Latest revision as of 02:40, 27 November 2019

List of extensions known to be broken

Modules by category

36 categories:

BRAINS
- Label Statistics
Cardiac MRI Toolkit
CMF Registration
- Voxelbase Registration
Converters
Developer Tools
- DICOM Plugins
- Editor Extensions
- Matlab
Diffusion
- Diffusion Data Conversion
- Diffusion Tensor Images
- Diffusion Weighted Images
- Fiber Analysis
- Tractography
Editor Effects
Editor Effect
Endoscopy
Examples
Exporter
Filtering
- Arithmetic
- Denoising
- Morphology
IGT
Informatics
Legacy
- Converters
- Diffusion
  - Denoising
  - Diffusion Data Conversion
- Filtering
- Registration
- Work in Progress
  - Diffusion Tensor
    - Test
Mesh Generation
Mesh Generation
Microscopy
Multi Volume Support
Perk Tutor
Plastimatch
- Registration
- Utilities
Quantification
- Change Quantification
Radiotherapy
Registration
- Label Registration
- Specialized
Segmentation
- Specialized
Sequences
Shape Analysis
Slicelets
Surface Models
Testing
- IGT Tests
- Test Cases
Unspecified
Utilities
- BRAINS
Vascular Modeling Toolkit
Wizards
Work in Progress
- Converters
- Informatics
  - Test Cases
XNATSlicer

BRAINS

LabelStatistics

BRAINSLabel Stats (cli, built-in)

Cardiac MRI Toolkit

CMRToolkit Connected Threshold Filter (cli, bundled in Cardiac MRI Toolkit extension)
CMRToolkit Isolated Connected Filter (cli, bundled in Cardiac MRI Toolkit extension)
CMRToolkit Wizard (scripted, bundled in Cardiac MRI Toolkit extension)
CMRToolkit Inhomogeneity Correction (cli, bundled in Cardiac MRI Toolkit extension)
CMRToolkit PVAntrum Cut (cli, bundled in Cardiac MRI Toolkit extension)
CMRToolkit Axial Dilate (cli, bundled in Cardiac MRI Toolkit extension)
Scar Visualization (scripted, bundled in Cardiac MRI Toolkit extension)
CMRToolkit Boolean REMOVEFilter (cli, bundled in Cardiac MRI Toolkit extension)
LASegmentation Workflow (scripted, bundled in Cardiac MRI Toolkit extension)
CMRToolkit Automatic Left Atrial Scar (cli, bundled in Cardiac MRI Toolkit extension)
CMRToolkit Registration (scripted, bundled in Cardiac MRI Toolkit extension)
CMRToolkit Registration BRAINSFit (scripted, bundled in Cardiac MRI Toolkit extension)
CMRToolkit LASegmentation Graph Cuts (cli, bundled in Cardiac MRI Toolkit extension)

CMF Registration

Apply Matrix (cli, bundled in CMFreg extension)
Landmark Registration (scripted, bundled in CMFreg extension)
Surface Registration (scripted, bundled in CMFreg extension)
Label Extraction (cli, bundled in CMFreg extension)
Label Addition (cli, bundled in CMFreg extension)
Downsize (cli, bundled in CMFreg extension)

Voxelbase Registration

Mask Creation (cli, bundled in CMFreg extension)
Non Growing (cli, bundled in CMFreg extension)
Growing (cli, bundled in CMFreg extension)

Converters

Vector To Scalar Volume (scripted, built-in)
Crop Volume (loadable, built-in)
Orient Scalar Volume (cli, built-in)
Quad Edge Surface Mesher (cli, bundled in Slicer Prostate extension)
Create DICOMSeries (cli, built-in)

Developer Tools

Event Broker
Execution Model Tour (cli, built-in)
Double Arrays (loadable, built-in)
Py Dev Remote Debug (scripted, bundled in Py Dev Remote Debug extension)
Cameras (loadable, built-in)
Developer Tools For Extensions (scripted, bundled in Developer Tools For Extensions extension)
Extension Wizard (scripted, built-in)
Image Maker (cli, bundled in Image Maker extension)

DICOM Plugins

DICOMLongitudinal PETCTPlugin
DICOMRWVMPlugin
Multi Volume Importer Plugin
DICOMPETSUVPlugin
DICOMDiffusion Volume Plugin
Dicom Rt Import Export Plugin
DICOMSegmentation Plugin
Dicom Sro Import Plugin
DICOMScalar Volume Plugin
DICOMSlicer Data Bundle Plugin

Editor Extensions

Binary Watershed Effect (scripted, bundled in IASEM extension)
Fast Grow Cut Effect (scripted, bundled in Fast Grow Cut Effect extension)
Carrera Slice Effect (scripted, bundled in Carrera Slice extension)
Double Threshold Effect (scripted, bundled in IASEM extension)
PETTumor Segmentation Effect (scripted, bundled in PETTumor Segmentation extension)

Matlab

Matlab Commander (cli, bundled in Matlab Bridge extension)
Matlab Module Generator (loadable, bundled in Matlab Bridge extension)

Diffusion

Tractography Display (loadable, built-in)
DICOM2Full Brain Tractography (scripted, built-in)

Diffusion Data Conversion

DWIConvert (cli, built-in)

Diffusion Tensor Images

Resample DTIVolume (cli, built-in)
Diffusion Tensor Scalar Measurements (cli, built-in)
Tractography Label Map Seeding (cli, built-in)
Tractography Interactive Seeding (loadable, built-in)

Diffusion Weighted Images

DWIRician LMMSEFilter (cli, built-in)
Resample Scalar Vector DWIVolume (cli, built-in)
DWITo DTIEstimation (cli, built-in)
DWIJoint Rician LMMSEFilter (cli, built-in)
Finsler Backtracing (cli, bundled in Finsler Tractography extension)
Finsler Tractography (cli, bundled in Finsler Tractography extension)
Diffusion Weighted Volume Masking (cli, built-in)

FiberAnalysis

Fiber Compare (cli, bundled in DTIAtlas Fiber Analyzer extension)
DTIAtlas Fiber Analyzer (cli, bundled in DTIAtlas Fiber Analyzer extension)
Merge Stat With Fiber (cli, bundled in DTIAtlas Fiber Analyzer extension)
dtitractstat (cli, bundled in DTIAtlas Fiber Analyzer extension)

Tractography

Fiber Bundle To Label Map (scripted, built-in)
Fiber Tract Measurements (cli, built-in)
Fiber Bundle Label Select (cli, built-in)

Editor Effects

Window Level Effect (scripted, bundled in Window Level Effect extension)

EditorEffect

PETTumor Segmentation (loadable, bundled in PETTumor Segmentation extension)

Endoscopy

Endoscopy (scripted, built-in)

Examples

Fast Grow Cut (loadable, bundled in Fast Grow Cut Effect extension)
Fast Grow Cut Segmenter (loadable, bundled in Carrera Slice extension)
Carrera Slice (loadable, bundled in Carrera Slice extension)

Exporter

Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)

Filtering

Extract Skeleton (cli, built-in)
Threshold Scalar Volume (cli, built-in)
Segmentation Smoothing (cli, bundled in Slicer Prostate extension)
N4ITKBias Field Correction (cli, built-in)
Simple Filters (scripted, built-in)
Image Label Combine (cli, built-in)
Voting Binary Hole Filling Image Filter (cli, built-in)
Histogram Matching (cli, built-in)
Checker Board Filter (cli, built-in)

IGT

Light Weight Robot IGT (loadable, bundled in Light Weight Robot IGT extension)
Volume Reslice Driver (loadable, bundled in Slicer IGT extension)
Collect Fiducials (loadable, bundled in Slicer IGT extension)
Create Models (loadable, bundled in Slicer IGT extension)
Open IGTLink IF (loadable, built-in)
Tracker Stabilizer (loadable, bundled in Tracker Stabilizer extension)
Path Explorer (loadable, bundled in Slicer IGT extension)
Ultrasound Snapshots (loadable, bundled in Slicer IGT extension)
Transform Fusion (loadable, bundled in Slicer IGT extension)
Breach Warning (loadable, bundled in Slicer IGT extension)
Markups To Model (loadable, bundled in Slicer IGT extension)
Gyro Guide (scripted, bundled in Gyro Guide extension)
Fiducial Registration Wizard (loadable, bundled in Slicer IGT extension)
Watchdog (loadable, bundled in Slicer IGT extension)
Open IGTLink Remote (loadable, bundled in Slicer IGT extension)
Plus Remote (scripted, bundled in Slicer IGT extension)
i Gyne (scripted, bundled in i Gyne extension)
Model Registration (scripted, bundled in Slicer IGT extension)
Fiducials To Model Registration (scripted, bundled in Slicer IGT extension)
Needle Finder (scripted, bundled in Needle Finder extension)
Pivot Calibration (loadable, bundled in Slicer IGT extension)
Corner Annotation (scripted, bundled in Corner Annotation extension)

Informatics

Annotations (loadable, built-in)
Markups (loadable, built-in)
Units (loadable, built-in)
DICOM (scripted, built-in)
Sample Data (scripted, built-in)
Data (loadable, built-in)
Colors (loadable, built-in)
Curve Maker (scripted, bundled in Curve Maker extension)
Subject Hierarchy (loadable, built-in)
TCIABrowser (scripted, bundled in TCIABrowser extension)

Legacy

Converters

BSpline To Deformation Field (cli, built-in)

Diffusion

Denoising

DWIUnbiased Non Local Means Filter (cli, built-in)

Diffusion Data Conversion

DTIimport (cli, built-in)
DTIexport (cli, built-in)

Filtering

Otsu Threshold Image Filter (cli, built-in)
Resample Scalar Volume (cli, built-in)

Registration

Test Grid Transform Registration (cli, built-in)
Expert Automated Registration (cli, built-in)

Work in Progress

Diffusion Tensor

Test

Diffusion Tensor Test (cli, built-in)

Mesh Generation

Cleaver CLI (cli, bundled in Cleaver Extension extension)

MeshGeneration

Body Centric Cubic Mesh (cli, bundled in CBC 3D I2MConversion extension)
Mesh Compression (cli, bundled in CBC 3D I2MConversion extension)

Microscopy

Bin Shrink (cli, bundled in IASEM extension)
Label Object Statistics (scripted, bundled in IASEM extension)
Spacing Aware Curvature Diffusion (cli, bundled in IASEM extension)
IASEMImport (cli, bundled in IASEM extension)
IASEMImport Series (cli, bundled in IASEM extension)

MultiVolume Support

Multi Volume Explorer (loadable, built-in)
Multi Volume Importer (scripted, built-in)

Perk Tutor

Python Metrics Calculator (scripted, bundled in Perk Tutor extension)
Workflow Segmentation (loadable, bundled in Perk Tutor extension)
Transform Recorder (loadable, bundled in Perk Tutor extension)
Perk Evaluator (loadable, bundled in Perk Tutor extension)

Plastimatch

Dicom Sro Export (scripted, bundled in Slicer RT extension)
Plm Register (scripted, bundled in Slicer RT extension)

Registration

plastimatch slicer bspline (cli, bundled in Slicer RT extension)
plastimatch slicer landwarp (cli, bundled in Slicer RT extension)

Utilities

Plastimatch Py (loadable, bundled in Slicer RT extension)

Quantification

Quantitative Indices CLI (cli, bundled in PET-Indi C extension)
PETStandard Uptake Value Computation (cli, built-in)
SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
Spinal Curvature Measurement (scripted, bundled in Scoliosis extension)
PETIndi C (scripted, bundled in PET-Indi C extension)
d Pet Brain Quantification (scripted, bundled in Pet Spect Analysis extension)
Pk Modeling (cli, bundled in Pk Modeling extension)
Heterogeneity CAD (scripted, bundled in Open CAD extension)
Label Statistics (scripted, built-in)
T1 Mapping (scripted, bundled in T1 Mapping extension)
PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
Dice Computation (loadable, bundled in Dice Computation extension)
Data Probe (scripted, built-in)
Quantitative Indices Tool (scripted, bundled in PET-Indi C extension)

ChangeQuantification

Intensity Difference Metric (cli, bundled in Change Tracker extension)

Radiotherapy

Beams (loadable, bundled in Slicer RT extension)
Dvh Comparison (scripted, bundled in Slicer RT extension)
Isodose (loadable, bundled in Slicer RT extension)
Dose Accumulation (loadable, bundled in Slicer RT extension)
Dicom Sro Import (loadable, bundled in Slicer RT extension)
Planar Image (loadable, bundled in Slicer RT extension)

Registration

BRAINSResample (cli, built-in)
Transforms (loadable, built-in)
BRAINSResize (cli, built-in)
Perform Metric Test (cli, built-in)
BRAINSFit (cli, built-in)
PBNRR (cli, bundled in PBNRR extension)

Label Registration

Distance Map Based Registration (scripted, bundled in Slicer Prostate extension)

Specialized

ACPCTransform (cli, built-in)
Fiducial Registration (cli, built-in)
VBRAINSDemon Warp (cli, built-in)
BRAINSDemon Warp (cli, built-in)
Reformat (loadable, built-in)

Segmentation

Airway Segmentation (scripted, bundled in Airway Segmentation extension)
Editor (scripted, built-in)
EMSegment Quick (loadable, built-in)
Skull Stripper (cli, bundled in Skull Stripper extension)
Simple Region Growing Segmentation (cli, built-in)
EMSegment (loadable, built-in)
Segment CAD (scripted, bundled in Open CAD extension)
Airway Segmentation CLI (cli, bundled in Airway Segmentation extension)
LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
Sobolev Segmenter (cli, bundled in Sobolev Segmenter extension)
Volume Clip With Model (scripted, bundled in Volume Clip extension)
Wasp (scripted, bundled in Wasp extension)
Swiss Skull Stripper (cli, bundled in Swiss Skull Stripper extension)
Intensity Segmenter (cli, bundled in Intensity Segmenter extension)

Specialized

EMSegment Command Line (cli, built-in)
Robust Statistics Segmenter (cli, built-in)
BRAINSROIAuto (cli, built-in)

Sequences

Metafile Importer (loadable, bundled in Sequences extension)
Sequence Browser (loadable, bundled in Sequences extension)
Sequences (loadable, bundled in Sequences extension)

Shape Analysis

Mesh To Label Map (cli, bundled in Mesh To Label Map extension)

Slicelets

Gel Dosimetry Analysis Algo (loadable, bundled in Gel Dosimetry Analysis extension)

Surface Models

Model To Label Map (cli, built-in)
Probe Volume With Model (cli, built-in)
Merge Models (cli, built-in)
Surface Toolbox (scripted, built-in)
Grayscale Model Maker (cli, built-in)
Label Map Smoothing (cli, built-in)
Model Maker (cli, built-in)

Testing

Slicer MRBTest
Self Tests
CLIROITest (cli, built-in)
CLI4Test
Threshold Threading Test
Scoliosis Monitoring (scripted, bundled in Scoliosis extension)
Performance Tests

IGT Tests

Watchdog Self Test
Breach Warning Self Test

TestCases

Slice Link Logic (scripted, built-in)
Atlas Tests
RSNAQuant Tutorial
Volume Rendering Scene Close (scripted, built-in)
test tractography display
slicer Close Crash Bug2590
Subject Hierarchy Generic Self Test
Charting (scripted, built-in)
Scene Performance (scripted, built-in)
Neurosurgical Planning Tutorial Markups Self Test
Markups In Compare Viewers Self Test
Cardiac Agatston Measures (scripted, bundled in Cardiac Agaston Measures extension)
fiber visibility crash2438
scene Import2428
RSNAVis Tutorial
JRC2013Vis
RSNA2012Prostate Demo
Add Many Markups Fiducial Test
Colors Scalar Bar Self Test
Markups In Views Self Test
View Controllers Slice Interpolation Bug1926
Change Tracker Self Test
Fiducial Layout Switch Bug1914
Subject Hierarchy Core Plugins Self Test
Slicer4Minute (scripted, built-in)
Crop Volume Self Test
label Toggle Bug2049

Unspecified

BRAINSDWICleanup (cli, built-in)

Utilities

Thingiverse Browser (scripted, bundled in Thingiverse Browser extension)
BRAINSStrip Rotation (cli, built-in)
EMSegment Transform To New Format (cli, built-in)
Data Store (loadable, built-in)

BRAINS

BRAINSTransform Convert (cli, built-in)

Vascular Modeling Toolkit

Vesselness Filtering (scripted, bundled in VMTK extension)
Centerline Computation (scripted, bundled in VMTK extension)
Level Set Segmentation (scripted, bundled in VMTK extension)

Wizards

Compare Volumes (scripted, bundled in CMFreg extension)
Change Tracker (scripted, bundled in Change Tracker extension)

Work in Progress

Longitudinal PETCT (loadable, bundled in Longitudinal PETCT extension)

Converters

Label To DICOMSEGConverter (scripted, bundled in Reporting extension)

Informatics

Reporting (loadable, bundled in Reporting extension)

TestCases

Reporting Self Test
Label To DICOMSEGConverter Self Test

XNATSlicer

Xnat Slicer (scripted, bundled in XNATSlicer extension)

Modules by name

212 modules:

ACPCTransform (cli, built-in)
Add Scalar Volumes (cli, built-in)
Airway Segmentation (scripted, bundled in Airway Segmentation extension)
Airway Segmentation CLI (cli, bundled in Airway Segmentation extension)
Annotations (loadable, built-in)
Apply Matrix (cli, bundled in CMFreg extension)
Beams (loadable, bundled in Slicer RT extension)
Bin Shrink (cli, bundled in IASEM extension)
Body Centric Cubic Mesh (cli, bundled in CBC 3D I2MConversion extension)
BRAINSDemon Warp (cli, built-in)
BRAINSDWICleanup (cli, built-in)
BRAINSFit (cli, built-in)
BRAINSLabel Stats (cli, built-in)
BRAINSResample (cli, built-in)
BRAINSResize (cli, built-in)
BRAINSROIAuto (cli, built-in)
BRAINSStrip Rotation (cli, built-in)
BRAINSTransform Convert (cli, built-in)
Breach Warning (loadable, bundled in Slicer IGT extension)
Carrera Slice (loadable, bundled in Carrera Slice extension)
Cast Scalar Volume (cli, built-in)
Centerline Computation (scripted, bundled in VMTK extension)
Change Tracker (scripted, bundled in Change Tracker extension)
Checker Board Filter (cli, built-in)
Cleaver CLI (cli, bundled in Cleaver Extension extension)
CMRToolkit Automatic Left Atrial Scar (cli, bundled in Cardiac MRI Toolkit extension)
CMRToolkit Axial Dilate (cli, bundled in Cardiac MRI Toolkit extension)
CMRToolkit Boolean REMOVEFilter (cli, bundled in Cardiac MRI Toolkit extension)
CMRToolkit Connected Threshold Filter (cli, bundled in Cardiac MRI Toolkit extension)
CMRToolkit Inhomogeneity Correction (cli, bundled in Cardiac MRI Toolkit extension)
CMRToolkit Isolated Connected Filter (cli, bundled in Cardiac MRI Toolkit extension)
CMRToolkit LASegmentation Graph Cuts (cli, bundled in Cardiac MRI Toolkit extension)
CMRToolkit PVAntrum Cut (cli, bundled in Cardiac MRI Toolkit extension)
CMRToolkit Registration (scripted, bundled in Cardiac MRI Toolkit extension)
CMRToolkit Registration BRAINSFit (scripted, bundled in Cardiac MRI Toolkit extension)
CMRToolkit Wizard (scripted, bundled in Cardiac MRI Toolkit extension)
Collect Fiducials (loadable, bundled in Slicer IGT extension)
Colors (loadable, built-in)
Compare Volumes (scripted, bundled in CMFreg extension)
Corner Annotation (scripted, bundled in Corner Annotation extension)
Create DICOMSeries (cli, built-in)
Create Models (loadable, bundled in Slicer IGT extension)
Crop Volume (loadable, built-in)
Curvature Anisotropic Diffusion (cli, built-in)
Curve Maker (scripted, bundled in Curve Maker extension)
Data (loadable, built-in)
Data Probe (scripted, built-in)
Data Store (loadable, built-in)
Dice Computation (loadable, bundled in Dice Computation extension)
DICOM (scripted, built-in)
DICOM2Full Brain Tractography (scripted, built-in)
Dicom Sro Export (scripted, bundled in Slicer RT extension)
Dicom Sro Import (loadable, bundled in Slicer RT extension)
Diffusion Tensor Scalar Measurements (cli, built-in)
Diffusion Weighted Volume Masking (cli, built-in)
Distance Map Based Registration (scripted, bundled in Slicer Prostate extension)
Dose Accumulation (loadable, bundled in Slicer RT extension)
Downsize (cli, bundled in CMFreg extension)
d Pet Brain Quantification (scripted, bundled in Pet Spect Analysis extension)
DTIAtlas Fiber Analyzer (cli, bundled in DTIAtlas Fiber Analyzer extension)
dtitractstat (cli, bundled in DTIAtlas Fiber Analyzer extension)
Dvh Comparison (scripted, bundled in Slicer RT extension)
DWIConvert (cli, built-in)
DWIJoint Rician LMMSEFilter (cli, built-in)
DWIRician LMMSEFilter (cli, built-in)
DWITo DTIEstimation (cli, built-in)
Editor (scripted, built-in)
EMSegment (loadable, built-in)
EMSegment Command Line (cli, built-in)
EMSegment Quick (loadable, built-in)
EMSegment Transform To New Format (cli, built-in)
Endoscopy (scripted, built-in)
Extract Skeleton (cli, built-in)
Fast Grow Cut (loadable, bundled in Fast Grow Cut Effect extension)
Fast Grow Cut Segmenter (loadable, bundled in Carrera Slice extension)
Fiber Bundle Label Select (cli, built-in)
Fiber Bundle To Label Map (scripted, built-in)
Fiber Compare (cli, bundled in DTIAtlas Fiber Analyzer extension)
Fiber Tract Measurements (cli, built-in)
Fiducial Registration (cli, built-in)
Fiducial Registration Wizard (loadable, bundled in Slicer IGT extension)
Fiducials To Model Registration (scripted, bundled in Slicer IGT extension)
Finsler Backtracing (cli, bundled in Finsler Tractography extension)
Finsler Tractography (cli, bundled in Finsler Tractography extension)
Gaussian Blur Image Filter (cli, built-in)
Gel Dosimetry Analysis Algo (loadable, bundled in Gel Dosimetry Analysis extension)
Gradient Anisotropic Diffusion (cli, built-in)
Grayscale Fill Hole Image Filter (cli, built-in)
Grayscale Grind Peak Image Filter (cli, built-in)
Grayscale Model Maker (cli, built-in)
Growing (cli, bundled in CMFreg extension)
Gyro Guide (scripted, bundled in Gyro Guide extension)
Heterogeneity CAD (scripted, bundled in Open CAD extension)
Histogram Matching (cli, built-in)
IASEMImport (cli, bundled in IASEM extension)
IASEMImport Series (cli, bundled in IASEM extension)
i Gyne (scripted, bundled in i Gyne extension)
Image Label Combine (cli, built-in)
Intensity Difference Metric (cli, bundled in Change Tracker extension)
Intensity Segmenter (cli, bundled in Intensity Segmenter extension)
Isodose (loadable, bundled in Slicer RT extension)
KUtil (scripted, bundled in Carrera Slice extension)
Label Addition (cli, bundled in CMFreg extension)
Label Extraction (cli, bundled in CMFreg extension)
Label Map Smoothing (cli, built-in)
Label Object Statistics (scripted, bundled in IASEM extension)
Label Statistics (scripted, built-in)
Label To DICOMSEGConverter (scripted, bundled in Reporting extension)
Landmark Registration (scripted, bundled in CMFreg extension)
LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
LASegmentation Workflow (scripted, bundled in Cardiac MRI Toolkit extension)
Level Set Segmentation (scripted, bundled in VMTK extension)
Light Weight Robot IGT (loadable, bundled in Light Weight Robot IGT extension)
Longitudinal PETCT (loadable, bundled in Longitudinal PETCT extension)
Markups (loadable, built-in)
Markups To Model (loadable, bundled in Slicer IGT extension)
Mask Creation (cli, bundled in CMFreg extension)
Mask Scalar Volume (cli, built-in)
Median Image Filter (cli, built-in)
Merge Models (cli, built-in)
Merge Stat With Fiber (cli, bundled in DTIAtlas Fiber Analyzer extension)
Mesh Compression (cli, bundled in CBC 3D I2MConversion extension)
Mesh To Label Map (cli, bundled in Mesh To Label Map extension)
Metafile Importer (loadable, bundled in Sequences extension)
Model Maker (cli, built-in)
Model Registration (scripted, bundled in Slicer IGT extension)
Models (loadable, built-in)
Model To Label Map (cli, built-in)
Multiply Scalar Volumes (cli, built-in)
Multi Volume Explorer (loadable, built-in)
Multi Volume Importer (scripted, built-in)
N4ITKBias Field Correction (cli, built-in)
Needle Finder (scripted, bundled in Needle Finder extension)
Non Growing (cli, bundled in CMFreg extension)
Open IGTLink IF (loadable, built-in)
Open IGTLink Remote (loadable, bundled in Slicer IGT extension)
Orient Scalar Volume (cli, built-in)
Path Explorer (loadable, bundled in Slicer IGT extension)
PBNRR (cli, bundled in PBNRR extension)
Perform Metric Test (cli, built-in)
Perk Evaluator (loadable, bundled in Perk Tutor extension)
PETIndi C (scripted, bundled in PET-Indi C extension)
PETStandard Uptake Value Computation (cli, built-in)
PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
PETTumor Segmentation (loadable, bundled in PETTumor Segmentation extension)
Pivot Calibration (loadable, bundled in Slicer IGT extension)
Pk Modeling (cli, bundled in Pk Modeling extension)
Planar Image (loadable, bundled in Slicer RT extension)
plastimatch slicer bspline (cli, bundled in Slicer RT extension)
plastimatch slicer landwarp (cli, bundled in Slicer RT extension)
Plastimatch Py (loadable, bundled in Slicer RT extension)
Plm Register (scripted, bundled in Slicer RT extension)
Plus Remote (scripted, bundled in Slicer IGT extension)
Probe Volume With Model (cli, built-in)
Python Metrics Calculator (scripted, bundled in Perk Tutor extension)
Quad Edge Surface Mesher (cli, bundled in Slicer Prostate extension)
Quantitative Indices CLI (cli, bundled in PET-Indi C extension)
Quantitative Indices Tool (scripted, bundled in PET-Indi C extension)
Reformat (loadable, built-in)
Reporting (loadable, bundled in Reporting extension)
Resample DTIVolume (cli, built-in)
Resample Scalar Vector DWIVolume (cli, built-in)
Robust Statistics Segmenter (cli, built-in)
Sample Data (scripted, built-in)
Scar Visualization (scripted, bundled in Cardiac MRI Toolkit extension)
Scene Views (loadable, built-in)
Segmentation Smoothing (cli, bundled in Slicer Prostate extension)
Segment CAD (scripted, bundled in Open CAD extension)
Sequence Browser (loadable, bundled in Sequences extension)
Sequences (loadable, bundled in Sequences extension)
Simple Filters (scripted, built-in)
Simple Region Growing Segmentation (cli, built-in)
Skull Stripper (cli, bundled in Skull Stripper extension)
Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)
Sobolev Segmenter (cli, bundled in Sobolev Segmenter extension)
Spacing Aware Curvature Diffusion (cli, bundled in IASEM extension)
Spinal Curvature Measurement (scripted, bundled in Scoliosis extension)
Subject Hierarchy (loadable, built-in)
Subtract Scalar Volumes (cli, built-in)
Surface Registration (scripted, bundled in CMFreg extension)
Surface Toolbox (scripted, built-in)
SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
Swiss Skull Stripper (cli, bundled in Swiss Skull Stripper extension)
T1 Mapping (scripted, bundled in T1 Mapping extension)
TCIABrowser (scripted, bundled in TCIABrowser extension)
Thingiverse Browser (scripted, bundled in Thingiverse Browser extension)
Threshold Scalar Volume (cli, built-in)
Tracker Stabilizer (loadable, bundled in Tracker Stabilizer extension)
Tractography Display (loadable, built-in)
Tractography Interactive Seeding (loadable, built-in)
Tractography Label Map Seeding (cli, built-in)
Transform Fusion (loadable, bundled in Slicer IGT extension)
Transform Recorder (loadable, bundled in Perk Tutor extension)
Transforms (loadable, built-in)
Ultrasound Snapshots (loadable, bundled in Slicer IGT extension)
Units (loadable, built-in)
VBRAINSDemon Warp (cli, built-in)
Vector To Scalar Volume (scripted, built-in)
Vesselness Filtering (scripted, bundled in VMTK extension)
Vff File Reader (loadable, bundled in Slicer RT extension)
View Controllers (loadable, built-in)
Volume Clip With Model (scripted, bundled in Volume Clip extension)
Volume Rendering (loadable, built-in)
Volume Reslice Driver (loadable, bundled in Slicer IGT extension)
Volumes (loadable, built-in)
Voting Binary Hole Filling Image Filter (cli, built-in)
Wasp (scripted, bundled in Wasp extension)
Watchdog (loadable, bundled in Slicer IGT extension)
Welcome (loadable, built-in)
Window Level Effect (scripted, bundled in Window Level Effect extension)
Workflow Segmentation (loadable, bundled in Perk Tutor extension)
Xnat Slicer (scripted, bundled in XNATSlicer extension)

@@ Line 4: / Line 4: @@
 categories:
 * [[#Modules_by_category_BRAINS|BRAINS]]
-** [[#Modules_by_category_LabelStatistics|Label Statistics]]
+** [[#Modules_by_category_BRAINS_LabelStatistics|Label Statistics]]
 * [[#Modules_by_category_Cardiac_MRI_Toolkit|Cardiac MRI Toolkit]]
 * [[#Modules_by_category_CMF_Registration|CMF Registration]]
-** [[#Modules_by_category_Voxelbase_Registration|Voxelbase Registration]]
+** [[#Modules_by_category_CMF_Registration_Voxelbase_Registration|Voxelbase Registration]]
 * [[#Modules_by_category_Converters|Converters]]
 * [[#Modules_by_category_Developer_Tools|Developer Tools]]
-** [[#Modules_by_category_DICOM_Plugins|DICOM Plugins]]
+** [[#Modules_by_category_Developer_Tools_DICOM_Plugins|DICOM Plugins]]
-** [[#Modules_by_category_Editor_Extensions|Editor Extensions]]
+** [[#Modules_by_category_Developer_Tools_Editor_Extensions|Editor Extensions]]
-** [[#Modules_by_category_Matlab|Matlab]]
+** [[#Modules_by_category_Developer_Tools_Matlab|Matlab]]
 * [[#Modules_by_category_Diffusion|Diffusion]]
-** [[#Modules_by_category_Diffusion_Data_Conversion|Diffusion Data Conversion]]
+** [[#Modules_by_category_Diffusion_Diffusion_Data_Conversion|Diffusion Data Conversion]]
-** [[#Modules_by_category_Diffusion_Tensor_Images|Diffusion Tensor Images]]
+** [[#Modules_by_category_Diffusion_Diffusion_Tensor_Images|Diffusion Tensor Images]]
-** [[#Modules_by_category_Diffusion_Weighted_Images|Diffusion Weighted Images]]
+** [[#Modules_by_category_Diffusion_Diffusion_Weighted_Images|Diffusion Weighted Images]]
-** [[#Modules_by_category_FiberAnalysis|Fiber Analysis]]
+** [[#Modules_by_category_Diffusion_FiberAnalysis|Fiber Analysis]]
-** [[#Modules_by_category_Tractography|Tractography]]
+** [[#Modules_by_category_Diffusion_Tractography|Tractography]]
 * [[#Modules_by_category_Editor_Effects|Editor Effects]]
 * [[#Modules_by_category_EditorEffect|Editor Effect]]
@@ Line 25: / Line 25: @@
 * [[#Modules_by_category_Exporter|Exporter]]
 * [[#Modules_by_category_Filtering|Filtering]]
-** [[#Modules_by_category_Arithmetic|Arithmetic]]
+** [[#Modules_by_category_Filtering_Arithmetic|Arithmetic]]
-** [[#Modules_by_category_Denoising|Denoising]]
+** [[#Modules_by_category_Filtering_Denoising|Denoising]]
-** [[#Modules_by_category_Morphology|Morphology]]
+** [[#Modules_by_category_Filtering_Morphology|Morphology]]
 * [[#Modules_by_category_IGT|IGT]]
 * [[#Modules_by_category_Informatics|Informatics]]
 * [[#Modules_by_category_Legacy|Legacy]]
-** [[#Modules_by_category_Converters|Converters]]
+** [[#Modules_by_category_Legacy_Converters|Converters]]
-** [[#Modules_by_category_Diffusion|Diffusion]]
+** [[#Modules_by_category_Legacy_Diffusion|Diffusion]]
-*** [[#Modules_by_category_Denoising|Denoising]]
+*** [[#Modules_by_category_Diffusion_Denoising|Denoising]]
-*** [[#Modules_by_category_Diffusion_Data_Conversion|Diffusion Data Conversion]]
+*** [[#Modules_by_category_Diffusion_Diffusion_Data_Conversion|Diffusion Data Conversion]]
-** [[#Modules_by_category_Filtering|Filtering]]
+** [[#Modules_by_category_Legacy_Filtering|Filtering]]
-** [[#Modules_by_category_Registration|Registration]]
+** [[#Modules_by_category_Legacy_Registration|Registration]]
-** [[#Modules_by_category_Work_in_Progress|Work in Progress]]
+** [[#Modules_by_category_Legacy_Work_in_Progress|Work in Progress]]
-*** [[#Modules_by_category_Diffusion_Tensor|Diffusion Tensor]]
+*** [[#Modules_by_category_Work_in_Progress_Diffusion_Tensor|Diffusion Tensor]]
-**** [[#Modules_by_category_Test|Test]]
+**** [[#Modules_by_category_Diffusion_Tensor_Test|Test]]
 * [[#Modules_by_category_Mesh_Generation|Mesh Generation]]
 * [[#Modules_by_category_MeshGeneration|Mesh Generation]]
@@ Line 46: / Line 46: @@
 * [[#Modules_by_category_Perk_Tutor|Perk Tutor]]
 * [[#Modules_by_category_Plastimatch|Plastimatch]]
-** [[#Modules_by_category_Registration|Registration]]
+** [[#Modules_by_category_Plastimatch_Registration|Registration]]
-** [[#Modules_by_category_Utilities|Utilities]]
+** [[#Modules_by_category_Plastimatch_Utilities|Utilities]]
 * [[#Modules_by_category_Quantification|Quantification]]
-** [[#Modules_by_category_ChangeQuantification|Change Quantification]]
+** [[#Modules_by_category_Quantification_ChangeQuantification|Change Quantification]]
 * [[#Modules_by_category_Radiotherapy|Radiotherapy]]
 * [[#Modules_by_category_Registration|Registration]]
-** [[#Modules_by_category_Label_Registration|Label Registration]]
+** [[#Modules_by_category_Registration_Label_Registration|Label Registration]]
-** [[#Modules_by_category_Specialized|Specialized]]
+** [[#Modules_by_category_Registration_Specialized|Specialized]]
 * [[#Modules_by_category_Segmentation|Segmentation]]
-** [[#Modules_by_category_Specialized|Specialized]]
+** [[#Modules_by_category_Segmentation_Specialized|Specialized]]
 * [[#Modules_by_category_Sequences|Sequences]]
 * [[#Modules_by_category_Shape_Analysis|Shape Analysis]]
@@ Line 61: / Line 61: @@
 * [[#Modules_by_category_Surface_Models|Surface Models]]
 * [[#Modules_by_category_Testing|Testing]]
-** [[#Modules_by_category_IGT_Tests|IGT Tests]]
+** [[#Modules_by_category_Testing_IGT_Tests|IGT Tests]]
-** [[#Modules_by_category_TestCases|Test Cases]]
+** [[#Modules_by_category_Testing_TestCases|Test Cases]]
 * [[#Modules_by_category_Unspecified|Unspecified]]
 * [[#Modules_by_category_Utilities|Utilities]]
-** [[#Modules_by_category_BRAINS|BRAINS]]
+** [[#Modules_by_category_Utilities_BRAINS|BRAINS]]
 * [[#Modules_by_category_Vascular_Modeling_Toolkit|Vascular Modeling Toolkit]]
 * [[#Modules_by_category_Wizards|Wizards]]
 * [[#Modules_by_category_Work_in_Progress|Work in Progress]]
-** [[#Modules_by_category_Converters|Converters]]
+** [[#Modules_by_category_Work_in_Progress_Converters|Converters]]
-** [[#Modules_by_category_Informatics|Informatics]]
+** [[#Modules_by_category_Work_in_Progress_Informatics|Informatics]]
-*** [[#Modules_by_category_TestCases|Test Cases]]
+*** [[#Modules_by_category_Informatics_TestCases|Test Cases]]
 * [[#Modules_by_category_XNATSlicer|XNATSlicer]]
+<span id='Modules_by_category_BRAINS'></span>
 == BRAINS ==
+<span id='Modules_by_category_BRAINS_LabelStatistics'></span>
 === LabelStatistics ===
 * BRAINSLabel Stats    <small>(cli, built-in)</small>
+<span id='Modules_by_category_Cardiac_MRI_Toolkit'></span>
 == Cardiac MRI Toolkit ==
 * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Connected Threshold Filter]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
@@ Line 90: / Line 93: @@
 * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration BRAINSFit]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit LASegmentation Graph Cuts]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+<span id='Modules_by_category_CMF_Registration'></span>
 == CMF Registration ==
 * [[Documentation/Nightly/Extensions/CMFreg|Apply Matrix]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
@@ Line 97: / Line 101: @@
 * [[Documentation/Nightly/Modules/LabelAddition|Label Addition]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
 * [[Documentation/Nightly/Modules/Downsize|Downsize]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
+<span id='Modules_by_category_CMF_Registration_Voxelbase_Registration'></span>
 === Voxelbase Registration ===
 * [[Documentation/Nightly/Modules/MaskCreation|Mask Creation]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
 * [[Documentation/Nightly/Modules/NonGrowing|Non Growing]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
 * [[Documentation/Nightly/Modules/Growing|Growing]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
+<span id='Modules_by_category_Converters'></span>
 == Converters ==
 * [[Documentation/Nightly/Modules/VectorToScalarVolume|Vector To Scalar Volume]]    <small>(scripted, built-in)</small>
@@ Line 107: / Line 113: @@
 * [[Documentation/Nightly/Modules/QuadEdgeSurfaceMesher|Quad Edge Surface Mesher]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerProstate|Slicer Prostate]] extension)</small>
 * [[Documentation/Nightly/Modules/CreateDICOMSeries|Create DICOMSeries]]    <small>(cli, built-in)</small>
+<span id='Modules_by_category_Developer_Tools'></span>
 == Developer Tools ==
 * [[Documentation/Nightly/Modules/EventBroker|Event Broker]]
@@ Line 116: / Line 123: @@
 * [[Documentation/Nightly/Modules/ExtensionWizard|Extension Wizard]]    <small>(scripted, built-in)</small>
 * [[Documentation/Nightly/Modules/ImageMaker|Image Maker]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/ImageMaker|Image Maker]] extension)</small>
+<span id='Modules_by_category_Developer_Tools_DICOM_Plugins'></span>
 === DICOM Plugins ===
 * DICOMLongitudinal PETCTPlugin
@@ Line 127: / Line 135: @@
 * DICOMScalar Volume Plugin
 * DICOMSlicer Data Bundle Plugin
+<span id='Modules_by_category_Developer_Tools_Editor_Extensions'></span>
 === Editor Extensions ===
 * [[Documentation/Nightly/Extensions/IASEM|Binary Watershed Effect]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small>
-* [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect]    <small>(scripted, bundled in [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect] extension)</small>
+* [[Documentation/4.3/Modules/FastGrowCut|Fast Grow Cut Effect]]    <small>(scripted, bundled in [[Documentation/4.3/Modules/FastGrowCut|Fast Grow Cut Effect]] extension)</small>
-* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice Effect]    <small>(scripted, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
+* [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|Carrera Slice Effect]]    <small>(scripted, bundled in [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|Carrera Slice]] extension)</small>
 * [[Documentation/Nightly/Extensions/IASEM|Double Threshold Effect]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small>
 * [[Documentation/Nightly/Modules/PETTumorSegmentationEffect|PETTumor Segmentation Effect]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PETTumorSegmentation|PETTumor Segmentation]] extension)</small>
+<span id='Modules_by_category_Developer_Tools_Matlab'></span>
 === Matlab ===
 * [[Documentation/Nightly/Modules/MatlabCommander|Matlab Commander]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/MatlabBridge|Matlab Bridge]] extension)</small>
 * [[Documentation/Nightly/Modules/MatlabModuleGenerator|Matlab Module Generator]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/MatlabBridge|Matlab Bridge]] extension)</small>
+<span id='Modules_by_category_Diffusion'></span>
 == Diffusion ==
 * [[Documentation/Nightly/Modules/TractographyDisplay|Tractography Display]]    <small>(loadable, built-in)</small>
 * DICOM2Full Brain Tractography    <small>(scripted, built-in)</small>
+<span id='Modules_by_category_Diffusion_Diffusion_Data_Conversion'></span>
 === Diffusion Data Conversion ===
 * DWIConvert    <small>(cli, built-in)</small>
+<span id='Modules_by_category_Diffusion_Diffusion_Tensor_Images'></span>
 === Diffusion Tensor Images ===
 * [[Documentation/Nightly/Modules/ResampleDTIVolume|Resample DTIVolume]]    <small>(cli, built-in)</small>
@@ Line 146: / Line 159: @@
 * [[Documentation/Nightly/Modules/TractographyLabelMapSeeding|Tractography Label Map Seeding]]    <small>(cli, built-in)</small>
 * Tractography Interactive Seeding    <small>(loadable, built-in)</small>
+<span id='Modules_by_category_Diffusion_Diffusion_Weighted_Images'></span>
 === Diffusion Weighted Images ===
 * [[Documentation/Nightly/Modules/DWIRicianLMMSEFilter|DWIRician LMMSEFilter]]    <small>(cli, built-in)</small>
@@ Line 154: / Line 168: @@
 * [[Documentation/Nightly/Modules/FinslerTractography|Finsler Tractography]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/FinslerTractography|Finsler Tractography]] extension)</small>
 * [[Documentation/Nightly/Modules/DiffusionWeightedVolumeMasking|Diffusion Weighted Volume Masking]]    <small>(cli, built-in)</small>
+<span id='Modules_by_category_Diffusion_FiberAnalysis'></span>
 === FiberAnalysis ===
 * [[Documentation/Nightly/Extensions/DTIAtlasFiberAnalyzer|Fiber Compare]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small>
@@ Line 159: / Line 174: @@
 * [[Documentation/Nightly/Extensions/DTIAtlasFiberAnalyzer|Merge Stat With Fiber]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small>
 * [[Documentation/Nightly/Extensions/DTIAtlasFiberAnalyzer|dtitractstat]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small>
+<span id='Modules_by_category_Diffusion_Tractography'></span>
 === Tractography ===
 * [[Documentation/Nightly/Modules/FiberBundleToLabelMap|Fiber Bundle To Label Map]]    <small>(scripted, built-in)</small>
 * Fiber Tract Measurements    <small>(cli, built-in)</small>
 * Fiber Bundle Label Select    <small>(cli, built-in)</small>
+<span id='Modules_by_category_Editor_Effects'></span>
 == Editor Effects ==
 * [[Documentation/Nightly/Extensions/WindowLevelEffect|Window Level Effect]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/WindowLevelEffect|Window Level Effect]] extension)</small>
+<span id='Modules_by_category_EditorEffect'></span>
 == EditorEffect ==
 * [[Documentation/Nightly/Extensions/PETTumorSegmentation|PETTumor Segmentation]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/PETTumorSegmentation|PETTumor Segmentation]] extension)</small>
+<span id='Modules_by_category_Endoscopy'></span>
 == Endoscopy ==
 * [[Documentation/Nightly/Modules/Endoscopy|Endoscopy]]    <small>(scripted, built-in)</small>
+<span id='Modules_by_category_Examples'></span>
 == Examples ==
-* [[Documentation/Nightly/Modules/FastGrowCut|Fast Grow Cut]]    <small>(loadable, bundled in [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect] extension)</small>
+* [[Documentation/Nightly/Modules/FastGrowCut|Fast Grow Cut]]    <small>(loadable, bundled in [[Documentation/4.3/Modules/FastGrowCut|Fast Grow Cut Effect]] extension)</small>
-* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Fast Grow Cut Segmenter]    <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
+* [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|Fast Grow Cut Segmenter]]    <small>(loadable, bundled in [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|Carrera Slice]] extension)</small>
-* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]    <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
+* [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|Carrera Slice]]    <small>(loadable, bundled in [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|Carrera Slice]] extension)</small>
+<span id='Modules_by_category_Exporter'></span>
 == Exporter ==
 * [[Documentation/Nightly/Modules/SlicerToKiwiExporter|Slicer To Kiwi Exporter]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerToKiwiExporter|Slicer To Kiwi Exporter]] extension)</small>
+<span id='Modules_by_category_Filtering'></span>
 == Filtering ==
 * [[Documentation/Nightly/Modules/ExtractSkeleton|Extract Skeleton]]    <small>(cli, built-in)</small>
@@ Line 185: / Line 207: @@
 * [[Documentation/Nightly/Modules/HistogramMatching|Histogram Matching]]    <small>(cli, built-in)</small>
 * [[Documentation/Nightly/Modules/CheckerBoardFilter|Checker Board Filter]]    <small>(cli, built-in)</small>
+<span id='Modules_by_category_Filtering_Arithmetic'></span>
 === Arithmetic ===
 * [[Documentation/Nightly/Modules/MultiplyScalarVolumes|Multiply Scalar Volumes]]    <small>(cli, built-in)</small>
@@ Line 191: / Line 214: @@
 * [[Documentation/Nightly/Modules/SubtractScalarVolumes|Subtract Scalar Volumes]]    <small>(cli, built-in)</small>
 * [[Documentation/Nightly/Modules/MaskScalarVolume|Mask Scalar Volume]]    <small>(cli, built-in)</small>
+<span id='Modules_by_category_Filtering_Denoising'></span>
 === Denoising ===
 * [[Documentation/Nightly/Modules/GradientAnisotropicDiffusion|Gradient Anisotropic Diffusion]]    <small>(cli, built-in)</small>
@@ Line 196: / Line 220: @@
 * [[Documentation/Nightly/Modules/GaussianBlurImageFilter|Gaussian Blur Image Filter]]    <small>(cli, built-in)</small>
 * [[Documentation/Nightly/Modules/CurvatureAnisotropicDiffusion|Curvature Anisotropic Diffusion]]    <small>(cli, built-in)</small>
+<span id='Modules_by_category_Filtering_Morphology'></span>
 === Morphology ===
 * [[Documentation/Nightly/Modules/GrayscaleFillHoleImageFilter|Grayscale Fill Hole Image Filter]]    <small>(cli, built-in)</small>
 * [[Documentation/Nightly/Modules/GrayscaleGrindPeakImageFilter|Grayscale Grind Peak Image Filter]]    <small>(cli, built-in)</small>
+<span id='Modules_by_category_IGT'></span>
 == IGT ==
 * [[Documentation/Nightly/Extensions/LightWeightRobotIGT|Light Weight Robot IGT]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/LightWeightRobotIGT|Light Weight Robot IGT]] extension)</small>
@@ Line 222: / Line 248: @@
 * [[Documentation/Nightly/Extensions/SlicerIGT|Pivot Calibration]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 * [[Documentation/Nightly/Modules/CornerAnnotation|Corner Annotation]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/CornerAnnotation|Corner Annotation]] extension)</small>
+<span id='Modules_by_category_Informatics'></span>
 == Informatics ==
 * [[Documentation/Nightly/Modules/Annotations|Annotations]]    <small>(loadable, built-in)</small>
@@ Line 233: / Line 260: @@
 * [[Documentation/Nightly/Modules/SubjectHierarchy|Subject Hierarchy]]    <small>(loadable, built-in)</small>
 * [[Documentation/Nightly/Extensions/TCIABrowser|TCIABrowser]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/TCIABrowser|TCIABrowser]] extension)</small>
+<span id='Modules_by_category_Legacy'></span>
 == Legacy ==
+<span id='Modules_by_category_Legacy_Converters'></span>
 === Converters ===
 * [[Documentation/Nightly/Modules/BSplineToDeformationField|BSpline To Deformation Field]]    <small>(cli, built-in)</small>
+<span id='Modules_by_category_Legacy_Diffusion'></span>
 === Diffusion ===
+<span id='Modules_by_category_Diffusion_Denoising'></span>
 ==== Denoising ====
 * [[Documentation/Nightly/Modules/DWIUnbiasedNonLocalMeansFilter|DWIUnbiased Non Local Means Filter]]    <small>(cli, built-in)</small>
+<span id='Modules_by_category_Diffusion_Diffusion_Data_Conversion'></span>
 ==== Diffusion Data Conversion ====
 * DTIimport    <small>(cli, built-in)</small>
 * DTIexport    <small>(cli, built-in)</small>
+<span id='Modules_by_category_Legacy_Filtering'></span>
 === Filtering ===
 * [[Documentation/Nightly/Modules/OtsuThresholdImageFilter|Otsu Threshold Image Filter]]    <small>(cli, built-in)</small>
 * [[Documentation/Nightly/Modules/ResampleScalarVolume|Resample Scalar Volume]]    <small>(cli, built-in)</small>
+<span id='Modules_by_category_Legacy_Registration'></span>
 === Registration ===
 * Test Grid Transform Registration    <small>(cli, built-in)</small>
 * [[Documentation/Nightly/Modules/ExpertAutomatedRegistration|Expert Automated Registration]]    <small>(cli, built-in)</small>
+<span id='Modules_by_category_Legacy_Work_in_Progress'></span>
 === Work in Progress ===
+<span id='Modules_by_category_Work_in_Progress_Diffusion_Tensor'></span>
 ==== Diffusion Tensor ====
+<span id='Modules_by_category_Diffusion_Tensor_Test'></span>
 ===== Test =====
 * Diffusion Tensor Test    <small>(cli, built-in)</small>
+<span id='Modules_by_category_Mesh_Generation'></span>
 == Mesh Generation ==
 * [[Documentation/Nightly/Extensions/CleaverExtension|Cleaver CLI]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CleaverExtension|Cleaver Extension]] extension)</small>
+<span id='Modules_by_category_MeshGeneration'></span>
 == MeshGeneration ==
 * [[Documentation/Nightly/Modules/BodyCentricCubicMesh|Body Centric Cubic Mesh]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]] extension)</small>
 * [[Documentation/Nightly/Modules/MeshCompression|Mesh Compression]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]] extension)</small>
+<span id='Modules_by_category_Microscopy'></span>
 == Microscopy ==
 * [[Documentation/Nightly/Extensions/IASEM|Bin Shrink]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small>
@@ Line 263: / Line 303: @@
 * [[Documentation/Nightly/Extensions/IASEM|IASEMImport]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small>
 * [[Documentation/Nightly/Extensions/IASEM|IASEMImport Series]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small>
+<span id='Modules_by_category_MultiVolume_Support'></span>
 == MultiVolume Support ==
 * [[Documentation/Nightly/Modules/MultiVolumeExplorer|Multi Volume Explorer]]    <small>(loadable, built-in)</small>
 * [[Documentation/Nightly/Modules/MultiVolumeImporter|Multi Volume Importer]]    <small>(scripted, built-in)</small>
+<span id='Modules_by_category_Perk_Tutor'></span>
 == Perk Tutor ==
 * [[Documentation/Nightly/Extensions/PerkTutor|Python Metrics Calculator]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PerkTutor|Perk Tutor]] extension)</small>
@@ Line 271: / Line 313: @@
 * [[Documentation/Nightly/Modules/TransformRecorder|Transform Recorder]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/PerkTutor|Perk Tutor]] extension)</small>
 * [[Documentation/Nightly/Modules/PerkEvaluator|Perk Evaluator]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/PerkTutor|Perk Tutor]] extension)</small>
+<span id='Modules_by_category_Plastimatch'></span>
 == Plastimatch ==
 * [[Documentation/Nightly/Modules/DicomSroExport|Dicom Sro Export]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
 * [[Documentation/Nightly/Extensions/SlicerRT|Plm Register]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
+<span id='Modules_by_category_Plastimatch_Registration'></span>
 === Registration ===
 * [[Documentation/Nightly/Extensions/SlicerRT|plastimatch slicer bspline]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
 * [[Documentation/Nightly/Extensions/SlicerRT|plastimatch slicer landwarp]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
+<span id='Modules_by_category_Plastimatch_Utilities'></span>
 === Utilities ===
 * [[Documentation/Nightly/Extensions/SlicerRT|Plastimatch Py]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
+<span id='Modules_by_category_Quantification'></span>
 == Quantification ==
 * [[Documentation/Nightly/Modules/QuantitativeIndicesCLI|Quantitative Indices CLI]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/PET-IndiC|PET-Indi C]] extension)</small>
 * [[Documentation/Nightly/Modules/PETStandardUptakeValueComputation|PETStandard Uptake Value Computation]]    <small>(cli, built-in)</small>
-* [[Documentation/Nightly/Modules/SUVFactorCalculator|SUVFactor Calculator]]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] extension)</small>
+* [[Documentation/Nightly/Modules/SUVFactorCalculator|SUVFactor Calculator]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/PETDICOM|PETDICOMExtension]] extension)</small>
 * [[Documentation/Nightly/Modules/SpinalCurvatureMeasurement|Spinal Curvature Measurement]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/Scoliosis|Scoliosis]] extension)</small>
 * [[Documentation/Nightly/Extensions/PET-IndiC|PETIndi C]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PET-IndiC|PET-Indi C]] extension)</small>
@@ Line 294: / Line 340: @@
 * [[Documentation/Nightly/Modules/DataProbe|Data Probe]]    <small>(scripted, built-in)</small>
 * [[Documentation/Nightly/Modules/QuantitativeIndicesTool|Quantitative Indices Tool]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PET-IndiC|PET-Indi C]] extension)</small>
+<span id='Modules_by_category_Quantification_ChangeQuantification'></span>
 === ChangeQuantification ===
 * [[Documentation/Nightly/Modules/IntensityDifferenceMetric|Intensity Difference Metric]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/ChangeTracker|Change Tracker]] extension)</small>
+<span id='Modules_by_category_Radiotherapy'></span>
 == Radiotherapy ==
 * [[Documentation/Nightly/Extensions/SlicerRT|Beams]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
@@ Line 303: / Line 351: @@
 * [[Documentation/Nightly/Modules/DicomSroImport|Dicom Sro Import]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
 * [[Documentation/Nightly/Extensions/SlicerRT|Planar Image]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
+<span id='Modules_by_category_Registration'></span>
 == Registration ==
 * [[Documentation/Nightly/Modules/BRAINSResample|BRAINSResample]]    <small>(cli, built-in)</small>
@@ Line 310: / Line 359: @@
 * [[Documentation/Nightly/Modules/BRAINSFit|BRAINSFit]]    <small>(cli, built-in)</small>
 * [[Documentation/Nightly/Extensions/PBNRR|PBNRR]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/PBNRR|PBNRR]] extension)</small>
+<span id='Modules_by_category_Registration_Label_Registration'></span>
 === Label Registration ===
 * [[Documentation/Nightly/Modules/DistanceMapBasedRegistration|Distance Map Based Registration]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerProstate|Slicer Prostate]] extension)</small>
+<span id='Modules_by_category_Registration_Specialized'></span>
 === Specialized ===
 * [[Documentation/Nightly/Modules/ACPCTransform|ACPCTransform]]    <small>(cli, built-in)</small>
@@ Line 318: / Line 369: @@
 * [[Documentation/Nightly/Modules/BRAINSDemonWarp|BRAINSDemon Warp]]    <small>(cli, built-in)</small>
 * [[Documentation/Nightly/Modules/Reformat|Reformat]]    <small>(loadable, built-in)</small>
+<span id='Modules_by_category_Segmentation'></span>
 == Segmentation ==
-* [[Documentation/Nightly/Modules/AirwaySegmentation|Airway Segmentation]]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation] extension)</small>
+* [[Documentation/Nightly/Modules/AirwaySegmentation|Airway Segmentation]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/AirwaySegmentation|Airway Segmentation]] extension)</small>
 * [[Documentation/Nightly/Modules/Editor|Editor]]    <small>(scripted, built-in)</small>
 * EMSegment Quick    <small>(loadable, built-in)</small>
@@ Line 326: / Line 378: @@
 * [[Documentation/Nightly/Modules/EMSegment|EMSegment]]    <small>(loadable, built-in)</small>
 * [[Documentation/Nightly/Modules/SegmentCAD|Segment CAD]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/OpenCAD|Open CAD]] extension)</small>
-* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation CLI]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation] extension)</small>
+* [[Documentation/Nightly/Extensions/AirwaySegmentation|Airway Segmentation CLI]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/AirwaySegmentation|Airway Segmentation]] extension)</small>
 * [[Documentation/Nightly/Modules/LAScarSegmenter|LAScar Segmenter]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/LAScarSegmenter|LAScar Segmenter]] extension)</small>
 * [[Documentation/Nightly/Modules/SobolevSegmenter|Sobolev Segmenter]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SobolevSegmenter|Sobolev Segmenter]] extension)</small>
@@ Line 333: / Line 385: @@
 * [[Documentation/Nightly/Modules/SwissSkullStripper|Swiss Skull Stripper]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SwissSkullStripper|Swiss Skull Stripper]] extension)</small>
 * [[Documentation/Nightly/Extensions/IntensitySegmenter|Intensity Segmenter]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/IntensitySegmenter|Intensity Segmenter]] extension)</small>
+<span id='Modules_by_category_Segmentation_Specialized'></span>
 === Specialized ===
 * EMSegment Command Line    <small>(cli, built-in)</small>
 * [[Documentation/Nightly/Modules/RobustStatisticsSegmenter|Robust Statistics Segmenter]]    <small>(cli, built-in)</small>
 * BRAINSROIAuto    <small>(cli, built-in)</small>
+<span id='Modules_by_category_Sequences'></span>
 == Sequences ==
 * [[Documentation/Nightly/Extensions/Sequences|Metafile Importer]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/Sequences|Sequences]] extension)</small>
 * [[Documentation/Nightly/Extensions/Sequences|Sequence Browser]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/Sequences|Sequences]] extension)</small>
 * [[Documentation/Nightly/Extensions/Sequences|Sequences]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/Sequences|Sequences]] extension)</small>
+<span id='Modules_by_category_Shape_Analysis'></span>
 == Shape Analysis ==
 * [[Documentation/Nightly/Extensions/MeshToLabelMap|Mesh To Label Map]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/MeshToLabelMap|Mesh To Label Map]] extension)</small>
+<span id='Modules_by_category_Slicelets'></span>
 == Slicelets ==
-* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis Algo]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
+* [[Documentation/Nightly/Modules/GelDosimetry|Gel Dosimetry Analysis Algo]]    <small>(loadable, bundled in [[Documentation/Nightly/Modules/GelDosimetry|Gel Dosimetry Analysis]] extension)</small>
+<span id='Modules_by_category_Surface_Models'></span>
 == Surface Models ==
 * [[Documentation/Nightly/Modules/ModelToLabelMap|Model To Label Map]]    <small>(cli, built-in)</small>
@@ Line 353: / Line 410: @@
 * [[Documentation/Nightly/Modules/LabelMapSmoothing|Label Map Smoothing]]    <small>(cli, built-in)</small>
 * [[Documentation/Nightly/Modules/ModelMaker|Model Maker]]    <small>(cli, built-in)</small>
+<span id='Modules_by_category_Testing'></span>
 == Testing ==
 * Slicer MRBTest
@@ Line 361: / Line 419: @@
 * [[Documentation/Nightly/Extensions/Scoliosis|Scoliosis Monitoring]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/Scoliosis|Scoliosis]] extension)</small>
 * Performance Tests
+<span id='Modules_by_category_Testing_IGT_Tests'></span>
 === IGT Tests ===
 * Watchdog Self Test
 * Breach Warning Self Test
+<span id='Modules_by_category_Testing_TestCases'></span>
 === TestCases ===
 * Slice Link Logic    <small>(scripted, built-in)</small>
@@ Line 392: / Line 452: @@
 * Crop Volume Self Test
 * label Toggle Bug2049
+<span id='Modules_by_category_Unspecified'></span>
 == Unspecified ==
 * BRAINSDWICleanup    <small>(cli, built-in)</small>
+<span id='Modules_by_category_Utilities'></span>
 == Utilities ==
 * [[Documentation/Nightly/Modules/ThingiverseBrowser|Thingiverse Browser]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/ThingiverseBrowser|Thingiverse Browser]] extension)</small>
@@ Line 399: / Line 461: @@
 * EMSegment Transform To New Format    <small>(cli, built-in)</small>
 * [[Documentation/Nightly/Modules/DataStore|Data Store]]    <small>(loadable, built-in)</small>
+<span id='Modules_by_category_Utilities_BRAINS'></span>
 === BRAINS ===
 * BRAINSTransform Convert    <small>(cli, built-in)</small>
+<span id='Modules_by_category_Vascular_Modeling_Toolkit'></span>
 == Vascular Modeling Toolkit ==
 * [http://slicer.vmtk.org/ Vesselness Filtering]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 * [http://slicer.vmtk.org/ Centerline Computation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 * [http://slicer.vmtk.org/ Level Set Segmentation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
+<span id='Modules_by_category_Wizards'></span>
 == Wizards ==
 * [[Documentation/Nightly/Modules/CompareVolumes|Compare Volumes]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
 * [[Documentation/Nightly/Modules/ChangeTracker|Change Tracker]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/ChangeTracker|Change Tracker]] extension)</small>
+<span id='Modules_by_category_Work_in_Progress'></span>
 == Work in Progress ==
 * [[Documentation/Nightly/Extensions/LongitudinalPETCT|Longitudinal PETCT]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/LongitudinalPETCT|Longitudinal PETCT]] extension)</small>
+<span id='Modules_by_category_Work_in_Progress_Converters'></span>
 === Converters ===
 * [[Documentation/Nightly/Extensions/Reporting|Label To DICOMSEGConverter]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/Reporting|Reporting]] extension)</small>
+<span id='Modules_by_category_Work_in_Progress_Informatics'></span>
 === Informatics ===
 * [[Documentation/Nightly/Extensions/Reporting|Reporting]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/Reporting|Reporting]] extension)</small>
+<span id='Modules_by_category_Informatics_TestCases'></span>
 ==== TestCases ====
 * Reporting Self Test
 * Label To DICOMSEGConverter Self Test
+<span id='Modules_by_category_XNATSlicer'></span>
 == XNATSlicer ==
 * [[Documentation/Nightly/Extensions/XNATSlicer|Xnat Slicer]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/XNATSlicer|XNATSlicer]] extension)</small>
-= Extensions by category =
+= Modules by name =
-categories:
+modules:
-* [[#Extensions_by_category_Cardiac|Cardiac]]
+* [[Documentation/Nightly/Modules/ACPCTransform|ACPCTransform]]    <small>(cli, built-in)</small>
-* [[#Extensions_by_category_Cardiac_MRI_toolkit|Cardiac MRI toolkit]]
+* [[Documentation/Nightly/Modules/AddScalarVolumes|Add Scalar Volumes]]    <small>(cli, built-in)</small>
-* [[#Extensions_by_category_Converters|Converters]]
+* [[Documentation/Nightly/Modules/AirwaySegmentation|Airway Segmentation]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/AirwaySegmentation|Airway Segmentation]] extension)</small>
-* [[#Extensions_by_category_Developer_Tools|Developer Tools]]
+* [[Documentation/Nightly/Extensions/AirwaySegmentation|Airway Segmentation CLI]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/AirwaySegmentation|Airway Segmentation]] extension)</small>
-* [[#Extensions_by_category_Diffusion|Diffusion]]
+* [[Documentation/Nightly/Modules/Annotations|Annotations]]    <small>(loadable, built-in)</small>
-* [[#Extensions_by_category_Editor_Effects|Editor Effects]]
+* [[Documentation/Nightly/Extensions/CMFreg|Apply Matrix]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
-* [[#Extensions_by_category_Exporter|Exporter]]
+* [[Documentation/Nightly/Extensions/SlicerRT|Beams]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
-* [[#Extensions_by_category_IGT|IGT]]
+* [[Documentation/Nightly/Extensions/IASEM|Bin Shrink]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small>
-* [[#Extensions_by_category_Informatics|Informatics]]
+* [[Documentation/Nightly/Modules/BodyCentricCubicMesh|Body Centric Cubic Mesh]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]] extension)</small>
-* [[#Extensions_by_category_Mesh_Generation|Mesh Generation]]
+* [[Documentation/Nightly/Modules/BRAINSDemonWarp|BRAINSDemon Warp]]    <small>(cli, built-in)</small>
-* [[#Extensions_by_category_Microscopy|Microscopy]]
+* BRAINSDWICleanup    <small>(cli, built-in)</small>
-* [[#Extensions_by_category_Nuclear_Medicine|Nuclear Medicine]]
+* [[Documentation/Nightly/Modules/BRAINSFit|BRAINSFit]]    <small>(cli, built-in)</small>
-* [[#Extensions_by_category_Quantification|Quantification]]
+* BRAINSLabel Stats    <small>(cli, built-in)</small>
-* [[#Extensions_by_category_Radiotherapy|Radiotherapy]]
+* [[Documentation/Nightly/Modules/BRAINSResample|BRAINSResample]]    <small>(cli, built-in)</small>
-* [[#Extensions_by_category_Registration|Registration]]
+* BRAINSResize    <small>(cli, built-in)</small>
-* [[#Extensions_by_category_Remote|Remote]]
+* BRAINSROIAuto    <small>(cli, built-in)</small>
-* [[#Extensions_by_category_Scoliosis|Scoliosis]]
+* BRAINSStrip Rotation    <small>(cli, built-in)</small>
-* [[#Extensions_by_category_Segmentation|Segmentation]]
+* BRAINSTransform Convert    <small>(cli, built-in)</small>
-* [[#Extensions_by_category_Sequences|Sequences]]
+* [[Documentation/Nightly/Extensions/SlicerIGT|Breach Warning]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
-* [[#Extensions_by_category_Shape_Analysis|Shape Analysis]]
+* [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|Carrera Slice]]    <small>(loadable, bundled in [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|Carrera Slice]] extension)</small>
-* [[#Extensions_by_category_Tractography|Tractography]]
+* [[Documentation/Nightly/Modules/CastScalarVolume|Cast Scalar Volume]]    <small>(cli, built-in)</small>
-* [[#Extensions_by_category_Training|Training]]
+* [http://slicer.vmtk.org/ Centerline Computation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
-* [[#Extensions_by_category_Utilities|Utilities]]
+* [[Documentation/Nightly/Modules/ChangeTracker|Change Tracker]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/ChangeTracker|Change Tracker]] extension)</small>
-* [[#Extensions_by_category_Vascular_Modeling_Toolkit|Vascular Modeling Toolkit]]
+* [[Documentation/Nightly/Modules/CheckerBoardFilter|Checker Board Filter]]    <small>(cli, built-in)</small>
-* [[#Extensions_by_category_Wizards|Wizards]]
+* [[Documentation/Nightly/Extensions/CleaverExtension|Cleaver CLI]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CleaverExtension|Cleaver Extension]] extension)</small>
-== Cardiac ==
+* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Automatic Left Atrial Scar]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
-* [http://brainsia.github.io/CardiacAgatstonMeasures/ Cardiac Agaston Measures]
+* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Axial Dilate]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
-== Cardiac MRI toolkit ==
+* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Boolean REMOVEFilter]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
-* [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit]
+* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Connected Threshold Filter]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
-== Converters ==
+* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Inhomogeneity Correction]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
-* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension]
+* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Isolated Connected Filter]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
-== Developer Tools ==
+* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit LASegmentation Graph Cuts]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
-* [[Documentation/Nightly/Extensions/ImageMaker|Image Maker]]
+* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit PVAntrum Cut]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
-* [[Documentation/Nightly/Extensions/DeveloperToolsForExtensions|Developer Tools For Extensions]]
+* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
-* [[Documentation/Nightly/Extensions/PyDevRemoteDebug|Py Dev Remote Debug]]
+* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration BRAINSFit]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
-* [[Documentation/Nightly/Extensions/MatlabBridge|Matlab Bridge]]
+* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Wizard]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
-== Diffusion ==
+* [[Documentation/Nightly/Modules/CollectFiducials|Collect Fiducials]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
-* [[Documentation/Nightly/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]]
+* [[Documentation/Nightly/Modules/Colors|Colors]]    <small>(loadable, built-in)</small>
-== Editor Effects ==
+* [[Documentation/Nightly/Modules/CompareVolumes|Compare Volumes]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
-* [[Documentation/Nightly/Extensions/WindowLevelEffect|Window Level Effect]]
+* [[Documentation/Nightly/Modules/CornerAnnotation|Corner Annotation]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/CornerAnnotation|Corner Annotation]] extension)</small>
-== Exporter ==
+* [[Documentation/Nightly/Modules/CreateDICOMSeries|Create DICOMSeries]]    <small>(cli, built-in)</small>
-* [[Documentation/Nightly/Extensions/SlicerToKiwiExporter|Slicer To Kiwi Exporter]]
+* [[Documentation/Nightly/Extensions/SlicerIGT|Create Models]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
-== IGT ==
+* [[Documentation/Nightly/Modules/CropVolume|Crop Volume]]    <small>(loadable, built-in)</small>
-* [[Documentation/Nightly/Extensions/LightWeightRobotIGT|Light Weight Robot IGT]]
+* [[Documentation/Nightly/Modules/CurvatureAnisotropicDiffusion|Curvature Anisotropic Diffusion]]    <small>(cli, built-in)</small>
-* [[Documentation/Nightly/Extensions/PortPlacement|Port Placement]]
+* [[Documentation/Nightly/Extensions/CurveMaker|Curve Maker]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/CurveMaker|Curve Maker]] extension)</small>
-* [[Documentation/Nightly/Extensions/GyroGuide|Gyro Guide]]
+* [[Documentation/Nightly/Modules/Data|Data]]    <small>(loadable, built-in)</small>
-* [[Documentation/Nightly/Extensions/CornerAnnotation|Corner Annotation]]
+* [[Documentation/Nightly/Modules/DataProbe|Data Probe]]    <small>(scripted, built-in)</small>
-* [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]]
+* [[Documentation/Nightly/Modules/DataStore|Data Store]]    <small>(loadable, built-in)</small>
-* [[Documentation/Nightly/Extensions/PercutaneousApproachAnalysis|Percutaneous Approach Analysis]]
+* [[Documentation/Nightly/Modules/DiceComputation|Dice Computation]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/DiceComputation|Dice Computation]] extension)</small>
-* [[Documentation/Nightly/Extensions/NeedleFinder|Needle Finder]]
+* [[Documentation/Nightly/Modules/DICOM|DICOM]]    <small>(scripted, built-in)</small>
-* [[Documentation/Nightly/Extensions/TrackerStabilizer|Tracker Stabilizer]]
+* DICOM2Full Brain Tractography    <small>(scripted, built-in)</small>
-* [[Documentation/Nightly/Extensions/iGyne|i Gyne]]
+* [[Documentation/Nightly/Modules/DicomSroExport|Dicom Sro Export]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
-* [[Documentation/Nightly/Extensions/ResectionPlanner|Resection Planner]]
+* [[Documentation/Nightly/Modules/DicomSroImport|Dicom Sro Import]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
-== Informatics ==
+* [[Documentation/Nightly/Modules/DiffusionTensorScalarMeasurements|Diffusion Tensor Scalar Measurements]]    <small>(cli, built-in)</small>
-* [[Documentation/Nightly/Extensions/Reporting|Reporting]]
+* [[Documentation/Nightly/Modules/DiffusionWeightedVolumeMasking|Diffusion Weighted Volume Masking]]    <small>(cli, built-in)</small>
-* [[Documentation/Nightly/Extensions/CurveMaker|Curve Maker]]
+* [[Documentation/Nightly/Modules/DistanceMapBasedRegistration|Distance Map Based Registration]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerProstate|Slicer Prostate]] extension)</small>
-* [[Documentation/Nightly/Extensions/LongitudinalPETCT|Longitudinal PETCT]]
+* [[Documentation/Nightly/Modules/DoseAccumulation|Dose Accumulation]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
-* [[Documentation/Nightly/Extensions/SlicerProstate|Slicer Prostate]]
+* [[Documentation/Nightly/Modules/Downsize|Downsize]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
-* [[Documentation/Nightly/Extensions/TCIABrowser|TCIABrowser]]
+* [[Documentation/Nightly/Modules/dPetBrainQuantification|d Pet Brain Quantification]]    <small>(scripted, bundled in [http://gti-fing.github.io/SlicerPetSpectAnalysis Pet Spect Analysis] extension)</small>
-== Mesh Generation ==
+* [[Documentation/Nightly/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small>
-* [[Documentation/Nightly/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]]
+* [[Documentation/Nightly/Extensions/DTIAtlasFiberAnalyzer|dtitractstat]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small>
-* [[Documentation/Nightly/Extensions/CleaverExtension|Cleaver Extension]]
+* [[Documentation/Nightly/Extensions/SlicerRT|Dvh Comparison]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
-== Microscopy ==
+* DWIConvert    <small>(cli, built-in)</small>
-* [[Documentation/Nightly/Extensions/IASEM|IASEM]]
+* [[Documentation/Nightly/Modules/DWIJointRicianLMMSEFilter|DWIJoint Rician LMMSEFilter]]    <small>(cli, built-in)</small>
-== Nuclear Medicine ==
+* [[Documentation/Nightly/Modules/DWIRicianLMMSEFilter|DWIRician LMMSEFilter]]    <small>(cli, built-in)</small>
-* [http://gti-fing.github.io/SlicerPetSpectAnalysis Pet Spect Analysis]
+* [[Documentation/Nightly/Modules/DWIToDTIEstimation|DWITo DTIEstimation]]    <small>(cli, built-in)</small>
-== Quantification ==
+* [[Documentation/Nightly/Modules/Editor|Editor]]    <small>(scripted, built-in)</small>
-* [[Documentation/Nightly/Extensions/PkModeling|Pk Modeling]]
+* [[Documentation/Nightly/Modules/EMSegment|EMSegment]]    <small>(loadable, built-in)</small>
-* [[Documentation/Nightly/Extensions/T1_Mapping|T1 Mapping]]
+* EMSegment Command Line    <small>(cli, built-in)</small>
-* [[Documentation/Nightly/Extensions/DiceComputation|Dice Computation]]
+* EMSegment Quick    <small>(loadable, built-in)</small>
-* [[Documentation/Nightly/Extensions/PET-IndiC|PET-Indi C]]
+* EMSegment Transform To New Format    <small>(cli, built-in)</small>
-== Radiotherapy ==
+* [[Documentation/Nightly/Modules/Endoscopy|Endoscopy]]    <small>(scripted, built-in)</small>
-* [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]]
+* [[Documentation/Nightly/Modules/ExtractSkeleton|Extract Skeleton]]    <small>(cli, built-in)</small>
-* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis]
+* [[Documentation/Nightly/Modules/FastGrowCut|Fast Grow Cut]]    <small>(loadable, bundled in [[Documentation/4.3/Modules/FastGrowCut|Fast Grow Cut Effect]] extension)</small>
-== Registration ==
+* [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|Fast Grow Cut Segmenter]]    <small>(loadable, bundled in [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|Carrera Slice]] extension)</small>
-* [[Documentation/Nightly/Extensions/CMFreg|CMFreg]]
+* Fiber Bundle Label Select    <small>(cli, built-in)</small>
-* [[Documentation/Nightly/Extensions/PBNRR|PBNRR]]
+* [[Documentation/Nightly/Modules/FiberBundleToLabelMap|Fiber Bundle To Label Map]]    <small>(scripted, built-in)</small>
-== Remote ==
+* [[Documentation/Nightly/Extensions/DTIAtlasFiberAnalyzer|Fiber Compare]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small>
-* [[Documentation/Nightly/Extensions/XNATSlicer|XNATSlicer]]
+* Fiber Tract Measurements    <small>(cli, built-in)</small>
-== Scoliosis ==
+* [[Documentation/Nightly/Modules/FiducialRegistration|Fiducial Registration]]    <small>(cli, built-in)</small>
-* [[Documentation/Nightly/Extensions/Scoliosis|Scoliosis]]
+* [[Documentation/Nightly/Extensions/SlicerIGT|Fiducial Registration Wizard]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
-== Segmentation ==
+* [[Documentation/Nightly/Extensions/SlicerIGT|Fiducials To Model Registration]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
-* [[Documentation/Nightly/Extensions/OpenCAD|Open CAD]]
+* [[Documentation/Nightly/Modules/FinslerBacktracing|Finsler Backtracing]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/FinslerTractography|Finsler Tractography]] extension)</small>
-* [[Documentation/Nightly/Extensions/SwissSkullStripper|Swiss Skull Stripper]]
+* [[Documentation/Nightly/Modules/FinslerTractography|Finsler Tractography]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/FinslerTractography|Finsler Tractography]] extension)</small>
-* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]
+* [[Documentation/Nightly/Modules/GaussianBlurImageFilter|Gaussian Blur Image Filter]]    <small>(cli, built-in)</small>
-* [[Documentation/Nightly/Extensions/SkullStripper|Skull Stripper]]
+* [[Documentation/Nightly/Modules/GelDosimetry|Gel Dosimetry Analysis Algo]]    <small>(loadable, bundled in [[Documentation/Nightly/Modules/GelDosimetry|Gel Dosimetry Analysis]] extension)</small>
-* [[Documentation/Nightly/Extensions/PETTumorSegmentation|PETTumor Segmentation]]
+* [[Documentation/Nightly/Modules/GradientAnisotropicDiffusion|Gradient Anisotropic Diffusion]]    <small>(cli, built-in)</small>
-* [[Documentation/Nightly/Extensions/LAScarSegmenter|LAScar Segmenter]]
+* [[Documentation/Nightly/Modules/GrayscaleFillHoleImageFilter|Grayscale Fill Hole Image Filter]]    <small>(cli, built-in)</small>
-* [https://github.com/Tomnl/Slicer-Wasp Wasp]
+* [[Documentation/Nightly/Modules/GrayscaleGrindPeakImageFilter|Grayscale Grind Peak Image Filter]]    <small>(cli, built-in)</small>
-* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation]
+* [[Documentation/Nightly/Modules/GrayscaleModelMaker|Grayscale Model Maker]]    <small>(cli, built-in)</small>
-* [[Documentation/Nightly/Extensions/SobolevSegmenter|Sobolev Segmenter]]
+* [[Documentation/Nightly/Modules/Growing|Growing]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
-* [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect]
+* [[Documentation/Nightly/Modules/GyroGuide|Gyro Guide]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/GyroGuide|Gyro Guide]] extension)</small>
-* [[Documentation/Nightly/Extensions/IntensitySegmenter|Intensity Segmenter]]
+* [[Documentation/Nightly/Modules/HeterogeneityCAD|Heterogeneity CAD]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/OpenCAD|Open CAD]] extension)</small>
-* [[Documentation/Nightly/Extensions/VolumeClip|Volume Clip]]
+* [[Documentation/Nightly/Modules/HistogramMatching|Histogram Matching]]    <small>(cli, built-in)</small>
-== Sequences ==
+* [[Documentation/Nightly/Extensions/IASEM|IASEMImport]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small>
-* [[Documentation/Nightly/Extensions/Sequences|Sequences]]
+* [[Documentation/Nightly/Extensions/IASEM|IASEMImport Series]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small>
-== Shape Analysis ==
+* [[Documentation/Nightly/Extensions/iGyne|i Gyne]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/iGyne|i Gyne]] extension)</small>
-* [[Documentation/Nightly/Extensions/MeshToLabelMap|Mesh To Label Map]]
+* [[Documentation/Nightly/Modules/ImageLabelCombine|Image Label Combine]]    <small>(cli, built-in)</small>
-== Tractography ==
+* [[Documentation/Nightly/Modules/IntensityDifferenceMetric|Intensity Difference Metric]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/ChangeTracker|Change Tracker]] extension)</small>
-* [[Documentation/Nightly/Extensions/FinslerTractography|Finsler Tractography]]
+* [[Documentation/Nightly/Extensions/IntensitySegmenter|Intensity Segmenter]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/IntensitySegmenter|Intensity Segmenter]] extension)</small>
-== Training ==
+* [[Documentation/Nightly/Modules/Isodose|Isodose]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
-* [[Documentation/Nightly/Extensions/PerkTutor|Perk Tutor]]
+* [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|KUtil]]    <small>(scripted, bundled in [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|Carrera Slice]] extension)</small>
-== Utilities ==
+* [[Documentation/Nightly/Modules/LabelAddition|Label Addition]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
-* [[Documentation/Nightly/Extensions/ThingiverseBrowser|Thingiverse Browser]]
+* [[Documentation/Nightly/Modules/LabelExtraction|Label Extraction]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
-== Vascular Modeling Toolkit ==
+* [[Documentation/Nightly/Modules/LabelMapSmoothing|Label Map Smoothing]]    <small>(cli, built-in)</small>
-* [http://slicer.vmtk.org/ VMTK]
+* [[Documentation/Nightly/Extensions/IASEM|Label Object Statistics]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small>
-== Wizards ==
+* [[Documentation/Nightly/Modules/LabelStatistics|Label Statistics]]    <small>(scripted, built-in)</small>
-* [[Documentation/Nightly/Extensions/ChangeTracker|Change Tracker]]
+* [[Documentation/Nightly/Extensions/Reporting|Label To DICOMSEGConverter]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/Reporting|Reporting]] extension)</small>
+* [[Documentation/Nightly/Modules/LandmarkRegistration|Landmark Registration]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
+* [[Documentation/Nightly/Modules/LAScarSegmenter|LAScar Segmenter]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/LAScarSegmenter|LAScar Segmenter]] extension)</small>
+* [[Documentation/Nightly/Modules/LASegmentationWorkflow|LASegmentation Workflow]]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+* [http://slicer.vmtk.org/ Level Set Segmentation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
+* [[Documentation/Nightly/Extensions/LightWeightRobotIGT|Light Weight Robot IGT]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/LightWeightRobotIGT|Light Weight Robot IGT]] extension)</small>
+* [[Documentation/Nightly/Extensions/LongitudinalPETCT|Longitudinal PETCT]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/LongitudinalPETCT|Longitudinal PETCT]] extension)</small>
+* [[Documentation/Nightly/Modules/Markups|Markups]]    <small>(loadable, built-in)</small>
+* [[Documentation/Nightly/Extensions/SlicerIGT|Markups To Model]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
+* [[Documentation/Nightly/Modules/MaskCreation|Mask Creation]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
+* [[Documentation/Nightly/Modules/MaskScalarVolume|Mask Scalar Volume]]    <small>(cli, built-in)</small>
+* [[Documentation/Nightly/Modules/MedianImageFilter|Median Image Filter]]    <small>(cli, built-in)</small>
+* [[Documentation/Nightly/Modules/MergeModels|Merge Models]]    <small>(cli, built-in)</small>
+* [[Documentation/Nightly/Extensions/DTIAtlasFiberAnalyzer|Merge Stat With Fiber]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small>
+* [[Documentation/Nightly/Modules/MeshCompression|Mesh Compression]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]] extension)</small>
+* [[Documentation/Nightly/Extensions/MeshToLabelMap|Mesh To Label Map]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/MeshToLabelMap|Mesh To Label Map]] extension)</small>
+* [[Documentation/Nightly/Extensions/Sequences|Metafile Importer]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/Sequences|Sequences]] extension)</small>
+* [[Documentation/Nightly/Modules/ModelMaker|Model Maker]]    <small>(cli, built-in)</small>
+* [[Documentation/Nightly/Extensions/SlicerIGT|Model Registration]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
+* [[Documentation/Nightly/Modules/Models|Models]]    <small>(loadable, built-in)</small>
+* [[Documentation/Nightly/Modules/ModelToLabelMap|Model To Label Map]]    <small>(cli, built-in)</small>
+* [[Documentation/Nightly/Modules/MultiplyScalarVolumes|Multiply Scalar Volumes]]    <small>(cli, built-in)</small>
+* [[Documentation/Nightly/Modules/MultiVolumeExplorer|Multi Volume Explorer]]    <small>(loadable, built-in)</small>
+* [[Documentation/Nightly/Modules/MultiVolumeImporter|Multi Volume Importer]]    <small>(scripted, built-in)</small>
+* [[Documentation/Nightly/Modules/N4ITKBiasFieldCorrection|N4ITKBias Field Correction]]    <small>(cli, built-in)</small>
+* [[Documentation/Nightly/Extensions/NeedleFinder|Needle Finder]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/NeedleFinder|Needle Finder]] extension)</small>
+* [[Documentation/Nightly/Modules/NonGrowing|Non Growing]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
+* [[Documentation/Nightly/Modules/OpenIGTLinkIF|Open IGTLink IF]]    <small>(loadable, built-in)</small>
+* [[Documentation/Nightly/Modules/OpenIGTLinkRemote|Open IGTLink Remote]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
+* [[Documentation/Nightly/Modules/OrientScalarVolume|Orient Scalar Volume]]    <small>(cli, built-in)</small>
+* [[Documentation/Nightly/Modules/PathExplorer|Path Explorer]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
+* [[Documentation/Nightly/Extensions/PBNRR|PBNRR]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/PBNRR|PBNRR]] extension)</small>
+* Perform Metric Test    <small>(cli, built-in)</small>
+* [[Documentation/Nightly/Modules/PerkEvaluator|Perk Evaluator]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/PerkTutor|Perk Tutor]] extension)</small>
+* [[Documentation/Nightly/Extensions/PET-IndiC|PETIndi C]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PET-IndiC|PET-Indi C]] extension)</small>
+* [[Documentation/Nightly/Modules/PETStandardUptakeValueComputation|PETStandard Uptake Value Computation]]    <small>(cli, built-in)</small>
+* [[Documentation/Nightly/Extensions/LongitudinalPETCT|PETSUVImage Maker]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/LongitudinalPETCT|Longitudinal PETCT]] extension)</small>
+* [[Documentation/Nightly/Extensions/PETTumorSegmentation|PETTumor Segmentation]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/PETTumorSegmentation|PETTumor Segmentation]] extension)</small>
+* [[Documentation/Nightly/Extensions/SlicerIGT|Pivot Calibration]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
+* [[Documentation/Nightly/Modules/PkModeling|Pk Modeling]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/PkModeling|Pk Modeling]] extension)</small>
+* [[Documentation/Nightly/Extensions/SlicerRT|Planar Image]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
+* [[Documentation/Nightly/Extensions/SlicerRT|plastimatch slicer bspline]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
+* [[Documentation/Nightly/Extensions/SlicerRT|plastimatch slicer landwarp]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
+* [[Documentation/Nightly/Extensions/SlicerRT|Plastimatch Py]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
+* [[Documentation/Nightly/Extensions/SlicerRT|Plm Register]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
+* [[Documentation/Nightly/Modules/PlusRemote|Plus Remote]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
+* [[Documentation/Nightly/Modules/ProbeVolumeWithModel|Probe Volume With Model]]    <small>(cli, built-in)</small>
+* [[Documentation/Nightly/Extensions/PerkTutor|Python Metrics Calculator]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PerkTutor|Perk Tutor]] extension)</small>
+* [[Documentation/Nightly/Modules/QuadEdgeSurfaceMesher|Quad Edge Surface Mesher]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerProstate|Slicer Prostate]] extension)</small>
+* [[Documentation/Nightly/Modules/QuantitativeIndicesCLI|Quantitative Indices CLI]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/PET-IndiC|PET-Indi C]] extension)</small>
+* [[Documentation/Nightly/Modules/QuantitativeIndicesTool|Quantitative Indices Tool]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PET-IndiC|PET-Indi C]] extension)</small>
+* [[Documentation/Nightly/Modules/Reformat|Reformat]]    <small>(loadable, built-in)</small>
+* [[Documentation/Nightly/Extensions/Reporting|Reporting]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/Reporting|Reporting]] extension)</small>
+* [[Documentation/Nightly/Modules/ResampleDTIVolume|Resample DTIVolume]]    <small>(cli, built-in)</small>
+* [[Documentation/Nightly/Modules/ResampleScalarVectorDWIVolume|Resample Scalar Vector DWIVolume]]    <small>(cli, built-in)</small>
+* [[Documentation/Nightly/Modules/RobustStatisticsSegmenter|Robust Statistics Segmenter]]    <small>(cli, built-in)</small>
+* [[Documentation/Nightly/Modules/SampleData|Sample Data]]    <small>(scripted, built-in)</small>
+* [[Documentation/Nightly/Modules/ScarVisualization|Scar Visualization]]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+* [[Documentation/Nightly/Modules/SceneViews|Scene Views]]    <small>(loadable, built-in)</small>
+* [[Documentation/Nightly/Modules/SegmentationSmoothing|Segmentation Smoothing]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerProstate|Slicer Prostate]] extension)</small>
+* [[Documentation/Nightly/Modules/SegmentCAD|Segment CAD]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/OpenCAD|Open CAD]] extension)</small>
+* [[Documentation/Nightly/Extensions/Sequences|Sequence Browser]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/Sequences|Sequences]] extension)</small>
+* [[Documentation/Nightly/Extensions/Sequences|Sequences]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/Sequences|Sequences]] extension)</small>
+* [[Documentation/Nightly/Modules/SimpleFilters|Simple Filters]]    <small>(scripted, built-in)</small>
+* [[Documentation/Nightly/Modules/SimpleRegionGrowingSegmentation|Simple Region Growing Segmentation]]    <small>(cli, built-in)</small>
+* [[Documentation/Nightly/Modules/SkullStripper|Skull Stripper]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SkullStripper|Skull Stripper]] extension)</small>
+* [[Documentation/Nightly/Modules/SlicerToKiwiExporter|Slicer To Kiwi Exporter]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerToKiwiExporter|Slicer To Kiwi Exporter]] extension)</small>
+* [[Documentation/Nightly/Modules/SobolevSegmenter|Sobolev Segmenter]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SobolevSegmenter|Sobolev Segmenter]] extension)</small>
+* [[Documentation/Nightly/Extensions/IASEM|Spacing Aware Curvature Diffusion]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small>
+* [[Documentation/Nightly/Modules/SpinalCurvatureMeasurement|Spinal Curvature Measurement]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/Scoliosis|Scoliosis]] extension)</small>
+* [[Documentation/Nightly/Modules/SubjectHierarchy|Subject Hierarchy]]    <small>(loadable, built-in)</small>
+* [[Documentation/Nightly/Modules/SubtractScalarVolumes|Subtract Scalar Volumes]]    <small>(cli, built-in)</small>
+* [[Documentation/Nightly/Extensions/CMFreg|Surface Registration]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
+* [[Documentation/Nightly/Modules/SurfaceToolbox|Surface Toolbox]]    <small>(scripted, built-in)</small>
+* [[Documentation/Nightly/Modules/SUVFactorCalculator|SUVFactor Calculator]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/PETDICOM|PETDICOMExtension]] extension)</small>
+* [[Documentation/Nightly/Modules/SwissSkullStripper|Swiss Skull Stripper]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SwissSkullStripper|Swiss Skull Stripper]] extension)</small>
+* [[Documentation/Nightly/Modules/T1_Mapping|T1 Mapping]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/T1_Mapping|T1 Mapping]] extension)</small>
+* [[Documentation/Nightly/Extensions/TCIABrowser|TCIABrowser]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/TCIABrowser|TCIABrowser]] extension)</small>
+* [[Documentation/Nightly/Modules/ThingiverseBrowser|Thingiverse Browser]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/ThingiverseBrowser|Thingiverse Browser]] extension)</small>
+* [[Documentation/Nightly/Modules/ThresholdScalarVolume|Threshold Scalar Volume]]    <small>(cli, built-in)</small>
+* [[Documentation/Nightly/Modules/TrackerStabilizer|Tracker Stabilizer]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/TrackerStabilizer|Tracker Stabilizer]] extension)</small>
+* [[Documentation/Nightly/Modules/TractographyDisplay|Tractography Display]]    <small>(loadable, built-in)</small>
+* Tractography Interactive Seeding    <small>(loadable, built-in)</small>
+* [[Documentation/Nightly/Modules/TractographyLabelMapSeeding|Tractography Label Map Seeding]]    <small>(cli, built-in)</small>
+* [[Documentation/Nightly/Extensions/SlicerIGT|Transform Fusion]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
+* [[Documentation/Nightly/Modules/TransformRecorder|Transform Recorder]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/PerkTutor|Perk Tutor]] extension)</small>
+* [[Documentation/Nightly/Modules/Transforms|Transforms]]    <small>(loadable, built-in)</small>
+* [[Documentation/Nightly/Extensions/SlicerIGT|Ultrasound Snapshots]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
+* [[Documentation/Nightly/Modules/Units|Units]]    <small>(loadable, built-in)</small>
+* VBRAINSDemon Warp    <small>(cli, built-in)</small>
+* [[Documentation/Nightly/Modules/VectorToScalarVolume|Vector To Scalar Volume]]    <small>(scripted, built-in)</small>
+* [http://slicer.vmtk.org/ Vesselness Filtering]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
+* [[Documentation/Nightly/Extensions/SlicerRT|Vff File Reader]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
+* [[Documentation/Nightly/Modules/ViewControllers|View Controllers]]    <small>(loadable, built-in)</small>
+* [[Documentation/Nightly/Extensions/VolumeClip|Volume Clip With Model]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/VolumeClip|Volume Clip]] extension)</small>
+* [[Documentation/Nightly/Modules/VolumeRendering|Volume Rendering]]    <small>(loadable, built-in)</small>
+* [[Documentation/Nightly/Modules/VolumeResliceDriver|Volume Reslice Driver]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
+* [[Documentation/Nightly/Modules/Volumes|Volumes]]    <small>(loadable, built-in)</small>
+* [[Documentation/Nightly/Modules/VotingBinaryHoleFillingImageFilter|Voting Binary Hole Filling Image Filter]]    <small>(cli, built-in)</small>
+* [https://github.com/Tomnl/Slicer-Wasp Wasp]    <small>(scripted, bundled in [https://github.com/Tomnl/Slicer-Wasp Wasp] extension)</small>
+* [[Documentation/Nightly/Extensions/SlicerIGT|Watchdog]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
+* [[Documentation/Nightly/Modules/Welcome|Welcome]]    <small>(loadable, built-in)</small>
+* [[Documentation/Nightly/Extensions/WindowLevelEffect|Window Level Effect]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/WindowLevelEffect|Window Level Effect]] extension)</small>
+* [[Documentation/Nightly/Modules/WorkflowSegmentation|Workflow Segmentation]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/PerkTutor|Perk Tutor]] extension)</small>
+* [[Documentation/Nightly/Extensions/XNATSlicer|Xnat Slicer]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/XNATSlicer|XNATSlicer]] extension)</small>

Difference between revisions of "User:UpdateBot/Issue-2843-Consolidated-Extension-List/Nightly/ModuleExtensionListing"

Latest revision as of 02:40, 27 November 2019

Modules by category

BRAINS

LabelStatistics

Cardiac MRI Toolkit

CMF Registration

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Converters

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Editor Extensions

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Diffusion Tensor Images

Diffusion Weighted Images

FiberAnalysis

Tractography

Editor Effects

EditorEffect

Endoscopy

Examples

Exporter

Filtering

Arithmetic

Denoising

Morphology

IGT

Informatics

Legacy

Converters

Diffusion

Denoising

Diffusion Data Conversion

Filtering

Registration

Work in Progress

Diffusion Tensor

Test

Mesh Generation

MeshGeneration

Microscopy

MultiVolume Support

Perk Tutor

Plastimatch

Registration

Utilities

Quantification

ChangeQuantification

Radiotherapy

Registration

Label Registration

Specialized

Segmentation

Specialized

Sequences

Shape Analysis

Slicelets

Surface Models

Testing

IGT Tests

TestCases

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Utilities

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Vascular Modeling Toolkit

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