Difference between revisions of "Documentation/4.0/SlicerApplication/LookupTables"
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=Overview= | =Overview= | ||
| − | Slicer offers a variety of predefined lookup tables (LUT). | + | Slicer offers a variety of predefined lookup tables (LUT). Volumes can be associated with a LUT in the volumes module. Also, [[Documentation/4.0/Modules/Colors|see the colors module]]. |
=LUTs= | =LUTs= | ||
| − | <gallery> | + | <gallery widths=200px> |
| − | file:DiscreteLUTs-2012-02-18.png|Discrete | + | file:DiscreteLUTs-2012-02-18.png|''Discrete LUTs'' |
| − | file:Shade-LUTs-2012-02-18.png|Shade | + | file:Shade-LUTs-2012-02-18.png|''Shade LUTs'' |
| − | file:Tint-LUTs-2012-02-18.png|Tint | + | file:Tint-LUTs-2012-02-18.png|''Tint LUTs'' |
| − | file:Freesurfer-LUTs-2012-02-18.png|Freesurfer | + | file:Freesurfer-LUTs-2012-02-18.png|''Freesurfer LUTs''<br> [[Slicer3:Freesurfer_labels|Freesurfer labels]] |
| − | file:PET-LUTs-2012-02-18.png|PET | + | file:PET-LUTs-2012-02-18.png|''PET LUTs'' |
| − | file:CartilageMRI-LUTs-2012-02-18.png|Cartilage MRI | + | file:CartilageMRI-LUTs-2012-02-18.png|''Cartilage MRI LUTs'' |
| − | file:Labelmap-LUTs-2012-02-18.png|Labelmap | + | file:Labelmap-LUTs-2012-02-18.png|''Labelmap LUTs''<br> [[Slicer3:2010_Brain_Labels|2010 Brain Labels]]: Label colors for brain segmentation<br> [[Slicer3:2010_Label_Colors|2010 Label Colors]]: Colors for a generic labelmap |
| − | file:GenericLabel-LUTs-2012-02-18.png|Generic Labelmap | + | file:GenericLabel-LUTs-2012-02-18.png|''Generic Labelmap LUTs''<br> [[Slicer3:2010_GenericAnatomyColors|GenericAnatomyColors]]: default LUT<br> [[Slicer3:GenericColors.txt|GenericColors]] |
</gallery> | </gallery> | ||
| + | ===Custom LUTs=== | ||
| + | *[[Slicer3:Mori-Atlas_labels|Mori-Atlas labels]] | ||
| + | *[[Slicer3:Lauras_labels|Lauras labels]] | ||
| + | *[[CCA:Atlases:MRI_Brain_Atlas_2010:ColorFile|2010 Brain Atlas]]:Good example of the wiki-based labelpage format, including multiple tables. | ||
| + | |||
| + | ===LUTs for Charting=== | ||
| + | Please see the [[Slicer4:2012_GenericChartColors|separate page]] | ||
| + | |||
| + | =LUTs in Slicer= | ||
| + | You can review and edit LUTs in Slicer via the [[Documentation/{{documentation/version}}/Modules/Colors|Colors module]] | ||
=Slicer ColorPicker= | =Slicer ColorPicker= | ||
[[Image:SlicerColorPicker-2012-02-18.png|300px|right|thumb|The slicer colorpicker allows to select colors from a label map and to assign them to objects such as surface models or streamlines]] | [[Image:SlicerColorPicker-2012-02-18.png|300px|right|thumb|The slicer colorpicker allows to select colors from a label map and to assign them to objects such as surface models or streamlines]] | ||
| − | |||
| − | |||
| − | |||
=Custom LUTs= | =Custom LUTs= | ||
| − | It is relatively easy to create custom LUTs by creating a table with the colors on the wiki. See | + | It is relatively easy to create custom LUTs by creating a table with the colors on the wiki. This allows to select specific names and colors when segmenting. See below for an example. |
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* Standard color names and values: http://www.w3.org/TR/SVG/types.html#ColorKeywords | * Standard color names and values: http://www.w3.org/TR/SVG/types.html#ColorKeywords | ||
* [http://labelpage.halle.us/ Go here] to create a text file in Slicer LUT format. | * [http://labelpage.halle.us/ Go here] to create a text file in Slicer LUT format. | ||
| + | * A custom LUT can be loaded into Slicer like any other file. | ||
Latest revision as of 07:33, 14 June 2013
Home < Documentation < 4.0 < SlicerApplication < LookupTables
|
For the latest Slicer documentation, visit the read-the-docs. |
Overview
Slicer offers a variety of predefined lookup tables (LUT). Volumes can be associated with a LUT in the volumes module. Also, see the colors module.
LUTs
Discrete LUTs
Shade LUTs
Tint LUTs
Freesurfer LUTs
Freesurfer labels
PET LUTs
Cartilage MRI LUTs
Labelmap LUTs
2010 Brain Labels: Label colors for brain segmentation
2010 Label Colors: Colors for a generic labelmap
Generic Labelmap LUTs
GenericAnatomyColors: default LUT
GenericColors
Custom LUTs
- Mori-Atlas labels
- Lauras labels
- 2010 Brain Atlas:Good example of the wiki-based labelpage format, including multiple tables.
LUTs for Charting
Please see the separate page
LUTs in Slicer
You can review and edit LUTs in Slicer via the Colors module
Slicer ColorPicker
Custom LUTs
It is relatively easy to create custom LUTs by creating a table with the colors on the wiki. This allows to select specific names and colors when segmenting. See below for an example.
| integer_label | text_label | color | notes |
|---|---|---|---|
| 0 | background | rgba(0,0,0,0) | |
| 1 | tissue | rgb(128,174,128) | Default label for bodily tissues |
| 2 | bone | rgb(241,214,145) | |
| 3 | skin | rgb(177,122,101) | |
| 4 | connective tissue | rgb(111,184,210) |
- Standard color names and values: http://www.w3.org/TR/SVG/types.html#ColorKeywords
- Go here to create a text file in Slicer LUT format.
- A custom LUT can be loaded into Slicer like any other file.
