Difference between revisions of "Documentation/Nightly/Extensions/PET-IndiC"

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{{documentation/{{documentation/version}}/extension-section|Extension Description}}
 
{{documentation/{{documentation/version}}/extension-section|Extension Description}}
 
The PET-IndiC Extension allows for fast segmentation of regions of interest and calculation of quantitative indices.
 
The PET-IndiC Extension allows for fast segmentation of regions of interest and calculation of quantitative indices.
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==USAGE==
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PET-IndiC is an extension of the main Editor module in Slicer
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{|
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|[[Image:PET-IndiC_Screenshot1.png|thumb|800px|PET-IndiC Interface]]
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After selecting an input image, a label image is automatically assigned. Window/Level presets are available for PET SUV images. For import of DICOM PET images as SUV images, see the [[Documentation/{{documentation/version}}/Extensions/PETDICOM|PET DICOM Extension]].
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{|
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|[[Image:PET-IndiC_Screenshot2.png|thumb|375px|FDG PET (Inverted Grey)]]
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|[[Image:PET-IndiC_Screenshot3.png|thumb|375px|FDG PET (Rainbow)]]
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|}
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Segment the image using the Editor tools. The PET-IndiC Extension is meant to be coupled with the [[Documentation/{{documentation/version}}/Extensions/PETTumorSegmentation|PET-SEG Extension]] editor effect.
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{|
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|[[Image:PET-IndiC_Screenshot4.png|thumb|600px|Editor Effect options]]
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|}
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Quantitative indices are calculated automatically whenever a new label is created or the current label is modified. Several indices are available for calculation. The output appears as a table that can be copied and pasted into a spreadsheet.
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{|
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|[[Image:PET-IndiC_Screenshot5.png|thumb|700px|Quantitative indices options and output.]]
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{{documentation/{{documentation/version}}/extension-section|Modules}}
 
{{documentation/{{documentation/version}}/extension-section|Modules}}
 
*[[Documentation/{{documentation/version}}/Modules/QuantitativeIndicesCLI|Quantitative Indices CLI]]
 
*[[Documentation/{{documentation/version}}/Modules/QuantitativeIndicesCLI|Quantitative Indices CLI]]
 
*[[Documentation/{{documentation/version}}/Modules/QuantitativeIndicesTool|Quantitative Indices Tool]]
 
*[[Documentation/{{documentation/version}}/Modules/QuantitativeIndicesTool|Quantitative Indices Tool]]
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{{documentation/{{documentation/version}}/extension-section|Recommendations}}
 
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The PET-IndiC Extension is meant to be coupled with the [[Documentation/{{documentation/version}}/Extensions/PETTumorSegmentation|PET-SEG Extension]].
 
  
 
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Revision as of 15:54, 27 March 2015

Home < Documentation < Nightly < Extensions < PET-IndiC


For the latest Slicer documentation, visit the read-the-docs.


PET-IndiC.png

Introduction and Acknowledgements

Acknowledgments: The UIowa QIN PET-IndiC Extension was funded in part by Quantitative Imaging to Assess Response in Cancer Therapy Trials NIH grant U01-CA140206 and Quantitative Image Informatics for Cancer Research (QIICR) NIH grant U24 CA180918.
Authors: Ethan Ulrich (University of Iowa)
Contributors: Markus van Tol (University of Iowa), Christian Bauer (University of Iowa), Andrey Fedorov (SPL), Reinhard Beichel (University of Iowa), John Buatti (University of Iowa)
Contact: <email>qin@iibi.uiowa.edu</email>

License: Slicer License

The University of Iowa (UIowa)  
Quantitative Image Informatics for Cancer Research  
National Alliance for Medical Image Computing (NA-MIC)  


Extension Description

The PET-IndiC Extension allows for fast segmentation of regions of interest and calculation of quantitative indices.

USAGE

PET-IndiC is an extension of the main Editor module in Slicer

PET-IndiC Interface

After selecting an input image, a label image is automatically assigned. Window/Level presets are available for PET SUV images. For import of DICOM PET images as SUV images, see the PET DICOM Extension.

FDG PET (Inverted Grey)
FDG PET (Rainbow)

Segment the image using the Editor tools. The PET-IndiC Extension is meant to be coupled with the PET-SEG Extension editor effect.

Editor Effect options

Quantitative indices are calculated automatically whenever a new label is created or the current label is modified. Several indices are available for calculation. The output appears as a table that can be copied and pasted into a spreadsheet.

Quantitative indices options and output.

Modules

Information for Developers

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