MRML node to represent display properties for tractography. More...

#include <Libs/MRML/Core/vtkMRMLGlyphableVolumeSliceDisplayNode.h>

Inheritance diagram for vtkMRMLGlyphableVolumeSliceDisplayNode:

Collaboration diagram for vtkMRMLGlyphableVolumeSliceDisplayNode:

Public Types
enum	{ colorModeSolid = 0, colorModeScalar = 1, colorModeFunctionOfScalar = 2, colorModeUseCellScalars = 3 }
	Display Information: Geometry to display (not mutually exclusive) More...
typedef vtkMRMLModelDisplayNode	Superclass
Public Member Functions
virtual void	Copy (vtkMRMLNode *node)
virtual vtkMRMLNode *	CreateNodeInstance ()
	MRMLNode methods.
virtual const char *	GetClassName ()
virtual int	GetColorMode ()
	Display Information: ColorMode for ALL nodes.
virtual const char *	GetNodeTagName ()
virtual vtkPolyData *	GetOutputPolyData ()
virtual vtkImageData *	GetSliceImage ()
virtual vtkPolyData *	GetSliceOutputPolyData ()
virtual int	IsA (const char *type)
void	PrintSelf (ostream &os, vtkIndent indent)
virtual void	ProcessMRMLEvents (vtkObject , unsigned long, void )
virtual void	ReadXMLAttributes (const char **atts)
virtual void	SetColorMode (int)
void	SetColorModeToFunctionOfScalar ()
void	SetColorModeToScalar ()
void	SetColorModeToSolid ()
void	SetColorModeToUseCellScalars ()
virtual void	SetSliceGlyphRotationMatrix (vtkMatrix4x4 *matrix)
virtual void	SetSliceImage (vtkImageData *image)
virtual void	SetSlicePositionMatrix (vtkMatrix4x4 *matrix)
virtual void	UpdatePolyDataPipeline ()
virtual void	UpdateReferenceID (const char oldID, const char newID)
	Update the stored reference to another node in the scene.
virtual void	UpdateReferences ()
virtual void	UpdateScene (vtkMRMLScene *scene)
virtual void	WriteXML (ostream &of, int indent)
Static Public Member Functions
static int	IsTypeOf (const char *type)
static vtkMRMLGlyphableVolumeSliceDisplayNode *	New ()
static vtkMRMLGlyphableVolumeSliceDisplayNode *	SafeDownCast (vtkObject *o)
Protected Member Functions
virtual vtkAlgorithmOutput *	GetOutputPort ()
virtual vtkAlgorithmOutput *	GetSliceOutputPort ()
void	operator= (const vtkMRMLGlyphableVolumeSliceDisplayNode &)
virtual void	SetInputToPolyDataPipeline (vtkPolyData *glyphPolyData)
	Ignore input polydata as it takes a volume slice as input.
	vtkMRMLGlyphableVolumeSliceDisplayNode ()
	Display Information: ColorMode for glyphs.
	vtkMRMLGlyphableVolumeSliceDisplayNode (const vtkMRMLGlyphableVolumeSliceDisplayNode &)
	~vtkMRMLGlyphableVolumeSliceDisplayNode ()
Protected Attributes
int	ColorMode
	Enumerated.
vtkImageData *	SliceImage
vtkMatrix4x4 *	SliceToXYMatrix
vtkTransform *	SliceToXYTransform
vtkTransformPolyDataFilter *	SliceToXYTransformer

Detailed Description

MRML node to represent display properties for tractography.

vtkMRMLGlyphableVolumeSliceDisplayNode nodes store display properties of trajectories from tractography in diffusion MRI data, including color type (by bundle, by fiber, or by scalar invariants), display on/off for tensor glyphs and display of trajectory as a line or tube.

Definition at line 34 of file vtkMRMLGlyphableVolumeSliceDisplayNode.h.

Member Typedef Documentation

typedef vtkMRMLModelDisplayNode vtkMRMLGlyphableVolumeSliceDisplayNode::Superclass

Reimplemented from vtkMRMLModelDisplayNode.

Reimplemented in vtkMRMLDiffusionTensorVolumeSliceDisplayNode.

Definition at line 38 of file vtkMRMLGlyphableVolumeSliceDisplayNode.h.

Member Enumeration Documentation

anonymous enum

Display Information: Geometry to display (not mutually exclusive)

Display Information: Color Mode 0) solid color by group 1) color by scalar invariant 2) color by avg scalar invariant 3) color by other

Enumerator:

colorModeSolid
colorModeScalar
colorModeFunctionOfScalar
colorModeUseCellScalars

Definition at line 124 of file vtkMRMLGlyphableVolumeSliceDisplayNode.h.

Constructor & Destructor Documentation

vtkMRMLGlyphableVolumeSliceDisplayNode::vtkMRMLGlyphableVolumeSliceDisplayNode ( ) [protected]

Display Information: ColorMode for glyphs.

MRML nodes that are observed

vtkMRMLGlyphableVolumeSliceDisplayNode::~vtkMRMLGlyphableVolumeSliceDisplayNode ( ) [protected]

vtkMRMLGlyphableVolumeSliceDisplayNode::vtkMRMLGlyphableVolumeSliceDisplayNode ( const vtkMRMLGlyphableVolumeSliceDisplayNode & ) [protected]

Member Function Documentation

virtual void vtkMRMLGlyphableVolumeSliceDisplayNode::Copy ( vtkMRMLNode * node ) [virtual]

Copy the node's attributes to this object

Reimplemented from vtkMRMLDisplayNode.

Reimplemented in vtkMRMLDiffusionTensorVolumeSliceDisplayNode.

virtual vtkMRMLNode* vtkMRMLGlyphableVolumeSliceDisplayNode::CreateNodeInstance ( ) [virtual]

MRMLNode methods.

Reimplemented from vtkMRMLModelDisplayNode.

Reimplemented in vtkMRMLDiffusionTensorVolumeSliceDisplayNode.

virtual const char* vtkMRMLGlyphableVolumeSliceDisplayNode::GetClassName ( ) [virtual]

Reimplemented from vtkMRMLModelDisplayNode.

Reimplemented in vtkMRMLDiffusionTensorVolumeSliceDisplayNode.

virtual int vtkMRMLGlyphableVolumeSliceDisplayNode::GetColorMode ( ) [virtual]

Display Information: ColorMode for ALL nodes.

Description: Color mode for glyphs. The color modes are mutually exclusive.

virtual const char* vtkMRMLGlyphableVolumeSliceDisplayNode::GetNodeTagName ( ) [inline, virtual]

Get node XML tag name (like Volume, UnstructuredGrid)

Reimplemented from vtkMRMLModelDisplayNode.

Reimplemented in vtkMRMLDiffusionTensorVolumeSliceDisplayNode.

Definition at line 62 of file vtkMRMLGlyphableVolumeSliceDisplayNode.h.

virtual vtkPolyData* vtkMRMLGlyphableVolumeSliceDisplayNode::GetOutputPolyData ( ) [virtual]

Return the glyph polydata for the input slice image. This is the polydata to use in a 3D view. Reimplemented to by-pass the check on the input polydata.

See also:: GetSliceOutputPolyData(), GetOutputPort()

Reimplemented from vtkMRMLModelDisplayNode.

virtual vtkAlgorithmOutput* vtkMRMLGlyphableVolumeSliceDisplayNode::GetOutputPort ( ) [protected, virtual]

Return the output of the glyph producer for the input image data. The output is connected as the input of the slice transform. It must be reimplemented in subclasses.

See also:: GetOutputPolyData(), GetSliceOutputPort()

Reimplemented from vtkMRMLModelDisplayNode.

Reimplemented in vtkMRMLDiffusionTensorVolumeSliceDisplayNode.

virtual vtkImageData* vtkMRMLGlyphableVolumeSliceDisplayNode::GetSliceImage ( ) [virtual]

virtual vtkPolyData* vtkMRMLGlyphableVolumeSliceDisplayNode::GetSliceOutputPolyData ( ) [virtual]

Return the glyph polyData transfomed to slice XY. This is the polydata to use in a 2D slice.

See also:: GetOutputPolyData(), GetSliceOutputPort()

virtual vtkAlgorithmOutput* vtkMRMLGlyphableVolumeSliceDisplayNode::GetSliceOutputPort ( ) [protected, virtual]

Return the glyph output transfomed to slice XY. Return the output of the glyph producer for the entire volume.

See also:: GetSliceOutputPolyData(), GetOutputPort()

virtual int vtkMRMLGlyphableVolumeSliceDisplayNode::IsA ( const char * type ) [virtual]

Reimplemented from vtkMRMLModelDisplayNode.

Reimplemented in vtkMRMLDiffusionTensorVolumeSliceDisplayNode.

static int vtkMRMLGlyphableVolumeSliceDisplayNode::IsTypeOf ( const char * type ) [static]

Reimplemented from vtkMRMLModelDisplayNode.

Reimplemented in vtkMRMLDiffusionTensorVolumeSliceDisplayNode.

static vtkMRMLGlyphableVolumeSliceDisplayNode* vtkMRMLGlyphableVolumeSliceDisplayNode::New ( ) [static]

Reimplemented from vtkMRMLModelDisplayNode.

Reimplemented in vtkMRMLDiffusionTensorVolumeSliceDisplayNode.

void vtkMRMLGlyphableVolumeSliceDisplayNode::operator= ( const vtkMRMLGlyphableVolumeSliceDisplayNode & ) [protected]

void vtkMRMLGlyphableVolumeSliceDisplayNode::PrintSelf	(	ostream &	os,
		vtkIndent	indent
	)

Reimplemented from vtkMRMLDisplayNode.

Reimplemented in vtkMRMLDiffusionTensorVolumeSliceDisplayNode.

virtual void vtkMRMLGlyphableVolumeSliceDisplayNode::ProcessMRMLEvents	(	vtkObject *	,
		unsigned	long,
		void *
	)		`[virtual]`

alternative method to propagate events generated in Display nodes

Reimplemented from vtkMRMLModelDisplayNode.

Reimplemented in vtkMRMLDiffusionTensorVolumeSliceDisplayNode.

virtual void vtkMRMLGlyphableVolumeSliceDisplayNode::ReadXMLAttributes ( const char ** atts ) [virtual]

Read node attributes from XML (MRML) file

Reimplemented from vtkMRMLDisplayNode.

Reimplemented in vtkMRMLDiffusionTensorVolumeSliceDisplayNode.

static vtkMRMLGlyphableVolumeSliceDisplayNode* vtkMRMLGlyphableVolumeSliceDisplayNode::SafeDownCast ( vtkObject * o ) [static]

Reimplemented from vtkMRMLModelDisplayNode.

Reimplemented in vtkMRMLDiffusionTensorVolumeSliceDisplayNode.

virtual void vtkMRMLGlyphableVolumeSliceDisplayNode::SetColorMode ( int ) [virtual]

void vtkMRMLGlyphableVolumeSliceDisplayNode::SetColorModeToFunctionOfScalar ( ) [inline]

Color according to the tensors using a function of scalar invariants along the tract. This enables coloring by average FA, for example.

Reimplemented in vtkMRMLDiffusionTensorVolumeSliceDisplayNode.

Definition at line 156 of file vtkMRMLGlyphableVolumeSliceDisplayNode.h.

void vtkMRMLGlyphableVolumeSliceDisplayNode::SetColorModeToScalar ( ) [inline]

Color according to the tensors using various scalar invariants.

Reimplemented in vtkMRMLDiffusionTensorVolumeSliceDisplayNode.

Definition at line 149 of file vtkMRMLGlyphableVolumeSliceDisplayNode.h.

void vtkMRMLGlyphableVolumeSliceDisplayNode::SetColorModeToSolid ( ) [inline]

Color by solid color (for example the whole fiber bundle red. blue, etc.)

Reimplemented in vtkMRMLDiffusionTensorVolumeSliceDisplayNode.

Definition at line 143 of file vtkMRMLGlyphableVolumeSliceDisplayNode.h.

void vtkMRMLGlyphableVolumeSliceDisplayNode::SetColorModeToUseCellScalars ( ) [inline]

Use to color by the active cell scalars. This is intended to support external processing of fibers, for example to label each with the distance of that fiber from an fMRI activation. Then by making that information the active cell scalar field, this will allow coloring by that information. TO DO: make sure this information can be saved with the tract, save name of active scalar field if needed.

Reimplemented in vtkMRMLDiffusionTensorVolumeSliceDisplayNode.

Definition at line 167 of file vtkMRMLGlyphableVolumeSliceDisplayNode.h.

virtual void vtkMRMLGlyphableVolumeSliceDisplayNode::SetInputToPolyDataPipeline ( vtkPolyData * glyphPolyData ) [protected, virtual]

Ignore input polydata as it takes a volume slice as input.

Reimplemented from vtkMRMLModelDisplayNode.

virtual void vtkMRMLGlyphableVolumeSliceDisplayNode::SetSliceGlyphRotationMatrix ( vtkMatrix4x4 * matrix ) [virtual]

Set slice to IJK transformation

Reimplemented in vtkMRMLDiffusionTensorVolumeSliceDisplayNode.

virtual void vtkMRMLGlyphableVolumeSliceDisplayNode::SetSliceImage ( vtkImageData * image ) [virtual]

Set imageData of a volume slice. This is used as the input of the display pipeline instead of SetInputPolyData().

See also:: GetOutputPolyData(), SetInputPolyData()

Reimplemented in vtkMRMLDiffusionTensorVolumeSliceDisplayNode.

virtual void vtkMRMLGlyphableVolumeSliceDisplayNode::SetSlicePositionMatrix ( vtkMatrix4x4 * matrix ) [virtual]

Set slice to RAS transformation

Reimplemented in vtkMRMLDiffusionTensorVolumeSliceDisplayNode.

virtual void vtkMRMLGlyphableVolumeSliceDisplayNode::UpdatePolyDataPipeline ( ) [virtual]

Update the pipeline based on this node attributes

Reimplemented from vtkMRMLModelDisplayNode.

Reimplemented in vtkMRMLDiffusionTensorVolumeSliceDisplayNode.

virtual void vtkMRMLGlyphableVolumeSliceDisplayNode::UpdateReferenceID	(	const char *	oldID,
		const char *	newID
	)		`[inline, virtual]`

Update the stored reference to another node in the scene.

Reimplemented from vtkMRMLDisplayNode.

Reimplemented in vtkMRMLDiffusionTensorVolumeSliceDisplayNode.

Definition at line 69 of file vtkMRMLGlyphableVolumeSliceDisplayNode.h.

virtual void vtkMRMLGlyphableVolumeSliceDisplayNode::UpdateReferences ( ) [virtual]

Updates this node if it depends on other nodes when the node is deleted in the scene

Reimplemented from vtkMRMLDisplayNode.

Reimplemented in vtkMRMLDiffusionTensorVolumeSliceDisplayNode.

virtual void vtkMRMLGlyphableVolumeSliceDisplayNode::UpdateScene ( vtkMRMLScene * scene ) [virtual]

Finds the storage node and read the data

Reimplemented from vtkMRMLDisplayNode.

Reimplemented in vtkMRMLDiffusionTensorVolumeSliceDisplayNode.

virtual void vtkMRMLGlyphableVolumeSliceDisplayNode::WriteXML	(	ostream &	of,
		int	indent
	)		`[virtual]`

Write this node's information to a MRML file in XML format.

Reimplemented from vtkMRMLDisplayNode.

Reimplemented in vtkMRMLDiffusionTensorVolumeSliceDisplayNode.

Member Data Documentation

int vtkMRMLGlyphableVolumeSliceDisplayNode::ColorMode [protected]

Enumerated.

Definition at line 207 of file vtkMRMLGlyphableVolumeSliceDisplayNode.h.

vtkImageData* vtkMRMLGlyphableVolumeSliceDisplayNode::SliceImage [protected]

Definition at line 200 of file vtkMRMLGlyphableVolumeSliceDisplayNode.h.

vtkMatrix4x4* vtkMRMLGlyphableVolumeSliceDisplayNode::SliceToXYMatrix [protected]

Definition at line 203 of file vtkMRMLGlyphableVolumeSliceDisplayNode.h.

vtkTransform* vtkMRMLGlyphableVolumeSliceDisplayNode::SliceToXYTransform [protected]

Definition at line 201 of file vtkMRMLGlyphableVolumeSliceDisplayNode.h.

vtkTransformPolyDataFilter* vtkMRMLGlyphableVolumeSliceDisplayNode::SliceToXYTransformer [protected]

Definition at line 202 of file vtkMRMLGlyphableVolumeSliceDisplayNode.h.

The documentation for this class was generated from the following file:

Libs/MRML/Core/vtkMRMLGlyphableVolumeSliceDisplayNode.h

Public Types

Public Member Functions

Static Public Member Functions

Protected Member Functions

Protected Attributes

Detailed Description

Member Typedef Documentation

Member Enumeration Documentation

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation