Difference between revisions of "Documentation/Nightly/Extensions/SlicerProstate"
(2 intermediate revisions by the same user not shown) | |||
Line 18: | Line 18: | ||
* [http://igtpg.spl.harvard.edu/ Enabling technologies for MRI-guided prostate interventions] (R01 CA111288, PI Tempany) | * [http://igtpg.spl.harvard.edu/ Enabling technologies for MRI-guided prostate interventions] (R01 CA111288, PI Tempany) | ||
* [http://ncigt.org/ The National Center for Image-Guided Therapy] (P41 EB015898, PI Tempany) | * [http://ncigt.org/ The National Center for Image-Guided Therapy] (P41 EB015898, PI Tempany) | ||
+ | * Advancement and Validation of Prostate Diffusion and Spectroscopic MRI (R01 CA160902, PI Maier) | ||
* [http://qiicr.org Quantitative Image Informatics for Cancer Research (QIICR)] (U24 CA180918, PIs Kikinis and Fedorov).<br> | * [http://qiicr.org Quantitative Image Informatics for Cancer Research (QIICR)] (U24 CA180918, PIs Kikinis and Fedorov).<br> | ||
− | Contributors: Andrey Fedorov ({{collaborator|name|spl}}), Andras Lasso (Queen's University)<br> | + | Contributors: Andrey Fedorov ({{collaborator|name|spl}}), Andras Lasso (Queen's University), Alireza Mehrtash (Brigham and Women's Hospital)<br> |
Contact: Andrey Fedorov, <email>fedorov@bwh.harvard.edu</email><br> | Contact: Andrey Fedorov, <email>fedorov@bwh.harvard.edu</email><br> | ||
Line 53: | Line 54: | ||
[2] Fedorov A, Nguyen PL, Tuncali K, Tempany C. (2015). Annotated MRI and ultrasound volume images of the prostate. Zenodo. http://doi.org/10.5281/zenodo.16396 | [2] Fedorov A, Nguyen PL, Tuncali K, Tempany C. (2015). Annotated MRI and ultrasound volume images of the prostate. Zenodo. http://doi.org/10.5281/zenodo.16396 | ||
+ | |||
+ | [3] Kobus T., Fedorov A., Tempany C.M., Mulkern R.V., Dunne R., Maier S.E. Bi-exponential Diffusion Analysis in Normal Prostate and Prostate Cancer: Transition Zone and Peripheral Zone Considerations. Proc. of ISMRM 2015. http://www.spl.harvard.edu/abstracts/item/view/168 | ||
<!-- ---------------------------- --> | <!-- ---------------------------- --> |
Latest revision as of 15:19, 19 May 2015
Home < Documentation < Nightly < Extensions < SlicerProstate
For the latest Slicer documentation, visit the read-the-docs. |
Introduction and Acknowledgements
|
Extension Description
SlicerProstate extension hosts various modules to facilitate
- processing and management of prostate image data
- utilizing prostate images in image-guided interventions
- development of the imaging biomarkers of the prostate cancer
While the main motivation for developing the functionality contained in this extension was prostate cancer imaging applications, they can also be applied in different contexts.
Modules
- Distance Map Based Registration: module that can be used for deformable registration between prostate gland segmentations in MR and TRUS
- Segmentation Smoothing: module to smooth the staircase aliasing effect commonly found in prostate segmentations done in typical MRI data
- QuadEdgeSurfaceMesher: module to reduce the number of triangles and smooth the surface recovered with the Marching Cubes algorithm
- DWModeling: module to fit commonly used models to Diffusion Weighted MRI of the prostate
References
[1] Fedorov A, Khallaghi S, Antonio Sánchez C, Lasso A, Fels S, Tuncali K, Neubauer Sugar E, Kapur T, Zhang C, Wells W, Nguyen PL, Abolmaesumi P, Tempany C. (2015) Open-source image registration for MRI–TRUS fusion-guided prostate interventions. Int J CARS: 1–10. Available: http://link.springer.com/article/10.1007/s11548-015-1180-7.
[2] Fedorov A, Nguyen PL, Tuncali K, Tempany C. (2015). Annotated MRI and ultrasound volume images of the prostate. Zenodo. http://doi.org/10.5281/zenodo.16396
[3] Kobus T., Fedorov A., Tempany C.M., Mulkern R.V., Dunne R., Maier S.E. Bi-exponential Diffusion Analysis in Normal Prostate and Prostate Cancer: Transition Zone and Peripheral Zone Considerations. Proc. of ISMRM 2015. http://www.spl.harvard.edu/abstracts/item/view/168
Information for Developers
- SlicerProstate organization page on github: https://github.com/SlicerProstate