Difference between revisions of "Documentation/4.0/SlicerApplication/SupportedDataFormat"

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[[Documentation/4.0|Back to documentation main]]
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<noinclude>{{documentation/versioncheck}}</noinclude>
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<!-- ---------------------------- -->
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=Volumes=
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{{documentation/{{documentation/version}}/slicerapplication-header}}
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*NRRD (.nrrd)
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<!-- ---------------------------- -->
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*NRRD (.nhdr)
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=File formats supported by Slicer {{documentation/version}}=
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*MetaImage (.mhd)
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{| style="margin: 1em auto 1em auto; border: 1px solid darkgray;"
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*MetaImage (.mha)
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|-
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*VTK (.vtk)
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!Format
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*Analyze (.hdr)
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!Extensions
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*Analyze (.img)
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!Read
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*Analyze (.img.gz)
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!Write
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*BMP (.bmp, .BMP)
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!Module
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*BioRad (.pic)
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|-
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*Brains2 (.mask)
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! scope="col" colspan="4" style="border-bottom: 1px solid grey;"| Scenes
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*GIPL (.gipl, .gipl.gz)
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! scope="col"| [[Documentation/{{documentation/version}}/Modules/Data|Data]]
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*JPEG (.jpg, .jpeg, .JPG, .JPEG)
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|-
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*LSM (.lms, .LSM)
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| MRML
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*NifTI (.nia)
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| .mrml
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*NifTI (.nii, .nii.gz)
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|bgcolor="LightGreen" align="center"|yes
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*PNG (.png, .PNG)
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|bgcolor="LightGreen" align="center"|yes
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*Stimulate (.spr)
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|[[Documentation/{{documentation/version}}/Developers/MRML|Data Model]]
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*TIFF (.tiff, .tif, .TIFF, .TIF)
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|-
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=Models=
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! scope="col" colspan="4" style="border-bottom: 1px solid grey;"| Raster Images<br><small>''this includes 2D and 3D images, and more complicated types such as DWI or DTI''</small>
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*Poly Data (.vtk)
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! scope="col"| [[Documentation/{{documentation/version}}/Modules/Volumes|Volumes]]
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*XML Poly Data (.vtp)
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|-
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*STL (.stl)
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| [http://medical.nema.org/ DICOM]
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=Fiducials=
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| .dcm ...
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*Fiducial List CSV (.fcsv)
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|bgcolor="LightGreen" align="center"|yes
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*Text (.txt)
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|bgcolor="#f34a33" align="center"|no<ref>Limited support for writing image volumes in DICOM format is provided by the [[Documentation/4.0/Modules/ImageReadDicomWrite|Create DICOM Series]] module</ref>
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=Transforms=
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|[[Documentation/{{documentation/version}}/Modules/DICOM|DICOM]]
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*Transform (.tfm and .mat) (ITK v3 Transform format documented here (add link))
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|-
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*Text (.txt)
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| [http://teem.sourceforge.net/nrrd/format.html NRRD]
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| .nrrd, .nhdr
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|bgcolor="LightGreen" align="center"|yes
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|bgcolor="LightGreen" align="center"|yes
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|
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|-
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| [http://www.itk.org/Wiki/MetaIO/Documentation MetaImage]
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| .mhd, .mha
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|bgcolor="LightGreen" align="center"|yes
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|bgcolor="LightGreen" align="center"|yes
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|
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|-
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| [http://www.vtk.org/VTK/img/file-formats.pdf VTK]
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| .vtk
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|bgcolor="LightGreen" align="center"|yes
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|bgcolor="LightGreen" align="center"|yes
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|
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|-
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| [http://www.grahamwideman.com/gw/brain/analyze/formatdoc.htm Analyze]
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| .hdr, .img, .img.gz
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|bgcolor="LightGreen" align="center"|yes
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|bgcolor="LightGreen" align="center"|yes
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|
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|-
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| [http://nifti.nimh.nih.gov/nifti-1/ NifTI]
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| .nia, .nii, .nii.gz
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|bgcolor="LightGreen" align="center"|yes
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|bgcolor="LightGreen" align="center"|yes
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|
 +
|-
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| BMP
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| .bmp
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|bgcolor="LightGreen" align="center"|yes
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|bgcolor="LightGreen" align="center"|yes
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|
 +
|-
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| BioRad
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| .pic
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|bgcolor="LightGreen" align="center"|yes
 +
|bgcolor="LightGreen" align="center"|yes
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|
 +
|-
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| Brains2
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| .mask
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|bgcolor="LightGreen" align="center"|yes
 +
|bgcolor="LightGreen" align="center"|yes
 +
|
 +
|-
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| GIPL
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| .gipl .gipl.gz
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|bgcolor="LightGreen" align="center"|yes
 +
|bgcolor="LightGreen" align="center"|yes
 +
|
 +
|-
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| JPEG
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| .jpg, .jpeg
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|bgcolor="LightGreen" align="center"|yes
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|bgcolor="LightGreen" align="center"|yes
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|
 +
|-
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| LSM
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| .lsm
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|bgcolor="LightGreen" align="center"|yes
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|bgcolor="LightGreen" align="center"|yes
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|
 +
|-
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| PNG
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| .png
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|bgcolor="LightGreen" align="center"|yes
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|bgcolor="LightGreen" align="center"|yes
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|
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|-
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| Stimulate
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| .spr
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|bgcolor="LightGreen" align="center"|yes
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|bgcolor="LightGreen" align="center"|yes
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|
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|-
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| TIFF
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| .tif, .tiff
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|bgcolor="LightGreen" align="center"|yes
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|bgcolor="LightGreen" align="center"|yes
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|
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|-
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| MGH-NMR
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| .mgz
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|bgcolor="LightGreen" align="center"|yes
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|bgcolor="LightGreen" align="center"|yes
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|
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|-
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! scope="col" colspan="4" style="border-bottom: 1px solid grey;"| Models
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! scope="col"| [[Documentation/{{documentation/version}}/Modules/Models|Models]]
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|-
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| [http://www.vtk.org/VTK/img/file-formats.pdf VTK Polygonal Data]
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| .vtk
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|bgcolor="LightGreen" align="center"|yes
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|bgcolor="LightGreen" align="center"|yes
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|
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|-
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| [http://www.vtk.org/VTK/img/file-formats.pdf VTK XML Polygonal Data]
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| .vtp
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|bgcolor="LightGreen" align="center"|yes
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|bgcolor="LightGreen" align="center"|yes
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|
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|-
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| STL
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| .stl
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|bgcolor="LightGreen" align="center"|yes
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|bgcolor="LightGreen" align="center"|yes
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|
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|-
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| OBJ
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| .obj
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|bgcolor="LightGreen" align="center"|yes
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|bgcolor="#f34a33" align="center"|no
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|
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|-
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| Others (to be tested)
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|  .g, .byu, .orig, .inflated, .sphere, .white, .smoothwm, .pial
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|bgcolor="LightGreen" align="center"|yes
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|bgcolor="#f34a33" align="center"|no
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|
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|-
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! scope="col" colspan="4" style="border-bottom: 1px solid grey;"| Fiducials
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! scope="col"| [[Documentation/{{documentation/version}}/Modules/Annotations|Annotations]]
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|-
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| CSV
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| .fcsv
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|bgcolor="LightGreen" align="center"|yes
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|bgcolor="LightGreen" align="center"|yes
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|
 +
|-
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| Text
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| .txt
 +
|bgcolor="LightGreen" align="center"|yes
 +
|bgcolor="LightGreen" align="center"|yes
 +
|
 +
|-
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! scope="col" colspan="4" style="border-bottom: 1px solid grey;"| Transforms
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! scope="col"| [[Documentation/{{documentation/version}}/Modules/Transforms|Transforms]]
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|-
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| [http://www.itk.org/ItkSoftwareGuide.pdf Transform]
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| .tfm, .mat
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|bgcolor="LightGreen" align="center"|yes
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|bgcolor="LightGreen" align="center"|yes
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|
 +
|-
 +
| Text
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| .txt
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|bgcolor="LightGreen" align="center"|yes
 +
|bgcolor="LightGreen" align="center"|yes
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|
 +
|-
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! scope="col" colspan="4" style="border-bottom: 1px solid grey;"| Transfer Functions
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! scope="col"| [[Documentation/{{documentation/version}}/Modules/VolumeRendering|Volume Rendering]]
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|-
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| Volume Rendering properties
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| .vp
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|bgcolor="LightGreen" align="center"|yes
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|bgcolor="LightGreen" align="center"|yes
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|
 +
|-
 +
| Text
 +
| .txt
 +
|bgcolor="LightGreen" align="center"|yes
 +
|bgcolor="LightGreen" align="center"|yes
 +
|
 +
|-
 +
! scope="col" colspan="4" style="border-bottom: 1px solid grey;"| Lookup tables
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! scope="col"| [[Documentation/{{documentation/version}}/Modules/Colors|Colors]]
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|-
 +
| [[Documentation/{{documentation/version}}/Modules/Colors#File_format|Text]]
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| .txt, .ctbl
 +
|bgcolor="LightGreen" align="center"|yes
 +
|bgcolor="LightGreen" align="center"|yes
 +
|
 +
|}
 +
<references/>
 
=References=
 
=References=
 
* [http://www.vtk.org/Wiki/ITK_File_Formats ITK File Formats]
 
* [http://www.vtk.org/Wiki/ITK_File_Formats ITK File Formats]
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<!-- ---------------------------- -->
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{{documentation/{{documentation/version}}/slicerapplication-footer}}
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<!-- ---------------------------- -->

Latest revision as of 07:36, 14 June 2013

Home < Documentation < 4.0 < SlicerApplication < SupportedDataFormat


For the latest Slicer documentation, visit the read-the-docs.


File formats supported by Slicer 4.0

Format Extensions Read Write Module
Scenes Data
MRML .mrml yes yes Data Model
Raster Images
this includes 2D and 3D images, and more complicated types such as DWI or DTI 		Volumes
DICOM .dcm ... yes no[1] DICOM
NRRD .nrrd, .nhdr yes yes
MetaImage .mhd, .mha yes yes
VTK .vtk yes yes
Analyze .hdr, .img, .img.gz yes yes
NifTI .nia, .nii, .nii.gz yes yes
BMP .bmp yes yes
BioRad .pic yes yes
Brains2 .mask yes yes
GIPL .gipl .gipl.gz yes yes
JPEG .jpg, .jpeg yes yes
LSM .lsm yes yes
PNG .png yes yes
Stimulate .spr yes yes
TIFF .tif, .tiff yes yes
MGH-NMR .mgz yes yes
Models Models
VTK Polygonal Data .vtk yes yes
VTK XML Polygonal Data .vtp yes yes
STL .stl yes yes
OBJ .obj yes no
Others (to be tested) .g, .byu, .orig, .inflated, .sphere, .white, .smoothwm, .pial yes no
Fiducials Annotations
CSV .fcsv yes yes
Text .txt yes yes
Transforms Transforms
Transform .tfm, .mat yes yes
Text .txt yes yes
Transfer Functions Volume Rendering
Volume Rendering properties .vp yes yes
Text .txt yes yes
Lookup tables Colors
Text .txt, .ctbl yes yes
  1. ↑ Limited support for writing image volumes in DICOM format is provided by the Create DICOM Series module

References

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