Difference between revisions of "Documentation/4.2/Extensions/SlicerRT"

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[[File:LogoCco.png|Cancer Care Ontario]]
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[[File:Logo-SparKit.png|SparKit]]
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[[File:LogoOCAIRO.jpg|SparKit]]
 
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{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
 
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{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
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Authors: <b>Csaba Pinter</b> (PerkLab, Queen's University), <b>Andras Lasso</b> (PerkLab, Queen's University), <b>Kevin Wang</b> (Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto)<br>
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Contributors: Greg Sharp (Massachusetts General Hospital), Steve Pieper (Isomics)<br>
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This work is part of the SparKit project, funded by An Applied Cancer Research Unit of Cancer Care Ontario with funds provided by the Ministry of Health and Long-Term Care and the Ontario Consortium for Adaptive Interventions in Radiation Oncology (OCAIRO) to provide free, open-source toolset for radiotherapy and related image-guided interventions.<br>
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Contacts:
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Author: Kevin Wang (Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto)<br>
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* Andras Lasso, <email>lasso@cs.queensu.ca</email>
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Contact: Kevin Wang, <email>kevin.wang@rmp.uhn.on.ca</email><br>
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* Mailing list, <email>slicerrt@alerts.assembla.com</email> (need to register to [http://www.assembla.com Assembla] using the email address from which the email is sent)
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{{documentation/{{documentation/version}}/module-introduction-row}}
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* [https://www.assembla.com/spaces/slicerrt/wiki/How_to_report_an_error How to report an error]
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Website: [http://slicerrt.github.io slicerrt.org]<br>
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License: [http://www.slicer.org/pages/LicenseText Slicer license]
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{{documentation/{{documentation/version}}/extension-section|Extension Description}}
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The {{documentation/modulename}} module creates isosurfaces from an input dose volume and a series of defined isodose levels. The output is a series of surface models grouped under a hierarchy node parent that can be visualized either in the 3D viewer or overlaid on image slices.
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{|
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[[Image:SlicerRT_Logo_2.0_128x128.png]]
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SlicerRT is one of the themes of the SparKit (Software Platform and Adaptive Radiotherapy Kit) project with the goal of making 3D Slicer a powerful radiotherapy research platform.
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SparKit is a project funded by Cancer Care Ontarioand the Ontario Consortium for Adaptive Interventions in Radiation Oncology (OCAIRO) to provide free, open-source toolset for radiotherapy and related image-guided interventions.
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The SlicerRT extension incorporates [[Documentation/{{documentation/version}}/Extensions/Plastimatch|Plastimatch]] modules and algorithms.
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*[[Documentation/{{documentation/version}}/Modules/DicomRtImport|DICOM-RT import]]
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|[[File:SlicerRT0.4 Screenshot Isodose.png|thumb|800px| Contours module GUI]]
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*[[Documentation/{{documentation/version}}/Modules/Contours|Contours]]
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*[[Documentation/{{documentation/version}}/Modules/DoseVolumeHistogram|Dose volume histogram]]
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*[[Documentation/{{documentation/version}}/Modules/DoseAccumulation|Dose accumulation]]
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*[[Documentation/{{documentation/version}}/Modules/DoseComparison|Dose comparison]]
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*[[Documentation/{{documentation/version}}/Modules/Isodose|Isodose line and surface display]]
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*[[Documentation/{{documentation/version}}/Modules/ContourComparison|Contour comparison]]
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*[[Documentation/{{documentation/version}}/Modules/ContourMorphology|Contour morphology]]
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*[[Documentation/{{documentation/version}}/Modules/DeformationFieldVisualizer|Transform visualizer (moved to separate extension)]]
  
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* Modules from [[Documentation/{{documentation/version}}/Extensions/Plastimatch|Plastimatch]] (Greg Sharp)
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**[[Documentation/{{documentation/version}}/Modules/PlmBSplineDeformableRegistration|Plastimatch Automatic deformable image registration]] (Greg Sharp)
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N/A
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**[[Documentation/{{documentation/version}}/Modules/PlmDICOMRTImport|Plastimatch DICOM-RT import]] (Greg Sharp)
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**[[Documentation/{{documentation/version}}/Modules/PlmDICOMRTExport|Plastimatch DICOM-RT export]] (Greg Sharp)[[image:UnderConstruction.png|tumb|10px]]
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**[[Documentation/{{documentation/version}}/Modules/PlmLANDWARP|Plastimatch LANDWARP Landmark]] (Greg Sharp)
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**[[Documentation/{{documentation/version}}/Modules/PlmXFORMWARP|Plastimatch XFORMWARP]] (Greg Sharp)[[image:UnderConstruction.png|tumb|10px]]
  
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Important note: BSpline Deformable registration and LANDWARP modules do not show up for Slicer 4.2 on Mac
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{{documentation/{{documentation/version}}/module-section|Panels and their use}}
 
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* Input
 
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** Dose volume
 
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** Number of Iso levels
 
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** Iso levels table: color, label and opacity can be set to the isodose surfaces individually
 
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** Apply: Create isodose surfaces
 
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* Display options
 
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** Show isodose lines: Show/hide isodose lines in 2D slice viewers
 
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** Show isodose surfaces: Show/hide isodose surfaces in the 3D view
 
 
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**[[Documentation/{{documentation/version}}/Modules/PlmDoseComparison|Plastimatch Dose Comparison]] (Greg Sharp)[[image:UnderConstruction.png|tumb|10px]]
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**[[Documentation/{{documentation/version}}/Modules/PlmDoseVolumeHistogram|Plastimatch Dose Volume Histogram]] (Greg Sharp)[[image:UnderConstruction.png|tumb|10px]]
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**[[Documentation/{{documentation/version}}/Modules/PlmSyntheticImageGeneration|Plastimatch Synthetic Image Generation]] (Greg Sharp)[[image:UnderConstruction.png|tumb|10px]]
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**[[Documentation/{{documentation/version}}/Modules/PlmThreshBox|Plastimatch Threshold in a box]] (Greg Sharp)[[image:UnderConstruction.png|tumb|10px]]
 
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{{documentation/{{documentation/version}}/extension-section|Use Cases}}
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N/A
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* Comparison of dose maps and dose volume histograms from various treatment planning systems
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* Evaluation of the effect of image-based non-rigid patient motion compensation
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* Dose accumulation with motion compensation
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{|align="center"
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|[[File:SlicerRT_0.10_Montage.png|1362px|SlicerRT highlights]]
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|}
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{{documentation/{{documentation/version}}/extension-section|Tutorials}}
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* Summer NA-MIC week 2013 tutorial
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** Tutorial presentation: [http://wiki.na-mic.org/Wiki/images/b/b0/SlicerRT_TutorialContestSummer2013.pdf download] from Slicer wiki
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** Sample data: [http://slicer.kitware.com/midas3/download/folder/1345/SlicerRtTutorial_Namic2013June.zip download] from MIDAS
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* ECR 2013 - Medical University Vienna workshop
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** Workshop material: [http://www.na-mic.org/Wiki/index.php/File:Pinter_MedUni2013_Workshop.pdf download] from NA-MIC.org
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* RSNA 2012 tutorial
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** Tutorial description: [https://www.assembla.com/spaces/slicerrt/wiki/20121127_Slicer_tutorials_at_RSNA_2012 SlicerRT wiki: Slicer tutorials at RSNA 2012]
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** Sample data: [http://slicer.kitware.com/midas3/folder/859 download] SlicerRT ART dose verification data from Midas server
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* Summer NA-MIC week 2012 tutorial
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** Tutorial presentation: [https://www.assembla.com/spaces/slicerrt/documents/aAuMq81Eqr4ztvacwqjQXA/download/aAuMq81Eqr4ztvacwqjQXA download] from the SlicerRT website
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** Sample data: [https://www.assembla.com/spaces/slicerrt/documents/bMuwgYTKur4yP-acwqjQWU/download/bMuwgYTKur4yP-acwqjQWU download] from the SlicerRT website
  
 
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{{documentation/{{documentation/version}}/module-section|References}}
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{{documentation/{{documentation/version}}/extension-section|Similar Extensions}}
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N/A
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* [[Documentation/{{documentation/version}}/Extensions/Plastimatch|Plastimatch]]: SlicerRT and Plastimatch are complementary software libraries. Plastimatch focuses on delivering new computational methods radiotherapy, while SlicerRT aims for providing an easy-to-use interface for a wide range of stable, well-tested radiotherapy related features. SlicerRT uses Plastimatch internally for certain operations.
  
 
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{{documentation/{{documentation/version}}/module-developerinfo}}
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* [https://www.assembla.com/spaces/slicerrt/wiki/SlicerRt_users_guide SlicerRT users guide pages]
  
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{{documentation/{{documentation/version}}/extension-section|Information for Developers}}
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Latest revision as of 16:07, 21 August 2013

Home < Documentation < 4.2 < Extensions < SlicerRT


For the latest Slicer documentation, visit the read-the-docs.


Cancer Care Ontario SparKit SparKit

Introduction and Acknowledgements

Authors: Csaba Pinter (PerkLab, Queen's University), Andras Lasso (PerkLab, Queen's University), Kevin Wang (Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto)
Contributors: Greg Sharp (Massachusetts General Hospital), Steve Pieper (Isomics)
Contacts:

  • Andras Lasso, <email>lasso@cs.queensu.ca</email>
  • Mailing list, <email>slicerrt@alerts.assembla.com</email> (need to register to Assembla using the email address from which the email is sent)
  • How to report an error

Website: slicerrt.org
License: Slicer license

Extension Description

SlicerRT Logo 2.0 128x128.png

SlicerRT is one of the themes of the SparKit (Software Platform and Adaptive Radiotherapy Kit) project with the goal of making 3D Slicer a powerful radiotherapy research platform. SparKit is a project funded by Cancer Care Ontarioand the Ontario Consortium for Adaptive Interventions in Radiation Oncology (OCAIRO) to provide free, open-source toolset for radiotherapy and related image-guided interventions.

The SlicerRT extension incorporates Plastimatch modules and algorithms.

Modules

Important note: BSpline Deformable registration and LANDWARP modules do not show up for Slicer 4.2 on Mac

Use Cases

  • Comparison of dose maps and dose volume histograms from various treatment planning systems
  • Evaluation of the effect of image-based non-rigid patient motion compensation
  • Dose accumulation with motion compensation
SlicerRT highlights

Tutorials

  • Summer NA-MIC week 2013 tutorial
    • Tutorial presentation: download from Slicer wiki
    • Sample data: download from MIDAS
  • ECR 2013 - Medical University Vienna workshop
    • Workshop material: download from NA-MIC.org
  • RSNA 2012 tutorial
  • Summer NA-MIC week 2012 tutorial
    • Tutorial presentation: download from the SlicerRT website
    • Sample data: download from the SlicerRT website

Similar Extensions

  • Plastimatch: SlicerRT and Plastimatch are complementary software libraries. Plastimatch focuses on delivering new computational methods radiotherapy, while SlicerRT aims for providing an easy-to-use interface for a wide range of stable, well-tested radiotherapy related features. SlicerRT uses Plastimatch internally for certain operations.

References

Information for Developers

Work in progress
 Section under construction.
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