Modules by name

156 modules:

ABC ABC
ACPCTransform builtin
Add Scalar Volumes builtin
Airway Segmentation CLI AirwaySegmentation
Annotations builtin
Apply Matrix CMFreg
Bin Shrink IASEM
Body Centric Cubic Mesh CBC_3D_I2MConversion
BRAINSDemon Warp builtin
BRAINSDWICleanup builtin
BRAINSFit builtin
BRAINSLabel Stats builtin
BRAINSResample builtin
BRAINSResize builtin
BRAINSROIAuto builtin
BRAINSTransform Convert builtin
Carrera Slice CarreraSlice
Cast Scalar Volume builtin
Change Tracker ChangeTracker
Checker Board Filter builtin
Cleaver CLI CleaverExtension
Colors builtin
Compare Volumes CMFreg
Corner Annotation CornerAnnotation
Create DICOMSeries builtin
Crop Volume builtin
Curvature Anisotropic Diffusion builtin
Curve Maker CurveMaker
Data builtin
Data Probe builtin
Data Store builtin
Dice Computation DiceComputation
DICOM builtin
DICOM2Full Brain Tractography builtin
Diffusion Tensor Scalar Measurements builtin
Diffusion Weighted Volume Masking builtin
Dilate Label ErodeDilateLabel
Downsize CMFreg
DWIConvert builtin
DWIJoint Rician LMMSEFilter builtin
DWIRician LMMSEFilter builtin
DWITo DTIEstimation builtin
Editor builtin
EMSegment builtin
EMSegment Command Line builtin
EMSegment Quick builtin
EMSegment Transform To New Format builtin
Endoscopy builtin
Erode Label ErodeDilateLabel
Extract Skeleton builtin
Fast Grow Cut FastGrowCutEffect
Fast Grow Cut Segmenter CarreraSlice
Fiber Bundle Label Select builtin
Fiber Bundle To Label Map builtin
Fiducial Registration builtin
Finsler Backtracing FinslerTractography
Finsler Tractography FinslerTractography
Gaussian Blur Image Filter builtin
Gel Dosimetry Analysis Algo GelDosimetryAnalysis
Gradient Anisotropic Diffusion builtin
Grayscale Fill Hole Image Filter builtin
Grayscale Grind Peak Image Filter builtin
Grayscale Model Maker builtin
Growing CMFreg
Gyro Guide GyroGuide
Histogram Matching builtin
IASEMImport IASEM
IASEMImport Series IASEM
IGR3D MABMIS Testing MABMIS
IGR3D MABMIS Training MABMIS
i Gyne iGyne
Image Label Combine builtin
Intensity Difference Metric ChangeTracker
Intensity Segmenter IntensitySegmenter
KUtil CarreraSlice
Label Addition CMFreg
Label Extraction CMFreg
Label Map Smoothing builtin
Label Object Statistics IASEM
Label Statistics builtin
Label To DICOMSEGConverter Reporting
Landmark Registration CMFreg
LAScar Segmenter LAScarSegmenter
Longitudinal PETCT LongitudinalPETCT
Markups builtin
Mask Creation CMFreg
Mask Scalar Volume builtin
Median Image Filter builtin
Merge Models builtin
Mesh Compression CBC_3D_I2MConversion
Metafile Importer MultidimData
Model Maker builtin
Models builtin
Model To Label Map builtin
Multiply Scalar Volumes builtin
Multi Volume Explorer builtin
Multi Volume Importer builtin
N4ITKBias Field Correction builtin
Needle Finder NeedleFinder
Non Growing CMFreg
Open IGTLink IF builtin
Orient Scalar Volume builtin
PBNRR PBNRR
Percutaneous Approach Analysis PercutaneousApproachAnalysis
Perform Metric Test builtin
Perk Evaluator PerkTutor
PETStandard Uptake Value Computation builtin
PETSUVImage Maker LongitudinalPETCT
Pk Modeling PkModeling
Port Placement PortPlacement
Probe Volume With Model builtin
Python Metrics Calculator PerkTutor
Reformat builtin
Reporting Reporting
Resample DTIVolume builtin
Resample Scalar Vector DWIVolume builtin
Robust Statistics Segmenter builtin
Sample Data builtin
Scene Views builtin
Segmentation Aided Registration SegmentationAidedRegistration
Sequence Browser MultidimData
Sequences MultidimData
Simple Filters builtin
Simple Region Growing Segmentation builtin
Slicer To Kiwi Exporter SlicerToKiwiExporter
Sobolev Segmenter SobolevSegmenter
Spacing Aware Curvature Diffusion IASEM
Spinal Curvature Measurement Scoliosis
Subject Hierarchy builtin
Subtract Scalar Volumes builtin
Surface Registration CMFreg
Surface Toolbox builtin
SUVFactor Calculator PETDICOMExtension
Swiss Skull Stripper SwissSkullStripper
TCIABrowser TCIABrowser
Thingiverse Browser ThingiverseBrowser
Threshold Scalar Volume builtin
Tracker Stabilizer TrackerStabilizer
Tractography Display builtin
Tractography Interactive Seeding builtin
Tractography Label Map Seeding builtin
Transform Recorder PerkTutor
Transforms builtin
Units builtin
VBRAINSDemon Warp builtin
Vector To Scalar Volume builtin
View Controllers builtin
Volume Clip With Model VolumeClip
Volume Clip With Roi VolumeClip
Volume Rendering builtin
Volumes builtin
Voting Binary Hole Filling Image Filter builtin
Welcome builtin
Window Level Effect WindowLevelEffect
Workflow Segmentation PerkTutor
Xnat Slicer XNATSlicer

Modules by category

30 categories:

BRAINS
- Label Statistics
CMF Registration
- Voxelbase Registration
Converters
Developer Tools
- DICOM Plugins
- Editor Extensions
- Matlab
Diffusion
- Diffusion Data Conversion
- Diffusion Tensor Images
- Diffusion Weighted Images
- Tractography
Editor Effects
Endoscopy
Examples
Exporter
Filtering
- Arithmetic
- Denoising
- Morphology
IGT
Informatics
Legacy
- Converters
- Diffusion
  - Denoising
  - Diffusion Data Conversion
- Filtering
- Registration
- Work in Progress
  - Diffusion Tensor
    - Test
Mesh Generation
Mesh Generation
Microscopy
Multidimensional data
Multi Volume Support
Perk Tutor
Quantification
- Change Quantification
Registration
- Specialized
Segmentation
- Specialized
Slicelets
Surface Models
Testing
- Test Cases
Unspecified
Utilities
- BRAINS
Wizards
Work in Progress
- Converters
- Informatics
  - Test Cases
XNATSlicer

BRAINS

LabelStatistics

BRAINSLabel Stats builtin

CMF Registration

Apply Matrix CMFreg Landmark Registration CMFreg Surface Registration CMFreg Label Extraction CMFreg Label Addition CMFreg Downsize CMFreg

Voxelbase Registration

Growing CMFreg Mask Creation CMFreg Non Growing CMFreg

Converters

Vector To Scalar Volume builtin Crop Volume builtin Create DICOMSeries builtin Orient Scalar Volume builtin

Developer Tools

Event Broker Double Arrays builtin Py Dev Remote Debug PyDevRemoteDebug Cameras builtin Extension Wizard builtin Execution Model Tour builtin Image Maker ImageMaker

DICOM Plugins

DICOMRWVMPlugin DICOMLongitudinal PETCTPlugin Multi Volume Importer Plugin DICOMPETSUVPlugin DICOMDiffusion Volume Plugin DICOMSegmentation Plugin DICOMScalar Volume Plugin DICOMSlicer Data Bundle Plugin

Editor Extensions

Binary Watershed Effect IASEM Fast Grow Cut Effect FastGrowCutEffect Carrera Slice Effect CarreraSlice Double Threshold Effect IASEM

Matlab

Matlab Module Generator MatlabBridge Matlab Commander MatlabBridge

Diffusion

Tractography Display builtin DICOM2Full Brain Tractography builtin

Diffusion Data Conversion

DWIConvert builtin

Diffusion Tensor Images

Resample DTIVolume builtin Diffusion Tensor Scalar Measurements builtin Tractography Label Map Seeding builtin Tractography Interactive Seeding builtin

Diffusion Weighted Images

DWIRician LMMSEFilter builtin DWIJoint Rician LMMSEFilter builtin DWITo DTIEstimation builtin Finsler Backtracing FinslerTractography Resample Scalar Vector DWIVolume builtin Finsler Tractography FinslerTractography Diffusion Weighted Volume Masking builtin

Tractography

Fiber Bundle To Label Map builtin Fiber Bundle Label Select builtin

Editor Effects

Window Level Effect WindowLevelEffect

Endoscopy

Endoscopy builtin

Examples

Carrera Slice CarreraSlice Fast Grow Cut FastGrowCutEffect Fast Grow Cut Segmenter CarreraSlice Segmentation Aided Registration SegmentationAidedRegistration

Exporter

Slicer To Kiwi Exporter SlicerToKiwiExporter

Filtering

Extract Skeleton builtin Threshold Scalar Volume builtin N4ITKBias Field Correction builtin Simple Filters builtin Image Label Combine builtin Voting Binary Hole Filling Image Filter builtin Histogram Matching builtin Checker Board Filter builtin

IGT

Percutaneous Approach Analysis PercutaneousApproachAnalysis Port Placement PortPlacement Open IGTLink IF builtin Needle Finder NeedleFinder Tracker Stabilizer TrackerStabilizer Gyro Guide GyroGuide i Gyne iGyne Corner Annotation CornerAnnotation

Informatics

Annotations builtin Markups builtin Units builtin DICOM builtin Sample Data builtin Subject Hierarchy builtin Data builtin Colors builtin Curve Maker CurveMaker TCIABrowser TCIABrowser

Legacy

Converters

BSpline To Deformation Field builtin

Diffusion

Denoising

DWIUnbiased Non Local Means Filter builtin

Diffusion Data Conversion

DTIimport builtin DTIexport builtin

Filtering

Otsu Threshold Image Filter builtin Resample Scalar Volume builtin

Registration

Test Grid Transform Registration builtin Expert Automated Registration builtin

Work in Progress

Diffusion Tensor

Test

Diffusion Tensor Test builtin

Mesh Generation

Cleaver CLI CleaverExtension

MeshGeneration

Body Centric Cubic Mesh CBC_3D_I2MConversion Mesh Compression CBC_3D_I2MConversion

Microscopy

Bin Shrink IASEM Label Object Statistics IASEM Spacing Aware Curvature Diffusion IASEM IASEMImport Series IASEM IASEMImport IASEM

Multidimensional data

Metafile Importer MultidimData Sequence Browser MultidimData Sequences MultidimData

MultiVolume Support

Multi Volume Explorer builtin Multi Volume Importer builtin

Perk Tutor

Python Metrics Calculator PerkTutor Workflow Segmentation PerkTutor Transform Recorder PerkTutor Perk Evaluator PerkTutor

Quantification

PETStandard Uptake Value Computation builtin SUVFactor Calculator PETDICOMExtension Spinal Curvature Measurement Scoliosis Pk Modeling PkModeling Label Statistics builtin PETSUVImage Maker LongitudinalPETCT Dice Computation DiceComputation Data Probe builtin

ChangeQuantification

Intensity Difference Metric ChangeTracker

Registration

BRAINSResample builtin Transforms builtin BRAINSResize builtin Perform Metric Test builtin BRAINSFit builtin PBNRR PBNRR

Specialized

ACPCTransform builtin Fiducial Registration builtin VBRAINSDemon Warp builtin BRAINSDemon Warp builtin Reformat builtin

Segmentation

Editor builtin EMSegment Quick builtin Simple Region Growing Segmentation builtin EMSegment builtin Volume Clip With Roi VolumeClip Swiss Skull Stripper SwissSkullStripper Airway Segmentation CLI AirwaySegmentation LAScar Segmenter LAScarSegmenter Sobolev Segmenter SobolevSegmenter Volume Clip With Model VolumeClip IGR3D MABMIS Testing MABMIS ABC ABC IGR3D MABMIS Training MABMIS Intensity Segmenter IntensitySegmenter

Specialized

EMSegment Command Line builtin Robust Statistics Segmenter builtin BRAINSROIAuto builtin

Slicelets

Gel Dosimetry Analysis Algo GelDosimetryAnalysis

Surface Models

Model To Label Map builtin Merge Models builtin Surface Toolbox builtin Probe Volume With Model builtin Grayscale Model Maker builtin Label Map Smoothing builtin Model Maker builtin

Testing

Self Tests CLIROITest builtin CLI4Test Threshold Threading Test Scoliosis Monitoring Scoliosis Performance Tests Slicer MRBTest

TestCases

Slice Link Logic builtin Atlas Tests RSNAQuant Tutorial Volume Rendering Scene Close builtin test tractography display Subject Hierarchy Core Plugins Self Test slicer Close Crash Bug2590 Subject Hierarchy Generic Self Test Charting builtin Scene Performance builtin Markups In Compare Viewers Self Test fiber visibility crash2438 scene Import2428 RSNAVis Tutorial JRC2013Vis RSNA2012Prostate Demo Add Many Markups Fiducial Test Neurosurgical Planning Tutorial Markups Self Test Colors Scalar Bar Self Test Markups In Views Self Test Change Tracker Self Test Fiducial Layout Switch Bug1914 View Controllers Slice Interpolation Bug1926 Slicer4Minute builtin label Toggle Bug2049