Difference between revisions of "Documentation/4.2"
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: Set of common questions/answers | : Set of common questions/answers | ||
* [http://massmail.bwh.harvard.edu/mailman/listinfo/slicer-users Users mailing list] / [http://massmail.bwh.harvard.edu/mailman/listinfo/slicer-users Sign-up] / [http://slicer-users.65878.n3.nabble.com/ Browse archives] | * [http://massmail.bwh.harvard.edu/mailman/listinfo/slicer-users Users mailing list] / [http://massmail.bwh.harvard.edu/mailman/listinfo/slicer-users Sign-up] / [http://slicer-users.65878.n3.nabble.com/ Browse archives] | ||
+ | *If you need to cite Slicer, please use [http://www.slicer.org/pages/UserOrientation these references]. | ||
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<span style="color: #555555; font-size: 18px; font-weight: bold;">How to</span> | <span style="color: #555555; font-size: 18px; font-weight: bold;">How to</span> | ||
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− | * [[Documentation/{{documentation/version}}/Report a problem|Report a problem]] | + | * [[Documentation/{{documentation/version}}/Report a problem|Report a problem]] / [[Documentation/{{documentation/version}}/Create_a_feature_request|Create a feature request]]{{new}} |
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* [[#Legacy|Legacy]] | * [[#Legacy|Legacy]] | ||
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− | {{note}} What are these categories ? See [http://wiki.slicer.org/ | + | {{note}} What are these categories ? See [http://wiki.slicer.org/wiki/Documentation/{{documentation/version}}/Extensions/CatalogPolicies here] |
− | * [[#Cat_1|Category 1]] | + | * [[#Cat_1|Category 1]] |
− | * [[#Cat_2|Category 2]] | + | * [[#Cat_2|Category 2]] |
− | * [[#Cat_3|Category 3]] | + | * [[#Cat_3|Category 3]] |
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* [[Documentation/{{documentation/version}}/Announcements|Announcements]] & [http://www.slicer.org/pages/Acknowledgments#Acknowledgments_Slicer_4 Acknowledgments] | * [[Documentation/{{documentation/version}}/Announcements|Announcements]] & [http://www.slicer.org/pages/Acknowledgments#Acknowledgments_Slicer_4 Acknowledgments] | ||
− | * [http://na-mic.org/Wiki/index.php/Projects:RegistrationDocumentation:RegLibTable Slicer Registration Case Library] | + | * [http://na-mic.org/Wiki/index.php/Projects:RegistrationDocumentation:RegLibTable Slicer Registration Case Library] |
: Real-life example cases of using the Slicer registration tools, incl. datasets and step-by-step instructions to follow and try yourself. | : Real-life example cases of using the Slicer registration tools, incl. datasets and step-by-step instructions to follow and try yourself. | ||
Latest revision as of 17:05, 21 November 2019
Home < Documentation < 4.2
For the latest Slicer documentation, visit the read-the-docs. |
Nightly 4.10 4.8 4.6 4.5 4.4 4.3 4.2 4.1 4.0 3.6 3.5 3.4 3.2 ALL VERSIONS
Where to start ?
How to Slicer Application
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Module Categories
Extension Categories NEW
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Developers Corner
Miscellaneous
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Modules by Category
Core Modules
- Annotations (Nicole Aucoin)
- Colors (Nicole Aucoin)
- Data (Julien Finet)
- DICOM (Steve Pieper)
- Editor (Steve Pieper)
- Models (Nicole Aucoin)
- SceneViews (Nicole Aucoin)
- Transforms (Alex Yarmarkovich)
- View Controllers (Jim Miller)
- Volumes (Steve Pieper)
- Volume Rendering (Julien Finet)
- Welcome to Slicer (Wendy Plesniak)
Wizards
- ChangeTracker (Andrey Fedorov)
Informatics
- Sample Data (Steve Pieper)
Registration
- Introduction to Registration (Dominik Meier)
- General Brainsfit Registration (Hans Johnson)
- Resample Image (BRAINS) (Hans Johnson)
- Specialized
- ACPC Transform (Nicole Aucoin)
- Demon Registration (BRAINS) (Hans Johnson)
- Fiducial Registration (Stephen Aylward)
- Vector Demon Registration (Hans Johnson)
- Reformat (Michael Jeulin-Lagarrigue)
Segmentation
- EMSegment Easy (no atlas) (Kilian Pohl)
- EMSegment (with atlas) (Kilian Pohl)
- Simple Region Growing Segmentation (Jim Miller, Harini Veeraraghavan)
- Specialized
- EMSegment Command-line (Kilian Pohl)
- Foreground Masking (BRAINS) (Hans Johnson)
- Robust Statistics Segmenter (Yi Gao)
Quantification
- Data Probe (Steve Pieper)
- Label Statistics (Steve Pieper)
- PET Standard Uptake Value Computation (Nicole Aucoin)
- Change quantification
- Intensity Difference Metric (Andrey Fedorov)
Diffusion
- DWI to Full Brain Tractography (Demian Wasserman)
- Denoising
- DWI Joint Rician LMMSE Image Filter (Demian Wasserman)
- DWI Rician LMMSE Filter (Demian Wasserman)
- DWI Joint Rician LMMSE Image Filter (Demian Wasserman)
- Tractography
- Tractography Display (Demian Wasserman)
- Tractography Interactive Seeding (Alex Yarmarkovich)
- Tractography Label Map Seeding (Demian Wasserman)
- UKFTractography
- Tractography Display (Demian Wasserman)
- Utilities
- DWI To DTI Estimation (Demian Wasserman)
- Diffusion Tensor Scalar Measurements (Demian Wasserman)
- Diffusion Weighted Volume Masking (Demian Wasserman)
- Resample DTI Volume (Demian Wasserman)
- DWI To DTI Estimation (Demian Wasserman)
- Data Conversion
IGT
- OpenIGTLink IF (Junichi Tokuda)
- Volume Reslice Driver (Junichi Tokuda)
Filtering
- N4ITK Bias Field Correction (Andrey Fedorov)
- CheckerBoard Filter (Jim Miller)
- Extract Skeleton (Jim Miller)
- Histogram Matching (Jim Miller)
- Image Label Combine (Alex Yarmarkovich)
- Resample Scalar/Vector/DWI Volume (Francois Budin)
- Threshold Scalar Volume (Nicole Aucoin)
- Voting Binary Hole Filling Image Filter (Jim Miller)
- Arithmetic
- Add Scalar Volumes (Jim Miller)
- Cast Scalar Volume (Nicole Aucoin)
- Mask Scalar Volume (Nicole Aucoin)
- Multiply Scalar Volumes (Jim Miller)
- Subtract Scalar Volumes (Jim Miller)
- Add Scalar Volumes (Jim Miller)
- Denoising
- Gradient Anisotropic Diffusion (Jim Miller)
- Curvature Anisotropic Diffusion (Jim Miller)
- Gaussian Blur Image Filter (Stephen Aylward)
- Median Image Filter (Jim Miller)
- Gradient Anisotropic Diffusion (Jim Miller)
- Morphology
- Grayscale Fill Hole Image Filter (Jim Miller)
- Grayscale Grind Peak Image Filter (Jim Miller)
Surface Models
- Grayscale Model Maker (Jim Miller)
- Label Map Smoothing
- Merge Models (Nicole Aucoin)
- Model Maker (Nicole Aucoin)
- Model To LabelMap (Nicole Aucoin)
- Probe Volume With Model (Lauren O'Donnell)
Converters
- Create DICOM Series (Jim Miller)
- Crop Volume (Andrey Fedorov)
- Dicom to Nrrd Converter (Jim Miller)
- Orient Scalar Volume (Jim Miller)
- Vector to Scalar Volume (Steve Pieper)
Endoscopy
- Endoscopy (Steve Pieper)
Work in Progress ![tumb](/w/img_auth.php/thumb/4/44/UnderConstruction.png/10px-UnderConstruction.png)
- MultiVolume Support
- MultiVolume Importer (Andrey Fedorov)
- MultiVolume Explorer (Andrey Fedorov)
Developer Tools
- Cameras (Julien Finet)
- Event Broker (Julien Finet)
- Execution Model Tour (JC Fillion-Robin)
- Module Template (JC Fillion-Robin)
- Performance Tests
- Tractography
Legacy
- Converters
- Diffusion
- Denoising
- Filtering
- MRI Bias Field Correction (Sylvain Jaume)
- Otsu Threshold Image Filter (Bill Lorensen)
- Resample Scalar Volume (Jim Miller)
- MRI Bias Field Correction (Sylvain Jaume)
- Registration
- Rigid Registration (Jim Miller)
- Affine Registration (Daniel Blezek)
- BSpline Deformable Registration
- Expert Automated Registration
- Linear Registration
- MultiResolution Affine Registration (Casey Goodlett)
- Rigid Registration (Jim Miller)
- Segmentation
- Otsu Threshold Segmentation (Bill Lorensen)
- Otsu Threshold Segmentation (Bill Lorensen)
Extensions by Category
Cat 1
Cat 2
- SkullStripper (Xiaodong Tao)
- CARMA (Alan Morris)
- PkModeling (Emma Zhu, Jim Miller)
- FacetedVisualizer (Harini Veeraraghavan, Jim Miller)
- Reporting (Andrey Fedorov, Nicole Aucoin, Steve Pieper) (work in progress)
- SlicerRT (Csaba Pinter, Andras Lasso, Kevin Wang, Steve Pieper)
- VolumeResliceDriver (Junichi Tokuda, Laurent Chauvin)
- IGyne (Guillaume Pernelle, Xiaojun Chen, Yi Gao, Jan Egger)
- LongitudinalPETCT (Paul Mercea, Andrey Fedorov)
- TubeTK (Stephen Aylaward, Jean-Christophe Fillion-Robin, Christopher Mullins, Michael Jeulin-L, Matthew McCormick)
- UKFTractography (Ryan Eckbo, Yogesh Rathi)
- XNATSlicer (Sunil Kumar, Dan Marcus, Steve Pieper)
- Port Placement (Andinet Enquobahrie, Luis G. Torres)
Cat 3
- LesionSegmentation (Mark Scully)
- LesionSegmentation->TrainModel (Mark Scully)
- LesionSegmentation->PredictLesions (Mark Scully)