Difference between revisions of "Documentation/Nightly/ModuleExtensionListing"
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(This page has been updated using script slicer_wiki_extension_module_listing.py (rev ee4b87b). For more details: * https://github.com/Slicer/slicer-wiki-scripts * http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Developers/Build_) |
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<span id='Modules_by_category_Shape_Analysis'></span> | <span id='Modules_by_category_Shape_Analysis'></span> | ||
== Shape Analysis == | == Shape Analysis == | ||
| + | * [[Documentation/Nightly/Extensions/EasyClip|Easy Clip]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/EasyClip|Easy Clip]] extension)</small> | ||
* [[Documentation/Nightly/Extensions/MeshToLabelMap|Mesh To Label Map]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/MeshToLabelMap|Mesh To Label Map]] extension)</small> | * [[Documentation/Nightly/Extensions/MeshToLabelMap|Mesh To Label Map]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/MeshToLabelMap|Mesh To Label Map]] extension)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PickAndPaint Pick And Paint] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PickAndPaint Pick And Paint Extension] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PickAndPaint Pick And Paint] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PickAndPaint Pick And Paint Extension] extension)</small> | ||
| Line 611: | Line 612: | ||
* [[Documentation/Nightly/Extensions/XNATSlicer|Xnat Slicer]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/XNATSlicer|XNATSlicer]] extension)</small> | * [[Documentation/Nightly/Extensions/XNATSlicer|Xnat Slicer]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/XNATSlicer|XNATSlicer]] extension)</small> | ||
= Modules by name = | = Modules by name = | ||
| − | + | 296 modules: | |
* [[Documentation/Nightly/Modules/ACPCTransform|ACPCTransform]] <small>(cli, built-in)</small> | * [[Documentation/Nightly/Modules/ACPCTransform|ACPCTransform]] <small>(cli, built-in)</small> | ||
* [[Documentation/Nightly/Modules/AddScalarVolumes|Add Scalar Volumes]] <small>(cli, built-in)</small> | * [[Documentation/Nightly/Modules/AddScalarVolumes|Add Scalar Volumes]] <small>(cli, built-in)</small> | ||
| Line 695: | Line 696: | ||
* [[Documentation/Nightly/Modules/DWIToDTIEstimation|DWITo DTIEstimation]] <small>(cli, built-in)</small> | * [[Documentation/Nightly/Modules/DWIToDTIEstimation|DWITo DTIEstimation]] <small>(cli, built-in)</small> | ||
* [[Documentation/Nightly/Modules/DWModeling|DWModeling]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerProstate|Slicer Prostate]] extension)</small> | * [[Documentation/Nightly/Modules/DWModeling|DWModeling]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerProstate|Slicer Prostate]] extension)</small> | ||
| + | * [[Documentation/Nightly/Extensions/EasyClip|Easy Clip]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/EasyClip|Easy Clip]] extension)</small> | ||
* [[Documentation/Nightly/Modules/Editor|Editor]] <small>(scripted, built-in)</small> | * [[Documentation/Nightly/Modules/Editor|Editor]] <small>(scripted, built-in)</small> | ||
* [http://www.chestimagingplatform.org Emphysema Subtypes] <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small> | * [http://www.chestimagingplatform.org Emphysema Subtypes] <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small> | ||
Revision as of 14:05, 24 June 2015
Home < Documentation < Nightly < ModuleExtensionListing
- Modules by category
- Modules by name
- Modules by contributing organization
- Modules by contributing individual
- Modules by type
- Modules by extension
- Extensions by category
- Extensions by name
- Extensions by contributing organization
- Extensions by contributing individual
Modules by category
39 categories:
- BRAINS
- Cardiac MRI Toolkit
- Chest Imaging Platform
- CIP
- CMF Registration
- Converters
- Developer Tools
- Diffusion
- Editor Effect
- Endoscopy
- Examples
- Exporter
- File
- Filter
- Filtering
- IGT
- Informatics
- Legacy
- Mesh Generation
- Mesh Generation
- Microscopy
- Multi Volume Support
- Perk Tutor
- Plastimatch
- Quantification
- Radiotherapy
- Registration
- Segmentation
- Sequences
- Shape Analysis
- Slicelets
- Surface Models
- Testing
- Unspecified
- Utilities
- Vascular Modeling Toolkit
- Wizards
- Work in Progress
- XNATSlicer
BRAINS
LabelStatistics
- BRAINSLabel Stats (cli, built-in)
Cardiac MRI Toolkit
- CMRToolkit PVAntrum Cut (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Boolean REMOVEFilter (cli, bundled in Cardiac MRI Toolkit extension)
- LASegmentation Workflow (scripted, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Registration BRAINSFit (scripted, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Automatic Left Atrial Scar (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Connected Threshold Filter (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Wizard (scripted, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Isolated Connected Filter (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Inhomogeneity Correction (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Axial Dilate (cli, bundled in Cardiac MRI Toolkit extension)
- Scar Visualization (scripted, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Registration (scripted, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit LASegmentation Graph Cuts (cli, bundled in Cardiac MRI Toolkit extension)
Chest Imaging Platform
- Lung Registration (scripted, bundled in Chest Imaging Platform extension)
- Emphysema Subtypes (scripted, bundled in Chest Imaging Platform extension)
- Interactive Lobe Segmentation (scripted, bundled in Chest Imaging Platform extension)
- Parenchyma Analysis (scripted, bundled in Chest Imaging Platform extension)
Modules
- CIP Body Composition (scripted, bundled in Chest Imaging Platform extension)
- Picasa Snap (scripted, bundled in Chest Imaging Platform extension)
- CIP Get Image (scripted, bundled in Chest Imaging Platform extension)
Toolkit
Particles
- Scour Particle Data (cli, bundled in Chest Imaging Platform extension)
- Extract Particles From Chest Region Chest Type (cli, bundled in Chest Imaging Platform extension)
- Filter Vessel Particle Data (cli, bundled in Chest Imaging Platform extension)
- Remove Particles From Particles Data Set (cli, bundled in Chest Imaging Platform extension)
- Merge Particle Data Sets (cli, bundled in Chest Imaging Platform extension)
- Perturb Particles (cli, bundled in Chest Imaging Platform extension)
- Filter Airway Particle Data (cli, bundled in Chest Imaging Platform extension)
- Transfer Field Data To From Point Data (cli, bundled in Chest Imaging Platform extension)
- Fit Lobe Surface Models To Particle Data (cli, bundled in Chest Imaging Platform extension)
- Classify Fissure Particles (cli, bundled in Chest Imaging Platform extension)
- Generate Stenciled Label Map From Particles (cli, bundled in Chest Imaging Platform extension)
- Filter Fissure Particle Data (cli, bundled in Chest Imaging Platform extension)
Processing
- Rescale Label Map (cli, bundled in Chest Imaging Platform extension)
- Resample Label Map (cli, bundled in Chest Imaging Platform extension)
- Generate Median Filtered Image (cli, bundled in Chest Imaging Platform extension)
- Label Map From Region And Type Points (cli, bundled in Chest Imaging Platform extension)
- Crop Lung (cli, bundled in Chest Imaging Platform extension)
- Generate NLMFiltered Image (cli, bundled in Chest Imaging Platform extension)
- Compute Fissure Feature Vectors (cli, bundled in Chest Imaging Platform extension)
- Remove Chest Type From Label Map Using Particles (cli, bundled in Chest Imaging Platform extension)
- Generate Atlas Convex Hull (cli, bundled in Chest Imaging Platform extension)
- Generate Lobe Surface Models (cli, bundled in Chest Imaging Platform extension)
- Filter Connected Components (cli, bundled in Chest Imaging Platform extension)
- Extract Chest Label Map (cli, bundled in Chest Imaging Platform extension)
- Perform Morphological (cli, bundled in Chest Imaging Platform extension)
- Enhance Fissures In Image (cli, bundled in Chest Imaging Platform extension)
- Remap Label Map (cli, bundled in Chest Imaging Platform extension)
- Generate Distance Map From Label Map (cli, bundled in Chest Imaging Platform extension)
- Resample CT (cli, bundled in Chest Imaging Platform extension)
- Compute Feature Strength (cli, bundled in Chest Imaging Platform extension)
- Compute Distance Map (cli, bundled in Chest Imaging Platform extension)
- Quality Control (cli, bundled in Chest Imaging Platform extension)
- Generate Image Sub Volumes (cli, bundled in Chest Imaging Platform extension)
Quantification
- Evaluate Lung Lobe Segmentation Results (cli, bundled in Chest Imaging Platform extension)
- Get Transformation Kappa (cli, bundled in Chest Imaging Platform extension)
- Read Write Image Data (cli, bundled in Chest Imaging Platform extension)
- Compute Intensity Statistics (cli, bundled in Chest Imaging Platform extension)
- Compute Cross Sectional Area (cli, bundled in Chest Imaging Platform extension)
- Label Particles By Chest Region Chest Type (cli, bundled in Chest Imaging Platform extension)
- Get Transformation Similarity Metric (cli, bundled in Chest Imaging Platform extension)
- Generate Region Histograms And Parenchyma Phenotypes (cli, bundled in Chest Imaging Platform extension)
- Get Transformation Kappa2D (cli, bundled in Chest Imaging Platform extension)
Registration
- Register Lung Atlas (cli, bundled in Chest Imaging Platform extension)
- Register Label Maps (cli, bundled in Chest Imaging Platform extension)
- Register CT (cli, bundled in Chest Imaging Platform extension)
Segmentation
- Generate Otsu Lung Cast (cli, bundled in Chest Imaging Platform extension)
- Segment Lung Lobes (cli, bundled in Chest Imaging Platform extension)
- Generate Partial Lung Label Map (cli, bundled in Chest Imaging Platform extension)
- Split Left Lung Right Lung (cli, bundled in Chest Imaging Platform extension)
- Generate Lesion Segmentation (cli, bundled in Chest Imaging Platform extension)
- Generate Binary Thinning3D (cli, bundled in Chest Imaging Platform extension)
Utils
- Convert Dicom (cli, bundled in Chest Imaging Platform extension)
- Read VTKWrite NRRDs (cli, bundled in Chest Imaging Platform extension)
- Generate Overlay Images (cli, bundled in Chest Imaging Platform extension)
- Get Structures In Label Map (cli, bundled in Chest Imaging Platform extension)
- Convert Chest Region Chest Type To Label Map Value (cli, bundled in Chest Imaging Platform extension)
- Mask Out Label Map Structures (cli, bundled in Chest Imaging Platform extension)
- Read NRRDs Write VTK (cli, bundled in Chest Imaging Platform extension)
- Convert Label Map Value To Chest Region Chest Type (cli, bundled in Chest Imaging Platform extension)
- Read Write Region And Type Points (cli, bundled in Chest Imaging Platform extension)
- Merge Chest Label Maps (cli, bundled in Chest Imaging Platform extension)
- Read Vida Write CIP (cli, bundled in Chest Imaging Platform extension)
- Read Dicom Write Tags (cli, bundled in Chest Imaging Platform extension)
CIP
- CIP Common (scripted, bundled in Chest Imaging Platform extension)
CMF Registration
- Apply Matrix (cli, bundled in CMFreg extension)
- Label Extraction (cli, bundled in CMFreg extension)
- Label Addition (cli, bundled in CMFreg extension)
- Downsize (cli, bundled in CMFreg extension)
- Landmark Registration (scripted, bundled in CMFreg extension)
- Surface Registration (scripted, bundled in CMFreg extension)
Voxelbase Registration
- Growing (cli, bundled in CMFreg extension)
- Non Growing (cli, bundled in CMFreg extension)
- Mask Creation (cli, bundled in CMFreg extension)
Converters
- Quad Edge Surface Mesher (cli, bundled in Slicer Prostate extension)
- Crop Volume (loadable, built-in)
- Orient Scalar Volume (cli, built-in)
- Vector To Scalar Volume (scripted, built-in)
- Create DICOMSeries (cli, built-in)
- Particles Display (loadable, bundled in Chest Imaging Platform extension)
- Region Type (loadable, bundled in Chest Imaging Platform extension)
Developer Tools
- Cameras (loadable, built-in)
- Execution Model Tour (cli, built-in)
- Py Dev Remote Debug (scripted, bundled in Py Dev Remote Debug extension)
- Extension Wizard (scripted, built-in)
- Image Maker (cli, bundled in Image Maker extension)
- Developer Tools For Extensions (scripted, bundled in Developer Tools For Extensions extension)
- Event Broker
- Double Arrays (loadable, built-in)
DICOM Plugins
- DICOMSegmentation Plugin
- DICOMSlicer Data Bundle Plugin
- DICOMPETSUVPlugin
- DICOMDiffusion Volume Plugin
- DICOMLongitudinal PETCTPlugin
- Dicom Sro Import Plugin
- DICOMScalar Volume Plugin
- DICOMRWVMPlugin
- Dicom Rt Import Export Plugin
- Multi Volume Importer Plugin
Editor Extensions
- Fast Grow Cut Effect (scripted, bundled in Fast Grow Cut Effect extension)
- Carrera Slice Effect (scripted, bundled in Carrera Slice extension)
- PETTumor Segmentation Effect (scripted, bundled in PETTumor Segmentation extension)
- Binary Watershed Effect (scripted, bundled in IASEM extension)
- Double Threshold Effect (scripted, bundled in IASEM extension)
Matlab
- Matlab Module Generator (loadable, bundled in Matlab Bridge extension)
- Matlab Commander (cli, bundled in Matlab Bridge extension)
Diffusion
- Tractography Display (loadable, built-in)
- DICOM2Full Brain Tractography (scripted, built-in)
Diffusion Data Conversion
- DWIConvert (cli, built-in)
Diffusion Tensor Images
- Tractography Interactive Seeding (loadable, built-in)
- Tractography Label Map Seeding (cli, built-in)
- Resample DTIlog Euclidean (cli, bundled in Resample DTIlog Euclidean extension)
- Diffusion Tensor Scalar Measurements (cli, built-in)
- Resample DTIVolume (cli, built-in)
Diffusion Weighted Images
- DWIRician LMMSEFilter (cli, built-in)
- DWIJoint Rician LMMSEFilter (cli, built-in)
- Finsler Backtracing (cli, bundled in Finsler Tractography extension)
- Finsler Tractography (cli, bundled in Finsler Tractography extension)
- DWITo DTIEstimation (cli, built-in)
- Diffusion Weighted Volume Masking (cli, built-in)
- Resample Scalar Vector DWIVolume (cli, built-in)
FiberAnalysis
- Merge Stat With Fiber (cli, bundled in DTIAtlas Fiber Analyzer extension)
- Fiber Compare (cli, bundled in DTIAtlas Fiber Analyzer extension)
- dtitractstat (cli, bundled in DTIAtlas Fiber Analyzer extension)
- DTIAtlas Fiber Analyzer (cli, bundled in DTIAtlas Fiber Analyzer extension)
Tractography
- Fiber Bundle Label Select (cli, built-in)
- Fiber Bundle To Label Map (scripted, built-in)
- UKFTractography (cli, bundled in UKFTractography extension)
- Fiber Tract Measurements (cli, built-in)
EditorEffect
- PETTumor Segmentation (loadable, bundled in PETTumor Segmentation extension)
Endoscopy
- Endoscopy (scripted, built-in)
Examples
- Fast Grow Cut (loadable, bundled in Fast Grow Cut Effect extension)
- Fast Grow Cut Segmenter (loadable, bundled in Carrera Slice extension)
- Carrera Slice (loadable, bundled in Carrera Slice extension)
Exporter
- Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)
File
- Convert VTK (cli, bundled in UKFTractography extension)
Filter
- Island Removal (cli, built-in)
Filtering
- Segmentation Smoothing (cli, bundled in Slicer Prostate extension)
- N4ITKBias Field Correction (cli, built-in)
- Image Label Combine (cli, built-in)
- Voting Binary Hole Filling Image Filter (cli, built-in)
- Checker Board Filter (cli, built-in)
- Extract Skeleton (cli, built-in)
- Simple Filters (scripted, built-in)
- Threshold Scalar Volume (cli, built-in)
- Histogram Matching (cli, built-in)
Arithmetic
- Multiply Scalar Volumes (cli, built-in)
- Add Scalar Volumes (cli, built-in)
- Subtract Scalar Volumes (cli, built-in)
- Mask Scalar Volume (cli, built-in)
- Cast Scalar Volume (cli, built-in)
Denoising
- Curvature Anisotropic Diffusion (cli, built-in)
- Gradient Anisotropic Diffusion (cli, built-in)
- Median Image Filter (cli, built-in)
- Gaussian Blur Image Filter (cli, built-in)
Morphology
- Grayscale Fill Hole Image Filter (cli, built-in)
- Grayscale Grind Peak Image Filter (cli, built-in)
IGT
- Collect Fiducials (loadable, bundled in Slicer IGT extension)
- Transform Fusion (loadable, bundled in Slicer IGT extension)
- Gyro Guide (scripted, bundled in Gyro Guide extension)
- Light Weight Robot IGT (loadable, bundled in Light Weight Robot IGT extension)
- Create Models (loadable, bundled in Slicer IGT extension)
- Needle Finder (scripted, bundled in Needle Finder extension)
- Tracker Stabilizer (loadable, bundled in Tracker Stabilizer extension)
- Path Explorer (loadable, bundled in Slicer IGT extension)
- Ultrasound Snapshots (loadable, bundled in Slicer IGT extension)
- Breach Warning (loadable, bundled in Slicer IGT extension)
- Model Registration (scripted, bundled in Slicer IGT extension)
- Pivot Calibration (loadable, bundled in Slicer IGT extension)
- Volume Reslice Driver (loadable, bundled in Slicer IGT extension)
- Fiducial Registration Wizard (loadable, bundled in Slicer IGT extension)
- Open IGTLink Remote (loadable, bundled in Slicer IGT extension)
- Fiducials To Model Registration (scripted, bundled in Slicer IGT extension)
- Watchdog (loadable, bundled in Slicer IGT extension)
- Corner Annotation (scripted, bundled in Corner Annotation extension)
- Open IGTLink IF (loadable, built-in)
- i Gyne (scripted, bundled in i Gyne extension)
- Plus Remote (scripted, bundled in Slicer IGT extension)
- Markups To Model (loadable, bundled in Slicer IGT extension)
Informatics
- TCIABrowser (scripted, bundled in TCIABrowser extension)
- Data (loadable, built-in)
- Units (loadable, built-in)
- DICOM (scripted, built-in)
- Sample Data (scripted, built-in)
- Colors (loadable, built-in)
- Curve Maker (scripted, bundled in Curve Maker extension)
- Annotations (loadable, built-in)
- Markups (loadable, built-in)
- Subject Hierarchy (loadable, built-in)
Legacy
Converters
- BSpline To Deformation Field (cli, built-in)
Diffusion
Denoising
- DWIUnbiased Non Local Means Filter (cli, built-in)
Diffusion Data Conversion
- DTIexport (cli, built-in)
- DTIimport (cli, built-in)
Filtering
- Otsu Threshold Image Filter (cli, built-in)
- Resample Scalar Volume (cli, built-in)
Registration
- Test Grid Transform Registration (cli, built-in)
- Expert Automated Registration (cli, built-in)
Work in Progress
Diffusion Tensor
Test
- Diffusion Tensor Test (cli, built-in)
Mesh Generation
- Cleaver CLI (cli, bundled in Cleaver Extension extension)
MeshGeneration
- Body Centric Cubic Mesh (cli, bundled in CBC 3D I2MConversion extension)
- Mesh Compression (cli, bundled in CBC 3D I2MConversion extension)
Microscopy
- IASEMImport Series (cli, bundled in IASEM extension)
- IASEMImport (cli, bundled in IASEM extension)
- Bin Shrink (cli, bundled in IASEM extension)
- Label Object Statistics (scripted, bundled in IASEM extension)
- Spacing Aware Curvature Diffusion (cli, bundled in IASEM extension)
MultiVolume Support
- Multi Volume Importer (scripted, built-in)
- Multi Volume Explorer (loadable, built-in)
Perk Tutor
- Python Metrics Calculator (scripted, bundled in Perk Tutor extension)
- Transform Recorder (loadable, bundled in Perk Tutor extension)
- Perk Evaluator (loadable, bundled in Perk Tutor extension)
- Workflow Segmentation (loadable, bundled in Perk Tutor extension)
Plastimatch
- Dicom Sro Export (scripted, bundled in Slicer RT extension)
- Plm Register (scripted, bundled in Slicer RT extension)
Registration
- plastimatch slicer bspline (cli, bundled in Slicer RT extension)
- plastimatch slicer landwarp (cli, bundled in Slicer RT extension)
Utilities
- Plastimatch Py (loadable, bundled in Slicer RT extension)
Quantification
- PETIndi C (scripted, bundled in PET-Indi C extension)
- Heterogeneity CAD (scripted, bundled in Open CAD extension)
- T1 Mapping (scripted, bundled in T1 Mapping extension)
- Quantitative Indices CLI (cli, bundled in PET-Indi C extension)
- PETStandard Uptake Value Computation (cli, built-in)
- SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
- Spinal Curvature Measurement (scripted, bundled in Scoliosis extension)
- Quantitative Indices Tool (scripted, bundled in PET-Indi C extension)
- Label Statistics (scripted, built-in)
- DWModeling (cli, bundled in Slicer Prostate extension)
- Pk Modeling (cli, bundled in Pk Modeling extension)
- PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
- Data Probe (scripted, built-in)
- d Pet Brain Quantification (scripted, bundled in Pet Spect Analysis extension)
ChangeQuantification
- Intensity Difference Metric (cli, bundled in Change Tracker extension)
Radiotherapy
- Beams (loadable, bundled in Slicer RT extension)
- Dvh Comparison (scripted, bundled in Slicer RT extension)
- Isodose (loadable, bundled in Slicer RT extension)
- Dose Volume Histogram (loadable, bundled in Slicer RT extension)
- Dicom Rt Import Export (loadable, bundled in Slicer RT extension)
- Dose Accumulation (loadable, bundled in Slicer RT extension)
- Segment Comparison (loadable, bundled in Slicer RT extension)
- Planar Image (loadable, bundled in Slicer RT extension)
- Dose Comparison (loadable, bundled in Slicer RT extension)
- Segment Morphology (loadable, bundled in Slicer RT extension)
- Dicom Sro Import (loadable, bundled in Slicer RT extension)
Registration
- Transforms (loadable, built-in)
- BRAINSResize (cli, built-in)
- Perform Metric Test (cli, built-in)
- PBNRR (cli, bundled in PBNRR extension)
- BRAINSResample (cli, built-in)
- BRAINSFit (cli, built-in)
Label Registration
- Distance Map Based Registration (scripted, bundled in Slicer Prostate extension)
Specialized
- ACPCTransform (cli, built-in)
- Fiducial Registration (cli, built-in)
- BRAINSDemon Warp (cli, built-in)
- Reformat (loadable, built-in)
- VBRAINSDemon Warp (cli, built-in)
Segmentation
- EMSegment Quick (loadable, built-in)
- Volume Clip With Model (scripted, bundled in Volume Clip extension)
- Airway Segmentation CLI (cli, bundled in Airway Segmentation extension)
- LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
- Airway Segmentation (scripted, bundled in Airway Segmentation extension)
- Skull Stripper (cli, bundled in Skull Stripper extension)
- Volume Clip With Roi (scripted, bundled in Volume Clip extension)
- Segment CAD (scripted, bundled in Open CAD extension)
- Swiss Skull Stripper (cli, bundled in Swiss Skull Stripper extension)
- Wasp (scripted, bundled in Wasp extension)
- Editor (scripted, built-in)
- Simple Region Growing Segmentation (cli, built-in)
- EMSegment (loadable, built-in)
- Intensity Segmenter (cli, bundled in Intensity Segmenter extension)
Specialized
- BRAINSROIAuto (cli, built-in)
- Robust Statistics Segmenter (cli, built-in)
- EMSegment Command Line (cli, built-in)
Sequences
- Sequences (loadable, bundled in Sequences extension)
- Sequence Browser (loadable, bundled in Sequences extension)
- Metafile Importer (loadable, bundled in Sequences extension)
Shape Analysis
- Easy Clip (scripted, bundled in Easy Clip extension)
- Mesh To Label Map (cli, bundled in Mesh To Label Map extension)
- Pick And Paint (scripted, bundled in Pick And Paint Extension extension)
Slicelets
- Gel Dosimetry Analysis (scripted, bundled in Gel Dosimetry Analysis extension)
- Gel Dosimetry Analysis Algo (loadable, bundled in Gel Dosimetry Analysis extension)
Surface Models
- Surface Toolbox (scripted, built-in)
- Grayscale Model Maker (cli, built-in)
- Model Maker (cli, built-in)
- Model To Label Map (cli, built-in)
- Merge Models (cli, built-in)
- Probe Volume With Model (cli, built-in)
- Label Map Smoothing (cli, built-in)
Testing
- CLI4Test
- Threshold Threading Test
- Scoliosis Monitoring (scripted, bundled in Scoliosis extension)
- CLIROITest (cli, built-in)
- Performance Tests
- Slicer MRBTest
- Self Tests
IGT Tests
- Breach Warning Self Test
- Watchdog Self Test
SlicerRT Tests
- IGRTWorkflow Self Test
- Dicom Rt Import Self Test
- Batch Structure Set Conversion (scripted, bundled in Slicer RT extension)
TestCases
- Atlas Tests
- test tractography display
- RSNAQuant Tutorial
- Neurosurgical Planning Tutorial Markups Self Test
- Change Tracker Self Test
- Fiducial Layout Switch Bug1914
- Charting (scripted, built-in)
- Cardiac Agatston Measures (scripted, bundled in Cardiac Agatston Measures extension)
- fiber visibility crash2438
- RSNAVis Tutorial
- JRC2013Vis
- Add Many Markups Fiducial Test
- Slicer4Minute (scripted, built-in)
- Crop Volume Self Test
- Slice Link Logic (scripted, built-in)
- Volume Rendering Scene Close (scripted, built-in)
- slicer Close Crash Bug2590
- Markups In Views Self Test
- Subject Hierarchy Core Plugins Self Test
- Subject Hierarchy Generic Self Test
- Scene Performance (scripted, built-in)
- Markups In Compare Viewers Self Test
- scene Import2428
- RSNA2012Prostate Demo
- DTINot Reproducible Issue3977
- Colors Scalar Bar Self Test
- View Controllers Slice Interpolation Bug1926
Unspecified
- BRAINSDWICleanup (cli, built-in)
Utilities
- Data Store (loadable, built-in)
- BRAINSStrip Rotation (cli, built-in)
- EMSegment Transform To New Format (cli, built-in)
BRAINS
- BRAINSTransform Convert (cli, built-in)
Vascular Modeling Toolkit
- Centerline Computation (scripted, bundled in VMTK extension)
- Vesselness Filtering (scripted, bundled in VMTK extension)
- Level Set Segmentation (scripted, bundled in VMTK extension)
Wizards
- Compare Volumes (scripted, bundled in CMFreg extension)
- Change Tracker (scripted, bundled in Change Tracker extension)
Work in Progress
- Longitudinal PETCT (loadable, bundled in Longitudinal PETCT extension)
Converters
- Label To DICOMSEGConverter (scripted, bundled in Reporting extension)
Informatics
TestCases
- Label To DICOMSEGConverter Self Test
- Reporting Self Test
XNATSlicer
- Xnat Slicer (scripted, bundled in XNATSlicer extension)
Modules by name
296 modules:
- ACPCTransform (cli, built-in)
- Add Scalar Volumes (cli, built-in)
- Airway Segmentation (scripted, bundled in Airway Segmentation extension)
- Airway Segmentation CLI (cli, bundled in Airway Segmentation extension)
- Annotations (loadable, built-in)
- Apply Matrix (cli, bundled in CMFreg extension)
- Beams (loadable, bundled in Slicer RT extension)
- Bin Shrink (cli, bundled in IASEM extension)
- Body Centric Cubic Mesh (cli, bundled in CBC 3D I2MConversion extension)
- BRAINSDemon Warp (cli, built-in)
- BRAINSDWICleanup (cli, built-in)
- BRAINSFit (cli, built-in)
- BRAINSLabel Stats (cli, built-in)
- BRAINSResample (cli, built-in)
- BRAINSResize (cli, built-in)
- BRAINSROIAuto (cli, built-in)
- BRAINSStrip Rotation (cli, built-in)
- BRAINSTransform Convert (cli, built-in)
- Breach Warning (loadable, bundled in Slicer IGT extension)
- Carrera Slice (loadable, bundled in Carrera Slice extension)
- Cast Scalar Volume (cli, built-in)
- Centerline Computation (scripted, bundled in VMTK extension)
- Change Tracker (scripted, bundled in Change Tracker extension)
- Checker Board Filter (cli, built-in)
- CIP Body Composition (scripted, bundled in Chest Imaging Platform extension)
- CIP Common (scripted, bundled in Chest Imaging Platform extension)
- CIP Get Image (scripted, bundled in Chest Imaging Platform extension)
- Classify Fissure Particles (cli, bundled in Chest Imaging Platform extension)
- Cleaver CLI (cli, bundled in Cleaver Extension extension)
- CMRToolkit Automatic Left Atrial Scar (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Axial Dilate (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Boolean REMOVEFilter (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Connected Threshold Filter (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Inhomogeneity Correction (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Isolated Connected Filter (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit LASegmentation Graph Cuts (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit PVAntrum Cut (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Registration (scripted, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Registration BRAINSFit (scripted, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Wizard (scripted, bundled in Cardiac MRI Toolkit extension)
- Collect Fiducials (loadable, bundled in Slicer IGT extension)
- Colors (loadable, built-in)
- Compare Volumes (scripted, bundled in CMFreg extension)
- Compute Cross Sectional Area (cli, bundled in Chest Imaging Platform extension)
- Compute Distance Map (cli, bundled in Chest Imaging Platform extension)
- Compute Feature Strength (cli, bundled in Chest Imaging Platform extension)
- Compute Fissure Feature Vectors (cli, bundled in Chest Imaging Platform extension)
- Compute Intensity Statistics (cli, bundled in Chest Imaging Platform extension)
- Convert Chest Region Chest Type To Label Map Value (cli, bundled in Chest Imaging Platform extension)
- Convert Dicom (cli, bundled in Chest Imaging Platform extension)
- Convert Label Map Value To Chest Region Chest Type (cli, bundled in Chest Imaging Platform extension)
- Convert VTK (cli, bundled in UKFTractography extension)
- Corner Annotation (scripted, bundled in Corner Annotation extension)
- Create DICOMSeries (cli, built-in)
- Create Models (loadable, bundled in Slicer IGT extension)
- Crop Lung (cli, bundled in Chest Imaging Platform extension)
- Crop Volume (loadable, built-in)
- Curvature Anisotropic Diffusion (cli, built-in)
- Curve Maker (scripted, bundled in Curve Maker extension)
- Data (loadable, built-in)
- Data Probe (scripted, built-in)
- Data Store (loadable, built-in)
- DICOM (scripted, built-in)
- DICOM2Full Brain Tractography (scripted, built-in)
- Dicom Rt Import Export (loadable, bundled in Slicer RT extension)
- Dicom Sro Export (scripted, bundled in Slicer RT extension)
- Dicom Sro Import (loadable, bundled in Slicer RT extension)
- Diffusion Tensor Scalar Measurements (cli, built-in)
- Diffusion Weighted Volume Masking (cli, built-in)
- Distance Map Based Registration (scripted, bundled in Slicer Prostate extension)
- Dose Accumulation (loadable, bundled in Slicer RT extension)
- Dose Comparison (loadable, bundled in Slicer RT extension)
- Dose Volume Histogram (loadable, bundled in Slicer RT extension)
- Downsize (cli, bundled in CMFreg extension)
- d Pet Brain Quantification (scripted, bundled in Pet Spect Analysis extension)
- DTIAtlas Fiber Analyzer (cli, bundled in DTIAtlas Fiber Analyzer extension)
- dtitractstat (cli, bundled in DTIAtlas Fiber Analyzer extension)
- Dvh Comparison (scripted, bundled in Slicer RT extension)
- DWIConvert (cli, built-in)
- DWIJoint Rician LMMSEFilter (cli, built-in)
- DWIRician LMMSEFilter (cli, built-in)
- DWITo DTIEstimation (cli, built-in)
- DWModeling (cli, bundled in Slicer Prostate extension)
- Easy Clip (scripted, bundled in Easy Clip extension)
- Editor (scripted, built-in)
- Emphysema Subtypes (scripted, bundled in Chest Imaging Platform extension)
- EMSegment (loadable, built-in)
- EMSegment Command Line (cli, built-in)
- EMSegment Quick (loadable, built-in)
- EMSegment Transform To New Format (cli, built-in)
- Endoscopy (scripted, built-in)
- Enhance Fissures In Image (cli, bundled in Chest Imaging Platform extension)
- Evaluate Lung Lobe Segmentation Results (cli, bundled in Chest Imaging Platform extension)
- Extract Chest Label Map (cli, bundled in Chest Imaging Platform extension)
- Extract Particles From Chest Region Chest Type (cli, bundled in Chest Imaging Platform extension)
- Extract Skeleton (cli, built-in)
- Fast Grow Cut (loadable, bundled in Fast Grow Cut Effect extension)
- Fast Grow Cut Segmenter (loadable, bundled in Carrera Slice extension)
- Fiber Bundle Label Select (cli, built-in)
- Fiber Bundle To Label Map (scripted, built-in)
- Fiber Compare (cli, bundled in DTIAtlas Fiber Analyzer extension)
- Fiber Tract Measurements (cli, built-in)
- Fiducial Registration (cli, built-in)
- Fiducial Registration Wizard (loadable, bundled in Slicer IGT extension)
- Fiducials To Model Registration (scripted, bundled in Slicer IGT extension)
- Filter Airway Particle Data (cli, bundled in Chest Imaging Platform extension)
- Filter Connected Components (cli, bundled in Chest Imaging Platform extension)
- Filter Fissure Particle Data (cli, bundled in Chest Imaging Platform extension)
- Filter Vessel Particle Data (cli, bundled in Chest Imaging Platform extension)
- Finsler Backtracing (cli, bundled in Finsler Tractography extension)
- Finsler Tractography (cli, bundled in Finsler Tractography extension)
- Fit Lobe Surface Models To Particle Data (cli, bundled in Chest Imaging Platform extension)
- Gaussian Blur Image Filter (cli, built-in)
- Gel Dosimetry Analysis (scripted, bundled in Gel Dosimetry Analysis extension)
- Gel Dosimetry Analysis Algo (loadable, bundled in Gel Dosimetry Analysis extension)
- Generate Atlas Convex Hull (cli, bundled in Chest Imaging Platform extension)
- Generate Binary Thinning3D (cli, bundled in Chest Imaging Platform extension)
- Generate Distance Map From Label Map (cli, bundled in Chest Imaging Platform extension)
- Generate Image Sub Volumes (cli, bundled in Chest Imaging Platform extension)
- Generate Lesion Segmentation (cli, bundled in Chest Imaging Platform extension)
- Generate Lobe Surface Models (cli, bundled in Chest Imaging Platform extension)
- Generate Median Filtered Image (cli, bundled in Chest Imaging Platform extension)
- Generate NLMFiltered Image (cli, bundled in Chest Imaging Platform extension)
- Generate Otsu Lung Cast (cli, bundled in Chest Imaging Platform extension)
- Generate Overlay Images (cli, bundled in Chest Imaging Platform extension)
- Generate Partial Lung Label Map (cli, bundled in Chest Imaging Platform extension)
- Generate Region Histograms And Parenchyma Phenotypes (cli, bundled in Chest Imaging Platform extension)
- Generate Stenciled Label Map From Particles (cli, bundled in Chest Imaging Platform extension)
- Get Structures In Label Map (cli, bundled in Chest Imaging Platform extension)
- Get Transformation Kappa (cli, bundled in Chest Imaging Platform extension)
- Get Transformation Kappa2D (cli, bundled in Chest Imaging Platform extension)
- Get Transformation Similarity Metric (cli, bundled in Chest Imaging Platform extension)
- Gradient Anisotropic Diffusion (cli, built-in)
- Grayscale Fill Hole Image Filter (cli, built-in)
- Grayscale Grind Peak Image Filter (cli, built-in)
- Grayscale Model Maker (cli, built-in)
- Growing (cli, bundled in CMFreg extension)
- Gyro Guide (scripted, bundled in Gyro Guide extension)
- Heterogeneity CAD (scripted, bundled in Open CAD extension)
- Histogram Matching (cli, built-in)
- IASEMImport (cli, bundled in IASEM extension)
- IASEMImport Series (cli, bundled in IASEM extension)
- i Gyne (scripted, bundled in i Gyne extension)
- Image Label Combine (cli, built-in)
- Intensity Difference Metric (cli, bundled in Change Tracker extension)
- Intensity Segmenter (cli, bundled in Intensity Segmenter extension)
- Interactive Lobe Segmentation (scripted, bundled in Chest Imaging Platform extension)
- Island Removal (cli, built-in)
- Isodose (loadable, bundled in Slicer RT extension)
- KUtil (scripted, bundled in Carrera Slice extension)
- Label Addition (cli, bundled in CMFreg extension)
- Label Extraction (cli, bundled in CMFreg extension)
- Label Map From Region And Type Points (cli, bundled in Chest Imaging Platform extension)
- Label Map Smoothing (cli, built-in)
- Label Object Statistics (scripted, bundled in IASEM extension)
- Label Particles By Chest Region Chest Type (cli, bundled in Chest Imaging Platform extension)
- Label Statistics (scripted, built-in)
- Label To DICOMSEGConverter (scripted, bundled in Reporting extension)
- Landmark Registration (scripted, bundled in CMFreg extension)
- LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
- LASegmentation Workflow (scripted, bundled in Cardiac MRI Toolkit extension)
- Level Set Segmentation (scripted, bundled in VMTK extension)
- Light Weight Robot IGT (loadable, bundled in Light Weight Robot IGT extension)
- Longitudinal PETCT (loadable, bundled in Longitudinal PETCT extension)
- Lung Registration (scripted, bundled in Chest Imaging Platform extension)
- Markups (loadable, built-in)
- Markups To Model (loadable, bundled in Slicer IGT extension)
- Mask Creation (cli, bundled in CMFreg extension)
- Mask Out Label Map Structures (cli, bundled in Chest Imaging Platform extension)
- Mask Scalar Volume (cli, built-in)
- Median Image Filter (cli, built-in)
- Merge Chest Label Maps (cli, bundled in Chest Imaging Platform extension)
- Merge Models (cli, built-in)
- Merge Particle Data Sets (cli, bundled in Chest Imaging Platform extension)
- Merge Stat With Fiber (cli, bundled in DTIAtlas Fiber Analyzer extension)
- Mesh Compression (cli, bundled in CBC 3D I2MConversion extension)
- Mesh To Label Map (cli, bundled in Mesh To Label Map extension)
- Metafile Importer (loadable, bundled in Sequences extension)
- Model Maker (cli, built-in)
- Model Registration (scripted, bundled in Slicer IGT extension)
- Models (loadable, built-in)
- Model To Label Map (cli, built-in)
- Multiply Scalar Volumes (cli, built-in)
- Multi Volume Explorer (loadable, built-in)
- Multi Volume Importer (scripted, built-in)
- N4ITKBias Field Correction (cli, built-in)
- Needle Finder (scripted, bundled in Needle Finder extension)
- Non Growing (cli, bundled in CMFreg extension)
- Open IGTLink IF (loadable, built-in)
- Open IGTLink Remote (loadable, bundled in Slicer IGT extension)
- Orient Scalar Volume (cli, built-in)
- Parenchyma Analysis (scripted, bundled in Chest Imaging Platform extension)
- Particles Display (loadable, bundled in Chest Imaging Platform extension)
- Path Explorer (loadable, bundled in Slicer IGT extension)
- PBNRR (cli, bundled in PBNRR extension)
- Perform Metric Test (cli, built-in)
- Perform Morphological (cli, bundled in Chest Imaging Platform extension)
- Perk Evaluator (loadable, bundled in Perk Tutor extension)
- Perturb Particles (cli, bundled in Chest Imaging Platform extension)
- PETIndi C (scripted, bundled in PET-Indi C extension)
- PETStandard Uptake Value Computation (cli, built-in)
- PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
- PETTumor Segmentation (loadable, bundled in PETTumor Segmentation extension)
- Picasa Snap (scripted, bundled in Chest Imaging Platform extension)
- Pick And Paint (scripted, bundled in Pick And Paint Extension extension)
- Pivot Calibration (loadable, bundled in Slicer IGT extension)
- Pk Modeling (cli, bundled in Pk Modeling extension)
- Planar Image (loadable, bundled in Slicer RT extension)
- plastimatch slicer bspline (cli, bundled in Slicer RT extension)
- plastimatch slicer landwarp (cli, bundled in Slicer RT extension)
- Plastimatch Py (loadable, bundled in Slicer RT extension)
- Plm Register (scripted, bundled in Slicer RT extension)
- Plus Remote (scripted, bundled in Slicer IGT extension)
- Probe Volume With Model (cli, built-in)
- Python Metrics Calculator (scripted, bundled in Perk Tutor extension)
- Quad Edge Surface Mesher (cli, bundled in Slicer Prostate extension)
- Quality Control (cli, bundled in Chest Imaging Platform extension)
- Quantitative Indices CLI (cli, bundled in PET-Indi C extension)
- Quantitative Indices Tool (scripted, bundled in PET-Indi C extension)
- Read Dicom Write Tags (cli, bundled in Chest Imaging Platform extension)
- Read NRRDs Write VTK (cli, bundled in Chest Imaging Platform extension)
- Read Vida Write CIP (cli, bundled in Chest Imaging Platform extension)
- Read VTKWrite NRRDs (cli, bundled in Chest Imaging Platform extension)
- Read Write Image Data (cli, bundled in Chest Imaging Platform extension)
- Read Write Region And Type Points (cli, bundled in Chest Imaging Platform extension)
- Reformat (loadable, built-in)
- Region Type (loadable, bundled in Chest Imaging Platform extension)
- Register CT (cli, bundled in Chest Imaging Platform extension)
- Register Label Maps (cli, bundled in Chest Imaging Platform extension)
- Register Lung Atlas (cli, bundled in Chest Imaging Platform extension)
- Remap Label Map (cli, bundled in Chest Imaging Platform extension)
- Remove Chest Type From Label Map Using Particles (cli, bundled in Chest Imaging Platform extension)
- Remove Particles From Particles Data Set (cli, bundled in Chest Imaging Platform extension)
- Reporting (loadable, bundled in Reporting extension)
- Resample CT (cli, bundled in Chest Imaging Platform extension)
- Resample DTIlog Euclidean (cli, bundled in Resample DTIlog Euclidean extension)
- Resample DTIVolume (cli, built-in)
- Resample Label Map (cli, bundled in Chest Imaging Platform extension)
- Resample Scalar Vector DWIVolume (cli, built-in)
- Rescale Label Map (cli, bundled in Chest Imaging Platform extension)
- Robust Statistics Segmenter (cli, built-in)
- Sample Data (scripted, built-in)
- Scar Visualization (scripted, bundled in Cardiac MRI Toolkit extension)
- Scene Views (loadable, built-in)
- Scour Particle Data (cli, bundled in Chest Imaging Platform extension)
- Segmentations (loadable, bundled in Slicer RT extension)
- Segmentation Smoothing (cli, bundled in Slicer Prostate extension)
- Segment CAD (scripted, bundled in Open CAD extension)
- Segment Comparison (loadable, bundled in Slicer RT extension)
- Segment Lung Lobes (cli, bundled in Chest Imaging Platform extension)
- Segment Morphology (loadable, bundled in Slicer RT extension)
- Sequence Browser (loadable, bundled in Sequences extension)
- Sequences (loadable, bundled in Sequences extension)
- Simple Filters (scripted, built-in)
- Simple Region Growing Segmentation (cli, built-in)
- Skull Stripper (cli, bundled in Skull Stripper extension)
- Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)
- Spacing Aware Curvature Diffusion (cli, bundled in IASEM extension)
- Spinal Curvature Measurement (scripted, bundled in Scoliosis extension)
- Split Left Lung Right Lung (cli, bundled in Chest Imaging Platform extension)
- Subject Hierarchy (loadable, built-in)
- Subtract Scalar Volumes (cli, built-in)
- Surface Registration (scripted, bundled in CMFreg extension)
- Surface Toolbox (scripted, built-in)
- SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
- Swiss Skull Stripper (cli, bundled in Swiss Skull Stripper extension)
- T1 Mapping (scripted, bundled in T1 Mapping extension)
- TCIABrowser (scripted, bundled in TCIABrowser extension)
- Threshold Scalar Volume (cli, built-in)
- Tracker Stabilizer (loadable, bundled in Tracker Stabilizer extension)
- Tractography Display (loadable, built-in)
- Tractography Interactive Seeding (loadable, built-in)
- Tractography Label Map Seeding (cli, built-in)
- Transfer Field Data To From Point Data (cli, bundled in Chest Imaging Platform extension)
- Transform Fusion (loadable, bundled in Slicer IGT extension)
- Transform Recorder (loadable, bundled in Perk Tutor extension)
- Transforms (loadable, built-in)
- UKFTractography (cli, bundled in UKFTractography extension)
- Ultrasound Snapshots (loadable, bundled in Slicer IGT extension)
- Units (loadable, built-in)
- VBRAINSDemon Warp (cli, built-in)
- Vector To Scalar Volume (scripted, built-in)
- Vesselness Filtering (scripted, bundled in VMTK extension)
- Vff File Reader (loadable, bundled in Slicer RT extension)
- View Controllers (loadable, built-in)
- Volume Clip With Model (scripted, bundled in Volume Clip extension)
- Volume Clip With Roi (scripted, bundled in Volume Clip extension)
- Volume Rendering (loadable, built-in)
- Volume Reslice Driver (loadable, bundled in Slicer IGT extension)
- Volumes (loadable, built-in)
- Voting Binary Hole Filling Image Filter (cli, built-in)
- Wasp (scripted, bundled in Wasp extension)
- Watchdog (loadable, bundled in Slicer IGT extension)
- Welcome (loadable, built-in)
- Workflow Segmentation (loadable, bundled in Perk Tutor extension)
- Xnat Slicer (scripted, bundled in XNATSlicer extension)
