ExtractNrrdVectorIndex

Extract Nrrd Index

Extract Nrrd Index

User Interface

Output

Caption

General Information

Module Type & Category

Type: CLI

Category: Diffusion.GTRACT

Authors, Collaborators & Contact

Author: This tool was developed by Vincent Magnotta and Greg Harris.

Contributors:

Contact: name, email

Module Description

Program title	Extract Nrrd Index
Program description	This program will extract a 3D image (single vector) from a vector 3D image at a given vector index.
Program version	4.0.0
Program documentation-url	-

Usage

Use Cases, Examples

This module is especially appropriate for these use cases:

• Use Case 1:
• Use Case 2:

Examples of the module in use:

• Example 1:
• Example 2:

Tutorials

• Tutorial 1
  • Data Set 1

Quick Tour of Features and Use

A list panels in the interface, their features, what they mean, and how to use them.

Input Parameters Vector Image Volume [--inputVolume] : Required: input file containing the vector that will be extracted Index Into Vector Image [--vectorIndex] : Index in the vector image to extract Default value: 0 Index Into Vector Image [--setImageOrientation] : Sets the image orientation of the extracted vector (Axial, Coronal, Sagittal) Default value: AsAcquired Output File Output Volume [--outputVolume] : Required: name of output NRRD file containing the vector image at the given index

User Interface

Development

Notes from the Developer(s)

Algorithms used, library classes depended upon, use cases, etc.

Dependencies

Other modules or packages that are required for this module's use.

Tests

On the Dashboard, these tests verify that the module is working on various platforms:

• MyModuleTest1 MyModuleTest1.cxx
• MyModuleTest2 MyModuleTest2.cxx

Known bugs

Links to known bugs in the Slicer3 bug tracker

• Bug 000: description

Usability issues

Follow this link to the Slicer3 bug tracker. Please select the usability issue category when browsing or contributing.

Source code & documentation

Links to the module's source code:

Source code:

• file.cxx
• file.h

Doxygen documentation:

• class1

More Information

Acknowledgment

Funding for this version of the GTRACT program was provided by NIH/NINDS R01NS050568-01A2S1

References

Publications related to this module go here. Links to pdfs would be useful.