Documentation/4.2/Extensions/SlicerRT

For the latest Slicer documentation, visit the read-the-docs.

Introduction and Acknowledgements

Authors: Csaba Pinter (PerkLab, Queen's University), Andras Lasso (PerkLab, Queen's University), Kevin Wang (Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto)
Contributors: Greg Sharp (Massachusetts General Hospital), Steve Pieper (Isomics)
Contacts:

• Andras Lasso, <email>lasso@cs.queensu.ca</email>
• Mailing list, <email>slicerrt@alerts.assembla.com</email> (need to register to Assembla using the email address from which the email is sent)
• How to report an error

Website: slicerrt.org
License: Slicer license

Extension Description

SlicerRT is one of the themes of the SparKit (Software Platform and Adaptive Radiotherapy Kit) project with the goal of making 3D Slicer a powerful radiotherapy research platform. SparKit is a project funded by Cancer Care Ontarioand the Ontario Consortium for Adaptive Interventions in Radiation Oncology (OCAIRO) to provide free, open-source toolset for radiotherapy and related image-guided interventions. The SlicerRT extension incorporates Plastimatch modules and algorithms.

Modules

• DICOM-RT import
• Contours
• Dose volume histogram
• Dose accumulation
• Dose comparison
• Isodose line and surface display
• Contour comparison
• Contour morphology
• Transform visualizer (moved to separate extension)

• Modules from Plastimatch (Greg Sharp)
  • Plastimatch Automatic deformable image registration (Greg Sharp)
  • Plastimatch DICOM-RT import (Greg Sharp)
  • Plastimatch DICOM-RT export (Greg Sharp)
  • Plastimatch LANDWARP Landmark (Greg Sharp)
  • Plastimatch XFORMWARP (Greg Sharp)

Important note: BSpline Deformable registration and LANDWARP modules do not show up for Slicer 4.2 on Mac

Use Cases

• Comparison of dose maps and dose volume histograms from various treatment planning systems
• Evaluation of the effect of image-based non-rigid patient motion compensation
• Dose accumulation with motion compensation

Tutorials

• Summer NA-MIC week 2013 tutorial
  • Tutorial presentation: download from Slicer wiki
  • Sample data: download from MIDAS
• ECR 2013 - Medical University Vienna workshop
  • Workshop material: download from NA-MIC.org
• RSNA 2012 tutorial
  • Tutorial description: SlicerRT wiki: Slicer tutorials at RSNA 2012
  • Sample data: download SlicerRT ART dose verification data from Midas server
• Summer NA-MIC week 2012 tutorial
  • Tutorial presentation: download from the SlicerRT website
  • Sample data: download from the SlicerRT website

Similar Extensions

• Plastimatch: SlicerRT and Plastimatch are complementary software libraries. Plastimatch focuses on delivering new computational methods radiotherapy, while SlicerRT aims for providing an easy-to-use interface for a wide range of stable, well-tested radiotherapy related features. SlicerRT uses Plastimatch internally for certain operations.

References

• SlicerRT users guide pages