Difference between revisions of "Documentation/4.3/Modules"
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*[[Documentation/{{documentation/version}}/Modules/SimpleRegionGrowingSegmentation|Simple Region Growing Segmentation]] (Jim Miller, Harini Veeraraghavan) | *[[Documentation/{{documentation/version}}/Modules/SimpleRegionGrowingSegmentation|Simple Region Growing Segmentation]] (Jim Miller, Harini Veeraraghavan) | ||
*[[Documentation/{{documentation/version}}/Modules/KSliceInteractiveSegmenter|KSlice Interactive Segmenter]] (Ivan Kolesov, Peter Karasev, Patricio Vela, Allen Tannenbaum, Karl Fritscher, Steve Pieper ) | *[[Documentation/{{documentation/version}}/Modules/KSliceInteractiveSegmenter|KSlice Interactive Segmenter]] (Ivan Kolesov, Peter Karasev, Patricio Vela, Allen Tannenbaum, Karl Fritscher, Steve Pieper ) | ||
| + | *[[Documentation/{{documentation/version}}/Modules/Editor|Editor]] (Steve Pieper) | ||
*Specialized | *Specialized | ||
**[[Documentation/{{documentation/version}}/Modules/EMSegment Command-line | EMSegment Command-line]] (Kilian Pohl) | **[[Documentation/{{documentation/version}}/Modules/EMSegment Command-line | EMSegment Command-line]] (Kilian Pohl) | ||
**[[Documentation/{{documentation/version}}/Modules/ForegroundMasking|Foreground Masking (BRAINS)]] (Hans Johnson) | **[[Documentation/{{documentation/version}}/Modules/ForegroundMasking|Foreground Masking (BRAINS)]] (Hans Johnson) | ||
**[[Documentation/{{documentation/version}}/Modules/RobustStatisticsSegmenter|Robust Statistics Segmenter]] (Yi Gao) | **[[Documentation/{{documentation/version}}/Modules/RobustStatisticsSegmenter|Robust Statistics Segmenter]] (Yi Gao) | ||
| − | **[[Documentation/{{documentation/version}}/Modules/LAScarSegmenter|Left Atrial Scar Segmenter]] ( | + | **[[Documentation/{{documentation/version}}/Modules/LAScarSegmenter|Left Atrial Scar Segmenter]] (Liangjia Zhu) |
| − | **[[Documentation/{{documentation/version}}/Modules/LASegmenter|Left Atrium Segmenter]] ( | + | **[[Documentation/{{documentation/version}}/Modules/LASegmenter|Left Atrium Segmenter]] (Liangjia Zhu) |
| + | **[[Documentation/{{documentation/version}}/Modules/FastGrowCut|Fast GrowCut Effect]] (Liangjia Zhu) | ||
| + | |||
==Quantification== | ==Quantification== | ||
*[[Documentation/{{documentation/version}}/Modules/DataProbe|Data Probe]] (Steve Pieper) | *[[Documentation/{{documentation/version}}/Modules/DataProbe|Data Probe]] (Steve Pieper) | ||
| Line 54: | Line 57: | ||
* Change quantification | * Change quantification | ||
** [[Documentation/{{documentation/version}}/Modules/IntensityDifferenceMetric|Intensity Difference Metric]] (Andrey Fedorov) | ** [[Documentation/{{documentation/version}}/Modules/IntensityDifferenceMetric|Intensity Difference Metric]] (Andrey Fedorov) | ||
| − | |||
==Diffusion== | ==Diffusion== | ||
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**[[Documentation/{{documentation/version}}/Modules/DiffusionTensorScalarMeasurements|Diffusion Tensor Scalar Measurements]] (Demian Wasserman) | **[[Documentation/{{documentation/version}}/Modules/DiffusionTensorScalarMeasurements|Diffusion Tensor Scalar Measurements]] (Demian Wasserman) | ||
**[[Documentation/{{documentation/version}}/Modules/DiffusionWeightedVolumeMasking|Diffusion Weighted Volume Masking]] (Demian Wasserman) {{wip}} | **[[Documentation/{{documentation/version}}/Modules/DiffusionWeightedVolumeMasking|Diffusion Weighted Volume Masking]] (Demian Wasserman) {{wip}} | ||
| + | **[[Documentation/{{documentation/version}}/Modules/FiberBundleLabelSelect|FiberBundleLabelSelect]] (Alex Yarmarkovich) {{wip}} | ||
**[[Documentation/{{documentation/version}}/Modules/ResampleDTIVolume|Resample DTI Volume]] (Demian Wasserman) {{wip}} | **[[Documentation/{{documentation/version}}/Modules/ResampleDTIVolume|Resample DTI Volume]] (Demian Wasserman) {{wip}} | ||
*Data Conversion | *Data Conversion | ||
Latest revision as of 17:22, 30 April 2014
Home < Documentation < 4.3 < Modules
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For the latest Slicer documentation, visit the read-the-docs. |
Contents
Modules by Category
Core Modules
- Annotations (Nicole Aucoin)
- Colors (Nicole Aucoin)
- Data (Julien Finet)
- DICOM (Steve Pieper)
- Editor (Steve Pieper)
- WatershedFromMarkers (Bradley Lowekamp)
- WatershedFromMarkers (Bradley Lowekamp)
- Markups (Nicole Aucoin)
- Models (Nicole Aucoin)
- SceneViews (Nicole Aucoin)
- Transforms (Alex Yarmarkovich)
- View Controllers (Jim Miller)
- Volumes (Steve Pieper)
- Volume Rendering (Julien Finet)
- Welcome to Slicer (Wendy Plesniak)
Wizards
Informatics
- Sample Data (Steve Pieper)
Registration
- Introduction to Registration (Dominik Meier)
- General Brainsfit Registration (Hans Johnson)
- Resample Image (BRAINS) (Hans Johnson)
- Specialized
- ACPC Transform (Nicole Aucoin)
- Demon Registration (BRAINS) (Hans Johnson)
- Fiducial Registration (Stephen Aylward)
- Vector Demon Registration (Hans Johnson)
- Reformat (Michael Jeulin-Lagarrigue)
- Segmentation Aided Registration (Yi Gao)
Segmentation
- EMSegment Easy (no atlas) (Kilian Pohl)
- EMSegment (with atlas) (Kilian Pohl)
- Simple Region Growing Segmentation (Jim Miller, Harini Veeraraghavan)
- KSlice Interactive Segmenter (Ivan Kolesov, Peter Karasev, Patricio Vela, Allen Tannenbaum, Karl Fritscher, Steve Pieper )
- Editor (Steve Pieper)
- Specialized
- EMSegment Command-line (Kilian Pohl)
- Foreground Masking (BRAINS) (Hans Johnson)
- Robust Statistics Segmenter (Yi Gao)
- Left Atrial Scar Segmenter (Liangjia Zhu)
- Left Atrium Segmenter (Liangjia Zhu)
- Fast GrowCut Effect (Liangjia Zhu)
Quantification
- Data Probe (Steve Pieper)
- Label Statistics (Steve Pieper)
- PET Standard Uptake Value Computation (Nicole Aucoin)
- Change quantification
- Intensity Difference Metric (Andrey Fedorov)
Diffusion
- DWI to Full Brain Tractography (Demian Wasserman)
- Denoising
- DWI Joint Rician LMMSE Image Filter (Demian Wasserman)
- DWI Rician LMMSE Filter (Demian Wasserman)
- DWI Joint Rician LMMSE Image Filter (Demian Wasserman)
- Tractography
- Tractography Display (Demian Wasserman)
- Tractography Interactive Seeding (Alex Yarmarkovich)
- Tractography Label Map Seeding (Demian Wasserman)
- UKF Tractography
- Tractography Display (Demian Wasserman)
- Utilities
- DWI To DTI Estimation (Demian Wasserman)
- Diffusion Tensor Scalar Measurements (Demian Wasserman)
- Diffusion Weighted Volume Masking (Demian Wasserman)
- FiberBundleLabelSelect (Alex Yarmarkovich)
- Resample DTI Volume (Demian Wasserman)
- DWI To DTI Estimation (Demian Wasserman)
- Data Conversion
- DTIImport (Sonia Pujol)
- DTIExport (Sonia Pujol)
- Fiber Bundle to Label Map (Steve Pieper)
- DTIImport
IGT
- OpenIGTLink IF (Junichi Tokuda)
Filtering
- N4ITK Bias Field Correction (Andrey Fedorov)
- CheckerBoard Filter (Jim Miller)
- Extract Skeleton (Jim Miller)
- Histogram Matching (Jim Miller)
- Image Label Combine (Alex Yarmarkovich)
- Resample Scalar/Vector/DWI Volume (Francois Budin)
- Threshold Scalar Volume (Nicole Aucoin)
- Voting Binary Hole Filling Image Filter (Jim Miller)
- Simple Filters (Bradley Lowekamp)
- Arithmetic
- Add Scalar Volumes (Jim Miller)
- Cast Scalar Volume (Nicole Aucoin)
- Mask Scalar Volume (Nicole Aucoin)
- Multiply Scalar Volumes (Jim Miller)
- Subtract Scalar Volumes (Jim Miller)
- Add Scalar Volumes (Jim Miller)
- Denoising
- Gradient Anisotropic Diffusion (Jim Miller)
- Curvature Anisotropic Diffusion (Jim Miller)
- Gaussian Blur Image Filter (Stephen Aylward)
- Median Image Filter (Jim Miller)
- Gradient Anisotropic Diffusion (Jim Miller)
- Morphology
- Grayscale Fill Hole Image Filter (Jim Miller)
- Grayscale Grind Peak Image Filter (Jim Miller)
Surface Models
- Grayscale Model Maker (Jim Miller)
- Label Map Smoothing
- Merge Models (Nicole Aucoin)
- Model Maker (Nicole Aucoin)
- Model To LabelMap (Nicole Aucoin)
- Probe Volume With Model (Lauren O'Donnell)
- SurfaceToolbox (Luca Antiga)
Converters
- Create DICOM Series (Jim Miller)
- Crop Volume (Andrey Fedorov)
- Dicom to Nrrd Converter (Jim Miller)
- Orient Scalar Volume (Jim Miller)
- Vector to Scalar Volume (Steve Pieper)
Endoscopy
- Endoscopy (Steve Pieper)
Work in Progress
- MultiVolume Support
- MultiVolume Importer (Andrey Fedorov)
- MultiVolume Explorer (Andrey Fedorov)
- Data Store (Charles Marion)
Developer Tools
- Cameras (Julien Finet)
- Event Broker (Julien Finet)
- Execution Model Tour (JC Fillion-Robin)
- Module Template (JC Fillion-Robin)
- Performance Tests
- Tractography
Legacy
- Converters
- Diffusion
- Denoising
- Filtering
- MRI Bias Field Correction (Sylvain Jaume)
- Otsu Threshold Image Filter (Bill Lorensen)
- Resample Scalar Volume (Jim Miller)
- MRI Bias Field Correction (Sylvain Jaume)
- Registration
- Rigid Registration (Jim Miller)
- Affine Registration (Daniel Blezek)
- BSpline Deformable Registration
- Expert Automated Registration
- Linear Registration
- MultiResolution Affine Registration (Casey Goodlett)
- Rigid Registration (Jim Miller)
- Segmentation
- Otsu Threshold Segmentation (Bill Lorensen)
- Otsu Threshold Segmentation (Bill Lorensen)
