Difference between revisions of "Documentation/Nightly/Extensions/PET-IndiC"

From Slicer Wiki
Jump to: navigation, search
m (created)
 
m
Tag: 2017 source edit
 
(6 intermediate revisions by 2 users not shown)
Line 1: Line 1:
−
<noinclude>{{documentation/versioncheck}}</noinclude>
+
<noinclude>{{documentation/versioncheck}}
 +
</noinclude>
 
<!-- ---------------------------- -->
 
<!-- ---------------------------- -->
 
{{documentation/{{documentation/version}}/module-header}}
 
{{documentation/{{documentation/version}}/module-header}}
Line 23: Line 24:
 
}}
 
}}
 
{{documentation/{{documentation/version}}/module-introduction-end}}
 
{{documentation/{{documentation/version}}/module-introduction-end}}
−
 
  
 
<!-- ---------------------------- -->
 
<!-- ---------------------------- -->
 
{{documentation/{{documentation/version}}/extension-section|Extension Description}}
 
{{documentation/{{documentation/version}}/extension-section|Extension Description}}
−
The PET-IndiC Extension allows for fast segmentation of regions of interest and calculation of quantitative indices.
+
The PET-IndiC Extension allows calculation of quantitative indices related to PET scans such as as Peak, Volume, Total lesion Glycolysis (TLG) and includes:
 +
 
 +
*[[Documentation/{{documentation/version}}/Modules/QuantitativeIndicesTool|Quantitative Indices Tool]] GUI module for use with labelmaps
 +
*[[Documentation/{{documentation/version}}/Modules/PETVolumeSegmentStatisticsPlugin|PET Volume Segment Statistics Plugin]] that integrates with Slicer's [https://slicer.readthedocs.io/en/latest/user_guide/modules/segmentstatistics.html Segment Statistics module] module for use with Slicer's Segments.
 +
 
 +
 
 +
A detailed description of all supported indices can be found in [[Documentation/{{documentation/version}}/Modules/QuantitativeIndicesCLI#Index:_Description_.28units_for_SUVbw_images.29|Quantitative Indices CLI]]. To provide proper units for gray-value dependent indices, the image dataset must be loaded from a DICOM dataset via Slicer's [https://slicer.readthedocs.io/en/latest/user_guide/modules/dicom.html DICOM module].
 +
 
 +
{|
 +
|[[File:QuantitativeIndicesTool Screenshot3.png.png|thumb|350px|Quantitative Indices Tool GUI module]]
 +
|[[Image:QuantitativeIndicesTool_Screenshot2.png|thumb|350px|Lesion labelmap]]
 +
|}
 +
 
 +
{|
 +
|[[File:PETSegmentStatisticsPluginAnnotated.png|thumb|750px|PET Volume Segment Statistics Plugin]]
 +
|}
  
 
<!-- ---------------------------- -->
 
<!-- ---------------------------- -->
 +
 
{{documentation/{{documentation/version}}/extension-section|Modules}}
 
{{documentation/{{documentation/version}}/extension-section|Modules}}
−
*[[Documentation/{{documentation/version}}/Modules/QuantitativeIndicesCLI|Quantitative Indices CLI]]
 
−
*[[Documentation/{{documentation/version}}/Modules/QuantitativeIndicesTool|Quantitative Indices Tool]]
 
  
−
<!-- ---------------------------- -->
+
*[[Documentation/{{documentation/version}}/Modules/QuantitativeIndicesTool|Quantitative Indices Tool]] for use with labelmaps
−
{{documentation/{{documentation/version}}/extension-section|Recommendations}}
+
*[[Documentation/{{documentation/version}}/Modules/PETVolumeSegmentStatisticsPlugin|PET Volume Segment Statistics Plugin]] for use with Slicer Segments
−
The PET-IndiC Extension is meant to be coupled with the [[Documentation/{{documentation/version}}/Extensions/PETTumorSegmentation|PET-SEG Extension]].
+
*[[Documentation/{{documentation/version}}/Modules/QuantitativeIndicesCLI|Quantitative Indices CLI]] for command line usage outside of the Slicer GUI
  
 
<!-- ---------------------------- -->
 
<!-- ---------------------------- -->
 
{{documentation/{{documentation/version}}/extension-section|Information for Developers}}
 
{{documentation/{{documentation/version}}/extension-section|Information for Developers}}
−
* Source code: https://github.com/ejulrich/PET-IndiC
+
 
 +
*Source code: https://github.com/QIICR/PET-IndiC
  
 
<!-- ---------------------------- -->
 
<!-- ---------------------------- -->
 
{{documentation/{{documentation/version}}/extension-footer}}
 
{{documentation/{{documentation/version}}/extension-footer}}
 
<!-- ---------------------------- -->
 
<!-- ---------------------------- -->

Latest revision as of 19:02, 18 March 2022

Home < Documentation < Nightly < Extensions < PET-IndiC


For the latest Slicer documentation, visit the read-the-docs.


PET-IndiC.png

Introduction and Acknowledgements

Acknowledgments: The UIowa QIN PET-IndiC Extension was funded in part by Quantitative Imaging to Assess Response in Cancer Therapy Trials NIH grant U01-CA140206 and Quantitative Image Informatics for Cancer Research (QIICR) NIH grant U24 CA180918.
Authors: Ethan Ulrich (University of Iowa)
Contributors: Markus van Tol (University of Iowa), Christian Bauer (University of Iowa), Andrey Fedorov (SPL), Reinhard Beichel (University of Iowa), John Buatti (University of Iowa)
Contact: <email>qin@iibi.uiowa.edu</email>

License: Slicer License

The University of Iowa (UIowa)  
Quantitative Image Informatics for Cancer Research  
National Alliance for Medical Image Computing (NA-MIC)  

Extension Description

The PET-IndiC Extension allows calculation of quantitative indices related to PET scans such as as Peak, Volume, Total lesion Glycolysis (TLG) and includes:


A detailed description of all supported indices can be found in Quantitative Indices CLI. To provide proper units for gray-value dependent indices, the image dataset must be loaded from a DICOM dataset via Slicer's DICOM module.

Quantitative Indices Tool GUI module
Lesion labelmap
PET Volume Segment Statistics Plugin


Modules

Information for Developers

Retrieved from "https://www.slicer.org/w/index.php?title=Documentation/Nightly/Extensions/PET-IndiC&oldid=64020"