Difference between revisions of "User:UpdateBot/Issue-2843-Consolidated-Extension-List"
From Slicer Wiki
(This page has been updated based on the list of extension description files available on the ExtensionsIndex) |
(This page has been updated based on the list of extension description files available on the ExtensionsIndex) |
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* [[#Modules_by_contributing_organization|Modules by contributing organization]] | * [[#Modules_by_contributing_organization|Modules by contributing organization]] | ||
* [[#Modules_by_contributing_individual|Modules by contributing individual]] | * [[#Modules_by_contributing_individual|Modules by contributing individual]] | ||
| + | * [[#Modules_by_type|Modules by type]] | ||
* [[#Extensions_by_name|Extensions by name]] | * [[#Extensions_by_name|Extensions by name]] | ||
* [[#Extensions_by_category|Extensions by category]] | * [[#Extensions_by_category|Extensions by category]] | ||
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* [[#Yixun_Liu|Yixun Liu]] | * [[#Yixun_Liu|Yixun Liu]] | ||
* [[#Yong_Zhang|Yong Zhang]] | * [[#Yong_Zhang|Yong Zhang]] | ||
| + | = Modules by type = | ||
| + | 3 types: | ||
| + | * [[#cli|cli]] | ||
| + | * [[#loadable|loadable]] | ||
| + | * [[#scripted|scripted]] | ||
| + | == cli == | ||
| + | * [http://www.nitrc.org/projects/abc ABC] <small>(cli, bundled in [http://www.nitrc.org/projects/abc ABC] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/ACPCTransform|ACPCTransform]] <small>(cli, built-in)</small> | ||
| + | * [[Documentation/Nightly/Modules/AddScalarVolumes|Add Scalar Volumes]] <small>(cli, built-in)</small> | ||
| + | * [[Documentation/Nightly/Extensions/AirwaySegmentation|Airway Segmentation CLI]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/AirwaySegmentation|Airway Segmentation]] extension)</small> | ||
| + | * [[Documentation/Nightly/Extensions/CMFreg|Apply Matrix]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small> | ||
| + | * [[Documentation/Nightly/Extensions/IASEM|Bin Shrink]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/BodyCentricCubicMesh|Body Centric Cubic Mesh]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/BRAINSDemonWarp|BRAINSDemon Warp]] <small>(cli, built-in)</small> | ||
| + | * BRAINSDWICleanup <small>(cli, built-in)</small> | ||
| + | * [[Documentation/Nightly/Modules/BRAINSFit|BRAINSFit]] <small>(cli, built-in)</small> | ||
| + | * BRAINSLabel Stats <small>(cli, built-in)</small> | ||
| + | * [[Documentation/Nightly/Modules/BRAINSResample|BRAINSResample]] <small>(cli, built-in)</small> | ||
| + | * BRAINSResize <small>(cli, built-in)</small> | ||
| + | * BRAINSROIAuto <small>(cli, built-in)</small> | ||
| + | * BRAINSTransform Convert <small>(cli, built-in)</small> | ||
| + | * [[Documentation/Nightly/Modules/BSplineToDeformationField|BSpline To Deformation Field]] <small>(cli, built-in)</small> | ||
| + | * [[Documentation/Nightly/Modules/CastScalarVolume|Cast Scalar Volume]] <small>(cli, built-in)</small> | ||
| + | * [[Documentation/Nightly/Modules/CheckerBoardFilter|Checker Board Filter]] <small>(cli, built-in)</small> | ||
| + | * [[Documentation/Nightly/Extensions/CleaverExtension|Cleaver CLI]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/CleaverExtension|Cleaver Extension]] extension)</small> | ||
| + | * CLIROITest <small>(cli, built-in)</small> | ||
| + | * [[Documentation/Nightly/Modules/CreateDICOMSeries|Create DICOMSeries]] <small>(cli, built-in)</small> | ||
| + | * [[Documentation/Nightly/Modules/CurvatureAnisotropicDiffusion|Curvature Anisotropic Diffusion]] <small>(cli, built-in)</small> | ||
| + | * [[Documentation/Nightly/Modules/DiffusionTensorScalarMeasurements|Diffusion Tensor Scalar Measurements]] <small>(cli, built-in)</small> | ||
| + | * Diffusion Tensor Test <small>(cli, built-in)</small> | ||
| + | * [[Documentation/Nightly/Modules/DiffusionWeightedVolumeMasking|Diffusion Weighted Volume Masking]] <small>(cli, built-in)</small> | ||
| + | * [[Documentation/Nightly/Extensions/ErodeDilateLabel|Dilate Label]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/ErodeDilateLabel|Erode Dilate Label]] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/Downsize|Downsize]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small> | ||
| + | * DTIexport <small>(cli, built-in)</small> | ||
| + | * DTIimport <small>(cli, built-in)</small> | ||
| + | * DWIConvert <small>(cli, built-in)</small> | ||
| + | * [[Documentation/Nightly/Modules/DWIJointRicianLMMSEFilter|DWIJoint Rician LMMSEFilter]] <small>(cli, built-in)</small> | ||
| + | * [[Documentation/Nightly/Modules/DWIRicianLMMSEFilter|DWIRician LMMSEFilter]] <small>(cli, built-in)</small> | ||
| + | * [[Documentation/Nightly/Modules/DWIToDTIEstimation|DWITo DTIEstimation]] <small>(cli, built-in)</small> | ||
| + | * [[Documentation/Nightly/Modules/DWIUnbiasedNonLocalMeansFilter|DWIUnbiased Non Local Means Filter]] <small>(cli, built-in)</small> | ||
| + | * EMSegment Command Line <small>(cli, built-in)</small> | ||
| + | * EMSegment Transform To New Format <small>(cli, built-in)</small> | ||
| + | * [[Documentation/Nightly/Extensions/ErodeDilateLabel|Erode Label]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/ErodeDilateLabel|Erode Dilate Label]] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/ExecutionModelTour|Execution Model Tour]] <small>(cli, built-in)</small> | ||
| + | * [[Documentation/Nightly/Modules/ExpertAutomatedRegistration|Expert Automated Registration]] <small>(cli, built-in)</small> | ||
| + | * [[Documentation/Nightly/Modules/ExtractSkeleton|Extract Skeleton]] <small>(cli, built-in)</small> | ||
| + | * Fiber Bundle Label Select <small>(cli, built-in)</small> | ||
| + | * [[Documentation/Nightly/Modules/FiducialRegistration|Fiducial Registration]] <small>(cli, built-in)</small> | ||
| + | * [[Documentation/Nightly/Modules/FinslerBacktracing|Finsler Backtracing]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/FinslerTractography|Finsler Tractography]] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/FinslerTractography|Finsler Tractography]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/FinslerTractography|Finsler Tractography]] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/GaussianBlurImageFilter|Gaussian Blur Image Filter]] <small>(cli, built-in)</small> | ||
| + | * [[Documentation/Nightly/Modules/GradientAnisotropicDiffusion|Gradient Anisotropic Diffusion]] <small>(cli, built-in)</small> | ||
| + | * [[Documentation/Nightly/Modules/GrayscaleFillHoleImageFilter|Grayscale Fill Hole Image Filter]] <small>(cli, built-in)</small> | ||
| + | * [[Documentation/Nightly/Modules/GrayscaleGrindPeakImageFilter|Grayscale Grind Peak Image Filter]] <small>(cli, built-in)</small> | ||
| + | * [[Documentation/Nightly/Modules/GrayscaleModelMaker|Grayscale Model Maker]] <small>(cli, built-in)</small> | ||
| + | * [[Documentation/Nightly/Modules/Growing|Growing]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/HistogramMatching|Histogram Matching]] <small>(cli, built-in)</small> | ||
| + | * [[Documentation/Nightly/Extensions/IASEM|IASEMImport]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small> | ||
| + | * [[Documentation/Nightly/Extensions/IASEM|IASEMImport Series]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small> | ||
| + | * [[Documentation/Nightly/Extensions/MABMIS|IGR3D MABMIS Testing]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/MABMIS|MABMIS]] extension)</small> | ||
| + | * [[Documentation/Nightly/Extensions/MABMIS|IGR3D MABMIS Training]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/MABMIS|MABMIS]] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/ImageLabelCombine|Image Label Combine]] <small>(cli, built-in)</small> | ||
| + | * [[Documentation/Nightly/Modules/ImageMaker|Image Maker]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/ImageMaker|Image Maker]] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/IntensityDifferenceMetric|Intensity Difference Metric]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/ChangeTracker|Change Tracker]] extension)</small> | ||
| + | * [[Documentation/Nightly/Extensions/IntensitySegmenter|Intensity Segmenter]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/IntensitySegmenter|Intensity Segmenter]] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/LabelAddition|Label Addition]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/LabelExtraction|Label Extraction]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/LabelMapSmoothing|Label Map Smoothing]] <small>(cli, built-in)</small> | ||
| + | * [[Documentation/Nightly/Modules/LAScarSegmenter|LAScar Segmenter]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/LAScarSegmenter|LAScar Segmenter]] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/MaskCreation|Mask Creation]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/MaskScalarVolume|Mask Scalar Volume]] <small>(cli, built-in)</small> | ||
| + | * [[Documentation/Nightly/Modules/MatlabCommander|Matlab Commander]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/MatlabBridge|Matlab Bridge]] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/MedianImageFilter|Median Image Filter]] <small>(cli, built-in)</small> | ||
| + | * [[Documentation/Nightly/Modules/MergeModels|Merge Models]] <small>(cli, built-in)</small> | ||
| + | * [[Documentation/Nightly/Modules/MeshCompression|Mesh Compression]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/ModelMaker|Model Maker]] <small>(cli, built-in)</small> | ||
| + | * [[Documentation/Nightly/Modules/ModelToLabelMap|Model To Label Map]] <small>(cli, built-in)</small> | ||
| + | * [[Documentation/Nightly/Modules/MultiplyScalarVolumes|Multiply Scalar Volumes]] <small>(cli, built-in)</small> | ||
| + | * [[Documentation/Nightly/Modules/N4ITKBiasFieldCorrection|N4ITKBias Field Correction]] <small>(cli, built-in)</small> | ||
| + | * [[Documentation/Nightly/Modules/NonGrowing|Non Growing]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/OrientScalarVolume|Orient Scalar Volume]] <small>(cli, built-in)</small> | ||
| + | * [[Documentation/Nightly/Modules/OtsuThresholdImageFilter|Otsu Threshold Image Filter]] <small>(cli, built-in)</small> | ||
| + | * [[Documentation/Nightly/Extensions/PBNRR|PBNRR]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/PBNRR|PBNRR]] extension)</small> | ||
| + | * Perform Metric Test <small>(cli, built-in)</small> | ||
| + | * [[Documentation/Nightly/Modules/PETStandardUptakeValueComputation|PETStandard Uptake Value Computation]] <small>(cli, built-in)</small> | ||
| + | * [[Documentation/Nightly/Extensions/LongitudinalPETCT|PETSUVImage Maker]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/LongitudinalPETCT|Longitudinal PETCT]] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/PkModeling|Pk Modeling]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/PkModeling|Pk Modeling]] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/ProbeVolumeWithModel|Probe Volume With Model]] <small>(cli, built-in)</small> | ||
| + | * [[Documentation/Nightly/Modules/ResampleDTIVolume|Resample DTIVolume]] <small>(cli, built-in)</small> | ||
| + | * [[Documentation/Nightly/Modules/ResampleScalarVectorDWIVolume|Resample Scalar Vector DWIVolume]] <small>(cli, built-in)</small> | ||
| + | * [[Documentation/Nightly/Modules/ResampleScalarVolume|Resample Scalar Volume]] <small>(cli, built-in)</small> | ||
| + | * [[Documentation/Nightly/Modules/RobustStatisticsSegmenter|Robust Statistics Segmenter]] <small>(cli, built-in)</small> | ||
| + | * [[Documentation/Nightly/Modules/SegmentationAidedRegistration|Segmentation Aided Registration]] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/SimpleRegionGrowingSegmentation|Simple Region Growing Segmentation]] <small>(cli, built-in)</small> | ||
| + | * [[Documentation/Nightly/Modules/SobolevSegmenter|Sobolev Segmenter]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/SobolevSegmenter|Sobolev Segmenter]] extension)</small> | ||
| + | * [[Documentation/Nightly/Extensions/IASEM|Spacing Aware Curvature Diffusion]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/SubtractScalarVolumes|Subtract Scalar Volumes]] <small>(cli, built-in)</small> | ||
| + | * [[Documentation/Nightly/Modules/SUVFactorCalculator|SUVFactor Calculator]] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/SwissSkullStripper|Swiss Skull Stripper]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/SwissSkullStripper|Swiss Skull Stripper]] extension)</small> | ||
| + | * Test Grid Transform Registration <small>(cli, built-in)</small> | ||
| + | * [[Documentation/Nightly/Modules/ThresholdScalarVolume|Threshold Scalar Volume]] <small>(cli, built-in)</small> | ||
| + | * [[Documentation/Nightly/Modules/TractographyLabelMapSeeding|Tractography Label Map Seeding]] <small>(cli, built-in)</small> | ||
| + | * VBRAINSDemon Warp <small>(cli, built-in)</small> | ||
| + | * [[Documentation/Nightly/Modules/VotingBinaryHoleFillingImageFilter|Voting Binary Hole Filling Image Filter]] <small>(cli, built-in)</small> | ||
| + | == loadable == | ||
| + | * [[Documentation/Nightly/Modules/Annotations|Annotations]] <small>(loadable, built-in)</small> | ||
| + | * [[Documentation/Nightly/Modules/Cameras|Cameras]] <small>(loadable, built-in)</small> | ||
| + | * [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/Colors|Colors]] <small>(loadable, built-in)</small> | ||
| + | * [[Documentation/Nightly/Modules/CropVolume|Crop Volume]] <small>(loadable, built-in)</small> | ||
| + | * [[Documentation/Nightly/Modules/Data|Data]] <small>(loadable, built-in)</small> | ||
| + | * [[Documentation/Nightly/Modules/DataStore|Data Store]] <small>(loadable, built-in)</small> | ||
| + | * [[Documentation/Nightly/Modules/DiceComputation|Dice Computation]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/DiceComputation|Dice Computation]] extension)</small> | ||
| + | * Double Arrays <small>(loadable, built-in)</small> | ||
| + | * EMSegment <small>(loadable, built-in)</small> | ||
| + | * EMSegment Quick <small>(loadable, built-in)</small> | ||
| + | * [[Documentation/Nightly/Modules/FastGrowCut|Fast Grow Cut]] <small>(loadable, bundled in [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect] extension)</small> | ||
| + | * [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Fast Grow Cut Segmenter] <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small> | ||
| + | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis Algo] <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small> | ||
| + | * [[Documentation/Nightly/Extensions/LongitudinalPETCT|Longitudinal PETCT]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/LongitudinalPETCT|Longitudinal PETCT]] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/Markups|Markups]] <small>(loadable, built-in)</small> | ||
| + | * [[Documentation/Nightly/Modules/MatlabModuleGenerator|Matlab Module Generator]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/MatlabBridge|Matlab Bridge]] extension)</small> | ||
| + | * [[Documentation/Nightly/Extensions/MultidimData|Metafile Importer]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/MultidimData|Multidim Data]] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/Models|Models]] <small>(loadable, built-in)</small> | ||
| + | * [[Documentation/Nightly/Modules/MultiVolumeExplorer|Multi Volume Explorer]] <small>(loadable, built-in)</small> | ||
| + | * [[Documentation/Nightly/Modules/OpenIGTLinkIF|Open IGTLink IF]] <small>(loadable, built-in)</small> | ||
| + | * [[Documentation/Nightly/Modules/PerkEvaluator|Perk Evaluator]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/PerkTutor|Perk Tutor]] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/Reformat|Reformat]] <small>(loadable, built-in)</small> | ||
| + | * [[Documentation/Nightly/Extensions/Reporting|Reporting]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/Reporting|Reporting]] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/SceneViews|Scene Views]] <small>(loadable, built-in)</small> | ||
| + | * [[Documentation/Nightly/Extensions/MultidimData|Sequence Browser]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/MultidimData|Multidim Data]] extension)</small> | ||
| + | * [[Documentation/Nightly/Extensions/MultidimData|Sequences]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/MultidimData|Multidim Data]] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/SubjectHierarchy|Subject Hierarchy]] <small>(loadable, built-in)</small> | ||
| + | * [[Documentation/Nightly/Modules/TrackerStabilizer|Tracker Stabilizer]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/TrackerStabilizer|Tracker Stabilizer]] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/TractographyDisplay|Tractography Display]] <small>(loadable, built-in)</small> | ||
| + | * Tractography Interactive Seeding <small>(loadable, built-in)</small> | ||
| + | * [[Documentation/Nightly/Modules/TransformRecorder|Transform Recorder]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/PerkTutor|Perk Tutor]] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/Transforms|Transforms]] <small>(loadable, built-in)</small> | ||
| + | * [[Documentation/Nightly/Modules/Units|Units]] <small>(loadable, built-in)</small> | ||
| + | * [[Documentation/Nightly/Modules/ViewControllers|View Controllers]] <small>(loadable, built-in)</small> | ||
| + | * [[Documentation/Nightly/Modules/VolumeRendering|Volume Rendering]] <small>(loadable, built-in)</small> | ||
| + | * [[Documentation/Nightly/Modules/Volumes|Volumes]] <small>(loadable, built-in)</small> | ||
| + | * [[Documentation/Nightly/Modules/Welcome|Welcome]] <small>(loadable, built-in)</small> | ||
| + | * [[Documentation/Nightly/Modules/WorkflowSegmentation|Workflow Segmentation]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/PerkTutor|Perk Tutor]] extension)</small> | ||
| + | == scripted == | ||
| + | * [[Documentation/Nightly/Extensions/IASEM|Binary Watershed Effect]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small> | ||
| + | * [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice Effect] <small>(scripted, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/ChangeTracker|Change Tracker]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/ChangeTracker|Change Tracker]] extension)</small> | ||
| + | * Charting <small>(scripted, built-in)</small> | ||
| + | * [[Documentation/Nightly/Modules/CompareVolumes|Compare Volumes]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/CornerAnnotation|Corner Annotation]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/CornerAnnotation|Corner Annotation]] extension)</small> | ||
| + | * [[Documentation/Nightly/Extensions/CurveMaker|Curve Maker]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/CurveMaker|Curve Maker]] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/DataProbe|Data Probe]] <small>(scripted, built-in)</small> | ||
| + | * [[Documentation/Nightly/Modules/DICOM|DICOM]] <small>(scripted, built-in)</small> | ||
| + | * DICOM2Full Brain Tractography <small>(scripted, built-in)</small> | ||
| + | * [[Documentation/Nightly/Extensions/IASEM|Double Threshold Effect]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/Editor|Editor]] <small>(scripted, built-in)</small> | ||
| + | * [[Documentation/Nightly/Modules/Endoscopy|Endoscopy]] <small>(scripted, built-in)</small> | ||
| + | * [[Documentation/Nightly/Modules/ExtensionWizard|Extension Wizard]] <small>(scripted, built-in)</small> | ||
| + | * [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect] <small>(scripted, bundled in [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/FiberBundleToLabelMap|Fiber Bundle To Label Map]] <small>(scripted, built-in)</small> | ||
| + | * [[Documentation/Nightly/Modules/GyroGuide|Gyro Guide]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/GyroGuide|Gyro Guide]] extension)</small> | ||
| + | * [[Documentation/Nightly/Extensions/iGyne|i Gyne]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/iGyne|i Gyne]] extension)</small> | ||
| + | * [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter KUtil] <small>(scripted, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small> | ||
| + | * [[Documentation/Nightly/Extensions/IASEM|Label Object Statistics]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/LabelStatistics|Label Statistics]] <small>(scripted, built-in)</small> | ||
| + | * [[Documentation/Nightly/Extensions/Reporting|Label To DICOMSEGConverter]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/Reporting|Reporting]] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/LandmarkRegistration|Landmark Registration]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/MultiVolumeImporter|Multi Volume Importer]] <small>(scripted, built-in)</small> | ||
| + | * [[Documentation/Nightly/Extensions/NeedleFinder|Needle Finder]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/NeedleFinder|Needle Finder]] extension)</small> | ||
| + | * [[Documentation/Nightly/Extensions/PercutaneousApproachAnalysis|Percutaneous Approach Analysis]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PercutaneousApproachAnalysis|Percutaneous Approach Analysis]] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/PortPlacement|Port Placement]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PortPlacement|Port Placement]] extension)</small> | ||
| + | * [[Documentation/Nightly/Extensions/PyDevRemoteDebug|Py Dev Remote Debug]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PyDevRemoteDebug|Py Dev Remote Debug]] extension)</small> | ||
| + | * [[Documentation/Nightly/Extensions/PerkTutor|Python Metrics Calculator]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PerkTutor|Perk Tutor]] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/SampleData|Sample Data]] <small>(scripted, built-in)</small> | ||
| + | * Scene Performance <small>(scripted, built-in)</small> | ||
| + | * [[Documentation/Nightly/Extensions/Scoliosis|Scoliosis Monitoring]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/Scoliosis|Scoliosis]] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/SimpleFilters|Simple Filters]] <small>(scripted, built-in)</small> | ||
| + | * Slice Link Logic <small>(scripted, built-in)</small> | ||
| + | * Slicer4Minute <small>(scripted, built-in)</small> | ||
| + | * [[Documentation/Nightly/Modules/SlicerToKiwiExporter|Slicer To Kiwi Exporter]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerToKiwiExporter|Slicer To Kiwi Exporter]] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/SpinalCurvatureMeasurement|Spinal Curvature Measurement]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/Scoliosis|Scoliosis]] extension)</small> | ||
| + | * [[Documentation/Nightly/Extensions/CMFreg|Surface Registration]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/SurfaceToolbox|Surface Toolbox]] <small>(scripted, built-in)</small> | ||
| + | * [[Documentation/Nightly/Extensions/TCIABrowser|TCIABrowser]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/TCIABrowser|TCIABrowser]] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/ThingiverseBrowser|Thingiverse Browser]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/ThingiverseBrowser|Thingiverse Browser]] extension)</small> | ||
| + | * [[Documentation/Nightly/Modules/VectorToScalarVolume|Vector To Scalar Volume]] <small>(scripted, built-in)</small> | ||
| + | * [[Documentation/Nightly/Extensions/VolumeClip|Volume Clip With Model]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/VolumeClip|Volume Clip]] extension)</small> | ||
| + | * [[Documentation/Nightly/Extensions/VolumeClip|Volume Clip With Roi]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/VolumeClip|Volume Clip]] extension)</small> | ||
| + | * Volume Rendering Scene Close <small>(scripted, built-in)</small> | ||
| + | * [[Documentation/Nightly/Extensions/WindowLevelEffect|Window Level Effect]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/WindowLevelEffect|Window Level Effect]] extension)</small> | ||
| + | * [[Documentation/Nightly/Extensions/XNATSlicer|Xnat Slicer]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/XNATSlicer|XNATSlicer]] extension)</small> | ||
| + | = Modules by type = | ||
| + | 3 types: | ||
| + | * [[#cli|cli]] | ||
| + | * [[#loadable|loadable]] | ||
| + | * [[#scripted|scripted]] | ||
= Extensions by name = | = Extensions by name = | ||
67 extensions: | 67 extensions: | ||
Revision as of 01:11, 5 December 2014
- Modules by name
- Modules by category
- Modules by contributing organization
- Modules by contributing individual
- Modules by type
- Extensions by name
- Extensions by category
- Extensions by contributing organization
- Extensions by contributing individual
Modules by name
156 modules:
- ABC (cli, bundled in ABC extension)
- ACPCTransform (cli, built-in)
- Add Scalar Volumes (cli, built-in)
- Airway Segmentation CLI (cli, bundled in Airway Segmentation extension)
- Annotations (loadable, built-in)
- Apply Matrix (cli, bundled in CMFreg extension)
- Bin Shrink (cli, bundled in IASEM extension)
- Body Centric Cubic Mesh (cli, bundled in CBC 3D I2MConversion extension)
- BRAINSDemon Warp (cli, built-in)
- BRAINSDWICleanup (cli, built-in)
- BRAINSFit (cli, built-in)
- BRAINSLabel Stats (cli, built-in)
- BRAINSResample (cli, built-in)
- BRAINSResize (cli, built-in)
- BRAINSROIAuto (cli, built-in)
- BRAINSTransform Convert (cli, built-in)
- Carrera Slice (loadable, bundled in Carrera Slice extension)
- Cast Scalar Volume (cli, built-in)
- Change Tracker (scripted, bundled in Change Tracker extension)
- Checker Board Filter (cli, built-in)
- Cleaver CLI (cli, bundled in Cleaver Extension extension)
- Colors (loadable, built-in)
- Compare Volumes (scripted, bundled in CMFreg extension)
- Corner Annotation (scripted, bundled in Corner Annotation extension)
- Create DICOMSeries (cli, built-in)
- Crop Volume (loadable, built-in)
- Curvature Anisotropic Diffusion (cli, built-in)
- Curve Maker (scripted, bundled in Curve Maker extension)
- Data (loadable, built-in)
- Data Probe (scripted, built-in)
- Data Store (loadable, built-in)
- Dice Computation (loadable, bundled in Dice Computation extension)
- DICOM (scripted, built-in)
- DICOM2Full Brain Tractography (scripted, built-in)
- Diffusion Tensor Scalar Measurements (cli, built-in)
- Diffusion Weighted Volume Masking (cli, built-in)
- Dilate Label (cli, bundled in Erode Dilate Label extension)
- Downsize (cli, bundled in CMFreg extension)
- DWIConvert (cli, built-in)
- DWIJoint Rician LMMSEFilter (cli, built-in)
- DWIRician LMMSEFilter (cli, built-in)
- DWITo DTIEstimation (cli, built-in)
- Editor (scripted, built-in)
- EMSegment (loadable, built-in)
- EMSegment Command Line (cli, built-in)
- EMSegment Quick (loadable, built-in)
- EMSegment Transform To New Format (cli, built-in)
- Endoscopy (scripted, built-in)
- Erode Label (cli, bundled in Erode Dilate Label extension)
- Extract Skeleton (cli, built-in)
- Fast Grow Cut (loadable, bundled in Fast Grow Cut Effect extension)
- Fast Grow Cut Segmenter (loadable, bundled in Carrera Slice extension)
- Fiber Bundle Label Select (cli, built-in)
- Fiber Bundle To Label Map (scripted, built-in)
- Fiducial Registration (cli, built-in)
- Finsler Backtracing (cli, bundled in Finsler Tractography extension)
- Finsler Tractography (cli, bundled in Finsler Tractography extension)
- Gaussian Blur Image Filter (cli, built-in)
- Gel Dosimetry Analysis Algo (loadable, bundled in Gel Dosimetry Analysis extension)
- Gradient Anisotropic Diffusion (cli, built-in)
- Grayscale Fill Hole Image Filter (cli, built-in)
- Grayscale Grind Peak Image Filter (cli, built-in)
- Grayscale Model Maker (cli, built-in)
- Growing (cli, bundled in CMFreg extension)
- Gyro Guide (scripted, bundled in Gyro Guide extension)
- Histogram Matching (cli, built-in)
- IASEMImport (cli, bundled in IASEM extension)
- IASEMImport Series (cli, bundled in IASEM extension)
- IGR3D MABMIS Testing (cli, bundled in MABMIS extension)
- IGR3D MABMIS Training (cli, bundled in MABMIS extension)
- i Gyne (scripted, bundled in i Gyne extension)
- Image Label Combine (cli, built-in)
- Intensity Difference Metric (cli, bundled in Change Tracker extension)
- Intensity Segmenter (cli, bundled in Intensity Segmenter extension)
- KUtil (scripted, bundled in Carrera Slice extension)
- Label Addition (cli, bundled in CMFreg extension)
- Label Extraction (cli, bundled in CMFreg extension)
- Label Map Smoothing (cli, built-in)
- Label Object Statistics (scripted, bundled in IASEM extension)
- Label Statistics (scripted, built-in)
- Label To DICOMSEGConverter (scripted, bundled in Reporting extension)
- Landmark Registration (scripted, bundled in CMFreg extension)
- LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
- Longitudinal PETCT (loadable, bundled in Longitudinal PETCT extension)
- Markups (loadable, built-in)
- Mask Creation (cli, bundled in CMFreg extension)
- Mask Scalar Volume (cli, built-in)
- Median Image Filter (cli, built-in)
- Merge Models (cli, built-in)
- Mesh Compression (cli, bundled in CBC 3D I2MConversion extension)
- Metafile Importer (loadable, bundled in Multidim Data extension)
- Model Maker (cli, built-in)
- Models (loadable, built-in)
- Model To Label Map (cli, built-in)
- Multiply Scalar Volumes (cli, built-in)
- Multi Volume Explorer (loadable, built-in)
- Multi Volume Importer (scripted, built-in)
- N4ITKBias Field Correction (cli, built-in)
- Needle Finder (scripted, bundled in Needle Finder extension)
- Non Growing (cli, bundled in CMFreg extension)
- Open IGTLink IF (loadable, built-in)
- Orient Scalar Volume (cli, built-in)
- PBNRR (cli, bundled in PBNRR extension)
- Percutaneous Approach Analysis (scripted, bundled in Percutaneous Approach Analysis extension)
- Perform Metric Test (cli, built-in)
- Perk Evaluator (loadable, bundled in Perk Tutor extension)
- PETStandard Uptake Value Computation (cli, built-in)
- PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
- Pk Modeling (cli, bundled in Pk Modeling extension)
- Port Placement (scripted, bundled in Port Placement extension)
- Probe Volume With Model (cli, built-in)
- Python Metrics Calculator (scripted, bundled in Perk Tutor extension)
- Reformat (loadable, built-in)
- Reporting (loadable, bundled in Reporting extension)
- Resample DTIVolume (cli, built-in)
- Resample Scalar Vector DWIVolume (cli, built-in)
- Robust Statistics Segmenter (cli, built-in)
- Sample Data (scripted, built-in)
- Scene Views (loadable, built-in)
- Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)
- Sequence Browser (loadable, bundled in Multidim Data extension)
- Sequences (loadable, bundled in Multidim Data extension)
- Simple Filters (scripted, built-in)
- Simple Region Growing Segmentation (cli, built-in)
- Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)
- Sobolev Segmenter (cli, bundled in Sobolev Segmenter extension)
- Spacing Aware Curvature Diffusion (cli, bundled in IASEM extension)
- Spinal Curvature Measurement (scripted, bundled in Scoliosis extension)
- Subject Hierarchy (loadable, built-in)
- Subtract Scalar Volumes (cli, built-in)
- Surface Registration (scripted, bundled in CMFreg extension)
- Surface Toolbox (scripted, built-in)
- SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
- Swiss Skull Stripper (cli, bundled in Swiss Skull Stripper extension)
- TCIABrowser (scripted, bundled in TCIABrowser extension)
- Thingiverse Browser (scripted, bundled in Thingiverse Browser extension)
- Threshold Scalar Volume (cli, built-in)
- Tracker Stabilizer (loadable, bundled in Tracker Stabilizer extension)
- Tractography Display (loadable, built-in)
- Tractography Interactive Seeding (loadable, built-in)
- Tractography Label Map Seeding (cli, built-in)
- Transform Recorder (loadable, bundled in Perk Tutor extension)
- Transforms (loadable, built-in)
- Units (loadable, built-in)
- VBRAINSDemon Warp (cli, built-in)
- Vector To Scalar Volume (scripted, built-in)
- View Controllers (loadable, built-in)
- Volume Clip With Model (scripted, bundled in Volume Clip extension)
- Volume Clip With Roi (scripted, bundled in Volume Clip extension)
- Volume Rendering (loadable, built-in)
- Volumes (loadable, built-in)
- Voting Binary Hole Filling Image Filter (cli, built-in)
- Welcome (loadable, built-in)
- Window Level Effect (scripted, bundled in Window Level Effect extension)
- Workflow Segmentation (loadable, bundled in Perk Tutor extension)
- Xnat Slicer (scripted, bundled in XNATSlicer extension)
Modules by name
156 modules:
Modules by category
30 categories:
- BRAINS
- CMF Registration
- Converters
- Developer Tools
- Diffusion
- Editor Effects
- Endoscopy
- Examples
- Exporter
- Filtering
- IGT
- Informatics
- Legacy
- Mesh Generation
- Mesh Generation
- Microscopy
- Multidimensional data
- Multi Volume Support
- Perk Tutor
- Quantification
- Registration
- Segmentation
- Slicelets
- Surface Models
- Testing
- Unspecified
- Utilities
- Wizards
- Work in Progress
- XNATSlicer
BRAINS
LabelStatistics
- BRAINSLabelStats
CMF Registration
- ApplyMatrix
- LandmarkRegistration
- SurfaceRegistration
- LabelExtraction
- LabelAddition
- Downsize
Voxelbase Registration
- Growing
- MaskCreation
- NonGrowing
Converters
- VectorToScalarVolume
- CropVolume
- CreateDICOMSeries
- OrientScalarVolume
Developer Tools
- EventBroker
- DoubleArrays
- PyDevRemoteDebug
- Cameras
- ExtensionWizard
- ExecutionModelTour
- ImageMaker
DICOM Plugins
- DICOMRWVMPlugin
- DICOMLongitudinalPETCTPlugin
- MultiVolumeImporterPlugin
- DICOMPETSUVPlugin
- DICOMDiffusionVolumePlugin
- DICOMSegmentationPlugin
- DICOMScalarVolumePlugin
- DICOMSlicerDataBundlePlugin
Editor Extensions
- BinaryWatershedEffect
- FastGrowCutEffect
- CarreraSliceEffect
- DoubleThresholdEffect
Matlab
- MatlabModuleGenerator
- MatlabCommander
Diffusion
- TractographyDisplay
- DICOM2FullBrainTractography
Diffusion Data Conversion
- DWIConvert
Diffusion Tensor Images
- ResampleDTIVolume
- DiffusionTensorScalarMeasurements
- TractographyLabelMapSeeding
- TractographyInteractiveSeeding
Diffusion Weighted Images
- DWIRicianLMMSEFilter
- DWIJointRicianLMMSEFilter
- DWIToDTIEstimation
- FinslerBacktracing
- ResampleScalarVectorDWIVolume
- FinslerTractography
- DiffusionWeightedVolumeMasking
Tractography
- FiberBundleToLabelMap
- FiberBundleLabelSelect
Editor Effects
- WindowLevelEffect
Endoscopy
- Endoscopy
Examples
- CarreraSlice
- FastGrowCut
- FastGrowCutSegmenter
- SegmentationAidedRegistration
Exporter
- SlicerToKiwiExporter
Filtering
- ExtractSkeleton
- ThresholdScalarVolume
- N4ITKBiasFieldCorrection
- SimpleFilters
- ImageLabelCombine
- VotingBinaryHoleFillingImageFilter
- HistogramMatching
- CheckerBoardFilter
Arithmetic
- MultiplyScalarVolumes
- AddScalarVolumes
- CastScalarVolume
- SubtractScalarVolumes
- MaskScalarVolume
Denoising
- GradientAnisotropicDiffusion
- MedianImageFilter
- GaussianBlurImageFilter
- CurvatureAnisotropicDiffusion
Morphology
- GrayscaleFillHoleImageFilter
- ErodeLabel
- DilateLabel
- GrayscaleGrindPeakImageFilter
IGT
- PercutaneousApproachAnalysis
- PortPlacement
- OpenIGTLinkIF
- NeedleFinder
- TrackerStabilizer
- GyroGuide
- iGyne
- CornerAnnotation
Informatics
- Annotations
- Markups
- Units
- DICOM
- SampleData
- SubjectHierarchy
- Data
- Colors
- CurveMaker
- TCIABrowser
Legacy
Converters
- BSplineToDeformationField
Diffusion
Denoising
- DWIUnbiasedNonLocalMeansFilter
Diffusion Data Conversion
- DTIimport
- DTIexport
Filtering
- OtsuThresholdImageFilter
- ResampleScalarVolume
Registration
- TestGridTransformRegistration
- ExpertAutomatedRegistration
Work in Progress
Diffusion Tensor
Test
- DiffusionTensorTest
Mesh Generation
- CleaverCLI
MeshGeneration
- BodyCentricCubicMesh
- MeshCompression
Microscopy
- BinShrink
- LabelObjectStatistics
- SpacingAwareCurvatureDiffusion
- IASEMImportSeries
- IASEMImport
Multidimensional data
- MetafileImporter
- SequenceBrowser
- Sequences
MultiVolume Support
- MultiVolumeExplorer
- MultiVolumeImporter
Perk Tutor
- PythonMetricsCalculator
- WorkflowSegmentation
- TransformRecorder
- PerkEvaluator
Quantification
- PETStandardUptakeValueComputation
- SUVFactorCalculator
- SpinalCurvatureMeasurement
- PkModeling
- LabelStatistics
- PETSUVImageMaker
- DiceComputation
- DataProbe
ChangeQuantification
- IntensityDifferenceMetric
Registration
- BRAINSResample
- Transforms
- BRAINSResize
- PerformMetricTest
- BRAINSFit
- PBNRR
Specialized
- ACPCTransform
- FiducialRegistration
- VBRAINSDemonWarp
- BRAINSDemonWarp
- Reformat
Segmentation
- Editor
- EMSegmentQuick
- SimpleRegionGrowingSegmentation
- EMSegment
- VolumeClipWithRoi
- SwissSkullStripper
- AirwaySegmentationCLI
- LAScarSegmenter
- SobolevSegmenter
- VolumeClipWithModel
- IGR3D_MABMIS_Testing
- ABC
- IGR3D_MABMIS_Training
- IntensitySegmenter
Specialized
- EMSegmentCommandLine
- RobustStatisticsSegmenter
- BRAINSROIAuto
Slicelets
- GelDosimetryAnalysisAlgo
Surface Models
- ModelToLabelMap
- MergeModels
- SurfaceToolbox
- ProbeVolumeWithModel
- GrayscaleModelMaker
- LabelMapSmoothing
- ModelMaker
Testing
- SelfTests
- CLIROITest
- CLI4Test
- ThresholdThreadingTest
- ScoliosisMonitoring
- PerformanceTests
- SlicerMRBTest
TestCases
- SliceLinkLogic
- AtlasTests
- RSNAQuantTutorial
- VolumeRenderingSceneClose
- test_tractography_display
- SubjectHierarchyCorePluginsSelfTest
- slicerCloseCrashBug2590
- SubjectHierarchyGenericSelfTest
- Charting
- ScenePerformance
- MarkupsInCompareViewersSelfTest
- fiber_visibility_crash2438
- sceneImport2428
- RSNAVisTutorial
- JRC2013Vis
- RSNA2012ProstateDemo
- AddManyMarkupsFiducialTest
- NeurosurgicalPlanningTutorialMarkupsSelfTest
- ColorsScalarBarSelfTest
- MarkupsInViewsSelfTest
- ChangeTrackerSelfTest
- FiducialLayoutSwitchBug1914
- ViewControllersSliceInterpolationBug1926
- Slicer4Minute
- labelToggleBug2049
Unspecified
- BRAINSDWICleanup
Utilities
- ThingiverseBrowser
- EMSegmentTransformToNewFormat
- DataStore
BRAINS
- BRAINSTransformConvert
Wizards
- CompareVolumes
- ChangeTracker
Work in Progress
- LongitudinalPETCT
Converters
- LabelToDICOMSEGConverter
Informatics
- Reporting
TestCases
- ReportingSelfTest
- LabelToDICOMSEGConverterSelfTest
XNATSlicer
- XnatSlicer
Modules by contributing organization
62 contributing organizations:
- Asclepios INRIA
- AZE R&D
- Brigham and Women's Hospital
- BWH
- BWH, SPL
- BWH, SUMS
- BWH/UAB
- College of Information Engineering, Zhejiang University of Technology, Hangzhou, China); Xiaolei Chen, Jiashu Zhang(Department of Neurosurgery, PLA General Hospital, Beijing, China
- CRTC
- gatech
- GE
- Georgia Institute of Technology
- Georgia Tech
- IBM
- Isomics
- Isomics Inc.
- Isomics, Inc.
- Isomics, pieper@isomics.com
- Kitware
- Kitware)
- MGH
- Moka Creative, LLC, kumar.sunil.p@gmail.com
- MSC/NLM
- Noware
- Orobix
- Perk Lab at Queen's University
- Perk Lab, Queen's
- Perk Lab, Queen's University
- PMH
- Queen's
- Queen's University
- Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto
- SAIC-Frederick, NCI-Frederick
- SBU
- SCI Institute
- Shiga University of Medical Science, Japan, SPL
- SNR
- SPL
- SPL B&W Harvard
- SPL, BWH
- SPL, BWH, UPenn
- Stony Brook University
- SUMS
- Surgical Planning Lab
- UAB
- Uiowa
- UIowa
- UNC
- Univ of Michigan
- Univ. of Iowa
- University College Cork
- University of Alabama Birmingham
- University of Heidelberg
- University of Iowa
- University of Iowa) and Andrey Fedorov (SPL
- UPenn
- Utah
- UVa
- UWA
- Wash U-St. Louis, dmarcus@wustl.edu
- while at GE
Asclepios INRIA
AZE R&D
- JRC2013Vis
Brigham and Women's Hospital
- Corner Annotation (scripted, bundled in Corner Annotation extension)
- Surface Toolbox (scripted, built-in)
- test tractography display
BWH
- Add Many Markups Fiducial Test
- Change Tracker Self Test
- Colors Scalar Bar Self Test
- Curve Maker (scripted, bundled in Curve Maker extension)
- Dice Computation (loadable, bundled in Dice Computation extension)
- DICOMRWVMPlugin
- Fast Grow Cut Effect (scripted, bundled in Fast Grow Cut Effect extension)
- Fiducial Layout Switch Bug1914
- Markups (loadable, built-in)
- Markups In Compare Viewers Self Test
- Markups In Views Self Test
- Neurosurgical Planning Tutorial Markups Self Test
- Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)
- Volume Rendering Scene Close (scripted, built-in)
- Window Level Effect (scripted, bundled in Window Level Effect extension)
BWH, SPL
- Crop Volume (loadable, built-in)
BWH, SUMS
- Corner Annotation (scripted, bundled in Corner Annotation extension)
BWH/UAB
- Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)
College of Information Engineering, Zhejiang University of Technology, Hangzhou, China); Xiaolei Chen, Jiashu Zhang(Department of Neurosurgery, PLA General Hospital, Beijing, China
- Gyro Guide (scripted, bundled in Gyro Guide extension)
CRTC
- Body Centric Cubic Mesh (cli, bundled in CBC 3D I2MConversion extension)
- Mesh Compression (cli, bundled in CBC 3D I2MConversion extension)
- PBNRR (cli, bundled in PBNRR extension)
gatech
- Robust Statistics Segmenter (cli, built-in)
GE
- Add Scalar Volumes (cli, built-in)
- Charting (scripted, built-in)
- Checker Board Filter (cli, built-in)
- Create DICOMSeries (cli, built-in)
- Curvature Anisotropic Diffusion (cli, built-in)
- Diffusion Tensor Test (cli, built-in)
- DWIConvert (cli, built-in)
- Execution Model Tour (cli, built-in)
- Gradient Anisotropic Diffusion (cli, built-in)
- Grayscale Fill Hole Image Filter (cli, built-in)
- Grayscale Grind Peak Image Filter (cli, built-in)
- Grayscale Model Maker (cli, built-in)
- Histogram Matching (cli, built-in)
- Label Map Smoothing (cli, built-in)
- Median Image Filter (cli, built-in)
- Model Maker (cli, built-in)
- Model To Label Map (cli, built-in)
- Multiply Scalar Volumes (cli, built-in)
- Orient Scalar Volume (cli, built-in)
- Otsu Threshold Image Filter (cli, built-in)
- Pk Modeling (cli, bundled in Pk Modeling extension)
- Resample Scalar Volume (cli, built-in)
- Simple Region Growing Segmentation (cli, built-in)
- Slice Link Logic (scripted, built-in)
- Slicer4Minute (scripted, built-in)
- Spacing Aware Curvature Diffusion (cli, bundled in IASEM extension)
- Subtract Scalar Volumes (cli, built-in)
- View Controllers (loadable, built-in)
- View Controllers Slice Interpolation Bug1926
- Voting Binary Hole Filling Image Filter (cli, built-in)
Georgia Institute of Technology
- Carrera Slice Effect (scripted, bundled in Carrera Slice extension)
Georgia Tech
- Carrera Slice (loadable, bundled in Carrera Slice extension)
IBM
- Annotations (loadable, built-in)
Isomics
- Atlas Tests
- Binary Watershed Effect (scripted, bundled in IASEM extension)
- Compare Volumes (scripted, bundled in CMFreg extension)
- Data (loadable, built-in)
- Data Probe (scripted, built-in)
- DICOM (scripted, built-in)
- Editor (scripted, built-in)
- Endoscopy (scripted, built-in)
- fiber visibility crash2438
- Fiber Bundle To Label Map (scripted, built-in)
- Label Statistics (scripted, built-in)
- label Toggle Bug2049
- Landmark Registration (scripted, bundled in CMFreg extension)
- Models (loadable, built-in)
- Performance Tests
- Reporting (loadable, bundled in Reporting extension)
- RSNA2012Prostate Demo
- RSNAQuant Tutorial
- RSNAVis Tutorial
- Sample Data (scripted, built-in)
- scene Import2428
- Self Tests
- Simple Filters (scripted, built-in)
- slicer Close Crash Bug2590
- Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)
- Tractography Interactive Seeding (loadable, built-in)
- Transforms (loadable, built-in)
- Vector To Scalar Volume (scripted, built-in)
- View Controllers (loadable, built-in)
- Volume Rendering (loadable, built-in)
- Volumes (loadable, built-in)
Isomics Inc.
- DICOMDiffusion Volume Plugin
- DICOMLongitudinal PETCTPlugin
- DICOMScalar Volume Plugin
- DICOMSlicer Data Bundle Plugin
- Slicer MRBTest
- Threshold Threading Test
Isomics, Inc.
- Carrera Slice Effect (scripted, bundled in Carrera Slice extension)
Isomics, pieper@isomics.com
- Xnat Slicer (scripted, bundled in XNATSlicer extension)
Kitware
- Cameras (loadable, built-in)
- Colors (loadable, built-in)
- Data (loadable, built-in)
- Data Store (loadable, built-in)
- Double Arrays (loadable, built-in)
- Event Broker
- Expert Automated Registration (cli, built-in)
- Extension Wizard (scripted, built-in)
- Extract Skeleton (cli, built-in)
- Fast Grow Cut (loadable, bundled in Fast Grow Cut Effect extension)
- Fast Grow Cut Segmenter (loadable, bundled in Carrera Slice extension)
- fiber visibility crash2438
- Fiducial Registration (cli, built-in)
- Gaussian Blur Image Filter (cli, built-in)
- Image Maker (cli, bundled in Image Maker extension)
- label Toggle Bug2049
- Matlab Commander (cli, bundled in Matlab Bridge extension)
- Matlab Module Generator (loadable, bundled in Matlab Bridge extension)
- Models (loadable, built-in)
- Multi Volume Explorer (loadable, built-in)
- Multi Volume Importer (scripted, built-in)
- Port Placement (scripted, bundled in Port Placement extension)
- Reformat (loadable, built-in)
- Sample Data (scripted, built-in)
- Scene Performance (scripted, built-in)
- Simple Filters (scripted, built-in)
- Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)
- Threshold Scalar Volume (cli, built-in)
- Tractography Display (loadable, built-in)
- Transforms (loadable, built-in)
- Units (loadable, built-in)
- View Controllers (loadable, built-in)
- Volume Rendering (loadable, built-in)
- Volumes (loadable, built-in)
- Welcome (loadable, built-in)
Kitware)
- Finsler Backtracing (cli, bundled in Finsler Tractography extension)
- Finsler Tractography (cli, bundled in Finsler Tractography extension)
MGH
- Pk Modeling (cli, bundled in Pk Modeling extension)
Moka Creative, LLC, kumar.sunil.p@gmail.com
- Xnat Slicer (scripted, bundled in XNATSlicer extension)
MSC/NLM
- Label Object Statistics (scripted, bundled in IASEM extension)
- Simple Filters (scripted, built-in)
Noware
- Swiss Skull Stripper (cli, bundled in Swiss Skull Stripper extension)
Orobix
- Surface Toolbox (scripted, built-in)
PerkLab at Queen's University
- Py Dev Remote Debug (scripted, bundled in Py Dev Remote Debug extension)
PerkLab, Queen's
- Metafile Importer (loadable, bundled in Multidim Data extension)
- Sequence Browser (loadable, bundled in Multidim Data extension)
- Sequences (loadable, bundled in Multidim Data extension)
- Transforms (loadable, built-in)
PerkLab, Queen's University
- Matlab Commander (cli, bundled in Matlab Bridge extension)
- Matlab Module Generator (loadable, bundled in Matlab Bridge extension)
- Volume Clip With Model (scripted, bundled in Volume Clip extension)
PMH
- Colors Scalar Bar Self Test
- Sequence Browser (loadable, bundled in Multidim Data extension)
- Sequences (loadable, bundled in Multidim Data extension)
Queen's
- Data (loadable, built-in)
- Gel Dosimetry Analysis Algo (loadable, bundled in Gel Dosimetry Analysis extension)
- Subject Hierarchy (loadable, built-in)
- Subject Hierarchy Core Plugins Self Test
- Subject Hierarchy Generic Self Test
Queen's University
- Perk Evaluator (loadable, bundled in Perk Tutor extension)
- Python Metrics Calculator (scripted, bundled in Perk Tutor extension)
- Scoliosis Monitoring (scripted, bundled in Scoliosis extension)
- Spinal Curvature Measurement (scripted, bundled in Scoliosis extension)
- Transform Recorder (loadable, bundled in Perk Tutor extension)
- Volume Clip With Roi (scripted, bundled in Volume Clip extension)
- Workflow Segmentation (loadable, bundled in Perk Tutor extension)
Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto
- Matlab Commander (cli, bundled in Matlab Bridge extension)
- Matlab Module Generator (loadable, bundled in Matlab Bridge extension)
SAIC-Frederick, NCI-Frederick
- Volume Rendering (loadable, built-in)
SBU
- LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
SCI Institute
- Cleaver CLI (cli, bundled in Cleaver Extension extension)
Shiga University of Medical Science, Japan, SPL
- Percutaneous Approach Analysis (scripted, bundled in Percutaneous Approach Analysis extension)
SNR
- Tracker Stabilizer (loadable, bundled in Tracker Stabilizer extension)
SPL
- DICOM2Full Brain Tractography (scripted, built-in)
- Label To DICOMSEGConverter Self Test
- Percutaneous Approach Analysis (scripted, bundled in Percutaneous Approach Analysis extension)
- Pk Modeling (cli, bundled in Pk Modeling extension)
- Reporting Self Test
- Tracker Stabilizer (loadable, bundled in Tracker Stabilizer extension)
SPL B&W Harvard
SPL, BWH
- ACPCTransform (cli, built-in)
- Annotations (loadable, built-in)
- BSpline To Deformation Field (cli, built-in)
- Cast Scalar Volume (cli, built-in)
- Colors (loadable, built-in)
- Data (loadable, built-in)
- Diffusion Tensor Scalar Measurements (cli, built-in)
- Diffusion Weighted Volume Masking (cli, built-in)
- DTIexport (cli, built-in)
- DTIimport (cli, built-in)
- DWITo DTIEstimation (cli, built-in)
- Fiducial Registration (cli, built-in)
- Grayscale Model Maker (cli, built-in)
- Image Label Combine (cli, built-in)
- Mask Scalar Volume (cli, built-in)
- Merge Models (cli, built-in)
- Model Maker (cli, built-in)
- Models (loadable, built-in)
- Model To Label Map (cli, built-in)
- Multi Volume Explorer (loadable, built-in)
- Multi Volume Importer (scripted, built-in)
- N4ITKBias Field Correction (cli, built-in)
- PETStandard Uptake Value Computation (cli, built-in)
- PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
- Probe Volume With Model (cli, built-in)
- Reporting (loadable, bundled in Reporting extension)
- Robust Statistics Segmenter (cli, built-in)
- Scene Views (loadable, built-in)
- SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
- TCIABrowser (scripted, bundled in TCIABrowser extension)
- Test Grid Transform Registration (cli, built-in)
- Threshold Scalar Volume (cli, built-in)
- Tractography Label Map Seeding (cli, built-in)
- View Controllers (loadable, built-in)
- Volume Rendering (loadable, built-in)
- Volumes (loadable, built-in)
- Welcome (loadable, built-in)
SPL, BWH, UPenn
- Merge Models (cli, built-in)
Stony Brook University
- Carrera Slice Effect (scripted, bundled in Carrera Slice extension)
- Fast Grow Cut Effect (scripted, bundled in Fast Grow Cut Effect extension)
SUMS
- Corner Annotation (scripted, bundled in Corner Annotation extension)
Surgical Planning Lab
- Label To DICOMSEGConverter (scripted, bundled in Reporting extension)
UAB
- LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
- Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)
- Sobolev Segmenter (cli, bundled in Sobolev Segmenter extension)
Uiowa
- DWIConvert (cli, built-in)
UIowa
- DWIConvert (cli, built-in)
UNC
- DWIRician LMMSEFilter (cli, built-in)
- Extract Skeleton (cli, built-in)
- Intensity Segmenter (cli, bundled in Intensity Segmenter extension)
- Port Placement (scripted, bundled in Port Placement extension)
- Resample DTIVolume (cli, built-in)
- Resample Scalar Vector DWIVolume (cli, built-in)
Univ of Michigan
- Surface Registration (scripted, bundled in CMFreg extension)
Univ. of Iowa
University College Cork
- Airway Segmentation CLI (cli, bundled in Airway Segmentation extension)
University of Alabama Birmingham
- Carrera Slice Effect (scripted, bundled in Carrera Slice extension)
- Fast Grow Cut Effect (scripted, bundled in Fast Grow Cut Effect extension)
University of Heidelberg
- Longitudinal PETCT (loadable, bundled in Longitudinal PETCT extension)
University of Iowa
- PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
- SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
University of Iowa) and Andrey Fedorov (SPL
- Longitudinal PETCT (loadable, bundled in Longitudinal PETCT extension)
UPenn
- Annotations (loadable, built-in)
- EMSegment (loadable, built-in)
- N4ITKBias Field Correction (cli, built-in)
- Scene Views (loadable, built-in)
Utah
- Label Map Smoothing (cli, built-in)
- LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
- Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)
UVa
- DWIJoint Rician LMMSEFilter (cli, built-in)
- DWIRician LMMSEFilter (cli, built-in)
- DWIUnbiased Non Local Means Filter (cli, built-in)
UWA
- Thingiverse Browser (scripted, bundled in Thingiverse Browser extension)
WashU-St. Louis, dmarcus@wustl.edu
- Xnat Slicer (scripted, bundled in XNATSlicer extension)
while at GE
- Pk Modeling (cli, bundled in Pk Modeling extension)
Modules by contributing organization
62 contributing organizations:
- Asclepios INRIA
- AZE R&D
- Brigham and Women's Hospital
- BWH
- BWH, SPL
- BWH, SUMS
- BWH/UAB
- College of Information Engineering, Zhejiang University of Technology, Hangzhou, China); Xiaolei Chen, Jiashu Zhang(Department of Neurosurgery, PLA General Hospital, Beijing, China
- CRTC
- gatech
- GE
- Georgia Institute of Technology
- Georgia Tech
- IBM
- Isomics
- Isomics Inc.
- Isomics, Inc.
- Isomics, pieper@isomics.com
- Kitware
- Kitware)
- MGH
- Moka Creative, LLC, kumar.sunil.p@gmail.com
- MSC/NLM
- Noware
- Orobix
- Perk Lab at Queen's University
- Perk Lab, Queen's
- Perk Lab, Queen's University
- PMH
- Queen's
- Queen's University
- Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto
- SAIC-Frederick, NCI-Frederick
- SBU
- SCI Institute
- Shiga University of Medical Science, Japan, SPL
- SNR
- SPL
- SPL B&W Harvard
- SPL, BWH
- SPL, BWH, UPenn
- Stony Brook University
- SUMS
- Surgical Planning Lab
- UAB
- Uiowa
- UIowa
- UNC
- Univ of Michigan
- Univ. of Iowa
- University College Cork
- University of Alabama Birmingham
- University of Heidelberg
- University of Iowa
- University of Iowa) and Andrey Fedorov (SPL
- UPenn
- Utah
- UVa
- UWA
- Wash U-St. Louis, dmarcus@wustl.edu
- while at GE
Modules by contributing individual
163 contributing individuals:
- Alex Yarmarkovich
- Ali Ghayoor
- Allen Tannenbaum
- and Hans Johnson.
- Beatriz Paniagua from Department of Orthodontics
- Brad Davis
- BWH
- Carl-Fredrik Westin. The directional iterators were contributed by Luis Ibanez
- Daniel Haehn
- Demian Wassermann
- Dinggang Shen
- Francois Budin
- Greg Harris
- hans-johnson -at- uiowa.edu
- http://www.psychiatry.uiowa.edu
- Ivan Kolesov
- Kilian Pohl
- Lauren O'Donnell
- Liangjia Zhu
- Luping Fang
- Matt Lougheed
- Neuro Image Resarch and Analysis Laboratory
- Patricio Vela
- Peter Karasev
- Peter Savadjiev
- Polina Golland
- Qing Pan
- the University of North Carolina at Chapel Hill
- UNC Medical School
- Uof M School of Dentistry
- Uof M School Of Dentistry
- Xiaofeng Liu
- Yumin Yuan
- Akila Viswanathan
- Alan Morris
- Alex Yarmakovich
- Alex Yarmarkovich
- Ali Ghayoor
- Alireza Mehrtash
- Allen Tannenbaum
- and Ron Kikinis
- and Steve Pieper
- Andinet Enquobahrie
- Andras Lasso
- Andreas Freudling
- Andrey Fedorov
- Andriy Kot
- Anonymous
- Antonio Damato
- Antonio Tristan Vega
- Arie Nakhmani
- Atsushi Yamada
- Benjamin Long
- Bill Lorensen
- Bradley Lowekamp
- Bradley Lowekamp and Bill Lorensen
- Casey B Goodlett
- Charles Marion
- Csaba Pinter
- Dan Marcus
- Daniel Blezek
- Daniel Haehn
- Danny Perry
- Demian Wassermann
- Dirk Padfield
- Dominik Meier
- Ethan Ulrich
- Fotis Drakopoulos
- Francois Budin
- Franklin King
- Greg Gardner
- Guido Gerig
- Guillaume Pernelle
- Hans J. Johnson
- Hans Johnson
- Ivan Kolesov
- Jan Egger
- Jayender Jagadeesan
- Jean-Baptiste Berger
- Jean-Christophe Fillion-Robin
- Jim Miller
- Johan Andruejol
- John Evans
- Jonathan Bronson
- Josh Cates
- Joy Matsui
- Julien Finet
- Julien Jomier
- Junichi Tokuda
- Kent Williams
- Kevin Wang
- Kilian Pohl
- Koichiro Murakami
- Lauren Barber
- Lauren O'Donnell
- Laurent Chauvin
- Liang-Jia Zhu
- Liangjia Zhu
- Luca Antiga
- Luis G. Torres
- Marc Niethammer
- Marcel Prastawa prastawa@sci.utah.edu
- Mark Scully
- Markus Van Tol
- Martin Styner
- Matthew Holden
- Matthew S. Holden
- Matthew Woehlke
- Michael Jeulin-Lagarrigue
- Minjeong Kim
- Nabgha Fahrat
- Nicholas Herlambang
- Nick Tustison
- Nicole Aucoin
- Nigel Goh
- Nikos Chrisochoides
- Olivier Clatz
- Pat Marion
- Paul Mercea
- Pengdong Xiao
- Peter Black
- Peter Karasev
- Pierre Seroul
- Pietro Nardelli
- Raul San Jose
- Rob Mac Leod
- Ron Kikinis
- Ross Whitaker
- Ruifeng Chen
- Sam Song
- Sandy Wells
- Santiago Aja Fernandez
- Sebastien Barré
- Sebastien Barre
- Shigeyuki Naka
- Soichiro Tani
- Sonia Pujol
- Stephen Aylward
- Stephen R Aylward
- Steve Pieper
- Sunil Kumar
- Sylvain Bouix
- Tamas Ungi
- This tool was developed by Hans J. Johnson and Greg Harris.
- This tool was developed by Hans Johnson.
- This tool was developed by Kent Williams.
- This tool was developed by Vincent Magnotta
- Tina Kapur
- Tobias Penzkofer
- Tohru Tani
- Vince Magnotta
- Vincent A. Magnotta
- Vinicius Boen
- Vinicius Boen and Mason Winsauer
- Wendy Plesniak
- Xiaodong Tao
- Xiaojun Chen
- Yanling Liu
- Yi Gao
- Yinglin Lee
- Yingxuan Zhu
- Yixun Liu
- Yong Zhang
Alex Yarmarkovich
- Finsler Backtracing (cli, bundled in Finsler Tractography extension)
- Finsler Tractography (cli, bundled in Finsler Tractography extension)
Ali Ghayoor
- BRAINSTransform Convert (cli, built-in)
Allen Tannenbaum
- Carrera Slice Effect (scripted, bundled in Carrera Slice extension)
- Fast Grow Cut Effect (scripted, bundled in Fast Grow Cut Effect extension)
and Hans Johnson.
- BRAINSResample (cli, built-in)
Beatriz Paniagua from Department of Orthodontics
- Intensity Segmenter (cli, bundled in Intensity Segmenter extension)
Brad Davis
- EMSegment Command Line (cli, built-in)
BWH
- DICOMSegmentation Plugin
- Multi Volume Importer Plugin
Carl-Fredrik Westin. The directional iterators were contributed by Luis Ibanez
- Finsler Backtracing (cli, bundled in Finsler Tractography extension)
- Finsler Tractography (cli, bundled in Finsler Tractography extension)
Daniel Haehn
- EMSegment Command Line (cli, built-in)
Demian Wassermann
- Finsler Backtracing (cli, bundled in Finsler Tractography extension)
- Finsler Tractography (cli, bundled in Finsler Tractography extension)
Dinggang Shen
- IGR3D MABMIS Testing (cli, bundled in MABMIS extension)
- IGR3D MABMIS Training (cli, bundled in MABMIS extension)
Francois Budin
- Intensity Segmenter (cli, bundled in Intensity Segmenter extension)
Greg Harris
- BRAINSResample (cli, built-in)
hans-johnson -at- uiowa.edu
- BRAINSFit (cli, built-in)
- BRAINSROIAuto (cli, built-in)
http://www.psychiatry.uiowa.edu
- BRAINSFit (cli, built-in)
- BRAINSROIAuto (cli, built-in)
Ivan Kolesov
- Fast Grow Cut Effect (scripted, bundled in Fast Grow Cut Effect extension)
Kilian Pohl
- EMSegment (loadable, built-in)
- EMSegment Command Line (cli, built-in)
Lauren O'Donnell
- Fiber Bundle Label Select (cli, built-in)
Liangjia Zhu
- Carrera Slice Effect (scripted, bundled in Carrera Slice extension)
Luping Fang
- Gyro Guide (scripted, bundled in Gyro Guide extension)
Matt Lougheed
- Volume Clip With Model (scripted, bundled in Volume Clip extension)
Neuro Image Resarch and Analysis Laboratory
- Apply Matrix (cli, bundled in CMFreg extension)
- Downsize (cli, bundled in CMFreg extension)
- Growing (cli, bundled in CMFreg extension)
- Label Addition (cli, bundled in CMFreg extension)
- Label Extraction (cli, bundled in CMFreg extension)
- Mask Creation (cli, bundled in CMFreg extension)
- Non Growing (cli, bundled in CMFreg extension)
Patricio Vela
- Carrera Slice Effect (scripted, bundled in Carrera Slice extension)
Peter Karasev
- Carrera Slice (loadable, bundled in Carrera Slice extension)
Peter Savadjiev
- Finsler Backtracing (cli, bundled in Finsler Tractography extension)
- Finsler Tractography (cli, bundled in Finsler Tractography extension)
Polina Golland
- EMSegment Command Line (cli, built-in)
Qing Pan
- Gyro Guide (scripted, bundled in Gyro Guide extension)
the University of North Carolina at Chapel Hill
- Intensity Segmenter (cli, bundled in Intensity Segmenter extension)
UNC Medical School
- Apply Matrix (cli, bundled in CMFreg extension)
- Downsize (cli, bundled in CMFreg extension)
- Growing (cli, bundled in CMFreg extension)
- Label Addition (cli, bundled in CMFreg extension)
- Label Extraction (cli, bundled in CMFreg extension)
- Mask Creation (cli, bundled in CMFreg extension)
- Non Growing (cli, bundled in CMFreg extension)
UofM School of Dentistry
- Apply Matrix (cli, bundled in CMFreg extension)
- Downsize (cli, bundled in CMFreg extension)
- Label Addition (cli, bundled in CMFreg extension)
- Label Extraction (cli, bundled in CMFreg extension)
- Mask Creation (cli, bundled in CMFreg extension)
- Non Growing (cli, bundled in CMFreg extension)
UofM School Of Dentistry
Xiaofeng Liu
- IGR3D MABMIS Testing (cli, bundled in MABMIS extension)
- IGR3D MABMIS Training (cli, bundled in MABMIS extension)
Yumin Yuan
- EMSegment Command Line (cli, built-in)
Akila Viswanathan
- i Gyne (scripted, bundled in i Gyne extension)
- Needle Finder (scripted, bundled in Needle Finder extension)
Alan Morris
- LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
- Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)
Alex Yarmakovich
- Models (loadable, built-in)
- Tractography Interactive Seeding (loadable, built-in)
Alex Yarmarkovich
- Data (loadable, built-in)
- Image Label Combine (cli, built-in)
- Transforms (loadable, built-in)
- Volume Rendering (loadable, built-in)
- Volumes (loadable, built-in)
Ali Ghayoor
- Perform Metric Test (cli, built-in)
Alireza Mehrtash
- i Gyne (scripted, bundled in i Gyne extension)
- Needle Finder (scripted, bundled in Needle Finder extension)
- TCIABrowser (scripted, bundled in TCIABrowser extension)
Allen Tannenbaum
- LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
- Robust Statistics Segmenter (cli, built-in)
- Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)
- Sobolev Segmenter (cli, bundled in Sobolev Segmenter extension)
and Ron Kikinis
- Fast Grow Cut Effect (scripted, bundled in Fast Grow Cut Effect extension)
and Steve Pieper
- Carrera Slice Effect (scripted, bundled in Carrera Slice extension)
Andinet Enquobahrie
- Port Placement (scripted, bundled in Port Placement extension)
Andras Lasso
- Matlab Commander (cli, bundled in Matlab Bridge extension)
- Matlab Module Generator (loadable, bundled in Matlab Bridge extension)
- Metafile Importer (loadable, bundled in Multidim Data extension)
- Py Dev Remote Debug (scripted, bundled in Py Dev Remote Debug extension)
- Sequence Browser (loadable, bundled in Multidim Data extension)
- Sequences (loadable, bundled in Multidim Data extension)
- Transforms (loadable, built-in)
- Volume Clip With Model (scripted, bundled in Volume Clip extension)
- Volume Clip With Roi (scripted, bundled in Volume Clip extension)
Andreas Freudling
- Volume Rendering (loadable, built-in)
Andrey Fedorov
- Body Centric Cubic Mesh (cli, bundled in CBC 3D I2MConversion extension)
- BSpline To Deformation Field (cli, built-in)
- Change Tracker (scripted, bundled in Change Tracker extension)
- Change Tracker Self Test
- Crop Volume (loadable, built-in)
- DICOMRWVMPlugin
- DICOMSegmentation Plugin
- Intensity Difference Metric (cli, bundled in Change Tracker extension)
- Label To DICOMSEGConverter (scripted, bundled in Reporting extension)
- Label To DICOMSEGConverter Self Test
- Mesh Compression (cli, bundled in CBC 3D I2MConversion extension)
- Multi Volume Explorer (loadable, built-in)
- Multi Volume Importer (scripted, built-in)
- Multi Volume Importer Plugin
- N4ITKBias Field Correction (cli, built-in)
- PBNRR (cli, bundled in PBNRR extension)
- Pk Modeling (cli, bundled in Pk Modeling extension)
- Reporting (loadable, bundled in Reporting extension)
- Reporting Self Test
- SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
- TCIABrowser (scripted, bundled in TCIABrowser extension)
- Window Level Effect (scripted, bundled in Window Level Effect extension)
Andriy Kot
Anonymous
- CLIROITest (cli, built-in)
- EMSegment Transform To New Format (cli, built-in)
Antonio Damato
- i Gyne (scripted, bundled in i Gyne extension)
- Needle Finder (scripted, bundled in Needle Finder extension)
Antonio Tristan Vega
- DWIJoint Rician LMMSEFilter (cli, built-in)
- DWIRician LMMSEFilter (cli, built-in)
- DWIUnbiased Non Local Means Filter (cli, built-in)
- Finsler Backtracing (cli, bundled in Finsler Tractography extension)
- Finsler Tractography (cli, bundled in Finsler Tractography extension)
Arie Nakhmani
- Sobolev Segmenter (cli, bundled in Sobolev Segmenter extension)
Atsushi Yamada
- Corner Annotation (scripted, bundled in Corner Annotation extension)
Benjamin Long
- Sample Data (scripted, built-in)
Bill Lorensen
- Add Scalar Volumes (cli, built-in)
- Checker Board Filter (cli, built-in)
- Create DICOMSeries (cli, built-in)
- Curvature Anisotropic Diffusion (cli, built-in)
- Diffusion Tensor Test (cli, built-in)
- Execution Model Tour (cli, built-in)
- Gradient Anisotropic Diffusion (cli, built-in)
- Grayscale Fill Hole Image Filter (cli, built-in)
- Grayscale Grind Peak Image Filter (cli, built-in)
- Grayscale Model Maker (cli, built-in)
- Histogram Matching (cli, built-in)
- Median Image Filter (cli, built-in)
- Model Maker (cli, built-in)
- Multiply Scalar Volumes (cli, built-in)
- Orient Scalar Volume (cli, built-in)
- Otsu Threshold Image Filter (cli, built-in)
- Resample Scalar Volume (cli, built-in)
- Subtract Scalar Volumes (cli, built-in)
- Swiss Skull Stripper (cli, bundled in Swiss Skull Stripper extension)
- Voting Binary Hole Filling Image Filter (cli, built-in)
Bradley Lowekamp
- Bin Shrink (cli, bundled in IASEM extension)
- Double Threshold Effect (scripted, bundled in IASEM extension)
- IASEMImport (cli, bundled in IASEM extension)
- IASEMImport Series (cli, bundled in IASEM extension)
- Label Object Statistics (scripted, bundled in IASEM extension)
- Simple Filters (scripted, built-in)
Bradley Lowekamp and Bill Lorensen
- Spacing Aware Curvature Diffusion (cli, bundled in IASEM extension)
Casey B Goodlett
- Expert Automated Registration (cli, built-in)
- Fiducial Registration (cli, built-in)
Charles Marion
- Data Store (loadable, built-in)
Csaba Pinter
- Data (loadable, built-in)
- Gel Dosimetry Analysis Algo (loadable, bundled in Gel Dosimetry Analysis extension)
- Subject Hierarchy (loadable, built-in)
- Subject Hierarchy Core Plugins Self Test
- Subject Hierarchy Generic Self Test
Dan Marcus
- Xnat Slicer (scripted, bundled in XNATSlicer extension)
Daniel Blezek
- Execution Model Tour (cli, built-in)
Daniel Haehn
- Annotations (loadable, built-in)
- EMSegment (loadable, built-in)
- Merge Models (cli, built-in)
- Scene Views (loadable, built-in)
Danny Perry
- LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
- Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)
Demian Wassermann
- DICOM2Full Brain Tractography (scripted, built-in)
- Diffusion Weighted Volume Masking (cli, built-in)
- Fiber Bundle Label Select (cli, built-in)
- test tractography display
- Tractography Label Map Seeding (cli, built-in)
Dirk Padfield
- Label Map Smoothing (cli, built-in)
Dominik Meier
- Fiducial Registration (cli, built-in)
Ethan Ulrich
- DICOMPETSUVPlugin
- DICOMRWVMPlugin
- SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
Fotis Drakopoulos
- Body Centric Cubic Mesh (cli, bundled in CBC 3D I2MConversion extension)
- Mesh Compression (cli, bundled in CBC 3D I2MConversion extension)
- PBNRR (cli, bundled in PBNRR extension)
Francois Budin
- Resample DTIVolume (cli, built-in)
- Resample Scalar Vector DWIVolume (cli, built-in)
Franklin King
- Scoliosis Monitoring (scripted, bundled in Scoliosis extension)
- Spinal Curvature Measurement (scripted, bundled in Scoliosis extension)
- Transforms (loadable, built-in)
Greg Gardner
- LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
- Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)
Guido Gerig
- Extract Skeleton (cli, built-in)
Guillaume Pernelle
- i Gyne (scripted, bundled in i Gyne extension)
- Needle Finder (scripted, bundled in Needle Finder extension)
Hans J. Johnson
- BRAINSFit (cli, built-in)
- BRAINSROIAuto (cli, built-in)
- BRAINSTransform Convert (cli, built-in)
Hans Johnson
- DWIConvert (cli, built-in)
- PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
- SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
Ivan Kolesov
- Carrera Slice (loadable, bundled in Carrera Slice extension)
- Carrera Slice Effect (scripted, bundled in Carrera Slice extension)
Jan Egger
Jayender Jagadeesan
- Tracker Stabilizer (loadable, bundled in Tracker Stabilizer extension)
Jean-Baptiste Berger
- Data Store (loadable, built-in)
Jean-Christophe Fillion-Robin
- CLI4Test
- Data Store (loadable, built-in)
- Fast Grow Cut (loadable, bundled in Fast Grow Cut Effect extension)
- Fast Grow Cut Segmenter (loadable, bundled in Carrera Slice extension)
- fiber visibility crash2438
- label Toggle Bug2049
- Matlab Commander (cli, bundled in Matlab Bridge extension)
- Matlab Module Generator (loadable, bundled in Matlab Bridge extension)
- Multi Volume Explorer (loadable, built-in)
- Multi Volume Importer (scripted, built-in)
- Sample Data (scripted, built-in)
- Simple Filters (scripted, built-in)
- Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)
- Transforms (loadable, built-in)
- View Controllers (loadable, built-in)
- Welcome (loadable, built-in)
Jim Miller
- Charting (scripted, built-in)
- Pk Modeling (cli, bundled in Pk Modeling extension)
- Simple Region Growing Segmentation (cli, built-in)
- Slice Link Logic (scripted, built-in)
- Slicer4Minute (scripted, built-in)
- View Controllers (loadable, built-in)
- View Controllers Slice Interpolation Bug1926
Johan Andruejol
- Units (loadable, built-in)
John Evans
- Pk Modeling (cli, bundled in Pk Modeling extension)
Jonathan Bronson
- Cleaver CLI (cli, bundled in Cleaver Extension extension)
Josh Cates
- Label Map Smoothing (cli, built-in)
- LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
- Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)
Joy Matsui
- DWIConvert (cli, built-in)
Julien Finet
- Cameras (loadable, built-in)
- Colors (loadable, built-in)
- Data (loadable, built-in)
- Double Arrays (loadable, built-in)
- Event Broker
- Image Maker (cli, bundled in Image Maker extension)
- Models (loadable, built-in)
- Multi Volume Explorer (loadable, built-in)
- Multi Volume Importer (scripted, built-in)
- Scene Performance (scripted, built-in)
- Threshold Scalar Volume (cli, built-in)
- Tractography Display (loadable, built-in)
- Transforms (loadable, built-in)
- Units (loadable, built-in)
- Volume Rendering (loadable, built-in)
- Volumes (loadable, built-in)
Julien Jomier
- Gaussian Blur Image Filter (cli, built-in)
Junichi Tokuda
- Corner Annotation (scripted, bundled in Corner Annotation extension)
- Curve Maker (scripted, bundled in Curve Maker extension)
- Dilate Label (cli, bundled in Erode Dilate Label extension)
- Erode Label (cli, bundled in Erode Dilate Label extension)
- Percutaneous Approach Analysis (scripted, bundled in Percutaneous Approach Analysis extension)
Kent Williams
- BRAINSTransform Convert (cli, built-in)
- DWIConvert (cli, built-in)
Kevin Wang
- Colors Scalar Bar Self Test
- Matlab Commander (cli, bundled in Matlab Bridge extension)
- Matlab Module Generator (loadable, bundled in Matlab Bridge extension)
- Sequence Browser (loadable, bundled in Multidim Data extension)
- Sequences (loadable, bundled in Multidim Data extension)
Kilian Pohl
- Annotations (loadable, built-in)
- Change Tracker (scripted, bundled in Change Tracker extension)
- Scene Views (loadable, built-in)
Koichiro Murakami
- Corner Annotation (scripted, bundled in Corner Annotation extension)
- Percutaneous Approach Analysis (scripted, bundled in Percutaneous Approach Analysis extension)
Lauren Barber
- i Gyne (scripted, bundled in i Gyne extension)
- Needle Finder (scripted, bundled in Needle Finder extension)
Lauren O'Donnell
- Probe Volume With Model (cli, built-in)
Laurent Chauvin
- Curve Maker (scripted, bundled in Curve Maker extension)
- Dice Computation (loadable, bundled in Dice Computation extension)
- Percutaneous Approach Analysis (scripted, bundled in Percutaneous Approach Analysis extension)
- Tracker Stabilizer (loadable, bundled in Tracker Stabilizer extension)
Liang-Jia Zhu
- Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)
Liangjia Zhu
- Fast Grow Cut Effect (scripted, bundled in Fast Grow Cut Effect extension)
- LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
Luca Antiga
- Surface Toolbox (scripted, built-in)
Luis G. Torres
- Port Placement (scripted, bundled in Port Placement extension)
Marc Niethammer
- DWIRician LMMSEFilter (cli, built-in)
Marcel Prastawa prastawa@sci.utah.edu
Mark Scully
- DWIConvert (cli, built-in)
Markus Van Tol
- Longitudinal PETCT (loadable, bundled in Longitudinal PETCT extension)
- PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
- SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
Martin Styner
- Extract Skeleton (cli, built-in)
Matthew Holden
- Metafile Importer (loadable, bundled in Multidim Data extension)
- Python Metrics Calculator (scripted, bundled in Perk Tutor extension)
- Sequence Browser (loadable, bundled in Multidim Data extension)
- Sequences (loadable, bundled in Multidim Data extension)
Matthew S. Holden
- Perk Evaluator (loadable, bundled in Perk Tutor extension)
- Transform Recorder (loadable, bundled in Perk Tutor extension)
- Workflow Segmentation (loadable, bundled in Perk Tutor extension)
Matthew Woehlke
- Extension Wizard (scripted, built-in)
Michael Jeulin-Lagarrigue
- Reformat (loadable, built-in)
Minjeong Kim
- IGR3D MABMIS Testing (cli, bundled in MABMIS extension)
- IGR3D MABMIS Training (cli, bundled in MABMIS extension)
Nabgha Fahrat
- i Gyne (scripted, bundled in i Gyne extension)
- Needle Finder (scripted, bundled in Needle Finder extension)
Nicholas Herlambang
- JRC2013Vis
Nick Tustison
- N4ITKBias Field Correction (cli, built-in)
Nicole Aucoin
- ACPCTransform (cli, built-in)
- Add Many Markups Fiducial Test
- Annotations (loadable, built-in)
- Cast Scalar Volume (cli, built-in)
- Colors (loadable, built-in)
- Colors Scalar Bar Self Test
- Data (loadable, built-in)
- Fiducial Layout Switch Bug1914
- Grayscale Model Maker (cli, built-in)
- Markups (loadable, built-in)
- Markups In Compare Viewers Self Test
- Markups In Views Self Test
- Mask Scalar Volume (cli, built-in)
- Merge Models (cli, built-in)
- Model Maker (cli, built-in)
- Models (loadable, built-in)
- Model To Label Map (cli, built-in)
- Neurosurgical Planning Tutorial Markups Self Test
- PETStandard Uptake Value Computation (cli, built-in)
- PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
- Reporting (loadable, bundled in Reporting extension)
- Scene Views (loadable, built-in)
- SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
- Threshold Scalar Volume (cli, built-in)
- Volume Rendering Scene Close (scripted, built-in)
- Volumes (loadable, built-in)
Nigel Goh
- Thingiverse Browser (scripted, bundled in Thingiverse Browser extension)
Nikos Chrisochoides
- Body Centric Cubic Mesh (cli, bundled in CBC 3D I2MConversion extension)
- Mesh Compression (cli, bundled in CBC 3D I2MConversion extension)
- PBNRR (cli, bundled in PBNRR extension)
Olivier Clatz
Pat Marion
- Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)
Paul Mercea
- Longitudinal PETCT (loadable, bundled in Longitudinal PETCT extension)
Pengdong Xiao
- Intensity Segmenter (cli, bundled in Intensity Segmenter extension)
Peter Black
- Change Tracker (scripted, bundled in Change Tracker extension)
Peter Karasev
- Carrera Slice Effect (scripted, bundled in Carrera Slice extension)
Pierre Seroul
- Extract Skeleton (cli, built-in)
Pietro Nardelli
- Airway Segmentation CLI (cli, bundled in Airway Segmentation extension)
Raul San Jose
- Diffusion Tensor Scalar Measurements (cli, built-in)
- DWITo DTIEstimation (cli, built-in)
- Tractography Label Map Seeding (cli, built-in)
Rob MacLeod
- LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
- Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)
Ron Kikinis
- ACPCTransform (cli, built-in)
- Cast Scalar Volume (cli, built-in)
- Change Tracker (scripted, bundled in Change Tracker extension)
- Crop Volume (loadable, built-in)
- Mask Scalar Volume (cli, built-in)
- Merge Models (cli, built-in)
- Model Maker (cli, built-in)
- Multi Volume Explorer (loadable, built-in)
- Multi Volume Importer (scripted, built-in)
- N4ITKBias Field Correction (cli, built-in)
- PETStandard Uptake Value Computation (cli, built-in)
- PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
- Robust Statistics Segmenter (cli, built-in)
- Surface Toolbox (scripted, built-in)
- SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
- Threshold Scalar Volume (cli, built-in)
- View Controllers (loadable, built-in)
- Volume Rendering (loadable, built-in)
Ross Whitaker
- Label Map Smoothing (cli, built-in)
Ruifeng Chen
- Gyro Guide (scripted, bundled in Gyro Guide extension)
Sam Song
Sandy Wells
- i Gyne (scripted, bundled in i Gyne extension)
- Needle Finder (scripted, bundled in Needle Finder extension)
Santiago Aja Fernandez
- DWIJoint Rician LMMSEFilter (cli, built-in)
- DWIRician LMMSEFilter (cli, built-in)
- DWIUnbiased Non Local Means Filter (cli, built-in)
Sebastien Barré
- Cameras (loadable, built-in)
Sebastien Barre
- EMSegment Command Line (cli, built-in)
Shigeyuki Naka
- Corner Annotation (scripted, bundled in Corner Annotation extension)
Soichiro Tani
- Corner Annotation (scripted, bundled in Corner Annotation extension)
Sonia Pujol
- Dice Computation (loadable, bundled in Dice Computation extension)
- DTIexport (cli, built-in)
- DTIimport (cli, built-in)
Stephen Aylward
- Extract Skeleton (cli, built-in)
- Gaussian Blur Image Filter (cli, built-in)
Stephen R Aylward
- Expert Automated Registration (cli, built-in)
Steve Pieper
- Atlas Tests
- Binary Watershed Effect (scripted, bundled in IASEM extension)
- Compare Volumes (scripted, bundled in CMFreg extension)
- Data Probe (scripted, built-in)
- DICOM (scripted, built-in)
- DICOMDiffusion Volume Plugin
- DICOMLongitudinal PETCTPlugin
- DICOMScalar Volume Plugin
- DICOMSlicer Data Bundle Plugin
- Editor (scripted, built-in)
- Endoscopy (scripted, built-in)
- fiber visibility crash2438
- Fiber Bundle To Label Map (scripted, built-in)
- Label Statistics (scripted, built-in)
- label Toggle Bug2049
- Landmark Registration (scripted, bundled in CMFreg extension)
- Multi Volume Explorer (loadable, built-in)
- Multi Volume Importer (scripted, built-in)
- Performance Tests
- Reporting (loadable, bundled in Reporting extension)
- RSNA2012Prostate Demo
- RSNAQuant Tutorial
- RSNAVis Tutorial
- Sample Data (scripted, built-in)
- scene Import2428
- Self Tests
- Simple Filters (scripted, built-in)
- slicer Close Crash Bug2590
- Slicer MRBTest
- Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)
- Threshold Threading Test
- Vector To Scalar Volume (scripted, built-in)
- View Controllers (loadable, built-in)
- Volumes (loadable, built-in)
- Xnat Slicer (scripted, bundled in XNATSlicer extension)
Sunil Kumar
- Xnat Slicer (scripted, bundled in XNATSlicer extension)
Sylvain Bouix
- Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)
Tamas Ungi
- Perk Evaluator (loadable, bundled in Perk Tutor extension)
- Python Metrics Calculator (scripted, bundled in Perk Tutor extension)
- Scoliosis Monitoring (scripted, bundled in Scoliosis extension)
- Spinal Curvature Measurement (scripted, bundled in Scoliosis extension)
- Transform Recorder (loadable, bundled in Perk Tutor extension)
- Workflow Segmentation (loadable, bundled in Perk Tutor extension)
This tool was developed by Hans J. Johnson and Greg Harris.
- BRAINSDemon Warp (cli, built-in)
- VBRAINSDemon Warp (cli, built-in)
This tool was developed by Hans Johnson.
- BRAINSResize (cli, built-in)
This tool was developed by Kent Williams.
- BRAINSDWICleanup (cli, built-in)
This tool was developed by Vincent Magnotta
- BRAINSResample (cli, built-in)
Tina Kapur
- i Gyne (scripted, bundled in i Gyne extension)
- Needle Finder (scripted, bundled in Needle Finder extension)
Tobias Penzkofer
Tohru Tani
- Corner Annotation (scripted, bundled in Corner Annotation extension)
Vince Magnotta
- DWIConvert (cli, built-in)
Vincent A. Magnotta
- BRAINSLabel Stats (cli, built-in)
Vinicius Boen
- Surface Registration (scripted, bundled in CMFreg extension)
Vinicius Boen and Mason Winsauer
- Apply Matrix (cli, bundled in CMFreg extension)
- Downsize (cli, bundled in CMFreg extension)
- Growing (cli, bundled in CMFreg extension)
- Label Addition (cli, bundled in CMFreg extension)
- Label Extraction (cli, bundled in CMFreg extension)
- Mask Creation (cli, bundled in CMFreg extension)
- Non Growing (cli, bundled in CMFreg extension)
Wendy Plesniak
- Annotations (loadable, built-in)
- PETStandard Uptake Value Computation (cli, built-in)
- PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
- Scene Views (loadable, built-in)
- SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
- View Controllers (loadable, built-in)
- Welcome (loadable, built-in)
Xiaodong Tao
- DWIConvert (cli, built-in)
- Model To Label Map (cli, built-in)
Xiaojun Chen
Yanling Liu
- Volume Rendering (loadable, built-in)
Yi Gao
- Carrera Slice Effect (scripted, bundled in Carrera Slice extension)
- Fast Grow Cut Effect (scripted, bundled in Fast Grow Cut Effect extension)
- i Gyne (scripted, bundled in i Gyne extension)
- LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
- Needle Finder (scripted, bundled in Needle Finder extension)
- Robust Statistics Segmenter (cli, built-in)
- Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)
Yinglin Lee
- Test Grid Transform Registration (cli, built-in)
Yingxuan Zhu
- Pk Modeling (cli, bundled in Pk Modeling extension)
Yixun Liu
- Body Centric Cubic Mesh (cli, bundled in CBC 3D I2MConversion extension)
- Mesh Compression (cli, bundled in CBC 3D I2MConversion extension)
- PBNRR (cli, bundled in PBNRR extension)
Yong Zhang
- Annotations (loadable, built-in)
Modules by contributing individual
163 contributing individuals:
- Alex Yarmarkovich
- Ali Ghayoor
- Allen Tannenbaum
- and Hans Johnson.
- Beatriz Paniagua from Department of Orthodontics
- Brad Davis
- BWH
- Carl-Fredrik Westin. The directional iterators were contributed by Luis Ibanez
- Daniel Haehn
- Demian Wassermann
- Dinggang Shen
- Francois Budin
- Greg Harris
- hans-johnson -at- uiowa.edu
- http://www.psychiatry.uiowa.edu
- Ivan Kolesov
- Kilian Pohl
- Lauren O'Donnell
- Liangjia Zhu
- Luping Fang
- Matt Lougheed
- Neuro Image Resarch and Analysis Laboratory
- Patricio Vela
- Peter Karasev
- Peter Savadjiev
- Polina Golland
- Qing Pan
- the University of North Carolina at Chapel Hill
- UNC Medical School
- Uof M School of Dentistry
- Uof M School Of Dentistry
- Xiaofeng Liu
- Yumin Yuan
- Akila Viswanathan
- Alan Morris
- Alex Yarmakovich
- Alex Yarmarkovich
- Ali Ghayoor
- Alireza Mehrtash
- Allen Tannenbaum
- and Ron Kikinis
- and Steve Pieper
- Andinet Enquobahrie
- Andras Lasso
- Andreas Freudling
- Andrey Fedorov
- Andriy Kot
- Anonymous
- Antonio Damato
- Antonio Tristan Vega
- Arie Nakhmani
- Atsushi Yamada
- Benjamin Long
- Bill Lorensen
- Bradley Lowekamp
- Bradley Lowekamp and Bill Lorensen
- Casey B Goodlett
- Charles Marion
- Csaba Pinter
- Dan Marcus
- Daniel Blezek
- Daniel Haehn
- Danny Perry
- Demian Wassermann
- Dirk Padfield
- Dominik Meier
- Ethan Ulrich
- Fotis Drakopoulos
- Francois Budin
- Franklin King
- Greg Gardner
- Guido Gerig
- Guillaume Pernelle
- Hans J. Johnson
- Hans Johnson
- Ivan Kolesov
- Jan Egger
- Jayender Jagadeesan
- Jean-Baptiste Berger
- Jean-Christophe Fillion-Robin
- Jim Miller
- Johan Andruejol
- John Evans
- Jonathan Bronson
- Josh Cates
- Joy Matsui
- Julien Finet
- Julien Jomier
- Junichi Tokuda
- Kent Williams
- Kevin Wang
- Kilian Pohl
- Koichiro Murakami
- Lauren Barber
- Lauren O'Donnell
- Laurent Chauvin
- Liang-Jia Zhu
- Liangjia Zhu
- Luca Antiga
- Luis G. Torres
- Marc Niethammer
- Marcel Prastawa prastawa@sci.utah.edu
- Mark Scully
- Markus Van Tol
- Martin Styner
- Matthew Holden
- Matthew S. Holden
- Matthew Woehlke
- Michael Jeulin-Lagarrigue
- Minjeong Kim
- Nabgha Fahrat
- Nicholas Herlambang
- Nick Tustison
- Nicole Aucoin
- Nigel Goh
- Nikos Chrisochoides
- Olivier Clatz
- Pat Marion
- Paul Mercea
- Pengdong Xiao
- Peter Black
- Peter Karasev
- Pierre Seroul
- Pietro Nardelli
- Raul San Jose
- Rob Mac Leod
- Ron Kikinis
- Ross Whitaker
- Ruifeng Chen
- Sam Song
- Sandy Wells
- Santiago Aja Fernandez
- Sebastien Barré
- Sebastien Barre
- Shigeyuki Naka
- Soichiro Tani
- Sonia Pujol
- Stephen Aylward
- Stephen R Aylward
- Steve Pieper
- Sunil Kumar
- Sylvain Bouix
- Tamas Ungi
- This tool was developed by Hans J. Johnson and Greg Harris.
- This tool was developed by Hans Johnson.
- This tool was developed by Kent Williams.
- This tool was developed by Vincent Magnotta
- Tina Kapur
- Tobias Penzkofer
- Tohru Tani
- Vince Magnotta
- Vincent A. Magnotta
- Vinicius Boen
- Vinicius Boen and Mason Winsauer
- Wendy Plesniak
- Xiaodong Tao
- Xiaojun Chen
- Yanling Liu
- Yi Gao
- Yinglin Lee
- Yingxuan Zhu
- Yixun Liu
- Yong Zhang
Modules by type
3 types:
cli
- ABC (cli, bundled in ABC extension)
- ACPCTransform (cli, built-in)
- Add Scalar Volumes (cli, built-in)
- Airway Segmentation CLI (cli, bundled in Airway Segmentation extension)
- Apply Matrix (cli, bundled in CMFreg extension)
- Bin Shrink (cli, bundled in IASEM extension)
- Body Centric Cubic Mesh (cli, bundled in CBC 3D I2MConversion extension)
- BRAINSDemon Warp (cli, built-in)
- BRAINSDWICleanup (cli, built-in)
- BRAINSFit (cli, built-in)
- BRAINSLabel Stats (cli, built-in)
- BRAINSResample (cli, built-in)
- BRAINSResize (cli, built-in)
- BRAINSROIAuto (cli, built-in)
- BRAINSTransform Convert (cli, built-in)
- BSpline To Deformation Field (cli, built-in)
- Cast Scalar Volume (cli, built-in)
- Checker Board Filter (cli, built-in)
- Cleaver CLI (cli, bundled in Cleaver Extension extension)
- CLIROITest (cli, built-in)
- Create DICOMSeries (cli, built-in)
- Curvature Anisotropic Diffusion (cli, built-in)
- Diffusion Tensor Scalar Measurements (cli, built-in)
- Diffusion Tensor Test (cli, built-in)
- Diffusion Weighted Volume Masking (cli, built-in)
- Dilate Label (cli, bundled in Erode Dilate Label extension)
- Downsize (cli, bundled in CMFreg extension)
- DTIexport (cli, built-in)
- DTIimport (cli, built-in)
- DWIConvert (cli, built-in)
- DWIJoint Rician LMMSEFilter (cli, built-in)
- DWIRician LMMSEFilter (cli, built-in)
- DWITo DTIEstimation (cli, built-in)
- DWIUnbiased Non Local Means Filter (cli, built-in)
- EMSegment Command Line (cli, built-in)
- EMSegment Transform To New Format (cli, built-in)
- Erode Label (cli, bundled in Erode Dilate Label extension)
- Execution Model Tour (cli, built-in)
- Expert Automated Registration (cli, built-in)
- Extract Skeleton (cli, built-in)
- Fiber Bundle Label Select (cli, built-in)
- Fiducial Registration (cli, built-in)
- Finsler Backtracing (cli, bundled in Finsler Tractography extension)
- Finsler Tractography (cli, bundled in Finsler Tractography extension)
- Gaussian Blur Image Filter (cli, built-in)
- Gradient Anisotropic Diffusion (cli, built-in)
- Grayscale Fill Hole Image Filter (cli, built-in)
- Grayscale Grind Peak Image Filter (cli, built-in)
- Grayscale Model Maker (cli, built-in)
- Growing (cli, bundled in CMFreg extension)
- Histogram Matching (cli, built-in)
- IASEMImport (cli, bundled in IASEM extension)
- IASEMImport Series (cli, bundled in IASEM extension)
- IGR3D MABMIS Testing (cli, bundled in MABMIS extension)
- IGR3D MABMIS Training (cli, bundled in MABMIS extension)
- Image Label Combine (cli, built-in)
- Image Maker (cli, bundled in Image Maker extension)
- Intensity Difference Metric (cli, bundled in Change Tracker extension)
- Intensity Segmenter (cli, bundled in Intensity Segmenter extension)
- Label Addition (cli, bundled in CMFreg extension)
- Label Extraction (cli, bundled in CMFreg extension)
- Label Map Smoothing (cli, built-in)
- LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
- Mask Creation (cli, bundled in CMFreg extension)
- Mask Scalar Volume (cli, built-in)
- Matlab Commander (cli, bundled in Matlab Bridge extension)
- Median Image Filter (cli, built-in)
- Merge Models (cli, built-in)
- Mesh Compression (cli, bundled in CBC 3D I2MConversion extension)
- Model Maker (cli, built-in)
- Model To Label Map (cli, built-in)
- Multiply Scalar Volumes (cli, built-in)
- N4ITKBias Field Correction (cli, built-in)
- Non Growing (cli, bundled in CMFreg extension)
- Orient Scalar Volume (cli, built-in)
- Otsu Threshold Image Filter (cli, built-in)
- PBNRR (cli, bundled in PBNRR extension)
- Perform Metric Test (cli, built-in)
- PETStandard Uptake Value Computation (cli, built-in)
- PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
- Pk Modeling (cli, bundled in Pk Modeling extension)
- Probe Volume With Model (cli, built-in)
- Resample DTIVolume (cli, built-in)
- Resample Scalar Vector DWIVolume (cli, built-in)
- Resample Scalar Volume (cli, built-in)
- Robust Statistics Segmenter (cli, built-in)
- Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)
- Simple Region Growing Segmentation (cli, built-in)
- Sobolev Segmenter (cli, bundled in Sobolev Segmenter extension)
- Spacing Aware Curvature Diffusion (cli, bundled in IASEM extension)
- Subtract Scalar Volumes (cli, built-in)
- SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
- Swiss Skull Stripper (cli, bundled in Swiss Skull Stripper extension)
- Test Grid Transform Registration (cli, built-in)
- Threshold Scalar Volume (cli, built-in)
- Tractography Label Map Seeding (cli, built-in)
- VBRAINSDemon Warp (cli, built-in)
- Voting Binary Hole Filling Image Filter (cli, built-in)
loadable
- Annotations (loadable, built-in)
- Cameras (loadable, built-in)
- Carrera Slice (loadable, bundled in Carrera Slice extension)
- Colors (loadable, built-in)
- Crop Volume (loadable, built-in)
- Data (loadable, built-in)
- Data Store (loadable, built-in)
- Dice Computation (loadable, bundled in Dice Computation extension)
- Double Arrays (loadable, built-in)
- EMSegment (loadable, built-in)
- EMSegment Quick (loadable, built-in)
- Fast Grow Cut (loadable, bundled in Fast Grow Cut Effect extension)
- Fast Grow Cut Segmenter (loadable, bundled in Carrera Slice extension)
- Gel Dosimetry Analysis Algo (loadable, bundled in Gel Dosimetry Analysis extension)
- Longitudinal PETCT (loadable, bundled in Longitudinal PETCT extension)
- Markups (loadable, built-in)
- Matlab Module Generator (loadable, bundled in Matlab Bridge extension)
- Metafile Importer (loadable, bundled in Multidim Data extension)
- Models (loadable, built-in)
- Multi Volume Explorer (loadable, built-in)
- Open IGTLink IF (loadable, built-in)
- Perk Evaluator (loadable, bundled in Perk Tutor extension)
- Reformat (loadable, built-in)
- Reporting (loadable, bundled in Reporting extension)
- Scene Views (loadable, built-in)
- Sequence Browser (loadable, bundled in Multidim Data extension)
- Sequences (loadable, bundled in Multidim Data extension)
- Subject Hierarchy (loadable, built-in)
- Tracker Stabilizer (loadable, bundled in Tracker Stabilizer extension)
- Tractography Display (loadable, built-in)
- Tractography Interactive Seeding (loadable, built-in)
- Transform Recorder (loadable, bundled in Perk Tutor extension)
- Transforms (loadable, built-in)
- Units (loadable, built-in)
- View Controllers (loadable, built-in)
- Volume Rendering (loadable, built-in)
- Volumes (loadable, built-in)
- Welcome (loadable, built-in)
- Workflow Segmentation (loadable, bundled in Perk Tutor extension)
scripted
- Binary Watershed Effect (scripted, bundled in IASEM extension)
- Carrera Slice Effect (scripted, bundled in Carrera Slice extension)
- Change Tracker (scripted, bundled in Change Tracker extension)
- Charting (scripted, built-in)
- Compare Volumes (scripted, bundled in CMFreg extension)
- Corner Annotation (scripted, bundled in Corner Annotation extension)
- Curve Maker (scripted, bundled in Curve Maker extension)
- Data Probe (scripted, built-in)
- DICOM (scripted, built-in)
- DICOM2Full Brain Tractography (scripted, built-in)
- Double Threshold Effect (scripted, bundled in IASEM extension)
- Editor (scripted, built-in)
- Endoscopy (scripted, built-in)
- Extension Wizard (scripted, built-in)
- Fast Grow Cut Effect (scripted, bundled in Fast Grow Cut Effect extension)
- Fiber Bundle To Label Map (scripted, built-in)
- Gyro Guide (scripted, bundled in Gyro Guide extension)
- i Gyne (scripted, bundled in i Gyne extension)
- KUtil (scripted, bundled in Carrera Slice extension)
- Label Object Statistics (scripted, bundled in IASEM extension)
- Label Statistics (scripted, built-in)
- Label To DICOMSEGConverter (scripted, bundled in Reporting extension)
- Landmark Registration (scripted, bundled in CMFreg extension)
- Multi Volume Importer (scripted, built-in)
- Needle Finder (scripted, bundled in Needle Finder extension)
- Percutaneous Approach Analysis (scripted, bundled in Percutaneous Approach Analysis extension)
- Port Placement (scripted, bundled in Port Placement extension)
- Py Dev Remote Debug (scripted, bundled in Py Dev Remote Debug extension)
- Python Metrics Calculator (scripted, bundled in Perk Tutor extension)
- Sample Data (scripted, built-in)
- Scene Performance (scripted, built-in)
- Scoliosis Monitoring (scripted, bundled in Scoliosis extension)
- Simple Filters (scripted, built-in)
- Slice Link Logic (scripted, built-in)
- Slicer4Minute (scripted, built-in)
- Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)
- Spinal Curvature Measurement (scripted, bundled in Scoliosis extension)
- Surface Registration (scripted, bundled in CMFreg extension)
- Surface Toolbox (scripted, built-in)
- TCIABrowser (scripted, bundled in TCIABrowser extension)
- Thingiverse Browser (scripted, bundled in Thingiverse Browser extension)
- Vector To Scalar Volume (scripted, built-in)
- Volume Clip With Model (scripted, bundled in Volume Clip extension)
- Volume Clip With Roi (scripted, bundled in Volume Clip extension)
- Volume Rendering Scene Close (scripted, built-in)
- Window Level Effect (scripted, bundled in Window Level Effect extension)
- Xnat Slicer (scripted, bundled in XNATSlicer extension)
Modules by type
3 types:
Extensions by name
67 extensions:
- ABC
- Airway Segmentation
- Cardiac MRI Toolkit
- Cardiac Agaston Measures
- Carrera Slice
- CBC 3D I2MConversion
- Change Tracker
- Cleaver Extension
- CMFreg
- Corner Annotation
- Curve Maker
- Dice Computation
- DTIAtlas Builder
- DTIAtlas Fiber Analyzer
- DTIPrep
- DTIProcess
- Erode Dilate Label
- Faceted Visualizer
- Fast Grow Cut Effect
- Fiber Viewer Light
- Finsler Tractography
- Gel Dosimetry Analysis
- Gyro Guide
- hough Transform CLI
- IASEM
- i Gyne
- Image Maker
- Intensity Segmenter
- LAScar Segmenter
- LASegmenter
- Light Weight Robot IGT
- Longitudinal PETCT
- MABMIS
- Matlab Bridge
- Model Clip
- Model To Model Distance
- Multidim Data
- Needle Finder
- Open CAD
- PBNRR
- Percutaneous Approach Analysis
- Perk Tutor
- PETDICOMExtension
- Pk Modeling
- Port Placement
- Py Dev Remote Debug
- Reporting
- Resection Planner
- RSSExtension
- Scoliosis
- Segmentation Aided Registration
- Shape Population Viewer
- Skull Stripper
- VMTK
- Slicer IGT
- Slicer RT
- Slicer To Kiwi Exporter
- Sobolev Segmenter
- SPHARM-PDM
- Swiss Skull Stripper
- TCIABrowser
- Thingiverse Browser
- Tracker Stabilizer
- UKFTractography
- Volume Clip
- Window Level Effect
- XNATSlicer
Extensions by name
67 extensions:
Extensions by category
26 categories:
- Cardiac
- Cardiac MRI toolkit
- Converters
- Developer Tools
- Diffusion
- Editor Effects
- Exporter
- Filtering
- IGT
- Informatics
- Mesh Generation
- Microscopy
- Multidimensional data
- Quantification
- Radiotherapy
- Registration
- Remote
- Scoliosis
- Segmentation
- Shape Analysis
- Surface Models
- Tractography
- Training
- Utilities
- Vascular Modeling Toolkit
- Wizards
Cardiac
- CardiacAgastonMeasures
Cardiac MRI toolkit
- Cardiac_MRI_Toolkit
Converters
- PETDICOMExtension
Developer Tools
- ImageMaker
- PyDevRemoteDebug
- MatlabBridge
Diffusion
- DTIAtlasBuilder
- DTIProcess
- FiberViewerLight
- DTIAtlasFiberAnalyzer
- DTIPrep
Editor Effects
- WindowLevelEffect
Exporter
- SlicerToKiwiExporter
Filtering
Morphology
- ErodeDilateLabel
IGT
- PortPlacement
- LightWeightRobotIGT
- GyroGuide
- CornerAnnotation
- iGyne
- SlicerIGT
- PercutaneousApproachAnalysis
- NeedleFinder
- TrackerStabilizer
- ResectionPlanner
Informatics
- Reporting
- LongitudinalPETCT
- FacetedVisualizer
- TCIABrowser
- CurveMaker
Mesh Generation
- CBC_3D_I2MConversion
- CleaverExtension
Microscopy
- IASEM
Multidimensional data
- MultidimData
Quantification
- DiceComputation
- PkModeling
Radiotherapy
- SlicerRT
- GelDosimetryAnalysis
Registration
- CMFreg
- SegmentationAidedRegistration
- PBNRR
Remote
- XNATSlicer
Scoliosis
- Scoliosis
Segmentation
- OpenCAD
- SwissSkullStripper
- CarreraSlice
- SkullStripper
- AirwaySegmentation
- houghTransformCLI
- LAScarSegmenter
- RSSExtension
- ABC
- MABMIS
- SobolevSegmenter
- LASegmenter
- FastGrowCutEffect
- IntensitySegmenter
- VolumeClip
Shape Analysis
- ModelToModelDistance
- ShapePopulationViewer
- SPHARM-PDM
Surface Models
- ModelClip
Tractography
- FinslerTractography
- UKFTractography
Training
- PerkTutor
Utilities
- ThingiverseBrowser
Vascular Modeling Toolkit
- SlicerExtension-VMTK
Wizards
- ChangeTracker
Extensions by contributing organization
54 contributing organizations:
- Asclepios INRIA) and Nikos Chrisochoides (CRTC
- Boston Childrens Hospital
- Brigham and Women's Hospital
- BWH
- BWH & MGH
- BWH, SPL
- BWH/UAB
- CARMA
- College of Information Engineering, Zhejiang University of Technology, Hangzhou, China
- Crisalix
- CRTC
- Department of Neurosurgery, PLA General Hospital, Beijing, China
- Department of Orthodontics, UNC
- GE
- GE GLobal Research
- GT
- Isomics
- Kitware
- LUH
- Massachusetts General Hospital
- Moka Creative LLC, Washington University in St. Louis
- NIRAL, UNC
- Noware
- Orobix
- Perk Lab at Queen's University
- Perk Lab, Queen's
- Perk Lab, Queen's University
- PMH
- Queen's University
- Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto
- SBU
- SCI Institute
- Shiga University of Medical Science, Japan
- Shiga University of Medical Science, Japan, SPL
- SPL
- SPL and BWH
- SPL B&W Harvard
- SRI
- Stony Brook University
- Surgical Planning Lab
- UAB
- UIowa
- UNC
- Univ of Michigan
- University College Cork
- University of Bern
- University of Heidelberg
- University of Iowa
- University of Utah
- Utah
- UWA
- Washington University in St. Louis
- yogesh@bwh.harvard.edu
Asclepios INRIA) and Nikos Chrisochoides (CRTC
Boston Childrens Hospital
Brigham and Women's Hospital
BWH
- Change Tracker
- Curve Maker
- Dice Computation
- Fast Grow Cut Effect
- Light Weight Robot IGT
- Open CAD
- Pk Modeling
- RSSExtension
- Segmentation Aided Registration
- Tracker Stabilizer
BWH & MGH
BWH, SPL
BWH/UAB
CARMA
College of Information Engineering, Zhejiang University of Technology, Hangzhou, China
Crisalix
CRTC
Department of Neurosurgery, PLA General Hospital, Beijing, China
Department of Orthodontics, UNC
GE
GE GLobal Research
GT
Isomics
Kitware
LUH
Massachusetts General Hospital
Moka Creative LLC, Washington University in St. Louis
NIRAL, UNC
Noware
Orobix
PerkLab at Queen's University
PerkLab, Queen's
PerkLab, Queen's University
PMH
Queen's University
Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto
SBU
SCI Institute
Shiga University of Medical Science, Japan
Shiga University of Medical Science, Japan, SPL
SPL
SPL and BWH
SPL B&W Harvard
SRI
Stony Brook University
Surgical Planning Lab
UAB
- Carrera Slice
- Fast Grow Cut Effect
- LAScar Segmenter
- LASegmenter
- RSSExtension
- Segmentation Aided Registration
- Sobolev Segmenter
UIowa
UNC
- CMFreg
- DTIAtlas Builder
- DTIAtlas Fiber Analyzer
- DTIPrep
- DTIProcess
- Fiber Viewer Light
- MABMIS
- Model To Model Distance
- Port Placement
- SPHARM-PDM
Univ of Michigan
University College Cork
University of Bern
University of Heidelberg
University of Iowa
University of Utah
Utah
UWA
Washington University in St. Louis
yogesh@bwh.harvard.edu
Extensions by contributing organization
54 contributing organizations:
- Asclepios INRIA) and Nikos Chrisochoides (CRTC
- Boston Childrens Hospital
- Brigham and Women's Hospital
- BWH
- BWH & MGH
- BWH, SPL
- BWH/UAB
- CARMA
- College of Information Engineering, Zhejiang University of Technology, Hangzhou, China
- Crisalix
- CRTC
- Department of Neurosurgery, PLA General Hospital, Beijing, China
- Department of Orthodontics, UNC
- GE
- GE GLobal Research
- GT
- Isomics
- Kitware
- LUH
- Massachusetts General Hospital
- Moka Creative LLC, Washington University in St. Louis
- NIRAL, UNC
- Noware
- Orobix
- Perk Lab at Queen's University
- Perk Lab, Queen's
- Perk Lab, Queen's University
- PMH
- Queen's University
- Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto
- SBU
- SCI Institute
- Shiga University of Medical Science, Japan
- Shiga University of Medical Science, Japan, SPL
- SPL
- SPL and BWH
- SPL B&W Harvard
- SRI
- Stony Brook University
- Surgical Planning Lab
- UAB
- UIowa
- UNC
- Univ of Michigan
- University College Cork
- University of Bern
- University of Heidelberg
- University of Iowa
- University of Utah
- Utah
- UWA
- Washington University in St. Louis
- yogesh@bwh.harvard.edu
Extensions by contributing individual
136 contributing individuals:
- Alireza Mehrtash
- Allen Tannenbaum
- Akila Viswanathan
- Alex Yarmarkovich
- Alireza Mehrtash
- Allen Tannenbaum
- Andre Mastmeyer
- Antonio Damato
- Carl-Fredrik Westin
- Carl-Fredrik Westin.
- Christian Baumgartner
- Hans Johnson
- Ipek Oguz
- Ivan Kolesov
- Jan Egger
- Jiashu Zhang
- Kent Williams
- Lauren Barber
- Liangjia Zhu
- Luping Fang
- Martin Styner
- Matt Lougheed
- Matthew S. Holden
- Nabgha Fahrat
- Patricio Vela
- Peter Savadjiev
- Qing Pan
- Ryan Eckbo
- Sam Song
- Sandy Wells
- Tina Kapur
- Tobias Penzkofer
- Xiaojun CHEN
- Xiaojun Chen
- Yi Gao
- Yinpeng Li
- Yundi Shi
- Adrien Kaiser
- Alan Morris
- Alexis Girault
- Alireza Mehrtash
- Allen Tannenbaum
- and Ron Kikinis
- Andinet Enquobahrie
- Andras Lasso
- Andrey Fedorov
- Andriy Fedorov
- Andriy Kot
- Antonio Tristan-Vega
- Arie Nakhmani
- Arnaud Gelas
- Atsushi Yamada
- Beatriz Paniagua
- Bill Lorensen
- Bradley Lowekamp
- Brig Bagley
- Csaba Pinter
- Dan Marcus
- Daniel Haehn
- Danny Perry
- Demian Wasssermann
- Dinggang Shen
- Ethan Ulrich
- Eugene Kholmovski
- Fotis Drakopoulos
- Francois Budin
- Franklin King
- Greg Gardner
- Greg Sharp
- Guillaume Pernelle
- Hans Johnson
- Harini Veeraraghavan
- Ivan Kolesov
- Jayender Jagadeesan
- Jean-Christophe Fillion-Robin
- Jennifer Andrea
- Jessica Forbes
- Jim Miller
- Jonathan Bronson
- Josh Cates
- Julien Finet
- Juliette Pera
- Jun LIN
- Junichi Tokuda
- Karl Fritscher
- Kevin Wang
- Kilian Pohl
- Koichiro Murakami
- Laurent Chauvin
- Liang-Jia Zhu
- Liangjia Zhu
- Luca Antiga
- Luis G. Torres
- Mahnaz Maddah
- Manson Winsauer
- Marcel Prastawa
- Martha Shenton
- Martin Styner
- Matt Lougheed
- Mattea Welch
- Matthew Holden
- Mauricio Reyes
- Ming-ching Chang
- Minjeong Kim
- Nicole Aucoin
- Nigel Goh
- Nikos Chrisochoides
- Olivier Clatz
- Pat Marion
- Paul Mercea
- Pengdong Xiao
- Peter Black
- Peter Karasev
- Pietro Nardelli
- Rick Herrick
- Rob Mac Leod
- Ron Kikinis
- Ruifeng Chen
- Salma Bengali
- Sebastian Tauscher
- Stefan Bauer
- Stefan Lienhard
- Steve Pieper
- Sunil Kumar
- Sylvain Bouix
- Tamas Ungi
- Thomas Fejes
- Vinicius Boen
- Vivek Narayan
- Xiaodong Tao
- Xiaofeng Liu
- Xiaolei Chen
- Yi Gao
- Yingxuan Zhu
- Yixun Liu
- Yogesh Rathi
Alireza Mehrtash
Allen Tannenbaum
Akila Viswanathan
Alex Yarmarkovich
Alireza Mehrtash
Allen Tannenbaum
Andre Mastmeyer
Antonio Damato
Carl-Fredrik Westin
Carl-Fredrik Westin.
Christian Baumgartner
Hans Johnson
Ipek Oguz
Ivan Kolesov
Jan Egger
Jiashu Zhang
Kent Williams
Lauren Barber
Liangjia Zhu
Luping Fang
Martin Styner
Matt Lougheed
Matthew S. Holden
Nabgha Fahrat
Patricio Vela
Peter Savadjiev
Qing Pan
Ryan Eckbo
Sam Song
Sandy Wells
Tina Kapur
Tobias Penzkofer
Xiaojun CHEN
Xiaojun Chen
Yi Gao
Yinpeng Li
Yundi Shi
Adrien Kaiser
Alan Morris
Alexis Girault
Alireza Mehrtash
Allen Tannenbaum
and Ron Kikinis
Andinet Enquobahrie
Andras Lasso
Andrey Fedorov
- CBC 3D I2MConversion
- Change Tracker
- Longitudinal PETCT
- PBNRR
- PETDICOMExtension
- Reporting
- TCIABrowser
- Window Level Effect
Andriy Fedorov
Andriy Kot
Antonio Tristan-Vega
Arie Nakhmani
Arnaud Gelas
Atsushi Yamada
Beatriz Paniagua
Bill Lorensen
Bradley Lowekamp
Brig Bagley
Csaba Pinter
Dan Marcus
Daniel Haehn
Danny Perry
Demian Wasssermann
Dinggang Shen
Ethan Ulrich
Eugene Kholmovski
Fotis Drakopoulos
Francois Budin
- DTIAtlas Fiber Analyzer
- DTIPrep
- DTIProcess
- Fiber Viewer Light
- Intensity Segmenter
- Model To Model Distance
- SPHARM-PDM
Franklin King
Greg Gardner
Greg Sharp
Guillaume Pernelle
Hans Johnson
Harini Veeraraghavan
Ivan Kolesov
Jayender Jagadeesan
Jean-Christophe Fillion-Robin
Jennifer Andrea
Jessica Forbes
Jim Miller
Jonathan Bronson
Josh Cates
Julien Finet
Juliette Pera
Jun LIN
Junichi Tokuda
Karl Fritscher
Kevin Wang
Kilian Pohl
Koichiro Murakami
Laurent Chauvin
Liang-Jia Zhu
Liangjia Zhu
Luca Antiga
Luis G. Torres
Mahnaz Maddah
Manson Winsauer
Marcel Prastawa
Martha Shenton
Martin Styner
Matt Lougheed
Mattea Welch
Matthew Holden
Mauricio Reyes
Ming-ching Chang
Minjeong Kim
Nicole Aucoin
Nigel Goh
Nikos Chrisochoides
Olivier Clatz
Pat Marion
Paul Mercea
Pengdong Xiao
Peter Black
Peter Karasev
Pietro Nardelli
Rick Herrick
Rob MacLeod
Ron Kikinis
Ruifeng Chen
Salma Bengali
Sebastian Tauscher
Stefan Bauer
Stefan Lienhard
Steve Pieper
Sunil Kumar
Sylvain Bouix
Tamas Ungi
Thomas Fejes
Vinicius Boen
Vivek Narayan
Xiaodong Tao
Xiaofeng Liu
Xiaolei Chen
Yi Gao
- Carrera Slice
- Fast Grow Cut Effect
- LAScar Segmenter
- LASegmenter
- RSSExtension
- Segmentation Aided Registration
Yingxuan Zhu
Yixun Liu
Yogesh Rathi
Extensions by contributing individual
136 contributing individuals:
- Alireza Mehrtash
- Allen Tannenbaum
- Akila Viswanathan
- Alex Yarmarkovich
- Alireza Mehrtash
- Allen Tannenbaum
- Andre Mastmeyer
- Antonio Damato
- Carl-Fredrik Westin
- Carl-Fredrik Westin.
- Christian Baumgartner
- Hans Johnson
- Ipek Oguz
- Ivan Kolesov
- Jan Egger
- Jiashu Zhang
- Kent Williams
- Lauren Barber
- Liangjia Zhu
- Luping Fang
- Martin Styner
- Matt Lougheed
- Matthew S. Holden
- Nabgha Fahrat
- Patricio Vela
- Peter Savadjiev
- Qing Pan
- Ryan Eckbo
- Sam Song
- Sandy Wells
- Tina Kapur
- Tobias Penzkofer
- Xiaojun CHEN
- Xiaojun Chen
- Yi Gao
- Yinpeng Li
- Yundi Shi
- Adrien Kaiser
- Alan Morris
- Alexis Girault
- Alireza Mehrtash
- Allen Tannenbaum
- and Ron Kikinis
- Andinet Enquobahrie
- Andras Lasso
- Andrey Fedorov
- Andriy Fedorov
- Andriy Kot
- Antonio Tristan-Vega
- Arie Nakhmani
- Arnaud Gelas
- Atsushi Yamada
- Beatriz Paniagua
- Bill Lorensen
- Bradley Lowekamp
- Brig Bagley
- Csaba Pinter
- Dan Marcus
- Daniel Haehn
- Danny Perry
- Demian Wasssermann
- Dinggang Shen
- Ethan Ulrich
- Eugene Kholmovski
- Fotis Drakopoulos
- Francois Budin
- Franklin King
- Greg Gardner
- Greg Sharp
- Guillaume Pernelle
- Hans Johnson
- Harini Veeraraghavan
- Ivan Kolesov
- Jayender Jagadeesan
- Jean-Christophe Fillion-Robin
- Jennifer Andrea
- Jessica Forbes
- Jim Miller
- Jonathan Bronson
- Josh Cates
- Julien Finet
- Juliette Pera
- Jun LIN
- Junichi Tokuda
- Karl Fritscher
- Kevin Wang
- Kilian Pohl
- Koichiro Murakami
- Laurent Chauvin
- Liang-Jia Zhu
- Liangjia Zhu
- Luca Antiga
- Luis G. Torres
- Mahnaz Maddah
- Manson Winsauer
- Marcel Prastawa
- Martha Shenton
- Martin Styner
- Matt Lougheed
- Mattea Welch
- Matthew Holden
- Mauricio Reyes
- Ming-ching Chang
- Minjeong Kim
- Nicole Aucoin
- Nigel Goh
- Nikos Chrisochoides
- Olivier Clatz
- Pat Marion
- Paul Mercea
- Pengdong Xiao
- Peter Black
- Peter Karasev
- Pietro Nardelli
- Rick Herrick
- Rob Mac Leod
- Ron Kikinis
- Ruifeng Chen
- Salma Bengali
- Sebastian Tauscher
- Stefan Bauer
- Stefan Lienhard
- Steve Pieper
- Sunil Kumar
- Sylvain Bouix
- Tamas Ungi
- Thomas Fejes
- Vinicius Boen
- Vivek Narayan
- Xiaodong Tao
- Xiaofeng Liu
- Xiaolei Chen
- Yi Gao
- Yingxuan Zhu
- Yixun Liu
- Yogesh Rathi
