Documentation/Nightly/Modules/ | + | * [[Documentation/Nightly/Modules/DistanceMapBasedRegistration|DistanceMapBasedRegistration]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerProstate|SlicerProstate]] extension)</small> |
| − | * [[Documentation/Nightly/ | + | * [[Documentation/Nightly/Modules/DMRIInstall|DMRIInstall]] <small>(scripted, built-in)</small> |
| − | * [[Documentation/Nightly/Extensions/MarginCalculator| | + | * [[Documentation/Nightly/Modules/DoseAccumulation|DoseAccumulation]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small> |
| − | * [[Documentation/Nightly/Modules/DoseVolumeHistogram| | + | * [[Documentation/Nightly/Modules/DoseComparison|DoseComparison]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small> |
| + | * [[Documentation/Nightly/Extensions/MarginCalculator|DoseMorphology]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/MarginCalculator|MarginCalculator]] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/DoseVolumeHistogram|DoseVolumeHistogram]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small> | ||
* [[Documentation/Nightly/Modules/Downsize|Downsize]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small> | * [[Documentation/Nightly/Modules/Downsize|Downsize]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small> | ||
| − | * [[Documentation/Nightly/Modules/dPetBrainQuantification| | + | * [[Documentation/Nightly/Modules/dPetBrainQuantification|dPetBrainQuantification]] <small>(scripted, bundled in [http://gti-fing.github.io/SlicerPetSpectAnalysis PetSpectAnalysis] extension)</small> |
* [http://slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/DSC_MRI_Analysis DSCMRIAnalysis] <small>(cli, bundled in [http://slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/DSC_MRI_Analysis DSCMRIAnalysis] extension)</small> | * [http://slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/DSC_MRI_Analysis DSCMRIAnalysis] <small>(cli, bundled in [http://slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/DSC_MRI_Analysis DSCMRIAnalysis] extension)</small> | ||
| − | * [[Documentation/Nightly/Extensions/SlicerRT| | + | * DumpSEGFrame <small>(cli)</small> |
| + | * [[Documentation/Nightly/Extensions/SlicerRT|DvhComparison]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small> | ||
* DWIConvert <small>(cli, built-in)</small> | * DWIConvert <small>(cli, built-in)</small> | ||
| − | * [[Documentation/Nightly/Modules/DWIToDTIEstimation| | + | * [[Documentation/Nightly/Modules/DWIToDTIEstimation|DWIToDTIEstimation]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small> |
| − | * [[Documentation/Nightly/Modules/DWModeling|DWModeling]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerProstate| | + | * [[Documentation/Nightly/Modules/DWModeling|DWModeling]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerProstate|SlicerProstate]] extension)</small> |
| − | * [[Documentation/Nightly/ | + | * [[Documentation/Nightly/Modules/EasyClip|EasyClip]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/EasyClip|EasyClip]] extension)</small> |
* [[Documentation/Nightly/Modules/Editor|Editor]] <small>(scripted, built-in)</small> | * [[Documentation/Nightly/Modules/Editor|Editor]] <small>(scripted, built-in)</small> | ||
* [[Documentation/Nightly/Modules/EMSegment|EMSegment]] <small>(loadable, built-in)</small> | * [[Documentation/Nightly/Modules/EMSegment|EMSegment]] <small>(loadable, built-in)</small> | ||
| − | * | + | * EMSegmentCommandLine <small>(cli, built-in)</small> |
| − | * | + | * EMSegmentQuick <small>(loadable, built-in)</small> |
| − | * | + | * EMSegmentTransformToNewFormat <small>(cli, built-in)</small> |
| − | * [[Documentation/Nightly/Modules/EncodeSEG| | + | * [[Documentation/Nightly/Modules/EncodeSEG|EncodeSEG]] <small>(cli)</small> |
* [[Documentation/Nightly/Modules/Endoscopy|Endoscopy]] <small>(scripted, built-in)</small> | * [[Documentation/Nightly/Modules/Endoscopy|Endoscopy]] <small>(scripted, built-in)</small> | ||
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org EnhanceFissuresInImage] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org EvaluateLungLobeSegmentationResults] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org ExecuteSystemCommand] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [ | + | * [[Documentation/Nightly/Extensions/SlicerRT|ExternalBeamPlanning]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org ExtractChestLabelMap] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org ExtractFissureBoundaryFromLobeMap] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [ | + | * [http://www.chestimagingplatform.org ExtractParticlesFromChestRegionChestType] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | + | * [[Documentation/Nightly/Modules/ExtractSkeleton|ExtractSkeleton]] <small>(cli, built-in)</small> | |
| − | * [ | + | * [[Documentation/Nightly/Modules/FastGrowCut|FastGrowCut]] <small>(loadable, bundled in [[Documentation/4.3/Modules/FastGrowCut|FastGrowCutEffect]] extension)</small> |
| − | * | + | * [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|FastGrowCutSegmenter]] <small>(loadable, bundled in [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|CarreraSlice]] extension)</small> |
| − | * [[Documentation/Nightly/Modules/FiberBundleToLabelMap| | + | * [[Documentation/Nightly/Modules/FiberBundleLabelSelect|FiberBundleLabelSelect]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small> |
| − | + | * [[Documentation/Nightly/Modules/FiberBundleToLabelMap|FiberBundleToLabelMap]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small> | |
| − | * [[Documentation/Nightly/Modules/FiberTractMeasurements| | + | * [[Documentation/Nightly/Modules/FiberTractMeasurements|FiberTractMeasurements]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small> |
| − | * [[Documentation/Nightly/Modules/FiducialRegistration| | + | * [[Documentation/Nightly/Modules/FiducialRegistration|FiducialRegistration]] <small>(cli, built-in)</small> |
| − | * [[Documentation/Nightly/Extensions/SlicerIGT| | + | * [[Documentation/Nightly/Extensions/SlicerIGT|FiducialRegistrationWizard]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small> |
| − | * [[Documentation/Nightly/Extensions/SlicerIGT| | + | * [[Documentation/Nightly/Extensions/SlicerIGT|FiducialsToModelRegistration]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small> |
| − | * [ | + | * [[Documentation/Nightly/Modules/FilmDosimetry|FilmDosimetryAnalysis]] <small>(scripted, bundled in [[Documentation/Nightly/Modules/FilmDosimetry|FilmDosimetryAnalysis]] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org FilterAirwayParticleData] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org FilterConnectedComponents] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org FilterFissureParticleData] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org FilterVesselParticleData] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [ | + | * [http://www.chestimagingplatform.org FindPatchMatch] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [ | + | * [http://www.chestimagingplatform.org FitLobeSurfaceModelsToParticleData] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [ | + | * [[Documentation/Nightly/Modules/GaussianBlurImageFilter|GaussianBlurImageFilter]] <small>(cli, built-in)</small> |
| − | * [[Documentation/Nightly/Modules/ | + | * [[Documentation/Nightly/Modules/GelDosimetry|GelDosimetryAnalysis]] <small>(scripted, bundled in [[Documentation/Nightly/Modules/GelDosimetry|GelDosimetryAnalysis]] extension)</small> |
| − | * [ | + | * [[Documentation/Nightly/Modules/GelDosimetry|GelDosimetryAnalysisAlgo]] <small>(loadable, bundled in [[Documentation/Nightly/Modules/GelDosimetry|GelDosimetryAnalysis]] extension)</small> |
| − | * [http://www. | + | * [http://www.chestimagingplatform.org GenerateAtlasConvexHull] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org GenerateBinaryThinning3D] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org GenerateDistanceMapFromLabelMap] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org GenerateImageSubVolumes] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org GenerateLesionSegmentation] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org GenerateLobeSurfaceModels] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org GenerateMedianFilteredImage] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org GenerateModel] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org GenerateNLMFilteredImage] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org GenerateOtsuLungCast] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org GenerateOverlayImages] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org GenerateParenchymaPhenotypes] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org GeneratePartialLungLabelMap] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org GenerateSimpleLungMask] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org GenerateStenciledLabelMapFromParticles] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org GetStructuresInLabelMap] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org GetTransformationKappa] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org GetTransformationKappa2D] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [ | + | * [http://www.chestimagingplatform.org GetTransformationSimilarityMetric] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [ | + | * [[Documentation/Nightly/Modules/GradientAnisotropicDiffusion|GradientAnisotropicDiffusion]] <small>(cli, built-in)</small> |
| − | * [[Documentation/Nightly/Modules/GrayscaleFillHoleImageFilter| | + | * [http://publish.uwo.ca/~dchen285/GraphCutSegment/GraphCutSegment.html GraphCutInteractiveSegmenter] <small>(loadable, bundled in [http://publish.uwo.ca/~dchen285/GraphCutSegment/GraphCutSegment.html GraphCutSegment] extension)</small> |
| − | * [[Documentation/Nightly/Modules/GrayscaleGrindPeakImageFilter| | + | * [http://www.chestimagingplatform.org GraphCutsOptimization] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [[Documentation/Nightly/Modules/GrayscaleModelMaker| | + | * [[Documentation/Nightly/Modules/GrayscaleFillHoleImageFilter|GrayscaleFillHoleImageFilter]] <small>(cli, built-in)</small> |
| + | * [[Documentation/Nightly/Modules/GrayscaleGrindPeakImageFilter|GrayscaleGrindPeakImageFilter]] <small>(cli, built-in)</small> | ||
| + | * [[Documentation/Nightly/Modules/GrayscaleModelMaker|GrayscaleModelMaker]] <small>(cli, built-in)</small> | ||
* [[Documentation/Nightly/Modules/Growing|Growing]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small> | * [[Documentation/Nightly/Modules/Growing|Growing]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small> | ||
| − | * [[Documentation/Nightly/Modules/GyroGuide| | + | * [[Documentation/Nightly/Modules/GyroGuide|GyroGuide]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/GyroGuide|GyroGuide]] extension)</small> |
| − | * [[Documentation/Nightly/Modules/HeterogeneityCAD| | + | * [[Documentation/Nightly/Modules/HeterogeneityCAD|HeterogeneityCAD]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/OpenCAD|OpenCAD]] extension)</small> |
| − | * [[Documentation/Nightly/Modules/HistogramMatching| | + | * [[Documentation/Nightly/Modules/HistogramMatching|HistogramMatching]] <small>(cli, built-in)</small> |
* [[Documentation/Nightly/Extensions/IASEM|IASEMImport]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small> | * [[Documentation/Nightly/Extensions/IASEM|IASEMImport]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small> | ||
| − | * [[Documentation/Nightly/Extensions/IASEM| | + | * [[Documentation/Nightly/Extensions/IASEM|IASEMImportSeries]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small> |
| − | * [[Documentation/Nightly/Extensions/iGyne| | + | * [[Documentation/Nightly/Extensions/iGyne|iGyne]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/iGyne|iGyne]] extension)</small> |
| − | * [[Documentation/Nightly/Modules/ImageLabelCombine| | + | * [[Documentation/Nightly/Modules/ImageLabelCombine|ImageLabelCombine]] <small>(cli, built-in)</small> |
| − | * [[Documentation/Nightly/Modules/IntensityDifferenceMetric| | + | * [[Documentation/Nightly/Modules/IntensityDifferenceMetric|IntensityDifferenceMetric]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/ChangeTracker|ChangeTracker]] extension)</small> |
| − | * [[Documentation/Nightly/Extensions/IntensitySegmenter| | + | * [[Documentation/Nightly/Extensions/IntensitySegmenter|IntensitySegmenter]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/IntensitySegmenter|IntensitySegmenter]] extension)</small> |
| − | * [ | + | * IslandRemoval <small>(cli, built-in)</small> |
| − | * | + | * [[Documentation/Nightly/Modules/Isodose|Isodose]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small> |
| − | * [[Documentation/Nightly/ | + | * [[Documentation/Nightly/Extensions/DCMQI|itkimage2paramap]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/DCMQI|DCMQI]] extension)</small> |
| − | * [ | + | * [[Documentation/Nightly/Extensions/DCMQI|itkimage2segimage]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/DCMQI|DCMQI]] extension)</small> |
| − | * [[Documentation/Nightly/Modules/LabelAddition| | + | * [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|KUtil]] <small>(scripted, bundled in [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|CarreraSlice]] extension)</small> |
| − | * [[Documentation/Nightly/Modules/LabelExtraction| | + | * [[Documentation/Nightly/Modules/LabelAddition|LabelAddition]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [[Documentation/Nightly/Modules/LabelExtraction|LabelExtraction]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small> |
| − | * [[Documentation/Nightly/Modules/LabelMapSmoothing| | + | * [http://www.chestimagingplatform.org LabelMapFromRegionAndTypePoints] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [[Documentation/Nightly/Extensions/IASEM| | + | * [[Documentation/Nightly/Modules/LabelMapSmoothing|LabelMapSmoothing]] <small>(cli, built-in)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [[Documentation/Nightly/Extensions/IASEM|LabelObjectStatistics]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small> |
| − | * [[Documentation/Nightly/Modules/LabelStatistics| | + | * [http://www.chestimagingplatform.org LabelParticlesByChestRegionChestType] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [[Documentation/Nightly/Modules/LandmarkRegistration| | + | * [[Documentation/Nightly/Modules/LabelStatistics|LabelStatistics]] <small>(scripted, built-in)</small> |
| − | * [[Documentation/Nightly/Modules/LAScarSegmenter| | + | * [[Documentation/Nightly/Modules/LandmarkRegistration|LandmarkRegistration]] <small>(scripted, built-in)</small> |
| − | * [[Documentation/Nightly/Modules/LASegmentationWorkflow| | + | * [[Documentation/Nightly/Modules/LAScarSegmenter|LAScarSegmenter]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/LAScarSegmenter|LAScarSegmenter]] extension)</small> |
| − | * [http://slicer.vmtk.org/ | + | * [[Documentation/Nightly/Modules/LASegmentationWorkflow|LASegmentationWorkflow]] <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac_MRI_Toolkit] extension)</small> |
| − | + | * [http://slicer.vmtk.org/ LevelSetSegmentation] <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small> | |
| − | * [[Documentation/Nightly/Extensions/MarginCalculator| | + | * [[Documentation/Nightly/Extensions/MarginCalculator|MarginCalculator]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/MarginCalculator|MarginCalculator]] extension)</small> |
* [[Documentation/Nightly/Modules/Markups|Markups]] <small>(loadable, built-in)</small> | * [[Documentation/Nightly/Modules/Markups|Markups]] <small>(loadable, built-in)</small> | ||
| − | * [[Documentation/Nightly/Extensions/SlicerIGT| | + | * [[Documentation/Nightly/Extensions/SlicerIGT|MarkupsToModel]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small> |
| − | * [[Documentation/Nightly/Modules/MaskCreation| | + | * [[Documentation/Nightly/Modules/MaskCreation|MaskCreation]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org MaskOutLabelMapStructures] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [[Documentation/Nightly/Modules/MaskScalarVolume| | + | * [[Documentation/Nightly/Modules/MaskScalarVolume|MaskScalarVolume]] <small>(cli, built-in)</small> |
| − | * [[Documentation/Nightly/Modules/MedianImageFilter| | + | * [[Documentation/Nightly/Modules/MedianImageFilter|MedianImageFilter]] <small>(cli, built-in)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org MergeChestLabelMaps] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [[Documentation/Nightly/Modules/MergeModels| | + | * [[Documentation/Nightly/Modules/MergeModels|MergeModels]] <small>(cli, built-in)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org MergeParticleDataSets] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [[Documentation/Nightly/Modules/ | + | * [[Documentation/Nightly/Modules/MeshStatistics|MeshStatistics]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/MeshStatistics|MeshStatisticsExtension]] extension)</small> |
| − | * [[Documentation/Nightly/Extensions/MeshToLabelMap| | + | * [[Documentation/Nightly/Extensions/MeshToLabelMap|MeshToLabelMap]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/MeshToLabelMap|MeshToLabelMap]] extension)</small> |
| − | * [[Documentation/Nightly/Extensions/Sequences| | + | * [[Documentation/Nightly/Extensions/Sequences|MetafileImporter]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/Sequences|Sequences]] extension)</small> |
| − | * [[Documentation/Nightly/Modules/ModelMaker| | + | * [[Documentation/Nightly/Modules/ModelMaker|ModelMaker]] <small>(cli, built-in)</small> |
| − | * [[Documentation/Nightly/Extensions/SlicerIGT| | + | * [[Documentation/Nightly/Extensions/SlicerIGT|ModelRegistration]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small> |
* [[Documentation/Nightly/Modules/Models|Models]] <small>(loadable, built-in)</small> | * [[Documentation/Nightly/Modules/Models|Models]] <small>(loadable, built-in)</small> | ||
| − | * [[Documentation/Nightly/Modules/ModelToLabelMap| | + | * [[Documentation/Nightly/Modules/ModelToLabelMap|ModelToLabelMap]] <small>(cli, built-in)</small> |
| − | * [[Documentation/Nightly/Extensions/ModelToModelDistance| | + | * [[Documentation/Nightly/Extensions/ModelToModelDistance|ModelToModelDistance]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/ModelToModelDistance|ModelToModelDistance]] extension)</small> |
| − | * [[Documentation/Nightly/Extensions/ | + | * [[Documentation/Nightly/Extensions/mpReview|mpReview]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/mpReview|mpReview]] extension)</small> |
| − | * [[Documentation/Nightly/Extensions/ | + | * [[Documentation/Nightly/Extensions/mpReview|mpReviewPreprocessor]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/mpReview|mpReview]] extension)</small> |
| − | * [[Documentation/Nightly/ | + | * [[Documentation/Nightly/Modules/MultiplyScalarVolumes|MultiplyScalarVolumes]] <small>(cli, built-in)</small> |
| − | * [[Documentation/Nightly/ | + | * [[Documentation/Nightly/Modules/MultiVolumeExplorer|MultiVolumeExplorer]] <small>(loadable, built-in)</small> |
| − | * [[Documentation/Nightly/Modules/ | + | * [[Documentation/Nightly/Modules/MultiVolumeImporter|MultiVolumeImporter]] <small>(scripted, built-in)</small> |
| − | * [[Documentation/Nightly/Modules/ | + | * [[Documentation/Nightly/Modules/N4ITKBiasFieldCorrection|N4ITKBiasFieldCorrection]] <small>(cli, built-in)</small> |
| − | * [[Documentation/Nightly/ | + | * [[Documentation/Nightly/Extensions/NeedleFinder|NeedleFinder]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/NeedleFinder|NeedleFinder]] extension)</small> |
| − | + | * [[Documentation/Nightly/Modules/NonGrowing|NonGrowing]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small> | |
| − | * [[Documentation/Nightly/ | + | * [[Documentation/Nightly/Extensions/SlicerOpenCV|OpenCV]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerOpenCV|SlicerOpenCV]] extension)</small> |
| − | * [[Documentation/Nightly/ | + | * [[Documentation/Nightly/Modules/OpenIGTLinkIF|OpenIGTLinkIF]] <small>(loadable, built-in)</small> |
| − | * [[Documentation/Nightly/Modules/OpenIGTLinkIF| | + | * [[Documentation/Nightly/Modules/OpenIGTLinkRemote|OpenIGTLinkRemote]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small> |
| − | * [[Documentation/Nightly/Modules/OpenIGTLinkRemote| | + | * [[Documentation/Nightly/Modules/OrientScalarVolume|OrientScalarVolume]] <small>(cli, built-in)</small> |
| − | * [[Documentation/Nightly/Modules/OrientScalarVolume| | + | * [[Documentation/Nightly/Extensions/DCMQI|paramap2itkimage]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/DCMQI|DCMQI]] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org ParticlesDisplay] <small>(loadable, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [[Documentation/Nightly/Modules/PathExplorer| | + | * [[Documentation/Nightly/Modules/PathExplorer|PathExplorer]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small> |
* [[Documentation/Nightly/Extensions/PBNRR|PBNRR]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/PBNRR|PBNRR]] extension)</small> | * [[Documentation/Nightly/Extensions/PBNRR|PBNRR]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/PBNRR|PBNRR]] extension)</small> | ||
| − | * | + | * PerformMetricTest <small>(cli, built-in)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org PerformMorphological] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [[Documentation/Nightly/Modules/PerkEvaluator|PerkEvaluator]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/PerkTutor|PerkTutor]] extension)</small> |
| − | * [[Documentation/Nightly/Extensions/PET-IndiC| | + | * [http://www.chestimagingplatform.org PerturbParticles] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [[Documentation/Nightly/Modules/PETStandardUptakeValueComputation| | + | * [[Documentation/Nightly/Extensions/PET-IndiC|PETIndiC]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PET-IndiC|PET-IndiC]] extension)</small> |
| − | * [[Documentation/Nightly/Extensions/LongitudinalPETCT| | + | * [[Documentation/Nightly/Modules/PETLiverUptakeMeasurement|PETLiverUptakeMeasurement]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/PETLiverUptakeMeasurement|PETLiverUptakeMeasurement]] extension)</small> |
| − | * [[Documentation/Nightly/Extensions/PETTumorSegmentation| | + | * [[Documentation/Nightly/Modules/PETStandardUptakeValueComputation|PETStandardUptakeValueComputation]] <small>(cli, built-in)</small> |
| − | * [[Documentation/Nightly/Extensions/SlicerHeart| | + | * [[Documentation/Nightly/Extensions/LongitudinalPETCT|PETSUVImageMaker]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/LongitudinalPETCT|LongitudinalPETCT]] extension)</small> |
| − | * [ | + | * [[Documentation/Nightly/Extensions/PETTumorSegmentation|PETTumorSegmentation]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/PETTumorSegmentation|PETTumorSegmentation]] extension)</small> |
| − | * [[Documentation/Nightly/Extensions/SlicerIGT| | + | * [[Documentation/Nightly/Extensions/SlicerHeart|Philips4dUsDicomPatcher]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerHeart|SlicerHeart]] extension)</small> |
| − | * [[Documentation/Nightly/Modules/PkModeling| | + | * [[Documentation/Nightly/Modules/PickAndPaint|PickAndPaint]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PickAndPaint|PickAndPaintExtension]] extension)</small> |
| − | * [[Documentation/Nightly/Extensions/SlicerRT| | + | * [[Documentation/Nightly/Extensions/SlicerIGT|PivotCalibration]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small> |
| − | * [[Documentation/Nightly/Extensions/SlicerRT| | + | * [[Documentation/Nightly/Modules/PkModeling|PkModeling]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/PkModeling|PkModeling]] extension)</small> |
| − | * [[Documentation/Nightly/Extensions/SlicerRT| | + | * [[Documentation/Nightly/Extensions/SlicerRT|PlanarImage]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small> |
| − | * [[Documentation/Nightly/Extensions/SlicerRT| | + | * [[Documentation/Nightly/Extensions/SlicerRT|plastimatch_slicer_bspline]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small> |
| − | * [[Documentation/Nightly/Extensions/SlicerRT| | + | * [[Documentation/Nightly/Extensions/SlicerRT|plastimatch_slicer_landwarp]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small> |
| − | * [[Documentation/Nightly/Modules/PlusRemote| | + | * [[Documentation/Nightly/Extensions/SlicerRT|PlastimatchPy]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small> |
| − | * [[Documentation/Nightly/Modules/ProbeVolumeWithModel| | + | * [[Documentation/Nightly/Extensions/SlicerRT|PlmRegister]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small> |
| − | * [[Documentation/Nightly/Extensions/Q3DC|Q3DC]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/Q3DC|Q3DC]] extension)</small> | + | * [[Documentation/Nightly/Extensions/SlicerIGT|PlusModelCatalogBrowser]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small> |
| − | * [[Documentation/Nightly/Modules/QuadEdgeSurfaceMesher| | + | * [[Documentation/Nightly/Modules/PlusRemote|PlusRemote]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [[Documentation/Nightly/Modules/ProbeVolumeWithModel|ProbeVolumeWithModel]] <small>(cli, built-in)</small> |
| − | * [[Documentation/Nightly/Modules/QuantitativeIndicesCLI| | + | * [[Documentation/Nightly/Extensions/PerkTutor|PythonMetricsCalculator]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PerkTutor|PerkTutor]] extension)</small> |
| − | * [[Documentation/Nightly/Modules/QuantitativeIndicesTool| | + | * [[Documentation/Nightly/Modules/Q3DC|Q3DC]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/Q3DC|Q3DC]] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [[Documentation/Nightly/Modules/QuadEdgeSurfaceMesher|QuadEdgeSurfaceMesher]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerProstate|SlicerProstate]] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org QualityControl] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [[Documentation/Nightly/Modules/QuantitativeIndicesCLI|QuantitativeIndicesCLI]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/PET-IndiC|PET-IndiC]] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [[Documentation/Nightly/Modules/QuantitativeIndicesTool|QuantitativeIndicesTool]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PET-IndiC|PET-IndiC]] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [[Documentation/Nightly/Extensions/QuantitativeReporting|QuantitativeReporting]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/QuantitativeReporting|QuantitativeReporting]] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [[Documentation/Nightly/Extensions/SlicerPathology|QuickTCGA]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerPathology|SlicerPathology]] extension)</small> |
| + | * [http://www.chestimagingplatform.org ReadDicomWriteTags] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> | ||
| + | * [http://www.chestimagingplatform.org ReadNRRDsWriteVTK] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> | ||
| + | * [http://www.chestimagingplatform.org ReadVidaWriteCIP] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> | ||
| + | * [http://www.chestimagingplatform.org ReadVTKWriteNRRDs] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> | ||
| + | * [http://www.chestimagingplatform.org ReadWriteImageData] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> | ||
| + | * [http://www.chestimagingplatform.org ReadWriteRegionAndTypePoints] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> | ||
* [[Documentation/Nightly/Modules/Reformat|Reformat]] <small>(loadable, built-in)</small> | * [[Documentation/Nightly/Modules/Reformat|Reformat]] <small>(loadable, built-in)</small> | ||
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org RegionType] <small>(loadable, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org RegionTypeLocationsToROIVolume] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org RegisterCT] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org RegisterLabelMaps] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org RegisterLungAtlas] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org RemapLabelMap] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org RemoveChestTypeFromLabelMapUsingParticles] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org RemoveParticlesFromParticlesDataSet] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org ResampleCT] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [[Documentation/Nightly/Extensions/ResampleDTIlogEuclidean| | + | * [[Documentation/Nightly/Extensions/ResampleDTIlogEuclidean|ResampleDTIlogEuclidean]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/ResampleDTIlogEuclidean|ResampleDTIlogEuclidean]] extension)</small> |
| − | * [[Documentation/Nightly/Modules/ResampleDTIVolume| | + | * [[Documentation/Nightly/Modules/ResampleDTIVolume|ResampleDTIVolume]] <small>(cli, built-in)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org ResampleLabelMap] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [[Documentation/Nightly/Modules/ResampleScalarVectorDWIVolume| | + | * [[Documentation/Nightly/Modules/ResampleScalarVectorDWIVolume|ResampleScalarVectorDWIVolume]] <small>(cli, built-in)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [http://www.chestimagingplatform.org RescaleLabelMap] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> |
| − | * [[Documentation/Nightly/Modules/RobustStatisticsSegmenter| | + | * [[Documentation/Nightly/Modules/ResectionVolume|ResectionVolume]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/ResectionPlanner|ResectionPlanner]] extension)</small> |
| − | * [[Documentation/Nightly/Modules/SampleData| | + | * [[Documentation/Nightly/Modules/ROBEXBrainExtraction|ROBEXBrainExtraction]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/ROBEXBrainExtraction|ROBEXBrainExtraction]] extension)</small> |
| − | * [[Documentation/Nightly/Modules/ScarVisualization| | + | * [[Documentation/Nightly/Modules/RobustStatisticsSegmenter|RobustStatisticsSegmenter]] <small>(cli, built-in)</small> |
| − | * [[Documentation/Nightly/Modules/SceneViews| | + | * [[Documentation/Nightly/Modules/SampleData|SampleData]] <small>(scripted, built-in)</small> |
| − | * [[Documentation/Nightly/Modules/ | + | * [https://kitwaremedical.github.io/SlicerITKUltrasoundDoc/ ScanConvertCurvilinearArray] <small>(cli, bundled in [https://kitwaremedical.github.io/SlicerITKUltrasoundDoc/ SlicerITKUltrasound] extension)</small> |
| − | * [[Documentation/Nightly/ | + | * [https://kitwaremedical.github.io/SlicerITKUltrasoundDoc/ ScanConvertPhasedArray3D] <small>(cli, bundled in [https://kitwaremedical.github.io/SlicerITKUltrasoundDoc/ SlicerITKUltrasound] extension)</small> |
| − | * [[Documentation/Nightly/Modules/SegmentationSmoothing| | + | * [https://kitwaremedical.github.io/SlicerITKUltrasoundDoc/ ScanConvertSliceSeries] <small>(cli, bundled in [https://kitwaremedical.github.io/SlicerITKUltrasoundDoc/ SlicerITKUltrasound] extension)</small> |
| − | * [[Documentation/Nightly/Modules/SegmentCAD| | + | * [[Documentation/Nightly/Modules/ScarVisualization|ScarVisualization]] <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac_MRI_Toolkit] extension)</small> |
| − | * [[Documentation/Nightly/Modules/SegmentComparison| | + | * [[Documentation/Nightly/Extensions/ScatteredTransform|ScatteredTransform]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/ScatteredTransform|ScatteredTransform]] extension)</small> |
| − | * [[Documentation/Nightly/ | + | * [[Documentation/Nightly/Modules/SceneViews|SceneViews]] <small>(loadable, built-in)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [[Documentation/Nightly/Modules/ScreenCapture|ScreenCapture]] <small>(scripted, built-in)</small> |
| − | * [[Documentation/Nightly/Modules/SegmentMorphology| | + | * [[Documentation/Nightly/Modules/SEG2NRRD|SEG2NRRD]] <small>(cli)</small> |
| − | * [[Documentation/Nightly/Extensions/Sequences| | + | * [[Documentation/Nightly/Extensions/DCMQI|segimage2itkimage]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/DCMQI|DCMQI]] extension)</small> |
| + | * [[Documentation/Nightly/Modules/Segmentations|Segmentations]] <small>(loadable, built-in)</small> | ||
| + | * [[Documentation/Nightly/Modules/SegmentationSmoothing|SegmentationSmoothing]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerProstate|SlicerProstate]] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/SegmentCAD|SegmentCAD]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/OpenCAD|OpenCAD]] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/SegmentComparison|SegmentComparison]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/SegmentEditor|SegmentEditor]] <small>(scripted, built-in)</small> | ||
| + | * [https://github.com/lassoan/SlicerSegmentEditorExtraEffects SegmentEditorFastMarching] <small>(scripted, bundled in [https://github.com/lassoan/SlicerSegmentEditorExtraEffects SegmentEditorExtraEffects] extension)</small> | ||
| + | * [https://github.com/lassoan/SlicerSegmentEditorExtraEffects SegmentEditorFloodFilling] <small>(scripted, bundled in [https://github.com/lassoan/SlicerSegmentEditorExtraEffects SegmentEditorExtraEffects] extension)</small> | ||
| + | * [https://github.com/lassoan/SlicerSegmentEditorExtraEffects SegmentEditorWatershed] <small>(scripted, bundled in [https://github.com/lassoan/SlicerSegmentEditorExtraEffects SegmentEditorExtraEffects] extension)</small> | ||
| + | * [http://www.chestimagingplatform.org SegmentLungAirways] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> | ||
| + | * [http://www.chestimagingplatform.org SegmentLungLobes] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/SegmentMorphology|SegmentMorphology]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small> | ||
| + | * SegmentStatistics <small>(scripted, built-in)</small> | ||
| + | * [[Documentation/Nightly/Extensions/Sequences|SequenceBrowser]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/Sequences|Sequences]] extension)</small> | ||
* [[Documentation/Nightly/Extensions/Sequences|Sequences]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/Sequences|Sequences]] extension)</small> | * [[Documentation/Nightly/Extensions/Sequences|Sequences]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/Sequences|Sequences]] extension)</small> | ||
| − | * [[Documentation/Nightly/Modules/SimpleFilters| | + | * [[Documentation/Nightly/Modules/ShapeQuantifier|ShapeQuantifier]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/ShapeQuantifier|ShapeQuantifier]] extension)</small> |
| − | * [[Documentation/Nightly/Modules/SimpleRegionGrowingSegmentation| | + | * [[Documentation/Nightly/Extensions/ShapeQuantifier|ShapeQuantifierCore]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/ShapeQuantifier|ShapeQuantifier]] extension)</small> |
| − | * [[Documentation/Nightly/Modules/SkullStripper| | + | * [[Documentation/Nightly/Extensions/SlicerPathology|ShortCutCore]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerPathology|SlicerPathology]] extension)</small> |
| − | * [[Documentation/Nightly/Modules/SlicerToKiwiExporter| | + | * [[Documentation/Nightly/Modules/SimpleFilters|SimpleFilters]] <small>(scripted, built-in)</small> |
| − | * [[Documentation/Nightly/Extensions/IASEM| | + | * [[Documentation/Nightly/Modules/SimpleRegionGrowingSegmentation|SimpleRegionGrowingSegmentation]] <small>(cli, built-in)</small> |
| − | * [[Documentation/Nightly/Modules/SpinalCurvatureMeasurement| | + | * [[Documentation/Nightly/Modules/SkullStripper|SkullStripper]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/SkullStripper|SkullStripper]] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [[Documentation/Nightly/Modules/SlicerAstroDataProbe|SlicerAstroDataProbe]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small> |
| − | * [[Documentation/Nightly/Modules/SubjectHierarchy| | + | * [[Documentation/Nightly/Extensions/SlicerPathology|SlicerPathology]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerPathology|SlicerPathology]] extension)</small> |
| − | * [[Documentation/Nightly/Modules/SubtractScalarVolumes| | + | * [[Documentation/Nightly/Modules/SlicerToKiwiExporter|SlicerToKiwiExporter]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerToKiwiExporter|SlicerToKiwiExporter]] extension)</small> |
| − | * [[Documentation/Nightly/Modules/SurfaceRegistration| | + | * [[Documentation/Nightly/Extensions/SliceTracker|SliceTracker]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SliceTracker|SliceTracker]] extension)</small> |
| − | * [[Documentation/Nightly/Modules/SurfaceToolbox| | + | * [[Documentation/Nightly/Extensions/SliceTracker|SliceTrackerRegistration]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SliceTracker|SliceTracker]] extension)</small> |
| − | * [[Documentation/Nightly/Modules/SUVFactorCalculator| | + | * [[Documentation/Nightly/Extensions/SliceTracker|SliceTrackerZFrameRegistration]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SliceTracker|SliceTracker]] extension)</small> |
| − | * [[Documentation/Nightly/Modules/SwissSkullStripper| | + | * [[Documentation/Nightly/Modules/SobolevSegmenter|SobolevSegmenter]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/SobolevSegmenter|SobolevSegmenter]] extension)</small> |
| − | * [[Documentation/Nightly/Extensions/MarginCalculator| | + | * [[Documentation/Nightly/Extensions/IASEM|SpacingAwareCurvatureDiffusion]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small> |
| + | * [[Documentation/Nightly/Modules/SpinalCurvatureMeasurement|SpinalCurvatureMeasurement]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/Scoliosis|Scoliosis]] extension)</small> | ||
| + | * [http://www.chestimagingplatform.org SplitLeftLungRightLung] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/SubjectHierarchy|SubjectHierarchy]] <small>(loadable, built-in)</small> | ||
| + | * [[Documentation/Nightly/Modules/SubtractScalarVolumes|SubtractScalarVolumes]] <small>(cli, built-in)</small> | ||
| + | * [[Documentation/Nightly/Modules/SurfaceRegistration|SurfaceRegistration]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/SurfaceToolbox|SurfaceToolbox]] <small>(scripted, built-in)</small> | ||
| + | * [[Documentation/Nightly/Modules/SUVFactorCalculator|SUVFactorCalculator]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/PETDICOM|PETDICOMExtension]] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/SwissSkullStripper|SwissSkullStripper]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/SwissSkullStripper|SwissSkullStripper]] extension)</small> | ||
| + | * [[Documentation/Nightly/Extensions/MarginCalculator|SyntheticRTDose]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/MarginCalculator|MarginCalculator]] extension)</small> | ||
* [[Documentation/Nightly/Modules/T1Mapping|T1Mapping]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/T1Mapping|T1Mapping]] extension)</small> | * [[Documentation/Nightly/Modules/T1Mapping|T1Mapping]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/T1Mapping|T1Mapping]] extension)</small> | ||
* [[Documentation/Nightly/Modules/Tables|Tables]] <small>(loadable, built-in)</small> | * [[Documentation/Nightly/Modules/Tables|Tables]] <small>(loadable, built-in)</small> | ||
* [[Documentation/Nightly/Extensions/TCIABrowser|TCIABrowser]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/TCIABrowser|TCIABrowser]] extension)</small> | * [[Documentation/Nightly/Extensions/TCIABrowser|TCIABrowser]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/TCIABrowser|TCIABrowser]] extension)</small> | ||
| − | * [[Documentation/Nightly/Modules/ThresholdScalarVolume| | + | * Terminologies <small>(loadable, built-in)</small> |
| − | * [[Documentation/Nightly/ | + | * [[Documentation/Nightly/Extensions/SlicerIGT|TextureModel]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small> |
| − | * [[Documentation/Nightly/Modules/TractographyDisplay| | + | * [[Documentation/Nightly/Modules/ThresholdScalarVolume|ThresholdScalarVolume]] <small>(cli, built-in)</small> |
| − | * | + | * [[Documentation/Nightly/Extensions/DCMQI|tid1500reader]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/DCMQI|DCMQI]] extension)</small> |
| − | * [[Documentation/Nightly/Modules/TractographyLabelMapSeeding| | + | * [[Documentation/Nightly/Extensions/DCMQI|tid1500writer]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/DCMQI|DCMQI]] extension)</small> |
| − | * [http://www.chestimagingplatform.org | + | * [[Documentation/Nightly/Modules/TrackerStabilizer|TrackerStabilizer]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/TrackerStabilizer|TrackerStabilizer]] extension)</small> |
| − | * [[Documentation/Nightly/Extensions/SlicerIGT| | + | * [[Documentation/Nightly/Modules/TractographyDisplay|TractographyDisplay]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small> |
| + | * [[Documentation/Nightly/Modules/TractographyInteractiveSeeding|TractographyInteractiveSeeding]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/TractographyLabelMapSeeding|TractographyLabelMapSeeding]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small> | ||
| + | * [http://www.chestimagingplatform.org TransferRegionAndTypeIndicesToFromPoints] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small> | ||
| + | * [[Documentation/Nightly/Extensions/SlicerIGT|TransformFusion]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/TransformRecorder|TransformRecorder]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/PerkTutor|PerkTutor]] extension)</small> | ||
* [[Documentation/Nightly/Modules/Transforms|Transforms]] <small>(loadable, built-in)</small> | * [[Documentation/Nightly/Modules/Transforms|Transforms]] <small>(loadable, built-in)</small> | ||
* [[Documentation/Nightly/Modules/UKFTractography|UKFTractography]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/UKFTractography|UKFTractography]] extension)</small> | * [[Documentation/Nightly/Modules/UKFTractography|UKFTractography]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/UKFTractography|UKFTractography]] extension)</small> | ||
| − | * [[Documentation/Nightly/Extensions/SlicerIGT| | + | * [[Documentation/Nightly/Extensions/SlicerIGT|UltrasoundSnapshots]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small> |
* [[Documentation/Nightly/Modules/Units|Units]] <small>(loadable, built-in)</small> | * [[Documentation/Nightly/Modules/Units|Units]] <small>(loadable, built-in)</small> | ||
| − | * [[Documentation/Nightly/Extensions/SlicerHeart| | + | * [[Documentation/Nightly/Extensions/SlicerHeart|ValveView]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerHeart|SlicerHeart]] extension)</small> |
| − | * | + | * VBRAINSDemonWarp <small>(cli, built-in)</small> |
| − | * [[Documentation/Nightly/Modules/VectorToScalarVolume| | + | * [[Documentation/Nightly/Modules/VectorToScalarVolume|VectorToScalarVolume]] <small>(scripted, built-in)</small> |
| − | * [http://slicer.vmtk.org/ | + | * [http://slicer.vmtk.org/ VesselnessFiltering] <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small> |
| − | * [[Documentation/Nightly/Extensions/SlicerRT| | + | * [[Documentation/Nightly/Extensions/SlicerRT|VffFileReader]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small> |
| − | * [[Documentation/Nightly/Modules/ViewControllers| | + | * [[Documentation/Nightly/Modules/ViewControllers|ViewControllers]] <small>(loadable, built-in)</small> |
| − | * [ | + | * [[Documentation/Nightly/Extensions/SlicerIGT|Viewpoint]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small> |
| − | * [[Documentation/Nightly/Extensions/VolumeClip| | + | * [[Documentation/Nightly/Modules/VirtualReality|VirtualReality]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerVirtualReality|SlicerVirtualReality]] extension)</small> |
| − | * [[Documentation/Nightly/Extensions/VolumeClip| | + | * [[Documentation/Nightly/Extensions/SliceTracker|VolumeClipToLabel]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SliceTracker|SliceTracker]] extension)</small> |
| − | * [[Documentation/Nightly/Modules/VolumeRendering| | + | * [[Documentation/Nightly/Extensions/VolumeClip|VolumeClipWithModel]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/VolumeClip|VolumeClip]] extension)</small> |
| − | * [[Documentation/Nightly/Modules/VolumeResliceDriver| | + | * [[Documentation/Nightly/Extensions/VolumeClip|VolumeClipWithRoi]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/VolumeClip|VolumeClip]] extension)</small> |
| + | * [[Documentation/Nightly/Modules/VolumeRendering|VolumeRendering]] <small>(loadable, built-in)</small> | ||
| + | * [[Documentation/Nightly/Modules/VolumeResliceDriver|VolumeResliceDriver]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small> | ||
* [[Documentation/Nightly/Modules/Volumes|Volumes]] <small>(loadable, built-in)</small> | * [[Documentation/Nightly/Modules/Volumes|Volumes]] <small>(loadable, built-in)</small> | ||
| − | * [[Documentation/Nightly/Modules/VotingBinaryHoleFillingImageFilter| | + | * [[Documentation/Nightly/Modules/VotingBinaryHoleFillingImageFilter|VotingBinaryHoleFillingImageFilter]] <small>(cli, built-in)</small> |
| + | * [[Documentation/Nightly/Extensions/SlicerDMRI|VTK_to_DICOMTract]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small> | ||
* [https://github.com/Tomnl/Slicer-Wasp Wasp] <small>(scripted, bundled in [https://github.com/Tomnl/Slicer-Wasp Wasp] extension)</small> | * [https://github.com/Tomnl/Slicer-Wasp Wasp] <small>(scripted, bundled in [https://github.com/Tomnl/Slicer-Wasp Wasp] extension)</small> | ||
| − | * [[Documentation/Nightly/Modules/Watchdog|Watchdog]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT| | + | * [[Documentation/Nightly/Modules/Watchdog|Watchdog]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small> |
* [[Documentation/Nightly/Modules/Welcome|Welcome]] <small>(loadable, built-in)</small> | * [[Documentation/Nightly/Modules/Welcome|Welcome]] <small>(loadable, built-in)</small> | ||
| − | * [[Documentation/Nightly/Extensions/WindowLevelEffect| | + | * [[Documentation/Nightly/Extensions/WindowLevelEffect|WindowLevelEffect]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/WindowLevelEffect|WindowLevelEffect]] extension)</small> |
| + | * [[Documentation/Nightly/Modules/WorkflowSegmentation|WorkflowSegmentation]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/PerkTutor|PerkTutor]] extension)</small> | ||
| + | * [[Documentation/Nightly/Extensions/XNATSlicer|XnatSlicer]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/XNATSlicer|XNATSlicer]] extension)</small> | ||
| + | * [[Documentation/Nightly/Extensions/SliceTracker|ZFrameCalibration]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/SliceTracker|SliceTracker]] extension)</small> | ||
Latest revision as of 18:02, 13 November 2022
Home < Documentation < Nightly < ModuleExtensionListing
- Modules by category
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- Extensions by name
- Extensions by contributing organization
- Extensions by contributing individual
Modules by category
46 categories:
- Astronomy
- Cardiac
- Cardiac MRI Toolkit
- Chest Imaging Platform
- CIP
- Converters
- Developer Tools
- Diffusion
- Editor Effects
- EditorEffect
- Endoscopy
- Examples
- Exporter
- Filter
- Filtering
- IGT
- Informatics
- Legacy
- Libraries
- Machine Learning
- Margin Calculator
- Mesh Generation
- MeshGeneration
- Microscopy
- MultiVolume Support
- Pathology
- Perk Tutor
- Plastimatch
- Quantification
- Radiology
- Radiotherapy
- Registration
- Segmentation
- Sequences
- Slicelets
- SlicerProstate
- Surface Models
- TestCases
- Testing
- Ultrasound
- Uncategorized
- Utilities
- Vascular Modeling Toolkit
- Virtual Reality
- Web System Tools
- Wizards
- XNATSlicer
Astronomy
- AstroVolume (loadable, bundled in SlicerAstro extension)
- AstroReproject (loadable, bundled in SlicerAstro extension)
- AstroStatistics (loadable, bundled in SlicerAstro extension)
- AstroMasking (loadable, bundled in SlicerAstro extension)
- AstroSmoothing (loadable, bundled in SlicerAstro extension)
- AstroSampleData (scripted, bundled in SlicerAstro extension)
- AstroProfiles (loadable, bundled in SlicerAstro extension)
- AstroMomentMaps (loadable, bundled in SlicerAstro extension)
- AstroPVSlice (loadable, bundled in SlicerAstro extension)
- AstroPVDiagram (loadable, bundled in SlicerAstro extension)
- AstroModeling (loadable, bundled in SlicerAstro extension)
- AstroWelcome (loadable, bundled in SlicerAstro extension)
- SlicerAstroDataProbe (scripted, bundled in SlicerAstro extension)
Cardiac
- Philips4dUsDicomPatcher (scripted, bundled in SlicerHeart extension)
- ValveView (scripted, bundled in SlicerHeart extension)
Cardiac MRI Toolkit
- CMRToolkitPVAntrumCut (cli, bundled in Cardiac_MRI_Toolkit extension)
- CMRToolkitBooleanREMOVEFilter (cli, bundled in Cardiac_MRI_Toolkit extension)
- LASegmentationWorkflow (scripted, bundled in Cardiac_MRI_Toolkit extension)
- CMRToolkitRegistrationBRAINSFit (scripted, bundled in Cardiac_MRI_Toolkit extension)
- CMRToolkitAutomaticLeftAtrialScar (cli, bundled in Cardiac_MRI_Toolkit extension)
- CMRToolkitConnectedThresholdFilter (cli, bundled in Cardiac_MRI_Toolkit extension)
- CMRToolkitWizard (scripted, bundled in Cardiac_MRI_Toolkit extension)
- CMRToolkitIsolatedConnectedFilter (cli, bundled in Cardiac_MRI_Toolkit extension)
- CMRToolkitInhomogeneityCorrection (cli, bundled in Cardiac_MRI_Toolkit extension)
- CMRToolkitAxialDilate (cli, bundled in Cardiac_MRI_Toolkit extension)
- ScarVisualization (scripted, bundled in Cardiac_MRI_Toolkit extension)
- CMRToolkitRegistration (scripted, bundled in Cardiac_MRI_Toolkit extension)
- CMRToolkitLASegmentationGraphCuts (cli, bundled in Cardiac_MRI_Toolkit extension)
Chest Imaging Platform
- CIP_MIPViewer (scripted, bundled in Chest_Imaging_Platform extension)
- CIP_BodyComposition (scripted, bundled in Chest_Imaging_Platform extension)
- CIP_InteractiveLobeSegmentation (scripted, bundled in Chest_Imaging_Platform extension)
- CIP_TracheaStentPlanning (scripted, bundled in Chest_Imaging_Platform extension)
- CIP_LesionModel (scripted, bundled in Chest_Imaging_Platform extension)
- AirwayInspector (loadable, bundled in Chest_Imaging_Platform extension)
- CIP_PAARatio (scripted, bundled in Chest_Imaging_Platform extension)
- CIP_CalciumScoring (scripted, bundled in Chest_Imaging_Platform extension)
- CIP_ParenchymaAnalysis (scripted, bundled in Chest_Imaging_Platform extension)
- CIP_ParenchymaSubtypeTraining (scripted, bundled in Chest_Imaging_Platform extension)
- CIP_PointsLabelling (scripted, bundled in Chest_Imaging_Platform extension)
Toolkit
Particles
- ExtractParticlesFromChestRegionChestType (cli, bundled in Chest_Imaging_Platform extension)
- FilterVesselParticleData (cli, bundled in Chest_Imaging_Platform extension)
- RemoveParticlesFromParticlesDataSet (cli, bundled in Chest_Imaging_Platform extension)
- PerturbParticles (cli, bundled in Chest_Imaging_Platform extension)
- MergeParticleDataSets (cli, bundled in Chest_Imaging_Platform extension)
- FilterAirwayParticleData (cli, bundled in Chest_Imaging_Platform extension)
- FitLobeSurfaceModelsToParticleData (cli, bundled in Chest_Imaging_Platform extension)
- ClassifyFissureParticles (cli, bundled in Chest_Imaging_Platform extension)
- GenerateStenciledLabelMapFromParticles (cli, bundled in Chest_Imaging_Platform extension)
- FilterFissureParticleData (cli, bundled in Chest_Imaging_Platform extension)
Processing
- ResampleLabelMap (cli, bundled in Chest_Imaging_Platform extension)
- RescaleLabelMap (cli, bundled in Chest_Imaging_Platform extension)
- GenerateMedianFilteredImage (cli, bundled in Chest_Imaging_Platform extension)
- LabelMapFromRegionAndTypePoints (cli, bundled in Chest_Imaging_Platform extension)
- CropLung (cli, bundled in Chest_Imaging_Platform extension)
- GenerateNLMFilteredImage (cli, bundled in Chest_Imaging_Platform extension)
- RemoveChestTypeFromLabelMapUsingParticles (cli, bundled in Chest_Imaging_Platform extension)
- GenerateAtlasConvexHull (cli, bundled in Chest_Imaging_Platform extension)
- RemapLabelMap (cli, bundled in Chest_Imaging_Platform extension)
- ComputeFissureFeatureVectors (cli, bundled in Chest_Imaging_Platform extension)
- GenerateLobeSurfaceModels (cli, bundled in Chest_Imaging_Platform extension)
- FilterConnectedComponents (cli, bundled in Chest_Imaging_Platform extension)
- ExtractChestLabelMap (cli, bundled in Chest_Imaging_Platform extension)
- PerformMorphological (cli, bundled in Chest_Imaging_Platform extension)
- ExtractFissureBoundaryFromLobeMap (cli, bundled in Chest_Imaging_Platform extension)
- EnhanceFissuresInImage (cli, bundled in Chest_Imaging_Platform extension)
- GraphCutsOptimization (cli, bundled in Chest_Imaging_Platform extension)
- GenerateDistanceMapFromLabelMap (cli, bundled in Chest_Imaging_Platform extension)
- ResampleCT (cli, bundled in Chest_Imaging_Platform extension)
- ComputeFeatureStrength (cli, bundled in Chest_Imaging_Platform extension)
- ComputeDistanceMap (cli, bundled in Chest_Imaging_Platform extension)
- QualityControl (cli, bundled in Chest_Imaging_Platform extension)
- GenerateImageSubVolumes (cli, bundled in Chest_Imaging_Platform extension)
Quantification
- EvaluateLungLobeSegmentationResults (cli, bundled in Chest_Imaging_Platform extension)
- GetTransformationKappa (cli, bundled in Chest_Imaging_Platform extension)
- ReadWriteImageData (cli, bundled in Chest_Imaging_Platform extension)
- ComputeIntensityStatistics (cli, bundled in Chest_Imaging_Platform extension)
- ComputeCrossSectionalArea (cli, bundled in Chest_Imaging_Platform extension)
- GenerateParenchymaPhenotypes (cli, bundled in Chest_Imaging_Platform extension)
- LabelParticlesByChestRegionChestType (cli, bundled in Chest_Imaging_Platform extension)
- GetTransformationSimilarityMetric (cli, bundled in Chest_Imaging_Platform extension)
- GetTransformationKappa2D (cli, bundled in Chest_Imaging_Platform extension)
Registration
- Introduction to Registration (by Dominik Meier)
- RegisterLungAtlas (cli, bundled in Chest_Imaging_Platform extension)
- RegisterLabelMaps (cli, bundled in Chest_Imaging_Platform extension)
- RegisterCT (cli, bundled in Chest_Imaging_Platform extension)
Segmentation
- GenerateOtsuLungCast (cli, bundled in Chest_Imaging_Platform extension)
- SegmentLungAirways (cli, bundled in Chest_Imaging_Platform extension)
- SegmentLungLobes (cli, bundled in Chest_Imaging_Platform extension)
- GeneratePartialLungLabelMap (cli, bundled in Chest_Imaging_Platform extension)
- GenerateSimpleLungMask (cli, bundled in Chest_Imaging_Platform extension)
- SplitLeftLungRightLung (cli, bundled in Chest_Imaging_Platform extension)
- GenerateBinaryThinning3D (cli, bundled in Chest_Imaging_Platform extension)
- GenerateLesionSegmentation (cli, bundled in Chest_Imaging_Platform extension)
Utils
- ConvertDicom (cli, bundled in Chest_Imaging_Platform extension)
- RegionTypeLocationsToROIVolume (cli, bundled in Chest_Imaging_Platform extension)
- ReadVTKWriteNRRDs (cli, bundled in Chest_Imaging_Platform extension)
- GenerateModel (cli, bundled in Chest_Imaging_Platform extension)
- GenerateOverlayImages (cli, bundled in Chest_Imaging_Platform extension)
- ExecuteSystemCommand (cli, bundled in Chest_Imaging_Platform extension)
- GetStructuresInLabelMap (cli, bundled in Chest_Imaging_Platform extension)
- FindPatchMatch (cli, bundled in Chest_Imaging_Platform extension)
- ConvertChestRegionChestTypeToLabelMapValue (cli, bundled in Chest_Imaging_Platform extension)
- MaskOutLabelMapStructures (cli, bundled in Chest_Imaging_Platform extension)
- ReadNRRDsWriteVTK (cli, bundled in Chest_Imaging_Platform extension)
- ConvertLabelMapValueToChestRegionChestType (cli, bundled in Chest_Imaging_Platform extension)
- ReadWriteRegionAndTypePoints (cli, bundled in Chest_Imaging_Platform extension)
- MergeChestLabelMaps (cli, bundled in Chest_Imaging_Platform extension)
- ReadVidaWriteCIP (cli, bundled in Chest_Imaging_Platform extension)
- ReadDicomWriteTags (cli, bundled in Chest_Imaging_Platform extension)
- TransferRegionAndTypeIndicesToFromPoints (cli, bundled in Chest_Imaging_Platform extension)
CIP
- CIP_ (scripted, bundled in Chest_Imaging_Platform extension)
- CIP_Common (scripted, bundled in Chest_Imaging_Platform extension)
Converters
- QuadEdgeSurfaceMesher (cli, bundled in SlicerProstate extension)
- CropVolume (loadable, built-in)
- OrientScalarVolume (cli, built-in)
- ConvertVTK (cli, bundled in UKFTractography extension)
- VectorToScalarVolume (scripted, built-in)
- CreateDICOMSeries (cli, built-in)
- ParticlesDisplay (loadable, bundled in Chest_Imaging_Platform extension)
- RegionType (loadable, bundled in Chest_Imaging_Platform extension)
Developer Tools
- Cameras (loadable, built-in)
- ExecutionModelTour (cli, built-in)
- NodeModifiedStatistics (scripted, bundled in DebuggingTools extension)
- PyDevRemoteDebug (scripted, bundled in DebuggingTools extension)
- ExtensionWizard (scripted, built-in)
- NodeInfo (scripted, bundled in DebuggingTools extension)
- ImageMaker (cli, bundled in ImageMaker extension)
- ExtensionStats (scripted, bundled in DeveloperToolsForExtensions extension)
- DeveloperToolsForExtensions (scripted, bundled in DeveloperToolsForExtensions extension)
- EventBroker
- DoubleArrays (loadable, built-in)
DICOM Plugins
- DICOMParametricMapPlugin
- DicomUltrasoundPlugin
- DICOMSegmentationPlugin
- DICOMSlicerDataBundlePlugin
- DICOMTID1500Plugin
- DICOMPETSUVPlugin
- DICOMScalarVolumePlugin
- DICOMDiffusionVolumePlugin
- DICOMLongitudinalPETCTPlugin
- DicomSroImportPlugin
- DICOMRWVMPlugin
- DicomRtImportExportPlugin
- MultiVolumeImporterPlugin
Editor Extensions
- FastGrowCutEffect (scripted, bundled in FastGrowCutEffect extension)
- CarreraSliceEffect (scripted, bundled in CarreraSlice extension)
- QuickTCGAEffect (scripted, bundled in SlicerPathology extension)
- PETTumorSegmentationEffect (scripted, bundled in PETTumorSegmentation extension)
- BinaryWatershedEffect (scripted, bundled in IASEM extension)
- DoubleThresholdEffect (scripted, bundled in IASEM extension)
- ShortCutEffect (scripted, bundled in SlicerPathology extension)
Matlab
- MatlabModuleGenerator (loadable, bundled in MatlabBridge extension)
- MatlabCommander (cli, bundled in MatlabBridge extension)
Segment Editor Extensions
- SegmentEditorPETTumor (scripted, bundled in PETTumorSegmentation extension)
Utils
- SlicerProstate (scripted, bundled in SlicerProstate extension)
Diffusion
- DMRIInstall (scripted, built-in)
Diffusion Data Conversion
- DWIConvert (cli, built-in)
Diffusion Tensor Images
- ResampleDTIlogEuclidean (cli, bundled in ResampleDTIlogEuclidean extension)
Diffusion Weighted Images
- BRAINSDWICleanup (cli, built-in)
Import and Export
- DWIConvert (cli, built-in)
- DICOMTract_to_VTK (cli, bundled in SlicerDMRI extension)
- VTK_to_DICOMTract (cli, bundled in SlicerDMRI extension)
Process
- DiffusionWeightedVolumeMasking (cli, bundled in SlicerDMRI extension)
- DWIToDTIEstimation (cli, bundled in SlicerDMRI extension)
Quantify
- DiffusionTensorScalarMeasurements (cli, bundled in SlicerDMRI extension)
- FiberTractMeasurements (cli, bundled in SlicerDMRI extension)
Tractography
- TractographyInteractiveSeeding (loadable, bundled in SlicerDMRI extension)
- TractographyDisplay (loadable, bundled in SlicerDMRI extension)
- UKFTractography (cli, bundled in UKFTractography extension)
Region-based
- TractographyLabelMapSeeding (cli, bundled in SlicerDMRI extension)
- FiberBundleLabelSelect (cli, bundled in SlicerDMRI extension)
Utilities
- BRAINSDWICleanup (cli, built-in)
- ResampleDTIVolume (cli, built-in)
- FiberBundleToLabelMap (scripted, bundled in SlicerDMRI extension)
- ResampleScalarVectorDWIVolume (cli, built-in)
- DICOM2FullBrainTractography (scripted, bundled in SlicerDMRI extension)
Editor Effects
- WindowLevelEffect (scripted, bundled in WindowLevelEffect extension)
EditorEffect
- PETTumorSegmentation (loadable, bundled in PETTumorSegmentation extension)
Endoscopy
- Endoscopy (scripted, built-in)
Examples
- FastGrowCut (loadable, bundled in FastGrowCutEffect extension)
- QuickTCGA (loadable, bundled in SlicerPathology extension)
- FastGrowCutSegmenter (loadable, bundled in CarreraSlice extension)
- ShortCutCore (loadable, bundled in SlicerPathology extension)
- GraphCutInteractiveSegmenter (loadable, bundled in GraphCutSegment extension)
- CarreraSlice (loadable, bundled in CarreraSlice extension)
Exporter
- SlicerToKiwiExporter (scripted, bundled in SlicerToKiwiExporter extension)
Filter
- IslandRemoval (cli, built-in)
Filtering
- SegmentationSmoothing (cli, bundled in SlicerProstate extension)
- N4ITKBiasFieldCorrection (cli, built-in)
- ImageLabelCombine (cli, built-in)
- VotingBinaryHoleFillingImageFilter (cli, built-in)
- CheckerBoardFilter (cli, built-in)
- AstroSmoothing (loadable, bundled in SlicerAstro extension)
- ExtractSkeleton (cli, built-in)
- SimpleFilters (scripted, built-in)
- ThresholdScalarVolume (cli, built-in)
- HistogramMatching (cli, built-in)
Arithmetic
- MultiplyScalarVolumes (cli, built-in)
- AddScalarVolumes (cli, built-in)
- MaskScalarVolume (cli, built-in)
- SubtractScalarVolumes (cli, built-in)
- CastScalarVolume (cli, built-in)
- BlendVectorVolumes (cli, bundled in OpenCVExample extension)
Denoising
- CurvatureAnisotropicDiffusion (cli, built-in)
- GradientAnisotropicDiffusion (cli, built-in)
- MedianImageFilter (cli, built-in)
- GaussianBlurImageFilter (cli, built-in)
Morphology
- GrayscaleFillHoleImageFilter (cli, built-in)
- GrayscaleGrindPeakImageFilter (cli, built-in)
IGT
- Viewpoint (scripted, bundled in SlicerIGT extension)
- CollectFiducials (loadable, bundled in SlicerIGT extension)
- TransformFusion (loadable, bundled in SlicerIGT extension)
- GyroGuide (scripted, bundled in GyroGuide extension)
- PlusModelCatalogBrowser (scripted, bundled in SlicerIGT extension)
- CreateModels (loadable, bundled in SlicerIGT extension)
- NeedleFinder (scripted, bundled in NeedleFinder extension)
- TrackerStabilizer (loadable, bundled in TrackerStabilizer extension)
- PathExplorer (loadable, bundled in SlicerIGT extension)
- UltrasoundSnapshots (loadable, bundled in SlicerIGT extension)
- BreachWarning (loadable, bundled in SlicerIGT extension)
- FiducialRegistrationWizard (loadable, bundled in SlicerIGT extension)
- ModelRegistration (scripted, bundled in SlicerIGT extension)
- ResectionVolume (scripted, bundled in ResectionPlanner extension)
- PivotCalibration (loadable, bundled in SlicerIGT extension)
- VolumeResliceDriver (loadable, bundled in SlicerIGT extension)
- OpenIGTLinkRemote (loadable, bundled in SlicerIGT extension)
- FiducialsToModelRegistration (scripted, bundled in SlicerIGT extension)
- Watchdog (loadable, bundled in SlicerIGT extension)
- CornerAnnotation (scripted, bundled in CornerAnnotation extension)
- OpenIGTLinkIF (loadable, built-in)
- MarkupsToModel (loadable, bundled in SlicerIGT extension)
- iGyne (scripted, bundled in iGyne extension)
- PlusRemote (scripted, bundled in SlicerIGT extension)
Informatics
- tid1500writer (cli, bundled in DCMQI extension)
- mpReviewPreprocessor (scripted, bundled in mpReview extension)
- SEG2NRRD (cli)
- TCIABrowser (scripted, bundled in TCIABrowser extension)
- segimage2itkimage (cli, bundled in DCMQI extension)
- mpReview (scripted, bundled in mpReview extension)
- Tables (loadable, built-in)
- Data (loadable, built-in)
- DumpSEGFrame (cli)
- tid1500reader (cli, bundled in DCMQI extension)
- Terminologies (loadable, built-in)
- Units (loadable, built-in)
- DICOM (scripted, built-in)
- SampleData (scripted, built-in)
- Colors (loadable, built-in)
- CurveMaker (scripted, bundled in CurveMaker extension)
- Annotations (loadable, built-in)
- Markups (loadable, built-in)
- SubjectHierarchy (loadable, built-in)
- QuantitativeReporting (scripted, bundled in QuantitativeReporting extension)
Converters
- itkimage2paramap (cli, bundled in DCMQI extension)
- paramap2itkimage (cli, bundled in DCMQI extension)
- itkimage2segimage (cli, bundled in DCMQI extension)
- EncodeSEG (cli)
Legacy
Converters
- BSplineToDeformationField (cli, built-in)
Filtering
- OtsuThresholdImageFilter (cli, built-in)
- ResampleScalarVolume (cli, built-in)
Registration
- TestGridTransformRegistration (cli, built-in)
- ExpertAutomatedRegistration (cli, built-in)
Work in Progress
Diffusion Tensor
Test
- DiffusionTensorTest (cli, built-in)
Libraries
- OpenCV (loadable, bundled in SlicerOpenCV extension)
Machine Learning
Margin Calculator
- MarginCalculator (scripted, bundled in MarginCalculator extension)
- DoseMorphology (loadable, bundled in MarginCalculator extension)
- SyntheticRTDose (scripted, bundled in MarginCalculator extension)
Mesh Generation
- CleaverCLI (cli, bundled in CleaverExtension extension)
MeshGeneration
- BodyCentricCubicMesh (cli, bundled in CBC_3D_I2MConversion extension)
Microscopy
- IASEMImportSeries (cli, bundled in IASEM extension)
- IASEMImport (cli, bundled in IASEM extension)
- BinShrink (cli, bundled in IASEM extension)
- LabelObjectStatistics (scripted, bundled in IASEM extension)
- SpacingAwareCurvatureDiffusion (cli, bundled in IASEM extension)
MultiVolume Support
- MultiVolumeImporter (scripted, built-in)
- MultiVolumeExplorer (loadable, built-in)
Pathology
- SlicerPathology (scripted, bundled in SlicerPathology extension)
Perk Tutor
- PythonMetricsCalculator (scripted, bundled in PerkTutor extension)
- TransformRecorder (loadable, bundled in PerkTutor extension)
- PerkEvaluator (loadable, bundled in PerkTutor extension)
- WorkflowSegmentation (loadable, bundled in PerkTutor extension)
Plastimatch
- DicomSroExport (scripted, bundled in SlicerRT extension)
- PlmRegister (scripted, bundled in SlicerRT extension)
Registration
- plastimatch_slicer_bspline (cli, bundled in SlicerRT extension)
- plastimatch_slicer_landwarp (cli, bundled in SlicerRT extension)
Utilities
- PlastimatchPy (loadable, bundled in SlicerRT extension)
Quantification
- DSCMRIAnalysis (cli, bundled in DSCMRIAnalysis extension)
- PETLiverUptakeMeasurement (cli, bundled in PETLiverUptakeMeasurement extension)
- PETIndiC (scripted, bundled in PET-IndiC extension)
- Q3DC (scripted, bundled in Q3DC extension)
- HeterogeneityCAD (scripted, bundled in OpenCAD extension)
- ShapeQuantifier (scripted, bundled in ShapeQuantifier extension)
- QuantitativeIndicesCLI (cli, bundled in PET-IndiC extension)
- PETStandardUptakeValueComputation (cli, built-in)
- SUVFactorCalculator (cli, bundled in PETDICOMExtension extension)
- SpinalCurvatureMeasurement (scripted, bundled in Scoliosis extension)
- QuantitativeIndicesTool (scripted, bundled in PET-IndiC extension)
- SegmentStatistics (scripted, built-in)
- LabelStatistics (scripted, built-in)
- MeshStatistics (scripted, bundled in MeshStatisticsExtension extension)
- DWModeling (cli, bundled in SlicerProstate extension)
- BRAINSLabelStats (cli, built-in)
- PkModeling (cli, bundled in PkModeling extension)
- PETSUVImageMaker (cli, bundled in LongitudinalPETCT extension)
- DataProbe (scripted, built-in)
- ModelToModelDistance (cli, bundled in ModelToModelDistance extension)
- T1Mapping (cli, bundled in T1Mapping extension)
- SlicerAstroDataProbe (scripted, bundled in SlicerAstro extension)
- AnglePlanes (scripted, bundled in ShapeQuantifier extension)
- dPetBrainQuantification (scripted, bundled in PetSpectAnalysis extension)
- PickAndPaint (scripted, bundled in PickAndPaintExtension extension)
- QuantitativeReporting (scripted, bundled in QuantitativeReporting extension)
- DiceComputation (loadable, bundled in DiceComputation extension)
ChangeQuantification
- IntensityDifferenceMetric (cli, bundled in ChangeTracker extension)
Radiology
- SliceTracker (scripted, bundled in SliceTracker extension)
- SliceTrackerRegistration (scripted, bundled in SliceTracker extension)
- SliceTrackerZFrameRegistration (scripted, bundled in SliceTracker extension)
Radiotherapy
- Beams (loadable, bundled in SlicerRT extension)
- DvhComparison (scripted, bundled in SlicerRT extension)
- DoseVolumeHistogram (loadable, bundled in SlicerRT extension)
- DicomRtImportExport (loadable, bundled in SlicerRT extension)
- DoseAccumulation (loadable, bundled in SlicerRT extension)
- ExternalBeamPlanning (loadable, bundled in SlicerRT extension)
- SegmentComparison (loadable, bundled in SlicerRT extension)
- PlanarImage (loadable, bundled in SlicerRT extension)
- Isodose (loadable, bundled in SlicerRT extension)
- DoseComparison (loadable, bundled in SlicerRT extension)
- SegmentMorphology (loadable, bundled in SlicerRT extension)
- DicomSroImport (loadable, bundled in SlicerRT extension)
Registration
- Transforms (loadable, built-in)
- BRAINSResize (cli, built-in)
- PerformMetricTest (cli, built-in)
- LandmarkRegistration (scripted, built-in)
- PBNRR (cli, bundled in PBNRR extension)
- BRAINSResample (cli, built-in)
- BRAINSFit (cli, built-in)
CMF Registration
- ApplyMatrix (cli, bundled in CMFreg extension)
- LabelExtraction (cli, bundled in CMFreg extension)
- LabelAddition (cli, bundled in CMFreg extension)
- Downsize (cli, bundled in CMFreg extension)
- SurfaceRegistration (scripted, bundled in CMFreg extension)
Voxelbase Registration
- NonGrowing (cli, bundled in CMFreg extension)
- Growing (cli, bundled in CMFreg extension)
- MaskCreation (cli, bundled in CMFreg extension)
Label Registration
- DistanceMapBasedRegistration (scripted, bundled in SlicerProstate extension)
Specialized
- ACPCTransform (cli, built-in)
- FiducialRegistration (cli, built-in)
- BRAINSDemonWarp (cli, built-in)
- Reformat (loadable, built-in)
- ScatteredTransform (cli, bundled in ScatteredTransform extension)
- VBRAINSDemonWarp (cli, built-in)
Segmentation
- ROBEXBrainExtraction (cli, bundled in ROBEXBrainExtraction extension)
- EMSegmentQuick (loadable, built-in)
- VolumeClipWithModel (scripted, bundled in VolumeClip extension)
- ABC (cli, bundled in ABC extension)
- VolumeClipToLabel (scripted, bundled in SliceTracker extension)
- AirwaySegmentationCLI (cli, bundled in AirwaySegmentation extension)
- LAScarSegmenter (cli, bundled in LAScarSegmenter extension)
- SegmentEditor (scripted, built-in)
- AirwaySegmentation (scripted, bundled in AirwaySegmentation extension)
- SkullStripper (cli, bundled in SkullStripper extension)
- SegmentEditorFastMarching (scripted, bundled in SegmentEditorExtraEffects extension)
- SobolevSegmenter (cli, bundled in SobolevSegmenter extension)
- VolumeClipWithRoi (scripted, bundled in VolumeClip extension)
- SegmentCAD (scripted, bundled in OpenCAD extension)
- SwissSkullStripper (cli, bundled in SwissSkullStripper extension)
- SegmentEditorFloodFilling (scripted, bundled in SegmentEditorExtraEffects extension)
- Wasp (scripted, bundled in Wasp extension)
- Editor (scripted, built-in)
- SimpleRegionGrowingSegmentation (cli, built-in)
- EMSegment (loadable, built-in)
- QuantitativeReporting (scripted, bundled in QuantitativeReporting extension)
- IntensitySegmenter (cli, bundled in IntensitySegmenter extension)
- SegmentEditorWatershed (scripted, bundled in SegmentEditorExtraEffects extension)
Specialized
- BRAINSROIAuto (cli, built-in)
- RobustStatisticsSegmenter (cli, built-in)
- EMSegmentCommandLine (cli, built-in)
Sequences
- Sequences (loadable, bundled in Sequences extension)
- SequenceBrowser (loadable, bundled in Sequences extension)
- MetafileImporter (loadable, bundled in Sequences extension)
Slicelets
- FilmDosimetryAnalysis (scripted, bundled in FilmDosimetryAnalysis extension)
- GelDosimetryAnalysis (scripted, bundled in GelDosimetryAnalysis extension)
- GelDosimetryAnalysisAlgo (loadable, bundled in GelDosimetryAnalysis extension)
SlicerProstate
- ZFrameCalibration (cli, bundled in SliceTracker extension)
Surface Models
- SurfaceToolbox (scripted, built-in)
- GrayscaleModelMaker (cli, built-in)
- ModelMaker (cli, built-in)
- ModelToLabelMap (cli, built-in)
- MergeModels (cli, built-in)
- EasyClip (scripted, bundled in EasyClip extension)
- LabelMapSmoothing (cli, built-in)
- MeshToLabelMap (cli, bundled in MeshToLabelMap extension)
- ProbeVolumeWithModel (cli, built-in)
- TextureModel (scripted, bundled in SlicerIGT extension)
TestCases
- SEGExporterSelfTest
Testing
- CLI4Test
- ThresholdThreadingTest
- ScoliosisMonitoring (scripted, bundled in Scoliosis extension)
- SlicerMRBSaveRestoreCheckPathsTest
- CLIROITest (cli, built-in)
- PerformanceTests
- SlicerMRBMultipleSaveRestoreTest
- SlicerMRBTest
- SEGExporterSelfTest
- SelfTests
- SlicerMRBMultipleSaveRestoreLoopTest
IGT Tests
- BreachWarningSelfTest
- WatchdogSelfTest
SlicerRT Tests
- IGRTWorkflow_SelfTest
- BatchStructureSetConversion (scripted, bundled in SlicerRT extension)
TestCases
- AtlasTests
- AddStorableDataAfterSceneViewTest
- test_tractography_display
- SlicerTransformInteractionTest1
- RSNAQuantTutorial
- NeurosurgicalPlanningTutorialMarkupsSelfTest
- ChangeTrackerSelfTest
- FiducialLayoutSwitchBug1914
- GraphCutSegmentSelfTest
- SlicerBoundsTest
- UtilTest
- Charting (scripted, built-in)
- CardiacAgatstonMeasures (scripted, bundled in CardiacAgatstonMeasures extension)
- fiber_visibility_crash2438
- RSNAVisTutorial
- JRC2013Vis
- AddManyMarkupsFiducialTest
- CropVolumeSelfTest
- SliceLinkLogic (scripted, built-in)
- VolumeRenderingSceneClose (scripted, built-in)
- slicerCloseCrashBug2590
- CLIEventTest
- NsgPlanTracto (scripted, bundled in SlicerDMRI extension)
- MarkupsWidgetsSelfTest
- TablesSelfTest
- SlicerOrientationSelectorTest
- MarkupsInViewsSelfTest
- TwoCLIsInParallelTest
- SubjectHierarchyCorePluginsSelfTest
- SubjectHierarchyGenericSelfTest
- ScenePerformance (scripted, built-in)
- MarkupsInCompareViewersSelfTest
- sceneImport2428
- RSNA2012ProstateDemo
- DTINotReproducibleIssue3977
- TwoCLIsInARowTest
- ColorsScalarBarSelfTest
- BRAINSFitRigidRegistrationCrashIssue4139
- Slicer4Minute (scripted, built-in)
- ViewControllersSliceInterpolationBug1926
Ultrasound
- ScanConvertCurvilinearArray (cli, bundled in SlicerITKUltrasound extension)
- ScanConvertPhasedArray3D (cli, bundled in SlicerITKUltrasound extension)
- ScanConvertSliceSeries (cli, bundled in SlicerITKUltrasound extension)
Uncategorized
- ShapeQuantifierCore (scripted, bundled in ShapeQuantifier extension)
- DatabaseInteractorLib (scripted, bundled in DatabaseInteractor extension)
Utilities
- ScreenCapture (scripted, built-in)
- DataStore (loadable, built-in)
- DICOMPatcher (scripted, built-in)
- BRAINSStripRotation (cli, built-in)
- EMSegmentTransformToNewFormat (cli, built-in)
BRAINS
- BRAINSTransformConvert (cli, built-in)
Vascular Modeling Toolkit
- CenterlineComputation (scripted, bundled in VMTK extension)
- LevelSetSegmentation (scripted, bundled in VMTK extension)
- VesselnessFiltering (scripted, bundled in VMTK extension)
Virtual Reality
- VirtualReality (loadable, bundled in SlicerVirtualReality extension)
Web System Tools
- DatabaseInteractor (scripted, bundled in DatabaseInteractor extension)
Wizards
- CompareVolumes (scripted, built-in)
- ChangeTracker (scripted, bundled in ChangeTracker extension)
XNATSlicer
- XnatSlicer (scripted, bundled in XNATSlicer extension)
Modules by name
367 modules:
- ABC (cli, bundled in ABC extension)
- ACPCTransform (cli, built-in)
- AddScalarVolumes (cli, built-in)
- AirwayInspector (loadable, bundled in Chest_Imaging_Platform extension)
- AirwaySegmentation (scripted, bundled in AirwaySegmentation extension)
- AirwaySegmentationCLI (cli, bundled in AirwaySegmentation extension)
- AnglePlanes (scripted, bundled in ShapeQuantifier extension)
- Annotations (loadable, built-in)
- ApplyMatrix (cli, bundled in CMFreg extension)
- AstroMasking (loadable, bundled in SlicerAstro extension)
- AstroModeling (loadable, bundled in SlicerAstro extension)
- AstroMomentMaps (loadable, bundled in SlicerAstro extension)
- AstroProfiles (loadable, bundled in SlicerAstro extension)
- AstroPVDiagram (loadable, bundled in SlicerAstro extension)
- AstroPVSlice (loadable, bundled in SlicerAstro extension)
- AstroReproject (loadable, bundled in SlicerAstro extension)
- AstroSampleData (scripted, bundled in SlicerAstro extension)
- AstroSmoothing (loadable, bundled in SlicerAstro extension)
- AstroStatistics (loadable, bundled in SlicerAstro extension)
- AstroVolume (loadable, bundled in SlicerAstro extension)
- AstroWelcome (loadable, bundled in SlicerAstro extension)
- Beams (loadable, bundled in SlicerRT extension)
- BinShrink (cli, bundled in IASEM extension)
- BlendVectorVolumes (cli, bundled in OpenCVExample extension)
- BodyCentricCubicMesh (cli, bundled in CBC_3D_I2MConversion extension)
- BRAINSDemonWarp (cli, built-in)
- BRAINSDWICleanup (cli, built-in)
- BRAINSFit (cli, built-in)
- BRAINSLabelStats (cli, built-in)
- BRAINSResample (cli, built-in)
- BRAINSResize (cli, built-in)
- BRAINSROIAuto (cli, built-in)
- BRAINSStripRotation (cli, built-in)
- BRAINSTransformConvert (cli, built-in)
- BreachWarning (loadable, bundled in SlicerIGT extension)
- CarreraSlice (loadable, bundled in CarreraSlice extension)
- CastScalarVolume (cli, built-in)
- CenterlineComputation (scripted, bundled in VMTK extension)
- ChangeTracker (scripted, bundled in ChangeTracker extension)
- CheckerBoardFilter (cli, built-in)
- CIP_ (scripted, bundled in Chest_Imaging_Platform extension)
- CIP_BodyComposition (scripted, bundled in Chest_Imaging_Platform extension)
- CIP_CalciumScoring (scripted, bundled in Chest_Imaging_Platform extension)
- CIP_Common (scripted, bundled in Chest_Imaging_Platform extension)
- CIP_InteractiveLobeSegmentation (scripted, bundled in Chest_Imaging_Platform extension)
- CIP_LesionModel (scripted, bundled in Chest_Imaging_Platform extension)
- CIP_MIPViewer (scripted, bundled in Chest_Imaging_Platform extension)
- CIP_PAARatio (scripted, bundled in Chest_Imaging_Platform extension)
- CIP_ParenchymaAnalysis (scripted, bundled in Chest_Imaging_Platform extension)
- CIP_ParenchymaSubtypeTraining (scripted, bundled in Chest_Imaging_Platform extension)
- CIP_PointsLabelling (scripted, bundled in Chest_Imaging_Platform extension)
- CIP_TracheaStentPlanning (scripted, bundled in Chest_Imaging_Platform extension)
- ClassifyFissureParticles (cli, bundled in Chest_Imaging_Platform extension)
- CleaverCLI (cli, bundled in CleaverExtension extension)
- CMRToolkitAutomaticLeftAtrialScar (cli, bundled in Cardiac_MRI_Toolkit extension)
- CMRToolkitAxialDilate (cli, bundled in Cardiac_MRI_Toolkit extension)
- CMRToolkitBooleanREMOVEFilter (cli, bundled in Cardiac_MRI_Toolkit extension)
- CMRToolkitConnectedThresholdFilter (cli, bundled in Cardiac_MRI_Toolkit extension)
- CMRToolkitInhomogeneityCorrection (cli, bundled in Cardiac_MRI_Toolkit extension)
- CMRToolkitIsolatedConnectedFilter (cli, bundled in Cardiac_MRI_Toolkit extension)
- CMRToolkitLASegmentationGraphCuts (cli, bundled in Cardiac_MRI_Toolkit extension)
- CMRToolkitPVAntrumCut (cli, bundled in Cardiac_MRI_Toolkit extension)
- CMRToolkitRegistration (scripted, bundled in Cardiac_MRI_Toolkit extension)
- CMRToolkitRegistrationBRAINSFit (scripted, bundled in Cardiac_MRI_Toolkit extension)
- CMRToolkitWizard (scripted, bundled in Cardiac_MRI_Toolkit extension)
- CollectFiducials (loadable, bundled in SlicerIGT extension)
- Colors (loadable, built-in)
- CompareVolumes (scripted, built-in)
- ComputeCrossSectionalArea (cli, bundled in Chest_Imaging_Platform extension)
- ComputeDistanceMap (cli, bundled in Chest_Imaging_Platform extension)
- ComputeFeatureStrength (cli, bundled in Chest_Imaging_Platform extension)
- ComputeFissureFeatureVectors (cli, bundled in Chest_Imaging_Platform extension)
- ComputeIntensityStatistics (cli, bundled in Chest_Imaging_Platform extension)
- ConvertChestRegionChestTypeToLabelMapValue (cli, bundled in Chest_Imaging_Platform extension)
- ConvertDicom (cli, bundled in Chest_Imaging_Platform extension)
- ConvertLabelMapValueToChestRegionChestType (cli, bundled in Chest_Imaging_Platform extension)
- ConvertVTK (cli, bundled in UKFTractography extension)
- CornerAnnotation (scripted, bundled in CornerAnnotation extension)
- CreateDICOMSeries (cli, built-in)
- CreateModels (loadable, bundled in SlicerIGT extension)
- CropLung (cli, bundled in Chest_Imaging_Platform extension)
- CropVolume (loadable, built-in)
- CurvatureAnisotropicDiffusion (cli, built-in)
- CurveMaker (scripted, bundled in CurveMaker extension)
- Data (loadable, built-in)
- DatabaseInteractor (scripted, bundled in DatabaseInteractor extension)
- DatabaseInteractorLib (scripted, bundled in DatabaseInteractor extension)
- DataProbe (scripted, built-in)
- DataStore (loadable, built-in)
- DeepInfer (scripted, bundled in DeepInfer extension)
- DiceComputation (loadable, bundled in DiceComputation extension)
- DICOM (scripted, built-in)
- DICOM2FullBrainTractography (scripted, bundled in SlicerDMRI extension)
- DICOMPatcher (scripted, built-in)
- DicomRtImportExport (loadable, bundled in SlicerRT extension)
- DicomSroExport (scripted, bundled in SlicerRT extension)
- DicomSroImport (loadable, bundled in SlicerRT extension)
- DICOMTract_to_VTK (cli, bundled in SlicerDMRI extension)
- DiffusionTensorScalarMeasurements (cli, bundled in SlicerDMRI extension)
- DiffusionWeightedVolumeMasking (cli, bundled in SlicerDMRI extension)
- DistanceMapBasedRegistration (scripted, bundled in SlicerProstate extension)
- DMRIInstall (scripted, built-in)
- DoseAccumulation (loadable, bundled in SlicerRT extension)
- DoseComparison (loadable, bundled in SlicerRT extension)
- DoseMorphology (loadable, bundled in MarginCalculator extension)
- DoseVolumeHistogram (loadable, bundled in SlicerRT extension)
- Downsize (cli, bundled in CMFreg extension)
- dPetBrainQuantification (scripted, bundled in PetSpectAnalysis extension)
- DSCMRIAnalysis (cli, bundled in DSCMRIAnalysis extension)
- DumpSEGFrame (cli)
- DvhComparison (scripted, bundled in SlicerRT extension)
- DWIConvert (cli, built-in)
- DWIToDTIEstimation (cli, bundled in SlicerDMRI extension)
- DWModeling (cli, bundled in SlicerProstate extension)
- EasyClip (scripted, bundled in EasyClip extension)
- Editor (scripted, built-in)
- EMSegment (loadable, built-in)
- EMSegmentCommandLine (cli, built-in)
- EMSegmentQuick (loadable, built-in)
- EMSegmentTransformToNewFormat (cli, built-in)
- EncodeSEG (cli)
- Endoscopy (scripted, built-in)
- EnhanceFissuresInImage (cli, bundled in Chest_Imaging_Platform extension)
- EvaluateLungLobeSegmentationResults (cli, bundled in Chest_Imaging_Platform extension)
- ExecuteSystemCommand (cli, bundled in Chest_Imaging_Platform extension)
- ExternalBeamPlanning (loadable, bundled in SlicerRT extension)
- ExtractChestLabelMap (cli, bundled in Chest_Imaging_Platform extension)
- ExtractFissureBoundaryFromLobeMap (cli, bundled in Chest_Imaging_Platform extension)
- ExtractParticlesFromChestRegionChestType (cli, bundled in Chest_Imaging_Platform extension)
- ExtractSkeleton (cli, built-in)
- FastGrowCut (loadable, bundled in FastGrowCutEffect extension)
- FastGrowCutSegmenter (loadable, bundled in CarreraSlice extension)
- FiberBundleLabelSelect (cli, bundled in SlicerDMRI extension)
- FiberBundleToLabelMap (scripted, bundled in SlicerDMRI extension)
- FiberTractMeasurements (cli, bundled in SlicerDMRI extension)
- FiducialRegistration (cli, built-in)
- FiducialRegistrationWizard (loadable, bundled in SlicerIGT extension)
- FiducialsToModelRegistration (scripted, bundled in SlicerIGT extension)
- FilmDosimetryAnalysis (scripted, bundled in FilmDosimetryAnalysis extension)
- FilterAirwayParticleData (cli, bundled in Chest_Imaging_Platform extension)
- FilterConnectedComponents (cli, bundled in Chest_Imaging_Platform extension)
- FilterFissureParticleData (cli, bundled in Chest_Imaging_Platform extension)
- FilterVesselParticleData (cli, bundled in Chest_Imaging_Platform extension)
- FindPatchMatch (cli, bundled in Chest_Imaging_Platform extension)
- FitLobeSurfaceModelsToParticleData (cli, bundled in Chest_Imaging_Platform extension)
- GaussianBlurImageFilter (cli, built-in)
- GelDosimetryAnalysis (scripted, bundled in GelDosimetryAnalysis extension)
- GelDosimetryAnalysisAlgo (loadable, bundled in GelDosimetryAnalysis extension)
- GenerateAtlasConvexHull (cli, bundled in Chest_Imaging_Platform extension)
- GenerateBinaryThinning3D (cli, bundled in Chest_Imaging_Platform extension)
- GenerateDistanceMapFromLabelMap (cli, bundled in Chest_Imaging_Platform extension)
- GenerateImageSubVolumes (cli, bundled in Chest_Imaging_Platform extension)
- GenerateLesionSegmentation (cli, bundled in Chest_Imaging_Platform extension)
- GenerateLobeSurfaceModels (cli, bundled in Chest_Imaging_Platform extension)
- GenerateMedianFilteredImage (cli, bundled in Chest_Imaging_Platform extension)
- GenerateModel (cli, bundled in Chest_Imaging_Platform extension)
- GenerateNLMFilteredImage (cli, bundled in Chest_Imaging_Platform extension)
- GenerateOtsuLungCast (cli, bundled in Chest_Imaging_Platform extension)
- GenerateOverlayImages (cli, bundled in Chest_Imaging_Platform extension)
- GenerateParenchymaPhenotypes (cli, bundled in Chest_Imaging_Platform extension)
- GeneratePartialLungLabelMap (cli, bundled in Chest_Imaging_Platform extension)
- GenerateSimpleLungMask (cli, bundled in Chest_Imaging_Platform extension)
- GenerateStenciledLabelMapFromParticles (cli, bundled in Chest_Imaging_Platform extension)
- GetStructuresInLabelMap (cli, bundled in Chest_Imaging_Platform extension)
- GetTransformationKappa (cli, bundled in Chest_Imaging_Platform extension)
- GetTransformationKappa2D (cli, bundled in Chest_Imaging_Platform extension)
- GetTransformationSimilarityMetric (cli, bundled in Chest_Imaging_Platform extension)
- GradientAnisotropicDiffusion (cli, built-in)
- GraphCutInteractiveSegmenter (loadable, bundled in GraphCutSegment extension)
- GraphCutsOptimization (cli, bundled in Chest_Imaging_Platform extension)
- GrayscaleFillHoleImageFilter (cli, built-in)
- GrayscaleGrindPeakImageFilter (cli, built-in)
- GrayscaleModelMaker (cli, built-in)
- Growing (cli, bundled in CMFreg extension)
- GyroGuide (scripted, bundled in GyroGuide extension)
- HeterogeneityCAD (scripted, bundled in OpenCAD extension)
- HistogramMatching (cli, built-in)
- IASEMImport (cli, bundled in IASEM extension)
- IASEMImportSeries (cli, bundled in IASEM extension)
- iGyne (scripted, bundled in iGyne extension)
- ImageLabelCombine (cli, built-in)
- IntensityDifferenceMetric (cli, bundled in ChangeTracker extension)
- IntensitySegmenter (cli, bundled in IntensitySegmenter extension)
- IslandRemoval (cli, built-in)
- Isodose (loadable, bundled in SlicerRT extension)
- itkimage2paramap (cli, bundled in DCMQI extension)
- itkimage2segimage (cli, bundled in DCMQI extension)
- KUtil (scripted, bundled in CarreraSlice extension)
- LabelAddition (cli, bundled in CMFreg extension)
- LabelExtraction (cli, bundled in CMFreg extension)
- LabelMapFromRegionAndTypePoints (cli, bundled in Chest_Imaging_Platform extension)
- LabelMapSmoothing (cli, built-in)
- LabelObjectStatistics (scripted, bundled in IASEM extension)
- LabelParticlesByChestRegionChestType (cli, bundled in Chest_Imaging_Platform extension)
- LabelStatistics (scripted, built-in)
- LandmarkRegistration (scripted, built-in)
- LAScarSegmenter (cli, bundled in LAScarSegmenter extension)
- LASegmentationWorkflow (scripted, bundled in Cardiac_MRI_Toolkit extension)
- LevelSetSegmentation (scripted, bundled in VMTK extension)
- MarginCalculator (scripted, bundled in MarginCalculator extension)
- Markups (loadable, built-in)
- MarkupsToModel (loadable, bundled in SlicerIGT extension)
- MaskCreation (cli, bundled in CMFreg extension)
- MaskOutLabelMapStructures (cli, bundled in Chest_Imaging_Platform extension)
- MaskScalarVolume (cli, built-in)
- MedianImageFilter (cli, built-in)
- MergeChestLabelMaps (cli, bundled in Chest_Imaging_Platform extension)
- MergeModels (cli, built-in)
- MergeParticleDataSets (cli, bundled in Chest_Imaging_Platform extension)
- MeshStatistics (scripted, bundled in MeshStatisticsExtension extension)
- MeshToLabelMap (cli, bundled in MeshToLabelMap extension)
- MetafileImporter (loadable, bundled in Sequences extension)
- ModelMaker (cli, built-in)
- ModelRegistration (scripted, bundled in SlicerIGT extension)
- Models (loadable, built-in)
- ModelToLabelMap (cli, built-in)
- ModelToModelDistance (cli, bundled in ModelToModelDistance extension)
- mpReview (scripted, bundled in mpReview extension)
- mpReviewPreprocessor (scripted, bundled in mpReview extension)
- MultiplyScalarVolumes (cli, built-in)
- MultiVolumeExplorer (loadable, built-in)
- MultiVolumeImporter (scripted, built-in)
- N4ITKBiasFieldCorrection (cli, built-in)
- NeedleFinder (scripted, bundled in NeedleFinder extension)
- NonGrowing (cli, bundled in CMFreg extension)
- OpenCV (loadable, bundled in SlicerOpenCV extension)
- OpenIGTLinkIF (loadable, built-in)
- OpenIGTLinkRemote (loadable, bundled in SlicerIGT extension)
- OrientScalarVolume (cli, built-in)
- paramap2itkimage (cli, bundled in DCMQI extension)
- ParticlesDisplay (loadable, bundled in Chest_Imaging_Platform extension)
- PathExplorer (loadable, bundled in SlicerIGT extension)
- PBNRR (cli, bundled in PBNRR extension)
- PerformMetricTest (cli, built-in)
- PerformMorphological (cli, bundled in Chest_Imaging_Platform extension)
- PerkEvaluator (loadable, bundled in PerkTutor extension)
- PerturbParticles (cli, bundled in Chest_Imaging_Platform extension)
- PETIndiC (scripted, bundled in PET-IndiC extension)
- PETLiverUptakeMeasurement (cli, bundled in PETLiverUptakeMeasurement extension)
- PETStandardUptakeValueComputation (cli, built-in)
- PETSUVImageMaker (cli, bundled in LongitudinalPETCT extension)
- PETTumorSegmentation (loadable, bundled in PETTumorSegmentation extension)
- Philips4dUsDicomPatcher (scripted, bundled in SlicerHeart extension)
- PickAndPaint (scripted, bundled in PickAndPaintExtension extension)
- PivotCalibration (loadable, bundled in SlicerIGT extension)
- PkModeling (cli, bundled in PkModeling extension)
- PlanarImage (loadable, bundled in SlicerRT extension)
- plastimatch_slicer_bspline (cli, bundled in SlicerRT extension)
- plastimatch_slicer_landwarp (cli, bundled in SlicerRT extension)
- PlastimatchPy (loadable, bundled in SlicerRT extension)
- PlmRegister (scripted, bundled in SlicerRT extension)
- PlusModelCatalogBrowser (scripted, bundled in SlicerIGT extension)
- PlusRemote (scripted, bundled in SlicerIGT extension)
- ProbeVolumeWithModel (cli, built-in)
- PythonMetricsCalculator (scripted, bundled in PerkTutor extension)
- Q3DC (scripted, bundled in Q3DC extension)
- QuadEdgeSurfaceMesher (cli, bundled in SlicerProstate extension)
- QualityControl (cli, bundled in Chest_Imaging_Platform extension)
- QuantitativeIndicesCLI (cli, bundled in PET-IndiC extension)
- QuantitativeIndicesTool (scripted, bundled in PET-IndiC extension)
- QuantitativeReporting (scripted, bundled in QuantitativeReporting extension)
- QuickTCGA (loadable, bundled in SlicerPathology extension)
- ReadDicomWriteTags (cli, bundled in Chest_Imaging_Platform extension)
- ReadNRRDsWriteVTK (cli, bundled in Chest_Imaging_Platform extension)
- ReadVidaWriteCIP (cli, bundled in Chest_Imaging_Platform extension)
- ReadVTKWriteNRRDs (cli, bundled in Chest_Imaging_Platform extension)
- ReadWriteImageData (cli, bundled in Chest_Imaging_Platform extension)
- ReadWriteRegionAndTypePoints (cli, bundled in Chest_Imaging_Platform extension)
- Reformat (loadable, built-in)
- RegionType (loadable, bundled in Chest_Imaging_Platform extension)
- RegionTypeLocationsToROIVolume (cli, bundled in Chest_Imaging_Platform extension)
- RegisterCT (cli, bundled in Chest_Imaging_Platform extension)
- RegisterLabelMaps (cli, bundled in Chest_Imaging_Platform extension)
- RegisterLungAtlas (cli, bundled in Chest_Imaging_Platform extension)
- RemapLabelMap (cli, bundled in Chest_Imaging_Platform extension)
- RemoveChestTypeFromLabelMapUsingParticles (cli, bundled in Chest_Imaging_Platform extension)
- RemoveParticlesFromParticlesDataSet (cli, bundled in Chest_Imaging_Platform extension)
- ResampleCT (cli, bundled in Chest_Imaging_Platform extension)
- ResampleDTIlogEuclidean (cli, bundled in ResampleDTIlogEuclidean extension)
- ResampleDTIVolume (cli, built-in)
- ResampleLabelMap (cli, bundled in Chest_Imaging_Platform extension)
- ResampleScalarVectorDWIVolume (cli, built-in)
- RescaleLabelMap (cli, bundled in Chest_Imaging_Platform extension)
- ResectionVolume (scripted, bundled in ResectionPlanner extension)
- ROBEXBrainExtraction (cli, bundled in ROBEXBrainExtraction extension)
- RobustStatisticsSegmenter (cli, built-in)
- SampleData (scripted, built-in)
- ScanConvertCurvilinearArray (cli, bundled in SlicerITKUltrasound extension)
- ScanConvertPhasedArray3D (cli, bundled in SlicerITKUltrasound extension)
- ScanConvertSliceSeries (cli, bundled in SlicerITKUltrasound extension)
- ScarVisualization (scripted, bundled in Cardiac_MRI_Toolkit extension)
- ScatteredTransform (cli, bundled in ScatteredTransform extension)
- SceneViews (loadable, built-in)
- ScreenCapture (scripted, built-in)
- SEG2NRRD (cli)
- segimage2itkimage (cli, bundled in DCMQI extension)
- Segmentations (loadable, built-in)
- SegmentationSmoothing (cli, bundled in SlicerProstate extension)
- SegmentCAD (scripted, bundled in OpenCAD extension)
- SegmentComparison (loadable, bundled in SlicerRT extension)
- SegmentEditor (scripted, built-in)
- SegmentEditorFastMarching (scripted, bundled in SegmentEditorExtraEffects extension)
- SegmentEditorFloodFilling (scripted, bundled in SegmentEditorExtraEffects extension)
- SegmentEditorWatershed (scripted, bundled in SegmentEditorExtraEffects extension)
- SegmentLungAirways (cli, bundled in Chest_Imaging_Platform extension)
- SegmentLungLobes (cli, bundled in Chest_Imaging_Platform extension)
- SegmentMorphology (loadable, bundled in SlicerRT extension)
- SegmentStatistics (scripted, built-in)
- SequenceBrowser (loadable, bundled in Sequences extension)
- Sequences (loadable, bundled in Sequences extension)
- ShapeQuantifier (scripted, bundled in ShapeQuantifier extension)
- ShapeQuantifierCore (scripted, bundled in ShapeQuantifier extension)
- ShortCutCore (loadable, bundled in SlicerPathology extension)
- SimpleFilters (scripted, built-in)
- SimpleRegionGrowingSegmentation (cli, built-in)
- SkullStripper (cli, bundled in SkullStripper extension)
- SlicerAstroDataProbe (scripted, bundled in SlicerAstro extension)
- SlicerPathology (scripted, bundled in SlicerPathology extension)
- SlicerToKiwiExporter (scripted, bundled in SlicerToKiwiExporter extension)
- SliceTracker (scripted, bundled in SliceTracker extension)
- SliceTrackerRegistration (scripted, bundled in SliceTracker extension)
- SliceTrackerZFrameRegistration (scripted, bundled in SliceTracker extension)
- SobolevSegmenter (cli, bundled in SobolevSegmenter extension)
- SpacingAwareCurvatureDiffusion (cli, bundled in IASEM extension)
- SpinalCurvatureMeasurement (scripted, bundled in Scoliosis extension)
- SplitLeftLungRightLung (cli, bundled in Chest_Imaging_Platform extension)
- SubjectHierarchy (loadable, built-in)
- SubtractScalarVolumes (cli, built-in)
- SurfaceRegistration (scripted, bundled in CMFreg extension)
- SurfaceToolbox (scripted, built-in)
- SUVFactorCalculator (cli, bundled in PETDICOMExtension extension)
- SwissSkullStripper (cli, bundled in SwissSkullStripper extension)
- SyntheticRTDose (scripted, bundled in MarginCalculator extension)
- T1Mapping (cli, bundled in T1Mapping extension)
- Tables (loadable, built-in)
- TCIABrowser (scripted, bundled in TCIABrowser extension)
- Terminologies (loadable, built-in)
- TextureModel (scripted, bundled in SlicerIGT extension)
- ThresholdScalarVolume (cli, built-in)
- tid1500reader (cli, bundled in DCMQI extension)
- tid1500writer (cli, bundled in DCMQI extension)
- TrackerStabilizer (loadable, bundled in TrackerStabilizer extension)
- TractographyDisplay (loadable, bundled in SlicerDMRI extension)
- TractographyInteractiveSeeding (loadable, bundled in SlicerDMRI extension)
- TractographyLabelMapSeeding (cli, bundled in SlicerDMRI extension)
- TransferRegionAndTypeIndicesToFromPoints (cli, bundled in Chest_Imaging_Platform extension)
- TransformFusion (loadable, bundled in SlicerIGT extension)
- TransformRecorder (loadable, bundled in PerkTutor extension)
- Transforms (loadable, built-in)
- UKFTractography (cli, bundled in UKFTractography extension)
- UltrasoundSnapshots (loadable, bundled in SlicerIGT extension)
- Units (loadable, built-in)
- ValveView (scripted, bundled in SlicerHeart extension)
- VBRAINSDemonWarp (cli, built-in)
- VectorToScalarVolume (scripted, built-in)
- VesselnessFiltering (scripted, bundled in VMTK extension)
- VffFileReader (loadable, bundled in SlicerRT extension)
- ViewControllers (loadable, built-in)
- Viewpoint (scripted, bundled in SlicerIGT extension)
- VirtualReality (loadable, bundled in SlicerVirtualReality extension)
- VolumeClipToLabel (scripted, bundled in SliceTracker extension)
- VolumeClipWithModel (scripted, bundled in VolumeClip extension)
- VolumeClipWithRoi (scripted, bundled in VolumeClip extension)
- VolumeRendering (loadable, built-in)
- VolumeResliceDriver (loadable, bundled in SlicerIGT extension)
- Volumes (loadable, built-in)
- VotingBinaryHoleFillingImageFilter (cli, built-in)
- VTK_to_DICOMTract (cli, bundled in SlicerDMRI extension)
- Wasp (scripted, bundled in Wasp extension)
- Watchdog (loadable, bundled in SlicerIGT extension)
- Welcome (loadable, built-in)
- WindowLevelEffect (scripted, bundled in WindowLevelEffect extension)
- WorkflowSegmentation (loadable, bundled in PerkTutor extension)
- XnatSlicer (scripted, bundled in XNATSlicer extension)
- ZFrameCalibration (cli, bundled in SliceTracker extension)
