Difference between revisions of "Documentation/4.2/Extensions/SlicerRT"
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| + | <noinclude>{{documentation/versioncheck}}</noinclude> | ||
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{{documentation/{{documentation/version}}/module-header}} | {{documentation/{{documentation/version}}/module-header}} | ||
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| − | + | [[File:LogoCco.png|Cancer Care Ontario]] | |
| + | [[File:Logo-SparKit.png|SparKit]] | ||
| + | [[File:LogoOCAIRO.jpg|SparKit]] | ||
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{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}} | {{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}} | ||
| − | Authors: Csaba Pinter (PerkLab, Queen's University), Andras Lasso (PerkLab, Queen's University), Kevin Wang (Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto)<br> | + | Authors: <b>Csaba Pinter</b> (PerkLab, Queen's University), <b>Andras Lasso</b> (PerkLab, Queen's University), <b>Kevin Wang</b> (Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto)<br> |
| − | + | Contributors: Greg Sharp (Massachusetts General Hospital), Steve Pieper (Isomics)<br> | |
| − | + | Contacts: | |
| + | * Andras Lasso, <email>lasso@cs.queensu.ca</email> | ||
| + | * Mailing list, <email>slicerrt@alerts.assembla.com</email> (need to register to [http://www.assembla.com Assembla] using the email address from which the email is sent) | ||
| + | * [https://www.assembla.com/spaces/slicerrt/wiki/How_to_report_an_error How to report an error] | ||
| + | Website: [http://slicerrt.github.io slicerrt.org]<br> | ||
License: [http://www.slicer.org/pages/LicenseText Slicer license] | License: [http://www.slicer.org/pages/LicenseText Slicer license] | ||
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{{documentation/{{documentation/version}}/extension-section|Extension Description}} | {{documentation/{{documentation/version}}/extension-section|Extension Description}} | ||
| + | {| | ||
| + | | | ||
| + | [[Image:SlicerRT_Logo_2.0_128x128.png]] | ||
| + | | | ||
SlicerRT is one of the themes of the SparKit (Software Platform and Adaptive Radiotherapy Kit) project with the goal of making 3D Slicer a powerful radiotherapy research platform. | SlicerRT is one of the themes of the SparKit (Software Platform and Adaptive Radiotherapy Kit) project with the goal of making 3D Slicer a powerful radiotherapy research platform. | ||
SparKit is a project funded by Cancer Care Ontarioand the Ontario Consortium for Adaptive Interventions in Radiation Oncology (OCAIRO) to provide free, open-source toolset for radiotherapy and related image-guided interventions. | SparKit is a project funded by Cancer Care Ontarioand the Ontario Consortium for Adaptive Interventions in Radiation Oncology (OCAIRO) to provide free, open-source toolset for radiotherapy and related image-guided interventions. | ||
| + | |||
| + | The SlicerRT extension incorporates [[Documentation/{{documentation/version}}/Extensions/Plastimatch|Plastimatch]] modules and algorithms. | ||
| + | | | ||
| + | |} | ||
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*[[Documentation/{{documentation/version}}/Modules/DoseComparison|Dose comparison]] | *[[Documentation/{{documentation/version}}/Modules/DoseComparison|Dose comparison]] | ||
*[[Documentation/{{documentation/version}}/Modules/Isodose|Isodose line and surface display]] | *[[Documentation/{{documentation/version}}/Modules/Isodose|Isodose line and surface display]] | ||
| + | *[[Documentation/{{documentation/version}}/Modules/ContourComparison|Contour comparison]] | ||
| + | *[[Documentation/{{documentation/version}}/Modules/ContourMorphology|Contour morphology]] | ||
| + | <!--*[[Documentation/{{documentation/version}}/Modules/PatientHierarchy|Patient hierarchy]]--> | ||
| + | *[[Documentation/{{documentation/version}}/Modules/DeformationFieldVisualizer|Transform visualizer (moved to separate extension)]] | ||
| + | |||
| + | * Modules from [[Documentation/{{documentation/version}}/Extensions/Plastimatch|Plastimatch]] (Greg Sharp) | ||
| + | **[[Documentation/{{documentation/version}}/Modules/PlmBSplineDeformableRegistration|Plastimatch Automatic deformable image registration]] (Greg Sharp) | ||
| + | **[[Documentation/{{documentation/version}}/Modules/PlmDICOMRTImport|Plastimatch DICOM-RT import]] (Greg Sharp) | ||
| + | **[[Documentation/{{documentation/version}}/Modules/PlmDICOMRTExport|Plastimatch DICOM-RT export]] (Greg Sharp)[[image:UnderConstruction.png|tumb|10px]] | ||
| + | **[[Documentation/{{documentation/version}}/Modules/PlmLANDWARP|Plastimatch LANDWARP Landmark]] (Greg Sharp) | ||
| + | **[[Documentation/{{documentation/version}}/Modules/PlmXFORMWARP|Plastimatch XFORMWARP]] (Greg Sharp)[[image:UnderConstruction.png|tumb|10px]] | ||
| + | |||
| + | Important note: BSpline Deformable registration and LANDWARP modules do not show up for Slicer 4.2 on Mac | ||
| + | <!-- | ||
| + | **[[Documentation/{{documentation/version}}/Modules/PlmDoseComparison|Plastimatch Dose Comparison]] (Greg Sharp)[[image:UnderConstruction.png|tumb|10px]] | ||
| + | **[[Documentation/{{documentation/version}}/Modules/PlmDoseVolumeHistogram|Plastimatch Dose Volume Histogram]] (Greg Sharp)[[image:UnderConstruction.png|tumb|10px]] | ||
| + | **[[Documentation/{{documentation/version}}/Modules/PlmSyntheticImageGeneration|Plastimatch Synthetic Image Generation]] (Greg Sharp)[[image:UnderConstruction.png|tumb|10px]] | ||
| + | **[[Documentation/{{documentation/version}}/Modules/PlmThreshBox|Plastimatch Threshold in a box]] (Greg Sharp)[[image:UnderConstruction.png|tumb|10px]] | ||
| + | --> | ||
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{{documentation/{{documentation/version}}/extension-section|Use Cases}} | {{documentation/{{documentation/version}}/extension-section|Use Cases}} | ||
* Comparison of dose maps and dose volume histograms from various treatment planning systems | * Comparison of dose maps and dose volume histograms from various treatment planning systems | ||
| − | * Evaluation the effect of image-based non-rigid patient motion compensation | + | * Evaluation of the effect of image-based non-rigid patient motion compensation |
* Dose accumulation with motion compensation | * Dose accumulation with motion compensation | ||
{|align="center" | {|align="center" | ||
| − | |[[ | + | |[[File:SlicerRT_0.10_Montage.png|1362px|SlicerRT highlights]] |
|} | |} | ||
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{{documentation/{{documentation/version}}/extension-section|Tutorials}} | {{documentation/{{documentation/version}}/extension-section|Tutorials}} | ||
| − | * Tutorial presentation: [https://www.assembla.com/spaces/slicerrt/documents/aAuMq81Eqr4ztvacwqjQXA/download/aAuMq81Eqr4ztvacwqjQXA | + | * Summer NA-MIC week 2013 tutorial |
| − | * Sample data: [https://www.assembla.com/spaces/slicerrt/documents/bMuwgYTKur4yP-acwqjQWU/download/bMuwgYTKur4yP-acwqjQWU | + | ** Tutorial presentation: [http://wiki.na-mic.org/Wiki/images/b/b0/SlicerRT_TutorialContestSummer2013.pdf download] from Slicer wiki |
| + | ** Sample data: [http://slicer.kitware.com/midas3/download/folder/1345/SlicerRtTutorial_Namic2013June.zip download] from MIDAS | ||
| + | * ECR 2013 - Medical University Vienna workshop | ||
| + | ** Workshop material: [http://www.na-mic.org/Wiki/index.php/File:Pinter_MedUni2013_Workshop.pdf download] from NA-MIC.org | ||
| + | * RSNA 2012 tutorial | ||
| + | ** Tutorial description: [https://www.assembla.com/spaces/slicerrt/wiki/20121127_Slicer_tutorials_at_RSNA_2012 SlicerRT wiki: Slicer tutorials at RSNA 2012] | ||
| + | ** Sample data: [http://slicer.kitware.com/midas3/folder/859 download] SlicerRT ART dose verification data from Midas server | ||
| + | * Summer NA-MIC week 2012 tutorial | ||
| + | ** Tutorial presentation: [https://www.assembla.com/spaces/slicerrt/documents/aAuMq81Eqr4ztvacwqjQXA/download/aAuMq81Eqr4ztvacwqjQXA download] from the SlicerRT website | ||
| + | ** Sample data: [https://www.assembla.com/spaces/slicerrt/documents/bMuwgYTKur4yP-acwqjQWU/download/bMuwgYTKur4yP-acwqjQWU download] from the SlicerRT website | ||
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Latest revision as of 16:07, 21 August 2013
Home < Documentation < 4.2 < Extensions < SlicerRT
|
For the latest Slicer documentation, visit the read-the-docs. |
Introduction and Acknowledgements
Authors: Csaba Pinter (PerkLab, Queen's University), Andras Lasso (PerkLab, Queen's University), Kevin Wang (Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto)
Contributors: Greg Sharp (Massachusetts General Hospital), Steve Pieper (Isomics)
Contacts:
- Andras Lasso, <email>lasso@cs.queensu.ca</email>
- Mailing list, <email>slicerrt@alerts.assembla.com</email> (need to register to Assembla using the email address from which the email is sent)
- How to report an error
Website: slicerrt.org
License: Slicer license
Extension Description
|
|
SlicerRT is one of the themes of the SparKit (Software Platform and Adaptive Radiotherapy Kit) project with the goal of making 3D Slicer a powerful radiotherapy research platform. SparKit is a project funded by Cancer Care Ontarioand the Ontario Consortium for Adaptive Interventions in Radiation Oncology (OCAIRO) to provide free, open-source toolset for radiotherapy and related image-guided interventions. The SlicerRT extension incorporates Plastimatch modules and algorithms. |
Modules
- DICOM-RT import
- Contours
- Dose volume histogram
- Dose accumulation
- Dose comparison
- Isodose line and surface display
- Contour comparison
- Contour morphology
- Transform visualizer (moved to separate extension)
- Modules from Plastimatch (Greg Sharp)
- Plastimatch Automatic deformable image registration (Greg Sharp)
- Plastimatch DICOM-RT import (Greg Sharp)
- Plastimatch DICOM-RT export (Greg Sharp)
- Plastimatch LANDWARP Landmark (Greg Sharp)
- Plastimatch XFORMWARP (Greg Sharp)
Important note: BSpline Deformable registration and LANDWARP modules do not show up for Slicer 4.2 on Mac
Use Cases
- Comparison of dose maps and dose volume histograms from various treatment planning systems
- Evaluation of the effect of image-based non-rigid patient motion compensation
- Dose accumulation with motion compensation
|
Tutorials
- Summer NA-MIC week 2013 tutorial
- ECR 2013 - Medical University Vienna workshop
- Workshop material: download from NA-MIC.org
- RSNA 2012 tutorial
- Tutorial description: SlicerRT wiki: Slicer tutorials at RSNA 2012
- Sample data: download SlicerRT ART dose verification data from Midas server
- Summer NA-MIC week 2012 tutorial
Similar Extensions
- Plastimatch: SlicerRT and Plastimatch are complementary software libraries. Plastimatch focuses on delivering new computational methods radiotherapy, while SlicerRT aims for providing an easy-to-use interface for a wide range of stable, well-tested radiotherapy related features. SlicerRT uses Plastimatch internally for certain operations.
References
Information for Developers
 |
Section under construction. |
