Documentation/Nightly/ModuleExtensionListing/Modules by contributing individual

• Modules by contributing individual

Modules by contributing individual

222 contributing individuals:

• '
• )
• A
• a
• Adam Rankin (Robarts)
• Akila Viswanathan
• Alan Morris (Utah)
• Alex Yarmakovich (Isomics)
• Alex Yarmarkovich (Kitware))
• Ali Ghayoor
• Alireza Mehrtash (SPL and BWH)
• Allen Tannenbaum (Stony Brook University)
• Alvaro Gomez (Facultad de Ingenieria, Uruguay)
• Amelie Meyer (PerkLab, Queen's University)
• Analysis Laboratory
• Andras Lasso (PerkLab, Queen's Universit)
• Andreas Freudling (SPL, BWH)
• Andrey Fedorov (SPL/BWH)
• Andriy Fedorov (BWH)
• Andriy Kot (CRTC)
• Anonymous
• Antonio Damato
• Antonio Tristan Vega (UVa)
• Anuja Sharma
• Applied Chest Imaging Laboratory
• Artem Mamonov (MGH)
• Atsushi Yamada (Shiga University of Medical Science)
• b
• Beatriz Paniagua from Department of Orthodontics (UNC)
• Benjamin Long (Kitware)
• Benjamin Yvernault
• Bill Lorensen (Noware)
• Brad Davis
• Bradley Lowekamp (MSC/NLM)
• Brian Zenger (CARMA)
• Brigham
• BWH
• C
• Carl-Fredrik Westin
• Carl-Fredrik Westin. The directional iterators were contributed by Luis Ibanez (Kitware))
• Casey B Goodlett (Kitware)
• Charles Marion (Kitware)
• Christian Bauer (Univ. of Iowa)
• Christian Baumgartner
• Csaba Pinter (PerkLab, Queen's University)
• d
• Daniel Blezek (GE)
• Daniel Haehn (SPL, BWH, UPenn)
• Danny Perry (Utah)
• Demian Wassermann (Brigham and Women's Hospital)
• Dirk Padfield (GE)
• Dominik Meier (SPL, BWH)
• e
• er (KGH, Queen's University)
• Ethan Ulrich (Univ. of Iowa)
• Eugene Kholmovski (CARMA)
• ez (UVa)
• Fotis Drakopoulos (CRTC)
• Francois Budin (NIRAL, UNC)
• Franklin King (PerkLab, Queen's University)
• g
• Gabor Fichtinger (Queen's University, PerkLab)
• Gopalkrishna Veni
• Greg Gardner (Utah)
• Greg Harris
• Gregory Sharp (MGH)
• Guido Gerig (UNC)
• Guillaume Pernelle
• Guillermo Carbajal (Facultad de Ingenieria, Uruguay)
• H
• Hans J. Johnson
• Hans Johnson (SINAPSE)
• hans-johnson -at- uiowa.edu
• http://www.psychiatry.uiowa.edu
• i
• Ipek Oguz
• Ivan Kolesov (Stony Brook University)
• Jaime Garcia Guevara (Queen's University)
• Jaime Garcia-Guevara (Queen's University)
• Jan Egger
• Jayashree Kalpathy-Cramer (MGH)
• Jayender Jagadeesan (BWH)
• Jean-Baptiste Berger (Kitware)
• Jean-Christophe Fillion-Robin (Kitware)
• Jennifer Andrea (PerkLab, Queen's University)
• Jessica Forbes (SINAPSE)
• Jessica Lee
• Jim Miller (GE)
• Johan Andruejol (Kitware)
• John Buatti (Univ. of Iowa)
• John Evans (MGH)
• Jonathan Bronson (SCI Institute)
• Jorge Onieva (jonieva@bwh.harvard.edu)
• Josh Cates (Utah)
• Joy Matsui (UIowa)
• Juan Carlos Prieto
• Julia Lopinto (University of Michigan)
• Julien Finet (Kitware)
• Julien Jomier (Kitware)
• Junichi Tokuda (BWH)
• K
• Kaci Carter (Queen's University, PerkLab)
• Kent Williams (UIowa)
• Kent WIlliams
• Kevin Alex (KGH, Queen's University)
• Kevin Wang (Princess Margaret Cancer Centre)
• Kilian M Pohl (SRI/Stanford)
• Kilian Pohl (UPenn)
• Koichiro Murakami (SUMS)
• Kyle Sunderl (Queen's University)
• L
• Lauren Barber
• Lauren J. O'Donnell (SPL, BWH)
• Lauren O'Donnell (SPL, BWH)
• Laurent Chauvin (BWH)
• Liangjia Zhu (Stony Brook University)
• Luca Antiga (Orobix)
• Lucie Macron (University of Michigan)
• Luping Fang (College of Information Engineering, Zhejiang University of Technology, Hangzhou, China)
• Marc Niethammer (UNC)
• Marcel Prastawa marcel.prastawa@gmail.com
• Mark Scully (Uiowa)
• Markus Van Tol (University of Iowa) and Andrey Fedorov (SPL)
• Markus van Tol (Univ. of Iowa)
• Martin Bertran (Facultad de Ingenieria, Uruguay)
• Martin Styner (UNC)
• Mason Winsauer
• Matt Lougheed (PerkLab, Queen's University)
• Mattea Welch (PerkLab, Queen's University)
• Matthew Holden (Queen's University)
• Matthew Woehlke (Kitware)
• Michael Jeulin-Lagarrigue (Kitware)
• n
• N
• Nabgha Fahrat
• Natalia Martinez
• Neuro Image Resarch
• Nicholas Herlambang (AZE R&D)
• Nick Tustison (UPenn)
• Nicole Aucoin (BWH)
• Nikos Chrisochoides (CRTC)
• o
• Olivier Clatz (Asclepios INRIA) and Nikos Chrisochoides (CRTC)
• P
• Paolo Zaffino (University 'Magna Graecia' of Catanzaro)
• Pat Marion (Kitware)
• Patricio Vela (Georgia Institute of Technology)
• Paul Mercea (University of Heidelberg)
• Pengdong Xiao (Department of Orthodontics, UNC)
• Peter Black (BWH)
• Peter Karasev (Georgia Tech)
• Peter Savadjiev (Kitware))
• Pierre Seroul (UNC)
• Pietro Nardelli (University College Cork)
• Please direct questions or suggestions to http://groups.google.com/group/plastimatch
• Polina Goll
• Q
• Qing Pan (College of Information Engineering, Zhejiang University of Technology, Hangzhou, China)
• r
• Raul San Jose (SPL, BWH)
• Reinhard Beichel (University of Iowa)
• Reinhard R. Beichel (Univ. of Iowa)
• Rob Mac Leod (Utah)
• Ron Kikinis (BWH)
• Ross Whitaker (Utah)
• Ruifeng Chen (College of Information Engineering, Zhejiang University of Technology, Hangzhou, China)
• S
• s
• Salma Bengali (CARMA)
• Sam Song
• Santiago Aja Fern (UVa)
• Sebastian Tauscher (LUH)
• Sebastien Barré (Kitware)
• Sebastien Barre
• Shigeyuki Naka (SUMS)
• Soichiro Tani (BWH, SUMS)
• Sonia Pujol (SPL, BWH)
• Stefan Lienhard
• Stephen Aylward (Kitware)
• Stephen R Aylward (Kitware)
• Steve Pieper (Isomics, Inc.)
• Sylvain Gouttard
• T
• t
• Tamas Ungi (PerkLab, Queen's Universit)
• the University of North Carolina at Chapel Hill (UNC)
• Thomas Lawson (MRC Harwell, Oxfordshire)
• Thomas Vaughan (Queen's University, PerkLab)
• Tina Kapur
• Tobias Penzkofer
• Tohru Tani (SUMS)
• u
• U
• UNC Medical School
• Uof M School Of Dentistry
• Uof M School of Dentistry
• v
• Vince Magnotta (UIowa)
• Vincent A. Magnotta
• Vincent Magnotta
• Vinicius Boen (Univ of Michigan)
• Vivek Narayan (BWH)
• W
• Wendy Plesniak (SPL, BWH)
• Women's Hopsital
• Women's Hospital
• women's hospital
• Women's hospital
• Xiao Da (MGH)
• Xiaodong Tao (GE)
• Xiaojun Chen
• y Wells
• Yanling Liu (SAIC-Frederick, NCI-Frederick)
• Yi Gao (BWH/UAB)
• Yinglin Lee (SPL, BWH)
• Yingxuan Zhu (GE)
• Yinpeng Li
• Yixun Liu (CRTC)
• Yogesh Rathi (yogesh@bwh.harvard.edu)
• Yong Zhang (IBM)
• Yumin Yuan
• Yundi Shi

'

• Dicom Rt Import Export Plugin

)

• Dicom Rt Import Export Plugin

A

• Dicom Rt Import Export Plugin

a

• Dicom Rt Import Export Plugin

Adam Rankin

• Segmentations (loadable, bundled in Slicer RT extension)

Akila Viswanathan

• i Gyne (scripted, bundled in i Gyne extension)
• Needle Finder (scripted, bundled in Needle Finder extension)

Alan Morris

• CMRToolkit Automatic Left Atrial Scar (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Axial Dilate (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Boolean REMOVEFilter (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Connected Threshold Filter (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Inhomogeneity Correction (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Isolated Connected Filter (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit LASegmentation Graph Cuts (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit PVAntrum Cut (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Registration (scripted, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Registration BRAINSFit (scripted, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Wizard (scripted, bundled in Cardiac MRI Toolkit extension)
• LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
• LASegmentation Workflow (scripted, bundled in Cardiac MRI Toolkit extension)
• Scar Visualization (scripted, bundled in Cardiac MRI Toolkit extension)

Alex Yarmakovich

• Models (loadable, built-in)
• Tractography Interactive Seeding (loadable, built-in)

Alex Yarmarkovich

• Data (loadable, built-in)
• Fiber Tract Measurements (cli, built-in)
• Finsler Backtracing (cli, bundled in Finsler Tractography extension)
• Finsler Tractography (cli, bundled in Finsler Tractography extension)
• Image Label Combine (cli, built-in)
• Transforms (loadable, built-in)
• Volume Rendering (loadable, built-in)
• Volumes (loadable, built-in)

Ali Ghayoor

• BRAINSTransform Convert (cli, built-in)
• Perform Metric Test (cli, built-in)

Alireza Mehrtash

• i Gyne (scripted, bundled in i Gyne extension)
• Needle Finder (scripted, bundled in Needle Finder extension)
• TCIABrowser (scripted, bundled in TCIABrowser extension)

Allen Tannenbaum

• Carrera Slice Effect (scripted, bundled in Carrera Slice extension)
• Fast Grow Cut Effect (scripted, bundled in Fast Grow Cut Effect extension)
• LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
• Robust Statistics Segmenter (cli, built-in)

Alvaro Gomez

• d Pet Brain Quantification (scripted, bundled in Pet Spect Analysis extension)

Amelie Meyer

• Plus Remote (scripted, bundled in Slicer IGT extension)

Analysis Laboratory

• Apply Matrix (cli, bundled in CMFreg extension)
• Downsize (cli, bundled in CMFreg extension)
• Growing (cli, bundled in CMFreg extension)
• Label Addition (cli, bundled in CMFreg extension)
• Label Extraction (cli, bundled in CMFreg extension)
• Mask Creation (cli, bundled in CMFreg extension)
• Non Growing (cli, bundled in CMFreg extension)

Andras Lasso

• Breach Warning (loadable, bundled in Slicer IGT extension)
• Dicom Rt Import Export (loadable, bundled in Slicer RT extension)
• Distance Map Based Registration (scripted, bundled in Slicer Prostate extension)
• Dose Accumulation (loadable, bundled in Slicer RT extension)
• Dose Comparison (loadable, bundled in Slicer RT extension)
• Dose Volume Histogram (loadable, bundled in Slicer RT extension)
• Extension Stats (scripted, bundled in Developer Tools For Extensions extension)
• Isodose (loadable, bundled in Slicer RT extension)
• Markups To Model (loadable, bundled in Slicer IGT extension)
• Matlab Commander (cli, bundled in Matlab Bridge extension)
• Matlab Module Generator (loadable, bundled in Matlab Bridge extension)
• Model Registration (scripted, bundled in Slicer IGT extension)
• Plus Remote (scripted, bundled in Slicer IGT extension)
• Py Dev Remote Debug (scripted, bundled in Py Dev Remote Debug extension)
• Segmentations (loadable, bundled in Slicer RT extension)
• Segment Comparison (loadable, bundled in Slicer RT extension)
• Segment Morphology (loadable, bundled in Slicer RT extension)
• Sequence Browser (loadable, bundled in Sequences extension)
• Tracker Stabilizer (loadable, bundled in Tracker Stabilizer extension)
• Transforms (loadable, built-in)
• Viewpoint (scripted, bundled in Lump Nav extension)
• Volume Clip With Model (scripted, bundled in Volume Clip extension)
• Volume Clip With Roi (scripted, bundled in Volume Clip extension)
• Watchdog (loadable, bundled in Slicer IGT extension)

Andreas Freudling

• Volume Rendering (loadable, built-in)

Andrey Fedorov

• Body Centric Cubic Mesh (cli, bundled in CBC 3D I2MConversion extension)
• BSpline To Deformation Field (cli, built-in)
• Change Tracker (scripted, bundled in Change Tracker extension)
• Change Tracker Self Test
• Crop Volume (loadable, built-in)
• Crop Volume Self Test
• DICOMRWVMPlugin
• Distance Map Based Registration (scripted, bundled in Slicer Prostate extension)
• Intensity Difference Metric (cli, bundled in Change Tracker extension)
• Mesh Compression (cli, bundled in CBC 3D I2MConversion extension)
• Multi Volume Explorer (loadable, built-in)
• Multi Volume Importer (scripted, built-in)
• Multi Volume Importer Plugin
• N4ITKBias Field Correction (cli, built-in)
• PBNRR (cli, bundled in PBNRR extension)
• Pk Modeling (cli, bundled in Pk Modeling extension)
• Quad Edge Surface Mesher (cli, bundled in Slicer Prostate extension)
• Quantitative Indices CLI (cli, bundled in PET-Indi C extension)
• Quantitative Indices Tool (scripted, bundled in PET-Indi C extension)
• Reporting Self Test
• Segmentation Smoothing (cli, bundled in Slicer Prostate extension)
• SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
• TCIABrowser (scripted, bundled in TCIABrowser extension)
• Window Level Effect (scripted, bundled in Window Level Effect extension)

Andriy Fedorov

• DWModeling (cli, bundled in Slicer Prostate extension)
• T1 Mapping (scripted, bundled in T1 Mapping extension)

Andriy Kot

• PBNRR (cli, bundled in PBNRR extension)

Anonymous

• CLIROITest (cli, built-in)
• EMSegment Transform To New Format (cli, built-in)

Antonio Damato

• i Gyne (scripted, bundled in i Gyne extension)
• Needle Finder (scripted, bundled in Needle Finder extension)

Antonio Tristan Vega

• DWIJoint Rician LMMSEFilter (cli, built-in)
• DWIRician LMMSEFilter (cli, built-in)
• DWIUnbiased Non Local Means Filter (cli, built-in)
• Finsler Backtracing (cli, bundled in Finsler Tractography extension)
• Finsler Tractography (cli, bundled in Finsler Tractography extension)

Anuja Sharma

• dtitractstat (cli, bundled in DTIAtlas Fiber Analyzer extension)

Applied Chest Imaging Laboratory

• CIP Body Composition (scripted, bundled in Chest Imaging Platform extension)
• CIP Common (scripted, bundled in Chest Imaging Platform extension)
• CIP Get Image (scripted, bundled in Chest Imaging Platform extension)
• Classify Fissure Particles (cli, bundled in Chest Imaging Platform extension)
• Compute Cross Sectional Area (cli, bundled in Chest Imaging Platform extension)
• Compute Distance Map (cli, bundled in Chest Imaging Platform extension)
• Compute Feature Strength (cli, bundled in Chest Imaging Platform extension)
• Compute Fissure Feature Vectors (cli, bundled in Chest Imaging Platform extension)
• Compute Intensity Statistics (cli, bundled in Chest Imaging Platform extension)
• Convert Chest Region Chest Type To Label Map Value (cli, bundled in Chest Imaging Platform extension)
• Convert Dicom (cli, bundled in Chest Imaging Platform extension)
• Convert Label Map Value To Chest Region Chest Type (cli, bundled in Chest Imaging Platform extension)
• Crop Lung (cli, bundled in Chest Imaging Platform extension)
• Emphysema Subtypes (scripted, bundled in Chest Imaging Platform extension)
• Enhance Fissures In Image (cli, bundled in Chest Imaging Platform extension)
• Evaluate Lung Lobe Segmentation Results (cli, bundled in Chest Imaging Platform extension)
• Extract Chest Label Map (cli, bundled in Chest Imaging Platform extension)
• Extract Particles From Chest Region Chest Type (cli, bundled in Chest Imaging Platform extension)
• Filter Airway Particle Data (cli, bundled in Chest Imaging Platform extension)
• Filter Connected Components (cli, bundled in Chest Imaging Platform extension)
• Filter Fissure Particle Data (cli, bundled in Chest Imaging Platform extension)
• Filter Vessel Particle Data (cli, bundled in Chest Imaging Platform extension)
• Fit Lobe Surface Models To Particle Data (cli, bundled in Chest Imaging Platform extension)
• Generate Atlas Convex Hull (cli, bundled in Chest Imaging Platform extension)
• Generate Binary Thinning3D (cli, bundled in Chest Imaging Platform extension)
• Generate Distance Map From Label Map (cli, bundled in Chest Imaging Platform extension)
• Generate Image Sub Volumes (cli, bundled in Chest Imaging Platform extension)
• Generate Lesion Segmentation (cli, bundled in Chest Imaging Platform extension)
• Generate Lobe Surface Models (cli, bundled in Chest Imaging Platform extension)
• Generate Median Filtered Image (cli, bundled in Chest Imaging Platform extension)
• Generate NLMFiltered Image (cli, bundled in Chest Imaging Platform extension)
• Generate Otsu Lung Cast (cli, bundled in Chest Imaging Platform extension)
• Generate Overlay Images (cli, bundled in Chest Imaging Platform extension)
• Generate Partial Lung Label Map (cli, bundled in Chest Imaging Platform extension)
• Generate Region Histograms And Parenchyma Phenotypes (cli, bundled in Chest Imaging Platform extension)
• Generate Stenciled Label Map From Particles (cli, bundled in Chest Imaging Platform extension)
• Get Structures In Label Map (cli, bundled in Chest Imaging Platform extension)
• Get Transformation Kappa (cli, bundled in Chest Imaging Platform extension)
• Get Transformation Kappa2D (cli, bundled in Chest Imaging Platform extension)
• Get Transformation Similarity Metric (cli, bundled in Chest Imaging Platform extension)
• Label Map From Region And Type Points (cli, bundled in Chest Imaging Platform extension)
• Label Particles By Chest Region Chest Type (cli, bundled in Chest Imaging Platform extension)
• Lung Registration (scripted, bundled in Chest Imaging Platform extension)
• Mask Out Label Map Structures (cli, bundled in Chest Imaging Platform extension)
• Merge Chest Label Maps (cli, bundled in Chest Imaging Platform extension)
• Merge Particle Data Sets (cli, bundled in Chest Imaging Platform extension)
• Parenchyma Analysis (scripted, bundled in Chest Imaging Platform extension)
• Perform Morphological (cli, bundled in Chest Imaging Platform extension)
• Perturb Particles (cli, bundled in Chest Imaging Platform extension)
• Picasa Snap (scripted, bundled in Chest Imaging Platform extension)
• Quality Control (cli, bundled in Chest Imaging Platform extension)
• Read Dicom Write Tags (cli, bundled in Chest Imaging Platform extension)
• Read NRRDs Write VTK (cli, bundled in Chest Imaging Platform extension)
• Read Vida Write CIP (cli, bundled in Chest Imaging Platform extension)
• Read VTKWrite NRRDs (cli, bundled in Chest Imaging Platform extension)
• Read Write Image Data (cli, bundled in Chest Imaging Platform extension)
• Read Write Region And Type Points (cli, bundled in Chest Imaging Platform extension)
• Register CT (cli, bundled in Chest Imaging Platform extension)
• Register Label Maps (cli, bundled in Chest Imaging Platform extension)
• Register Lung Atlas (cli, bundled in Chest Imaging Platform extension)
• Remap Label Map (cli, bundled in Chest Imaging Platform extension)
• Remove Chest Type From Label Map Using Particles (cli, bundled in Chest Imaging Platform extension)
• Remove Particles From Particles Data Set (cli, bundled in Chest Imaging Platform extension)
• Resample CT (cli, bundled in Chest Imaging Platform extension)
• Resample Label Map (cli, bundled in Chest Imaging Platform extension)
• Rescale Label Map (cli, bundled in Chest Imaging Platform extension)
• Scour Particle Data (cli, bundled in Chest Imaging Platform extension)
• Segment Lung Lobes (cli, bundled in Chest Imaging Platform extension)
• Split Left Lung Right Lung (cli, bundled in Chest Imaging Platform extension)
• Transfer Field Data To From Point Data (cli, bundled in Chest Imaging Platform extension)

Artem Mamonov

• T1 Mapping (scripted, bundled in T1 Mapping extension)

Atsushi Yamada

• Corner Annotation (scripted, bundled in Corner Annotation extension)
• Path Explorer (loadable, bundled in Slicer IGT extension)
• Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)

b

• Dicom Rt Import Export Plugin

Beatriz Paniagua from Department of Orthodontics

• Intensity Segmenter (cli, bundled in Intensity Segmenter extension)

Benjamin Long

• Sample Data (scripted, built-in)

Benjamin Yvernault

• DTIAtlas Fiber Analyzer (cli, bundled in DTIAtlas Fiber Analyzer extension)

Bill Lorensen

• Add Scalar Volumes (cli, built-in)
• Checker Board Filter (cli, built-in)
• Create DICOMSeries (cli, built-in)
• Curvature Anisotropic Diffusion (cli, built-in)
• Diffusion Tensor Test (cli, built-in)
• Execution Model Tour (cli, built-in)
• Gradient Anisotropic Diffusion (cli, built-in)
• Grayscale Fill Hole Image Filter (cli, built-in)
• Grayscale Grind Peak Image Filter (cli, built-in)
• Grayscale Model Maker (cli, built-in)
• Histogram Matching (cli, built-in)
• Median Image Filter (cli, built-in)
• Model Maker (cli, built-in)
• Multiply Scalar Volumes (cli, built-in)
• Orient Scalar Volume (cli, built-in)
• Otsu Threshold Image Filter (cli, built-in)
• Resample Scalar Volume (cli, built-in)
• Spacing Aware Curvature Diffusion (cli, bundled in IASEM extension)
• Subtract Scalar Volumes (cli, built-in)
• Swiss Skull Stripper (cli, bundled in Swiss Skull Stripper extension)
• Voting Binary Hole Filling Image Filter (cli, built-in)

Brad Davis

• EMSegment Command Line (cli, built-in)

Bradley Lowekamp

• Binary Watershed Effect (scripted, bundled in IASEM extension)
• Bin Shrink (cli, bundled in IASEM extension)
• Double Threshold Effect (scripted, bundled in IASEM extension)
• IASEMImport (cli, bundled in IASEM extension)
• IASEMImport Series (cli, bundled in IASEM extension)
• Label Object Statistics (scripted, bundled in IASEM extension)
• Simple Filters (scripted, built-in)
• Spacing Aware Curvature Diffusion (cli, bundled in IASEM extension)

Brian Zenger

• CMRToolkit Wizard (scripted, bundled in Cardiac MRI Toolkit extension)

Brigham

• CIP Body Composition (scripted, bundled in Chest Imaging Platform extension)
• CIP Common (scripted, bundled in Chest Imaging Platform extension)
• CIP Get Image (scripted, bundled in Chest Imaging Platform extension)
• Classify Fissure Particles (cli, bundled in Chest Imaging Platform extension)
• Compute Cross Sectional Area (cli, bundled in Chest Imaging Platform extension)
• Compute Distance Map (cli, bundled in Chest Imaging Platform extension)
• Compute Feature Strength (cli, bundled in Chest Imaging Platform extension)
• Compute Fissure Feature Vectors (cli, bundled in Chest Imaging Platform extension)
• Compute Intensity Statistics (cli, bundled in Chest Imaging Platform extension)
• Convert Chest Region Chest Type To Label Map Value (cli, bundled in Chest Imaging Platform extension)
• Convert Dicom (cli, bundled in Chest Imaging Platform extension)
• Convert Label Map Value To Chest Region Chest Type (cli, bundled in Chest Imaging Platform extension)
• Crop Lung (cli, bundled in Chest Imaging Platform extension)
• Enhance Fissures In Image (cli, bundled in Chest Imaging Platform extension)
• Evaluate Lung Lobe Segmentation Results (cli, bundled in Chest Imaging Platform extension)
• Extract Chest Label Map (cli, bundled in Chest Imaging Platform extension)
• Extract Particles From Chest Region Chest Type (cli, bundled in Chest Imaging Platform extension)
• Filter Airway Particle Data (cli, bundled in Chest Imaging Platform extension)
• Filter Connected Components (cli, bundled in Chest Imaging Platform extension)
• Filter Fissure Particle Data (cli, bundled in Chest Imaging Platform extension)
• Filter Vessel Particle Data (cli, bundled in Chest Imaging Platform extension)
• Fit Lobe Surface Models To Particle Data (cli, bundled in Chest Imaging Platform extension)
• Generate Atlas Convex Hull (cli, bundled in Chest Imaging Platform extension)
• Generate Binary Thinning3D (cli, bundled in Chest Imaging Platform extension)
• Generate Distance Map From Label Map (cli, bundled in Chest Imaging Platform extension)
• Generate Image Sub Volumes (cli, bundled in Chest Imaging Platform extension)
• Generate Lesion Segmentation (cli, bundled in Chest Imaging Platform extension)
• Generate Lobe Surface Models (cli, bundled in Chest Imaging Platform extension)
• Generate Median Filtered Image (cli, bundled in Chest Imaging Platform extension)
• Generate NLMFiltered Image (cli, bundled in Chest Imaging Platform extension)
• Generate Otsu Lung Cast (cli, bundled in Chest Imaging Platform extension)
• Generate Overlay Images (cli, bundled in Chest Imaging Platform extension)
• Generate Partial Lung Label Map (cli, bundled in Chest Imaging Platform extension)
• Generate Region Histograms And Parenchyma Phenotypes (cli, bundled in Chest Imaging Platform extension)
• Generate Stenciled Label Map From Particles (cli, bundled in Chest Imaging Platform extension)
• Get Structures In Label Map (cli, bundled in Chest Imaging Platform extension)
• Get Transformation Kappa (cli, bundled in Chest Imaging Platform extension)
• Get Transformation Kappa2D (cli, bundled in Chest Imaging Platform extension)
• Get Transformation Similarity Metric (cli, bundled in Chest Imaging Platform extension)
• Label Map From Region And Type Points (cli, bundled in Chest Imaging Platform extension)
• Label Particles By Chest Region Chest Type (cli, bundled in Chest Imaging Platform extension)
• Lung Registration (scripted, bundled in Chest Imaging Platform extension)
• Mask Out Label Map Structures (cli, bundled in Chest Imaging Platform extension)
• Merge Chest Label Maps (cli, bundled in Chest Imaging Platform extension)
• Merge Particle Data Sets (cli, bundled in Chest Imaging Platform extension)
• Perform Morphological (cli, bundled in Chest Imaging Platform extension)
• Perturb Particles (cli, bundled in Chest Imaging Platform extension)
• Picasa Snap (scripted, bundled in Chest Imaging Platform extension)
• Quality Control (cli, bundled in Chest Imaging Platform extension)
• Read Dicom Write Tags (cli, bundled in Chest Imaging Platform extension)
• Read NRRDs Write VTK (cli, bundled in Chest Imaging Platform extension)
• Read Vida Write CIP (cli, bundled in Chest Imaging Platform extension)
• Read VTKWrite NRRDs (cli, bundled in Chest Imaging Platform extension)
• Read Write Image Data (cli, bundled in Chest Imaging Platform extension)
• Read Write Region And Type Points (cli, bundled in Chest Imaging Platform extension)
• Register CT (cli, bundled in Chest Imaging Platform extension)
• Register Label Maps (cli, bundled in Chest Imaging Platform extension)
• Register Lung Atlas (cli, bundled in Chest Imaging Platform extension)
• Remap Label Map (cli, bundled in Chest Imaging Platform extension)
• Remove Chest Type From Label Map Using Particles (cli, bundled in Chest Imaging Platform extension)
• Remove Particles From Particles Data Set (cli, bundled in Chest Imaging Platform extension)
• Resample CT (cli, bundled in Chest Imaging Platform extension)
• Resample Label Map (cli, bundled in Chest Imaging Platform extension)
• Rescale Label Map (cli, bundled in Chest Imaging Platform extension)
• Scour Particle Data (cli, bundled in Chest Imaging Platform extension)
• Segment Lung Lobes (cli, bundled in Chest Imaging Platform extension)
• Split Left Lung Right Lung (cli, bundled in Chest Imaging Platform extension)
• Transfer Field Data To From Point Data (cli, bundled in Chest Imaging Platform extension)

BWH

• Multi Volume Importer Plugin

C

• Dicom Rt Import Export Plugin

Carl-Fredrik Westin

• UKFTractography (cli, bundled in UKFTractography extension)

Carl-Fredrik Westin. The directional iterators were contributed by Luis Ibanez

• Finsler Backtracing (cli, bundled in Finsler Tractography extension)
• Finsler Tractography (cli, bundled in Finsler Tractography extension)

Casey B Goodlett

• Expert Automated Registration (cli, built-in)
• Fiducial Registration (cli, built-in)

Charles Marion

• Data Store (loadable, built-in)

Christian Bauer

• PETIndi C (scripted, bundled in PET-Indi C extension)
• PETTumor Segmentation (loadable, bundled in PETTumor Segmentation extension)
• PETTumor Segmentation Effect (scripted, bundled in PETTumor Segmentation extension)
• Quantitative Indices CLI (cli, bundled in PET-Indi C extension)
• Quantitative Indices Tool (scripted, bundled in PET-Indi C extension)
• SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)

Christian Baumgartner

• Convert VTK (cli, bundled in UKFTractography extension)
• UKFTractography (cli, bundled in UKFTractography extension)

Csaba Pinter

• Batch Structure Set Conversion (scripted, bundled in Slicer RT extension)
• Beams (loadable, bundled in Slicer RT extension)
• Data (loadable, built-in)
• Dicom Rt Import Export (loadable, bundled in Slicer RT extension)
• Dicom Rt Import Self Test
• DICOMScalar Volume Plugin
• Dose Accumulation (loadable, bundled in Slicer RT extension)
• Dose Comparison (loadable, bundled in Slicer RT extension)
• Dose Volume Histogram (loadable, bundled in Slicer RT extension)
• Dvh Comparison (scripted, bundled in Slicer RT extension)
• Gel Dosimetry Analysis (scripted, bundled in Gel Dosimetry Analysis extension)
• Gel Dosimetry Analysis Algo (loadable, bundled in Gel Dosimetry Analysis extension)
• IGRTWorkflow Self Test
• Isodose (loadable, bundled in Slicer RT extension)
• Planar Image (loadable, bundled in Slicer RT extension)
• Segmentations (loadable, bundled in Slicer RT extension)
• Segment Comparison (loadable, bundled in Slicer RT extension)
• Segment Morphology (loadable, bundled in Slicer RT extension)
• Subject Hierarchy (loadable, built-in)
• Subject Hierarchy Core Plugins Self Test
• Subject Hierarchy Generic Self Test
• Vff File Reader (loadable, bundled in Slicer RT extension)

d

• Dicom Rt Import Export Plugin

Daniel Blezek

• Execution Model Tour (cli, built-in)

Daniel Haehn

• Annotations (loadable, built-in)
• Centerline Computation (scripted, bundled in VMTK extension)
• EMSegment (loadable, built-in)
• EMSegment Command Line (cli, built-in)
• Level Set Segmentation (scripted, bundled in VMTK extension)
• Merge Models (cli, built-in)
• Scene Views (loadable, built-in)
• Vesselness Filtering (scripted, bundled in VMTK extension)

Danny Perry

• CMRToolkit Inhomogeneity Correction (cli, bundled in Cardiac MRI Toolkit extension)
• LAScar Segmenter (cli, bundled in LAScar Segmenter extension)

Demian Wassermann

• DICOM2Full Brain Tractography (scripted, built-in)
• Diffusion Weighted Volume Masking (cli, built-in)
• Fiber Bundle Label Select (cli, built-in)
• Finsler Backtracing (cli, bundled in Finsler Tractography extension)
• Finsler Tractography (cli, bundled in Finsler Tractography extension)
• test tractography display
• Tractography Label Map Seeding (cli, built-in)

Dirk Padfield

• Label Map Smoothing (cli, built-in)

Dominik Meier

• Fiducial Registration (cli, built-in)

e

• Dicom Rt Import Export Plugin

er

• Gel Dosimetry Analysis (scripted, bundled in Gel Dosimetry Analysis extension)

Ethan Ulrich

• DICOMPETSUVPlugin
• DICOMRWVMPlugin
• PETIndi C (scripted, bundled in PET-Indi C extension)
• Quantitative Indices CLI (cli, bundled in PET-Indi C extension)
• Quantitative Indices Tool (scripted, bundled in PET-Indi C extension)
• SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)

Eugene Kholmovski

• CMRToolkit Inhomogeneity Correction (cli, bundled in Cardiac MRI Toolkit extension)

ez

• DWIJoint Rician LMMSEFilter (cli, built-in)
• DWIRician LMMSEFilter (cli, built-in)
• DWIUnbiased Non Local Means Filter (cli, built-in)

Fotis Drakopoulos

• Body Centric Cubic Mesh (cli, bundled in CBC 3D I2MConversion extension)
• Mesh Compression (cli, bundled in CBC 3D I2MConversion extension)
• PBNRR (cli, bundled in PBNRR extension)

Francois Budin

• Developer Tools For Extensions (scripted, bundled in Developer Tools For Extensions extension)
• DTIAtlas Fiber Analyzer (cli, bundled in DTIAtlas Fiber Analyzer extension)
• dtitractstat (cli, bundled in DTIAtlas Fiber Analyzer extension)
• Intensity Segmenter (cli, bundled in Intensity Segmenter extension)
• Mesh To Label Map (cli, bundled in Mesh To Label Map extension)
• Resample DTIlog Euclidean (cli, bundled in Resample DTIlog Euclidean extension)
• Resample DTIVolume (cli, built-in)
• Resample Scalar Vector DWIVolume (cli, built-in)

Franklin King

• Collect Fiducials (loadable, bundled in Slicer IGT extension)
• Pivot Calibration (loadable, bundled in Slicer IGT extension)
• Plus Remote (scripted, bundled in Slicer IGT extension)
• Scoliosis Monitoring (scripted, bundled in Scoliosis extension)
• Spinal Curvature Measurement (scripted, bundled in Scoliosis extension)
• Transform Fusion (loadable, bundled in Slicer IGT extension)
• Transforms (loadable, built-in)

g

• Dicom Rt Import Export Plugin

Gabor Fichtinger

• Viewpoint (scripted, bundled in Lump Nav extension)

Gopalkrishna Veni

• CMRToolkit LASegmentation Graph Cuts (cli, bundled in Cardiac MRI Toolkit extension)

Greg Gardner

• CMRToolkit PVAntrum Cut (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Registration (scripted, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Registration BRAINSFit (scripted, bundled in Cardiac MRI Toolkit extension)
• LAScar Segmenter (cli, bundled in LAScar Segmenter extension)

Greg Harris

• BRAINSDemon Warp (cli, built-in)
• BRAINSResample (cli, built-in)
• VBRAINSDemon Warp (cli, built-in)

Gregory Sharp

• Dicom Sro Export (scripted, bundled in Slicer RT extension)
• Plm Register (scripted, bundled in Slicer RT extension)

Guido Gerig

• dtitractstat (cli, bundled in DTIAtlas Fiber Analyzer extension)
• Extract Skeleton (cli, built-in)

Guillaume Pernelle

• i Gyne (scripted, bundled in i Gyne extension)
• Needle Finder (scripted, bundled in Needle Finder extension)

Guillermo Carbajal

• d Pet Brain Quantification (scripted, bundled in Pet Spect Analysis extension)

H

• Dicom Rt Import Export Plugin

Hans J. Johnson

• BRAINSDemon Warp (cli, built-in)
• BRAINSFit (cli, built-in)
• BRAINSROIAuto (cli, built-in)
• BRAINSTransform Convert (cli, built-in)
• VBRAINSDemon Warp (cli, built-in)

Hans Johnson

• BRAINSResample (cli, built-in)
• BRAINSResize (cli, built-in)
• Cardiac Agatston Measures (scripted, bundled in Cardiac Agaston Measures extension)
• DWIConvert (cli, built-in)
• PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
• SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
• UKFTractography (cli, bundled in UKFTractography extension)

hans-johnson -at- uiowa.edu

• BRAINSFit (cli, built-in)
• BRAINSROIAuto (cli, built-in)

http://www.psychiatry.uiowa.edu

• BRAINSFit (cli, built-in)
• BRAINSROIAuto (cli, built-in)

i

• Dicom Rt Import Export Plugin

Ipek Oguz

• Convert VTK (cli, bundled in UKFTractography extension)
• Mesh To Label Map (cli, bundled in Mesh To Label Map extension)
• UKFTractography (cli, bundled in UKFTractography extension)

Ivan Kolesov

• Carrera Slice (loadable, bundled in Carrera Slice extension)
• Carrera Slice Effect (scripted, bundled in Carrera Slice extension)
• Fast Grow Cut Effect (scripted, bundled in Fast Grow Cut Effect extension)

Jaime Garcia Guevara

• Breach Warning (loadable, bundled in Slicer IGT extension)
• Markups To Model (loadable, bundled in Slicer IGT extension)

Jaime Garcia-Guevara

• Watchdog (loadable, bundled in Slicer IGT extension)

Jan Egger

• i Gyne (scripted, bundled in i Gyne extension)

Jayashree Kalpathy-Cramer

• T1 Mapping (scripted, bundled in T1 Mapping extension)

Jayender Jagadeesan

• Heterogeneity CAD (scripted, bundled in Open CAD extension)
• Segment CAD (scripted, bundled in Open CAD extension)
• Tracker Stabilizer (loadable, bundled in Tracker Stabilizer extension)

Jean-Baptiste Berger

• Data Store (loadable, built-in)
• DTIAtlas Fiber Analyzer (cli, bundled in DTIAtlas Fiber Analyzer extension)
• Fiber Compare (cli, bundled in DTIAtlas Fiber Analyzer extension)
• Merge Stat With Fiber (cli, bundled in DTIAtlas Fiber Analyzer extension)

Jean-Christophe Fillion-Robin

• CLI4Test
• Data Store (loadable, built-in)
• DTINot Reproducible Issue3977
• Extension Stats (scripted, bundled in Developer Tools For Extensions extension)
• Fast Grow Cut (loadable, bundled in Fast Grow Cut Effect extension)
• Fast Grow Cut Segmenter (loadable, bundled in Carrera Slice extension)
• fiber visibility crash2438
• Matlab Commander (cli, bundled in Matlab Bridge extension)
• Matlab Module Generator (loadable, bundled in Matlab Bridge extension)
• Multi Volume Explorer (loadable, built-in)
• Multi Volume Importer (scripted, built-in)
• Sample Data (scripted, built-in)
• Simple Filters (scripted, built-in)
• Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)
• Transforms (loadable, built-in)
• View Controllers (loadable, built-in)
• Welcome (loadable, built-in)

Jennifer Andrea

• Gel Dosimetry Analysis (scripted, bundled in Gel Dosimetry Analysis extension)
• Vff File Reader (loadable, bundled in Slicer RT extension)

Jessica Forbes

• Cardiac Agatston Measures (scripted, bundled in Cardiac Agaston Measures extension)

Jessica Lee

• UKFTractography (cli, bundled in UKFTractography extension)

Jim Miller

• Charting (scripted, built-in)
• Pk Modeling (cli, bundled in Pk Modeling extension)
• Simple Region Growing Segmentation (cli, built-in)
• Slice Link Logic (scripted, built-in)
• Slicer4Minute (scripted, built-in)
• View Controllers (loadable, built-in)
• View Controllers Slice Interpolation Bug1926

Johan Andruejol

• Units (loadable, built-in)

John Buatti

• PETIndi C (scripted, bundled in PET-Indi C extension)
• Quantitative Indices CLI (cli, bundled in PET-Indi C extension)
• Quantitative Indices Tool (scripted, bundled in PET-Indi C extension)
• SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)

John Evans

• Pk Modeling (cli, bundled in Pk Modeling extension)

Jonathan Bronson

• Cleaver CLI (cli, bundled in Cleaver Extension extension)

Jorge Onieva

• CIP Body Composition (scripted, bundled in Chest Imaging Platform extension)
• CIP Common (scripted, bundled in Chest Imaging Platform extension)
• CIP Get Image (scripted, bundled in Chest Imaging Platform extension)
• Picasa Snap (scripted, bundled in Chest Imaging Platform extension)

Josh Cates

• CMRToolkit Automatic Left Atrial Scar (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Axial Dilate (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Boolean REMOVEFilter (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Connected Threshold Filter (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Inhomogeneity Correction (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Isolated Connected Filter (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit LASegmentation Graph Cuts (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit PVAntrum Cut (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Registration (scripted, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Registration BRAINSFit (scripted, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Wizard (scripted, bundled in Cardiac MRI Toolkit extension)
• Label Map Smoothing (cli, built-in)
• LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
• LASegmentation Workflow (scripted, bundled in Cardiac MRI Toolkit extension)
• Scar Visualization (scripted, bundled in Cardiac MRI Toolkit extension)

Joy Matsui

• DWIConvert (cli, built-in)

Juan Carlos Prieto

• Angle Planes (scripted, bundled in Angle Planes Extension extension)

Julia Lopinto

• Angle Planes (scripted, bundled in Angle Planes Extension extension)
• Easy Clip (scripted, bundled in Easy Clip extension)

Julien Finet

• Cameras (loadable, built-in)
• Colors (loadable, built-in)
• Data (loadable, built-in)
• Double Arrays (loadable, built-in)
• Event Broker
• Image Maker (cli, bundled in Image Maker extension)
• Models (loadable, built-in)
• Multi Volume Explorer (loadable, built-in)
• Multi Volume Importer (scripted, built-in)
• Scene Performance (scripted, built-in)
• Threshold Scalar Volume (cli, built-in)
• Tractography Display (loadable, built-in)
• Transforms (loadable, built-in)
• Units (loadable, built-in)
• Volume Rendering (loadable, built-in)
• Volumes (loadable, built-in)

Julien Jomier

• Gaussian Blur Image Filter (cli, built-in)

Junichi Tokuda

• Corner Annotation (scripted, bundled in Corner Annotation extension)
• Curve Maker (scripted, bundled in Curve Maker extension)
• Light Weight Robot IGT (loadable, bundled in Light Weight Robot IGT extension)
• Path Explorer (loadable, bundled in Slicer IGT extension)
• Volume Reslice Driver (loadable, bundled in Slicer IGT extension)

K

• Dicom Rt Import Export Plugin

Kaci Carter

• Breach Warning Light (scripted, bundled in Lump Nav extension)

Kent Williams

• BRAINSDWICleanup (cli, built-in)
• BRAINSTransform Convert (cli, built-in)
• Convert VTK (cli, bundled in UKFTractography extension)
• DWIConvert (cli, built-in)
• UKFTractography (cli, bundled in UKFTractography extension)

Kent WIlliams

• BRAINSStrip Rotation (cli, built-in)

Kevin Alex

• Gel Dosimetry Analysis (scripted, bundled in Gel Dosimetry Analysis extension)

Kevin Wang

• Colors Scalar Bar Self Test
• Dicom Rt Import Export (loadable, bundled in Slicer RT extension)
• Dicom Sro Export (scripted, bundled in Slicer RT extension)
• Dicom Sro Import (loadable, bundled in Slicer RT extension)
• Dicom Sro Import Plugin
• Dose Accumulation (loadable, bundled in Slicer RT extension)
• Dose Comparison (loadable, bundled in Slicer RT extension)
• Dose Volume Histogram (loadable, bundled in Slicer RT extension)
• Isodose (loadable, bundled in Slicer RT extension)
• Matlab Commander (cli, bundled in Matlab Bridge extension)
• Matlab Module Generator (loadable, bundled in Matlab Bridge extension)
• Segment Comparison (loadable, bundled in Slicer RT extension)
• Segment Morphology (loadable, bundled in Slicer RT extension)
• Sequence Browser (loadable, bundled in Sequences extension)

Kilian M Pohl

• Island Removal (cli, built-in)

Kilian Pohl

• Annotations (loadable, built-in)
• Change Tracker (scripted, bundled in Change Tracker extension)
• EMSegment (loadable, built-in)
• EMSegment Command Line (cli, built-in)
• Scene Views (loadable, built-in)

Koichiro Murakami

• Corner Annotation (scripted, bundled in Corner Annotation extension)

Kyle Sunderl

• Dvh Comparison (scripted, bundled in Slicer RT extension)

L

• Dicom Rt Import Export Plugin

Lauren Barber

• i Gyne (scripted, bundled in i Gyne extension)
• Needle Finder (scripted, bundled in Needle Finder extension)

Lauren J. O'Donnell

• DTINot Reproducible Issue3977

Lauren O'Donnell

• Fiber Bundle Label Select (cli, built-in)
• Probe Volume With Model (cli, built-in)
• UKFTractography (cli, bundled in UKFTractography extension)

Laurent Chauvin

• Curve Maker (scripted, bundled in Curve Maker extension)
• Path Explorer (loadable, bundled in Slicer IGT extension)
• Tracker Stabilizer (loadable, bundled in Tracker Stabilizer extension)

Liangjia Zhu

• Carrera Slice Effect (scripted, bundled in Carrera Slice extension)
• Fast Grow Cut Effect (scripted, bundled in Fast Grow Cut Effect extension)
• LAScar Segmenter (cli, bundled in LAScar Segmenter extension)

Luca Antiga

• Centerline Computation (scripted, bundled in VMTK extension)
• Level Set Segmentation (scripted, bundled in VMTK extension)
• Surface Toolbox (scripted, built-in)
• Vesselness Filtering (scripted, bundled in VMTK extension)

Lucie Macron

• Mesh Statistics (scripted, bundled in Mesh Statistics Extension extension)
• Pick And Paint (scripted, bundled in Pick And Paint Extension extension)
• Q3DC (scripted, bundled in Q3DC extension)

Luping Fang

• Gyro Guide (scripted, bundled in Gyro Guide extension)

Marc Niethammer

• DWIRician LMMSEFilter (cli, built-in)

Marcel Prastawa marcel.prastawa@gmail.com

• ABC (cli, bundled in ABC extension)

Mark Scully

• DWIConvert (cli, built-in)

Markus Van Tol

• Longitudinal PETCT (loadable, bundled in Longitudinal PETCT extension)
• PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)

Markus van Tol

• PETIndi C (scripted, bundled in PET-Indi C extension)
• PETTumor Segmentation (loadable, bundled in PETTumor Segmentation extension)
• PETTumor Segmentation Effect (scripted, bundled in PETTumor Segmentation extension)
• Quantitative Indices CLI (cli, bundled in PET-Indi C extension)
• Quantitative Indices Tool (scripted, bundled in PET-Indi C extension)
• SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)

Martin Bertran

• d Pet Brain Quantification (scripted, bundled in Pet Spect Analysis extension)

Martin Styner

• Convert VTK (cli, bundled in UKFTractography extension)
• dtitractstat (cli, bundled in DTIAtlas Fiber Analyzer extension)
• Extract Skeleton (cli, built-in)
• UKFTractography (cli, bundled in UKFTractography extension)

Mason Winsauer

• Apply Matrix (cli, bundled in CMFreg extension)
• Downsize (cli, bundled in CMFreg extension)
• Growing (cli, bundled in CMFreg extension)
• Label Addition (cli, bundled in CMFreg extension)
• Label Extraction (cli, bundled in CMFreg extension)
• Mask Creation (cli, bundled in CMFreg extension)
• Non Growing (cli, bundled in CMFreg extension)

Matt Lougheed

• Volume Clip With Model (scripted, bundled in Volume Clip extension)

Mattea Welch

• Gel Dosimetry Analysis (scripted, bundled in Gel Dosimetry Analysis extension)

Matthew Holden

• Breach Warning (loadable, bundled in Slicer IGT extension)
• Fiducial Registration Wizard (loadable, bundled in Slicer IGT extension)
• Sequence Browser (loadable, bundled in Sequences extension)

Matthew Woehlke

• Extension Wizard (scripted, built-in)

Michael Jeulin-Lagarrigue

• Reformat (loadable, built-in)

n

• Dicom Rt Import Export Plugin

N

• Dicom Rt Import Export Plugin

Nabgha Fahrat

• i Gyne (scripted, bundled in i Gyne extension)
• Needle Finder (scripted, bundled in Needle Finder extension)

Natalia Martinez

• d Pet Brain Quantification (scripted, bundled in Pet Spect Analysis extension)

Neuro Image Resarch

• Apply Matrix (cli, bundled in CMFreg extension)
• Downsize (cli, bundled in CMFreg extension)
• Growing (cli, bundled in CMFreg extension)
• Label Addition (cli, bundled in CMFreg extension)
• Label Extraction (cli, bundled in CMFreg extension)
• Mask Creation (cli, bundled in CMFreg extension)
• Non Growing (cli, bundled in CMFreg extension)

Nicholas Herlambang

• JRC2013Vis

Nick Tustison

• N4ITKBias Field Correction (cli, built-in)

Nicole Aucoin

• ACPCTransform (cli, built-in)
• Add Many Markups Fiducial Test
• Add Storable Data After Scene View Test
• Annotations (loadable, built-in)
• Cast Scalar Volume (cli, built-in)
• Colors (loadable, built-in)
• Colors Scalar Bar Self Test
• Data (loadable, built-in)
• Fiducial Layout Switch Bug1914
• Grayscale Model Maker (cli, built-in)
• Markups (loadable, built-in)
• Markups In Compare Viewers Self Test
• Markups In Views Self Test
• Mask Scalar Volume (cli, built-in)
• Merge Models (cli, built-in)
• Model Maker (cli, built-in)
• Models (loadable, built-in)
• Model To Label Map (cli, built-in)
• Neurosurgical Planning Tutorial Markups Self Test
• PETStandard Uptake Value Computation (cli, built-in)
• PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
• Scene Views (loadable, built-in)
• Slicer MRBMultiple Save Restore Loop Test
• Slicer MRBMultiple Save Restore Test
• Slicer MRBSave Restore Check Paths Test
• SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
• Threshold Scalar Volume (cli, built-in)
• Volume Rendering Scene Close (scripted, built-in)
• Volumes (loadable, built-in)

Nikos Chrisochoides

• Body Centric Cubic Mesh (cli, bundled in CBC 3D I2MConversion extension)
• Mesh Compression (cli, bundled in CBC 3D I2MConversion extension)
• PBNRR (cli, bundled in PBNRR extension)

o

• Dicom Rt Import Export Plugin

Olivier Clatz

• PBNRR (cli, bundled in PBNRR extension)

P

• Dicom Rt Import Export Plugin

Paolo Zaffino

• Plastimatch Py (loadable, bundled in Slicer RT extension)

Pat Marion

• Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)

Patricio Vela

• Carrera Slice Effect (scripted, bundled in Carrera Slice extension)

Paul Mercea

• Longitudinal PETCT (loadable, bundled in Longitudinal PETCT extension)

Pengdong Xiao

• Intensity Segmenter (cli, bundled in Intensity Segmenter extension)

Peter Black

• Change Tracker (scripted, bundled in Change Tracker extension)

Peter Karasev

• Carrera Slice (loadable, bundled in Carrera Slice extension)
• Carrera Slice Effect (scripted, bundled in Carrera Slice extension)

Peter Savadjiev

• Finsler Backtracing (cli, bundled in Finsler Tractography extension)
• Finsler Tractography (cli, bundled in Finsler Tractography extension)
• UKFTractography (cli, bundled in UKFTractography extension)

Pierre Seroul

• Extract Skeleton (cli, built-in)

Pietro Nardelli

• Airway Segmentation (scripted, bundled in Airway Segmentation extension)
• Airway Segmentation CLI (cli, bundled in Airway Segmentation extension)
• Interactive Lobe Segmentation (scripted, bundled in Chest Imaging Platform extension)
• Region Type (loadable, bundled in Chest Imaging Platform extension)

Please direct questions or suggestions to http://groups.google.com/group/plastimatch

• plastimatch slicer bspline (cli, bundled in Slicer RT extension)
• plastimatch slicer landwarp (cli, bundled in Slicer RT extension)

Polina Goll

• EMSegment Command Line (cli, built-in)

Q

• Dicom Rt Import Export Plugin

Qing Pan

• Gyro Guide (scripted, bundled in Gyro Guide extension)

r

• Dicom Rt Import Export Plugin

Raul San Jose

• Diffusion Tensor Scalar Measurements (cli, built-in)
• DWITo DTIEstimation (cli, built-in)
• Tractography Label Map Seeding (cli, built-in)

Reinhard Beichel

• Quantitative Indices CLI (cli, bundled in PET-Indi C extension)
• Quantitative Indices Tool (scripted, bundled in PET-Indi C extension)
• SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)

Reinhard R. Beichel

• PETIndi C (scripted, bundled in PET-Indi C extension)

Rob MacLeod

• CMRToolkit Automatic Left Atrial Scar (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Axial Dilate (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Boolean REMOVEFilter (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Connected Threshold Filter (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Inhomogeneity Correction (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Isolated Connected Filter (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit LASegmentation Graph Cuts (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit PVAntrum Cut (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Registration (scripted, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Registration BRAINSFit (scripted, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Wizard (scripted, bundled in Cardiac MRI Toolkit extension)
• LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
• LASegmentation Workflow (scripted, bundled in Cardiac MRI Toolkit extension)
• Scar Visualization (scripted, bundled in Cardiac MRI Toolkit extension)

Ron Kikinis

• ACPCTransform (cli, built-in)
• Cast Scalar Volume (cli, built-in)
• Change Tracker (scripted, bundled in Change Tracker extension)
• Crop Volume (loadable, built-in)
• Fast Grow Cut Effect (scripted, bundled in Fast Grow Cut Effect extension)
• Mask Scalar Volume (cli, built-in)
• Merge Models (cli, built-in)
• Model Maker (cli, built-in)
• Multi Volume Explorer (loadable, built-in)
• Multi Volume Importer (scripted, built-in)
• N4ITKBias Field Correction (cli, built-in)
• PETStandard Uptake Value Computation (cli, built-in)
• PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
• Robust Statistics Segmenter (cli, built-in)
• Surface Toolbox (scripted, built-in)
• SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
• Threshold Scalar Volume (cli, built-in)
• View Controllers (loadable, built-in)
• Volume Rendering (loadable, built-in)

Ross Whitaker

• CMRToolkit LASegmentation Graph Cuts (cli, bundled in Cardiac MRI Toolkit extension)
• Label Map Smoothing (cli, built-in)

Ruifeng Chen

• Gyro Guide (scripted, bundled in Gyro Guide extension)

S

• i Gyne (scripted, bundled in i Gyne extension)
• Needle Finder (scripted, bundled in Needle Finder extension)

s

• Dicom Rt Import Export Plugin

Salma Bengali

• CMRToolkit Axial Dilate (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Boolean REMOVEFilter (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Connected Threshold Filter (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Isolated Connected Filter (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit LASegmentation Graph Cuts (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit PVAntrum Cut (cli, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Registration (scripted, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Registration BRAINSFit (scripted, bundled in Cardiac MRI Toolkit extension)
• CMRToolkit Wizard (scripted, bundled in Cardiac MRI Toolkit extension)
• LASegmentation Workflow (scripted, bundled in Cardiac MRI Toolkit extension)
• Scar Visualization (scripted, bundled in Cardiac MRI Toolkit extension)

Sam Song

• i Gyne (scripted, bundled in i Gyne extension)

Santiago Aja Fern

• DWIJoint Rician LMMSEFilter (cli, built-in)
• DWIRician LMMSEFilter (cli, built-in)
• DWIUnbiased Non Local Means Filter (cli, built-in)

Sebastian Tauscher

• Light Weight Robot IGT (loadable, bundled in Light Weight Robot IGT extension)

Sebastien Barré

• Cameras (loadable, built-in)

Sebastien Barre

• EMSegment Command Line (cli, built-in)

Shigeyuki Naka

• Corner Annotation (scripted, bundled in Corner Annotation extension)

Soichiro Tani

• Corner Annotation (scripted, bundled in Corner Annotation extension)

Sonia Pujol

• DTIexport (cli, built-in)
• DTIimport (cli, built-in)

Stefan Lienhard

• Convert VTK (cli, bundled in UKFTractography extension)
• UKFTractography (cli, bundled in UKFTractography extension)

Stephen Aylward

• Extract Skeleton (cli, built-in)
• Gaussian Blur Image Filter (cli, built-in)

Stephen R Aylward

• Expert Automated Registration (cli, built-in)

Steve Pieper

• Atlas Tests
• Carrera Slice Effect (scripted, bundled in Carrera Slice extension)
• Centerline Computation (scripted, bundled in VMTK extension)
• Compare Volumes (scripted, built-in)
• Data Probe (scripted, built-in)
• DICOM (scripted, built-in)
• DICOMDiffusion Volume Plugin
• DICOMLongitudinal PETCTPlugin
• DICOMScalar Volume Plugin
• DICOMSlicer Data Bundle Plugin
• Editor (scripted, built-in)
• Endoscopy (scripted, built-in)
• fiber visibility crash2438
• Fiber Bundle To Label Map (scripted, built-in)
• Label Statistics (scripted, built-in)
• Landmark Registration (scripted, built-in)
• Level Set Segmentation (scripted, bundled in VMTK extension)
• Multi Volume Explorer (loadable, built-in)
• Multi Volume Importer (scripted, built-in)
• Performance Tests
• PETTumor Segmentation Effect (scripted, bundled in PETTumor Segmentation extension)
• RSNA2012Prostate Demo
• RSNAQuant Tutorial
• RSNAVis Tutorial
• Sample Data (scripted, built-in)
• scene Import2428
• Self Tests
• Simple Filters (scripted, built-in)
• slicer Close Crash Bug2590
• Slicer MRBTest
• Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)
• Threshold Threading Test
• Vector To Scalar Volume (scripted, built-in)
• Vesselness Filtering (scripted, bundled in VMTK extension)
• View Controllers (loadable, built-in)
• Volumes (loadable, built-in)

Sylvain Gouttard

• dtitractstat (cli, bundled in DTIAtlas Fiber Analyzer extension)

T

• Dicom Rt Import Export Plugin

t

• Dicom Rt Import Export Plugin

Tamas Ungi

• Breach Warning (loadable, bundled in Slicer IGT extension)
• Breach Warning Self Test
• Collect Fiducials (loadable, bundled in Slicer IGT extension)
• Create Models (loadable, bundled in Slicer IGT extension)
• Fiducial Registration Wizard (loadable, bundled in Slicer IGT extension)
• Fiducials To Model Registration (scripted, bundled in Slicer IGT extension)
• Lump Nav (scripted, bundled in Lump Nav extension)
• Model Registration (scripted, bundled in Slicer IGT extension)
• Open IGTLink Remote (loadable, bundled in Slicer IGT extension)
• Pivot Calibration (loadable, bundled in Slicer IGT extension)
• Plus Remote (scripted, bundled in Slicer IGT extension)
• Scoliosis Monitoring (scripted, bundled in Scoliosis extension)
• Spinal Curvature Measurement (scripted, bundled in Scoliosis extension)
• Transform Fusion (loadable, bundled in Slicer IGT extension)
• Ultrasound Snapshots (loadable, bundled in Slicer IGT extension)
• Viewpoint (scripted, bundled in Lump Nav extension)
• Volume Reslice Driver (loadable, bundled in Slicer IGT extension)
• Watchdog (loadable, bundled in Slicer IGT extension)
• Watchdog Self Test

the University of North Carolina at Chapel Hill

• Intensity Segmenter (cli, bundled in Intensity Segmenter extension)

Thomas Lawson

• Wasp (scripted, bundled in Wasp extension)

Thomas Vaughan

• Viewpoint (scripted, bundled in Lump Nav extension)

Tina Kapur

• i Gyne (scripted, bundled in i Gyne extension)
• Needle Finder (scripted, bundled in Needle Finder extension)

Tobias Penzkofer

• i Gyne (scripted, bundled in i Gyne extension)

Tohru Tani

• Corner Annotation (scripted, bundled in Corner Annotation extension)

u

• Dicom Rt Import Export Plugin

U

• Dicom Rt Import Export Plugin

UNC Medical School

• Apply Matrix (cli, bundled in CMFreg extension)
• Downsize (cli, bundled in CMFreg extension)
• Growing (cli, bundled in CMFreg extension)
• Label Addition (cli, bundled in CMFreg extension)
• Label Extraction (cli, bundled in CMFreg extension)
• Mask Creation (cli, bundled in CMFreg extension)
• Non Growing (cli, bundled in CMFreg extension)

UofM School Of Dentistry

• Growing (cli, bundled in CMFreg extension)

UofM School of Dentistry

• Apply Matrix (cli, bundled in CMFreg extension)
• Downsize (cli, bundled in CMFreg extension)
• Label Addition (cli, bundled in CMFreg extension)
• Label Extraction (cli, bundled in CMFreg extension)
• Mask Creation (cli, bundled in CMFreg extension)
• Non Growing (cli, bundled in CMFreg extension)

v

• Dicom Rt Import Export Plugin

Vince Magnotta

• DWIConvert (cli, built-in)

Vincent A. Magnotta

• BRAINSLabel Stats (cli, built-in)

Vincent Magnotta

• BRAINSResample (cli, built-in)

Vinicius Boen

• Apply Matrix (cli, bundled in CMFreg extension)
• Downsize (cli, bundled in CMFreg extension)
• Growing (cli, bundled in CMFreg extension)
• Label Addition (cli, bundled in CMFreg extension)
• Label Extraction (cli, bundled in CMFreg extension)
• Mask Creation (cli, bundled in CMFreg extension)
• Non Growing (cli, bundled in CMFreg extension)
• Surface Registration (scripted, bundled in CMFreg extension)

Vivek Narayan

• Heterogeneity CAD (scripted, bundled in Open CAD extension)
• Segment CAD (scripted, bundled in Open CAD extension)

W

• Dicom Rt Import Export Plugin

Wendy Plesniak

• Annotations (loadable, built-in)
• PETStandard Uptake Value Computation (cli, built-in)
• PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
• Scene Views (loadable, built-in)
• SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
• View Controllers (loadable, built-in)
• Welcome (loadable, built-in)

Women's Hopsital

• Lung Registration (scripted, bundled in Chest Imaging Platform extension)

Women's Hospital

• CIP Body Composition (scripted, bundled in Chest Imaging Platform extension)
• CIP Common (scripted, bundled in Chest Imaging Platform extension)
• CIP Get Image (scripted, bundled in Chest Imaging Platform extension)
• Classify Fissure Particles (cli, bundled in Chest Imaging Platform extension)
• Compute Feature Strength (cli, bundled in Chest Imaging Platform extension)
• Compute Fissure Feature Vectors (cli, bundled in Chest Imaging Platform extension)
• Convert Dicom (cli, bundled in Chest Imaging Platform extension)
• Enhance Fissures In Image (cli, bundled in Chest Imaging Platform extension)
• Filter Airway Particle Data (cli, bundled in Chest Imaging Platform extension)
• Filter Fissure Particle Data (cli, bundled in Chest Imaging Platform extension)
• Filter Vessel Particle Data (cli, bundled in Chest Imaging Platform extension)
• Generate Lesion Segmentation (cli, bundled in Chest Imaging Platform extension)
• Generate Partial Lung Label Map (cli, bundled in Chest Imaging Platform extension)
• Generate Stenciled Label Map From Particles (cli, bundled in Chest Imaging Platform extension)
• Picasa Snap (scripted, bundled in Chest Imaging Platform extension)
• Read NRRDs Write VTK (cli, bundled in Chest Imaging Platform extension)
• Read Vida Write CIP (cli, bundled in Chest Imaging Platform extension)
• Read Write Region And Type Points (cli, bundled in Chest Imaging Platform extension)
• Remove Chest Type From Label Map Using Particles (cli, bundled in Chest Imaging Platform extension)
• Remove Particles From Particles Data Set (cli, bundled in Chest Imaging Platform extension)
• Segment Lung Lobes (cli, bundled in Chest Imaging Platform extension)
• Transfer Field Data To From Point Data (cli, bundled in Chest Imaging Platform extension)

women's hospital

• Compute Cross Sectional Area (cli, bundled in Chest Imaging Platform extension)
• Compute Distance Map (cli, bundled in Chest Imaging Platform extension)
• Compute Intensity Statistics (cli, bundled in Chest Imaging Platform extension)
• Convert Label Map Value To Chest Region Chest Type (cli, bundled in Chest Imaging Platform extension)
• Crop Lung (cli, bundled in Chest Imaging Platform extension)
• Evaluate Lung Lobe Segmentation Results (cli, bundled in Chest Imaging Platform extension)
• Extract Chest Label Map (cli, bundled in Chest Imaging Platform extension)
• Extract Particles From Chest Region Chest Type (cli, bundled in Chest Imaging Platform extension)
• Filter Connected Components (cli, bundled in Chest Imaging Platform extension)
• Fit Lobe Surface Models To Particle Data (cli, bundled in Chest Imaging Platform extension)
• Generate Atlas Convex Hull (cli, bundled in Chest Imaging Platform extension)
• Generate Distance Map From Label Map (cli, bundled in Chest Imaging Platform extension)
• Generate Image Sub Volumes (cli, bundled in Chest Imaging Platform extension)
• Generate Lobe Surface Models (cli, bundled in Chest Imaging Platform extension)
• Generate Median Filtered Image (cli, bundled in Chest Imaging Platform extension)
• Generate Otsu Lung Cast (cli, bundled in Chest Imaging Platform extension)
• Generate Region Histograms And Parenchyma Phenotypes (cli, bundled in Chest Imaging Platform extension)
• Get Structures In Label Map (cli, bundled in Chest Imaging Platform extension)
• Get Transformation Kappa (cli, bundled in Chest Imaging Platform extension)
• Get Transformation Kappa2D (cli, bundled in Chest Imaging Platform extension)
• Get Transformation Similarity Metric (cli, bundled in Chest Imaging Platform extension)
• Label Map From Region And Type Points (cli, bundled in Chest Imaging Platform extension)
• Label Particles By Chest Region Chest Type (cli, bundled in Chest Imaging Platform extension)
• Mask Out Label Map Structures (cli, bundled in Chest Imaging Platform extension)
• Merge Chest Label Maps (cli, bundled in Chest Imaging Platform extension)
• Merge Particle Data Sets (cli, bundled in Chest Imaging Platform extension)
• Perform Morphological (cli, bundled in Chest Imaging Platform extension)
• Perturb Particles (cli, bundled in Chest Imaging Platform extension)
• Read Dicom Write Tags (cli, bundled in Chest Imaging Platform extension)
• Read VTKWrite NRRDs (cli, bundled in Chest Imaging Platform extension)
• Read Write Image Data (cli, bundled in Chest Imaging Platform extension)
• Register CT (cli, bundled in Chest Imaging Platform extension)
• Register Label Maps (cli, bundled in Chest Imaging Platform extension)
• Register Lung Atlas (cli, bundled in Chest Imaging Platform extension)
• Remap Label Map (cli, bundled in Chest Imaging Platform extension)
• Resample CT (cli, bundled in Chest Imaging Platform extension)
• Resample Label Map (cli, bundled in Chest Imaging Platform extension)
• Rescale Label Map (cli, bundled in Chest Imaging Platform extension)
• Scour Particle Data (cli, bundled in Chest Imaging Platform extension)
• Split Left Lung Right Lung (cli, bundled in Chest Imaging Platform extension)

Women's hospital

• Convert Chest Region Chest Type To Label Map Value (cli, bundled in Chest Imaging Platform extension)
• Generate Binary Thinning3D (cli, bundled in Chest Imaging Platform extension)
• Generate NLMFiltered Image (cli, bundled in Chest Imaging Platform extension)
• Generate Overlay Images (cli, bundled in Chest Imaging Platform extension)
• Quality Control (cli, bundled in Chest Imaging Platform extension)

Xiao Da

• T1 Mapping (scripted, bundled in T1 Mapping extension)

Xiaodong Tao

• DWIConvert (cli, built-in)
• Model To Label Map (cli, built-in)
• Skull Stripper (cli, bundled in Skull Stripper extension)

Xiaojun Chen

• i Gyne (scripted, bundled in i Gyne extension)

y Wells

• i Gyne (scripted, bundled in i Gyne extension)
• Needle Finder (scripted, bundled in Needle Finder extension)

Yanling Liu

• Volume Rendering (loadable, built-in)

Yi Gao

• Carrera Slice Effect (scripted, bundled in Carrera Slice extension)
• Fast Grow Cut Effect (scripted, bundled in Fast Grow Cut Effect extension)
• i Gyne (scripted, bundled in i Gyne extension)
• LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
• Needle Finder (scripted, bundled in Needle Finder extension)
• Robust Statistics Segmenter (cli, built-in)

Yinglin Lee

• Test Grid Transform Registration (cli, built-in)

Yingxuan Zhu

• Pk Modeling (cli, bundled in Pk Modeling extension)

Yinpeng Li

• Convert VTK (cli, bundled in UKFTractography extension)
• UKFTractography (cli, bundled in UKFTractography extension)

Yixun Liu

• Body Centric Cubic Mesh (cli, bundled in CBC 3D I2MConversion extension)
• Mesh Compression (cli, bundled in CBC 3D I2MConversion extension)
• PBNRR (cli, bundled in PBNRR extension)

Yogesh Rathi

• Convert VTK (cli, bundled in UKFTractography extension)
• UKFTractography (cli, bundled in UKFTractography extension)

Yong Zhang

• Annotations (loadable, built-in)

Yumin Yuan

• EMSegment Command Line (cli, built-in)

Yundi Shi

• Convert VTK (cli, bundled in UKFTractography extension)
• dtitractstat (cli, bundled in DTIAtlas Fiber Analyzer extension)
• UKFTractography (cli, bundled in UKFTractography extension)