Documentation/Nightly/Extensions/ShapePopulationViewer

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Introduction and Acknowledgements

Author: Alexis Girault Contributors: Francois Budin (NIRAL, University of North Carolina), Beatriz Panaigua (NIRAL, University of North Carolina), Martin Styner (NIRAL, University of North Carolina), Laura Pascal (DCBIA-OrthoLab, UofM) Contact: Alexis Girault, <email>girault@email.unc.edu</email> Website: http://www.nitrc.org/projects/shapepopviewer License: Apache License, Version 2.0 Neuro Image Research and Analysis Laboratories (NIRAL) University of North Carolina at Chapel Hill (UNC) National Alliance for Medical Image Computing (NAMIC) University of Michigan at Ann Arbor (UofM)

Extension Description

• ShapePopulationViewer is an external tool that allows you to dynamically interact with multiple surfaces at the same time. It is very useful for visualisation and comparison of 3D surfaces by also displaying their scalars or vectors attributes (point data) and allowing the user to simply modify the colormap.

• You can launch ShapePopulationViewer without any input informations by directly clicking "Apply" in the Slicer CLI Module, or include Input/Configuration parameters :

ShapePopulationViewer - Slicer CLI Module

Parameters: vtkFiles [--vtkFiles] [-v]: VTK Input Files vtkDirectory [--directory] [-d]: Input Folder containing VTK files CSVFile [--csv] : CSV Input File containing VTK files path cameraConfig [--camera] [-c]: PVCC Camera Configuration File colormapConfig [--gradient] [-g]: SPVCM Colormap Configuration File

Use Cases

ShapePopulationViewer

Using display & view tools

File information

Attributes information

Colormap customization tool

Colormap applied on the Mapper

Vectors configuration tool

Vectors glyphs displayed on surface

Colormap by direction of a right condyle

Window for customize the color map by direction

Tutorials

• Tutorial Documentation : http://www.nitrc.org/docman/index.php?group_id=759

Information for Developers

• Project NITRC page : http://www.nitrc.org/projects/shapepopviewer
• GitHub Repository : https://github.com/NIRALUser/ShapePopulationViewer