Documentation/Nightly/Modules/SlicerModuleConnectedThreshold

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Introduction and Acknowledgements

Author: Umme Salma Bengali, CARMA Center, University of Utah Contributors: Alan Morris, Josh Cates, Rob MacLeod, CARMA Center, University of Utah Contacts: Umme Salma Bengali: <email>salma.bengali@carma.utah.edu</email>

The University of Utah Health Sciences

Module Description

This module uses a single seed point to segment an image. The seed point (fiducial) is placed within the region to be segmented. The upper and lower thresholds are entered by the user. The segmented region will contain pixels that are connected to this seed, and lie in between this range. Multiple seed points can be used.

Use Cases

This module is meant to be used for segmenting the entire endocardium region from a cardiac MRI or MRA image. It can also be used for segmentation of structures in other types of images.

Bottom Left:Segmentation overlaid on LGE-MRI image, Center: Segmentation output

Tutorials

Connected Threshold Filter Tutorial

Panels and their use

• Input image
• Output image
• Lower threshold
• Upper threshold
• Seed/s: User placed fiducial/s inside the region to be segmented

Similar Modules

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References

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Information for Developers

The source code for this module can be found at the CARMA GitHub repository.