#include <Modules/CLI/RobustStatisticsSegmenter/SFLSSegmentor3D.h>

Inheritance diagram for CSFLSSegmentor3D< TPixel >:

Collaboration diagram for CSFLSSegmentor3D< TPixel >:

Public Types
typedef SuperClassType::CSFLSLayer	CSFLSLayer
typedef TImage	ImageType
typedef TCharImage	LabelImageType
typedef TFloatImage	LSImageType
typedef TUCharImage	MaskImageType
typedef SuperClassType::NodeType	NodeType
typedef CSFLSSegmentor3D< TPixel >	Self
typedef CSFLS	SuperClassType
typedef itk::Image< char, 3 >	TCharImage
typedef itk::Image< double, 3 >	TDoubleImage
typedef itk::Image< float, 3 >	TFloatImage
typedef itk::Image< TPixel, 3 >	TImage
typedef TImage::IndexType	TIndex
typedef TImage::RegionType	TRegion
typedef TImage::SizeType	TSize
typedef itk::Image< unsigned char, 3 >	TUCharImage
Public Member Functions
void	basicInit ()
virtual void	computeForce ()=0
double	computeKappa (long ix, long iy, long iz)
	CSFLSSegmentor3D ()
virtual void	doSegmenation ()=0
LSImageType::Pointer	getLevelSetFunction ()
bool	getPhiOfTheNbhdWhoIsClosestToZeroLevelInLayerCloserToZeroLevel (long ix, long iy, long iz, double &thePhi)
void	getZeroLayerAtIteration (unsigned long i)
void	initializeLabel ()
void	initializePhi ()
void	initializeSFLS ()
void	initializeSFLSFromMask ()
void	keepZeroLayerHistory (bool b)
void	normalizeForce ()
void	oneStepLevelSetEvolution ()
void	setCurvatureWeight (double a)
void	setImage (typename ImageType::Pointer img)
void	setMask (typename MaskImageType::Pointer mask)
void	setMaxRunningTime (double t)
void	setMaxVolume (double v)
void	setNumIter (unsigned long n)
void	writeZeroLayerAtIterationToFile (unsigned long i, const char *name)
void	writeZeroLayerToFile (const char *namePrefix)
virtual	~CSFLSSegmentor3D ()
Public Attributes
std::vector< double >	m_force
unsigned long	m_numIter
double	m_timeStep
ImageType::Pointer	mp_img
LabelImageType::Pointer	mp_label
MaskImageType::Pointer	mp_mask
LSImageType::Pointer	mp_phi
Protected Member Functions
bool	doubleEqual (double a, double b, double eps=1e-10)
void	updateInsideVoxelCount ()
Protected Attributes
double	m_curvatureWeight
bool	m_done
double	m_dx
double	m_dy
double	m_dz
double	m_insideVolume
long	m_insideVoxelCount
bool	m_keepZeroLayerHistory
CSFLSLayer	m_lIn2out
CSFLSLayer	m_lOut2in
double	m_maxRunningTime
double	m_maxVolume
long	m_nx
long	m_ny
long	m_nz
std::vector< CSFLSLayer >	m_zeroLayerHistory

Detailed Description

template<typename TPixel>
class CSFLSSegmentor3D< TPixel >

Definition at line 16 of file SFLSSegmentor3D.h.

Member Typedef Documentation

template<typename TPixel >

typedef SuperClassType::CSFLSLayer CSFLSSegmentor3D< TPixel >::CSFLSLayer

Reimplemented from CSFLS.

Reimplemented in CSFLSRobustStatSegmentor3DLabelMap< TPixel >.

Definition at line 24 of file SFLSSegmentor3D.h.

template<typename TPixel >

typedef TImage CSFLSSegmentor3D< TPixel >::ImageType

Definition at line 33 of file SFLSSegmentor3D.h.

template<typename TPixel >

typedef TCharImage CSFLSSegmentor3D< TPixel >::LabelImageType

Definition at line 35 of file SFLSSegmentor3D.h.

template<typename TPixel >

typedef TFloatImage CSFLSSegmentor3D< TPixel >::LSImageType

Definition at line 34 of file SFLSSegmentor3D.h.

template<typename TPixel >

typedef TUCharImage CSFLSSegmentor3D< TPixel >::MaskImageType

Definition at line 36 of file SFLSSegmentor3D.h.

template<typename TPixel >

typedef SuperClassType::NodeType CSFLSSegmentor3D< TPixel >::NodeType

Reimplemented from CSFLS.

Reimplemented in CSFLSRobustStatSegmentor3DLabelMap< TPixel >.

Definition at line 23 of file SFLSSegmentor3D.h.

template<typename TPixel >

typedef CSFLSSegmentor3D<TPixel> CSFLSSegmentor3D< TPixel >::Self

Reimplemented from CSFLS.

Reimplemented in CSFLSRobustStatSegmentor3DLabelMap< TPixel >.

Definition at line 19 of file SFLSSegmentor3D.h.

template<typename TPixel >

typedef CSFLS CSFLSSegmentor3D< TPixel >::SuperClassType

Reimplemented in CSFLSRobustStatSegmentor3DLabelMap< TPixel >.

Definition at line 21 of file SFLSSegmentor3D.h.

template<typename TPixel >

typedef itk::Image<char, 3> CSFLSSegmentor3D< TPixel >::TCharImage

Definition at line 30 of file SFLSSegmentor3D.h.

template<typename TPixel >

typedef itk::Image<double, 3> CSFLSSegmentor3D< TPixel >::TDoubleImage

Definition at line 29 of file SFLSSegmentor3D.h.

template<typename TPixel >

typedef itk::Image<float, 3> CSFLSSegmentor3D< TPixel >::TFloatImage

Reimplemented in CSFLSRobustStatSegmentor3DLabelMap< TPixel >.

Definition at line 28 of file SFLSSegmentor3D.h.

template<typename TPixel >

typedef itk::Image<TPixel, 3> CSFLSSegmentor3D< TPixel >::TImage

Definition at line 27 of file SFLSSegmentor3D.h.

template<typename TPixel >

typedef TImage::IndexType CSFLSSegmentor3D< TPixel >::TIndex

Reimplemented in CSFLSRobustStatSegmentor3DLabelMap< TPixel >.

Definition at line 38 of file SFLSSegmentor3D.h.

template<typename TPixel >

typedef TImage::RegionType CSFLSSegmentor3D< TPixel >::TRegion

Reimplemented in CSFLSRobustStatSegmentor3DLabelMap< TPixel >.

Definition at line 40 of file SFLSSegmentor3D.h.

template<typename TPixel >

typedef TImage::SizeType CSFLSSegmentor3D< TPixel >::TSize

Reimplemented in CSFLSRobustStatSegmentor3DLabelMap< TPixel >.

Definition at line 39 of file SFLSSegmentor3D.h.

template<typename TPixel >

typedef itk::Image<unsigned char, 3> CSFLSSegmentor3D< TPixel >::TUCharImage

Definition at line 31 of file SFLSSegmentor3D.h.

Constructor & Destructor Documentation

template<typename TPixel >

CSFLSSegmentor3D< TPixel >::CSFLSSegmentor3D ( )

template<typename TPixel >

virtual CSFLSSegmentor3D< TPixel >::~CSFLSSegmentor3D ( ) [inline, virtual]

Definition at line 43 of file SFLSSegmentor3D.h.

Member Function Documentation

template<typename TPixel >

void CSFLSSegmentor3D< TPixel >::basicInit ( )

Reimplemented in CSFLSRobustStatSegmentor3DLabelMap< TPixel >.

template<typename TPixel >

virtual void CSFLSSegmentor3D< TPixel >::computeForce ( ) [pure virtual]

Implemented in CSFLSRobustStatSegmentor3DLabelMap< TPixel >.

template<typename TPixel >

double CSFLSSegmentor3D< TPixel >::computeKappa	(	long	ix,
		long	iy,
		long	iz
	)

template<typename TPixel >

virtual void CSFLSSegmentor3D< TPixel >::doSegmenation ( ) [pure virtual]

Implemented in CSFLSRobustStatSegmentor3DLabelMap< TPixel >.

template<typename TPixel >

bool CSFLSSegmentor3D< TPixel >::doubleEqual	(	double	a,
		double	b,
		double	eps = `1e-10`
	)		`[inline, protected]`

Definition at line 150 of file SFLSSegmentor3D.h.

template<typename TPixel >

LSImageType::Pointer CSFLSSegmentor3D< TPixel >::getLevelSetFunction ( )

template<typename TPixel >

bool CSFLSSegmentor3D< TPixel >::getPhiOfTheNbhdWhoIsClosestToZeroLevelInLayerCloserToZeroLevel	(	long	ix,
		long	iy,
		long	iz,
		double &	thePhi
	)

template<typename TPixel >

void CSFLSSegmentor3D< TPixel >::getZeroLayerAtIteration ( unsigned long i )

template<typename TPixel >

void CSFLSSegmentor3D< TPixel >::initializeLabel ( )

template<typename TPixel >

void CSFLSSegmentor3D< TPixel >::initializePhi ( )

template<typename TPixel >

void CSFLSSegmentor3D< TPixel >::initializeSFLS ( ) [inline]

Definition at line 71 of file SFLSSegmentor3D.h.

template<typename TPixel >

void CSFLSSegmentor3D< TPixel >::initializeSFLSFromMask ( )

template<typename TPixel >

void CSFLSSegmentor3D< TPixel >::keepZeroLayerHistory ( bool b ) [inline]

Definition at line 91 of file SFLSSegmentor3D.h.

template<typename TPixel >

void CSFLSSegmentor3D< TPixel >::normalizeForce ( )

template<typename TPixel >

void CSFLSSegmentor3D< TPixel >::oneStepLevelSetEvolution ( )

template<typename TPixel >

void CSFLSSegmentor3D< TPixel >::setCurvatureWeight ( double a )

template<typename TPixel >

void CSFLSSegmentor3D< TPixel >::setImage ( typename ImageType::Pointer img )

template<typename TPixel >

void CSFLSSegmentor3D< TPixel >::setMask ( typename MaskImageType::Pointer mask )

template<typename TPixel >

void CSFLSSegmentor3D< TPixel >::setMaxRunningTime ( double t )

template<typename TPixel >

void CSFLSSegmentor3D< TPixel >::setMaxVolume ( double v )

template<typename TPixel >

void CSFLSSegmentor3D< TPixel >::setNumIter ( unsigned long n )

template<typename TPixel >

void CSFLSSegmentor3D< TPixel >::updateInsideVoxelCount ( ) [protected]

template<typename TPixel >

void CSFLSSegmentor3D< TPixel >::writeZeroLayerAtIterationToFile	(	unsigned long	i,
		const char *	name
	)

template<typename TPixel >

void CSFLSSegmentor3D< TPixel >::writeZeroLayerToFile ( const char * namePrefix )

Member Data Documentation

template<typename TPixel >

double CSFLSSegmentor3D< TPixel >::m_curvatureWeight [protected]

Definition at line 121 of file SFLSSegmentor3D.h.

template<typename TPixel >

bool CSFLSSegmentor3D< TPixel >::m_done [protected]

Definition at line 123 of file SFLSSegmentor3D.h.

template<typename TPixel >

double CSFLSSegmentor3D< TPixel >::m_dx [protected]

Definition at line 129 of file SFLSSegmentor3D.h.

template<typename TPixel >

double CSFLSSegmentor3D< TPixel >::m_dy [protected]

Definition at line 130 of file SFLSSegmentor3D.h.

template<typename TPixel >

double CSFLSSegmentor3D< TPixel >::m_dz [protected]

Definition at line 131 of file SFLSSegmentor3D.h.

template<typename TPixel >

std::vector<double> CSFLSSegmentor3D< TPixel >::m_force

Definition at line 115 of file SFLSSegmentor3D.h.

template<typename TPixel >

double CSFLSSegmentor3D< TPixel >::m_insideVolume [protected]

Definition at line 134 of file SFLSSegmentor3D.h.

template<typename TPixel >

long CSFLSSegmentor3D< TPixel >::m_insideVoxelCount [protected]

Definition at line 133 of file SFLSSegmentor3D.h.

template<typename TPixel >

bool CSFLSSegmentor3D< TPixel >::m_keepZeroLayerHistory [protected]

Definition at line 155 of file SFLSSegmentor3D.h.

template<typename TPixel >

CSFLSLayer CSFLSSegmentor3D< TPixel >::m_lIn2out [protected]

Definition at line 145 of file SFLSSegmentor3D.h.

template<typename TPixel >

CSFLSLayer CSFLSSegmentor3D< TPixel >::m_lOut2in [protected]

Definition at line 146 of file SFLSSegmentor3D.h.

template<typename TPixel >

double CSFLSSegmentor3D< TPixel >::m_maxRunningTime [protected]

Definition at line 137 of file SFLSSegmentor3D.h.

template<typename TPixel >

double CSFLSSegmentor3D< TPixel >::m_maxVolume [protected]

Definition at line 136 of file SFLSSegmentor3D.h.

template<typename TPixel >

unsigned long CSFLSSegmentor3D< TPixel >::m_numIter

Definition at line 119 of file SFLSSegmentor3D.h.

template<typename TPixel >

long CSFLSSegmentor3D< TPixel >::m_nx [protected]

Definition at line 125 of file SFLSSegmentor3D.h.

template<typename TPixel >

long CSFLSSegmentor3D< TPixel >::m_ny [protected]

Definition at line 126 of file SFLSSegmentor3D.h.

template<typename TPixel >

long CSFLSSegmentor3D< TPixel >::m_nz [protected]

Definition at line 127 of file SFLSSegmentor3D.h.

template<typename TPixel >

double CSFLSSegmentor3D< TPixel >::m_timeStep

Definition at line 117 of file SFLSSegmentor3D.h.

template<typename TPixel >

std::vector<CSFLSLayer> CSFLSSegmentor3D< TPixel >::m_zeroLayerHistory [protected]

Definition at line 156 of file SFLSSegmentor3D.h.

template<typename TPixel >

ImageType::Pointer CSFLSSegmentor3D< TPixel >::mp_img

Definition at line 109 of file SFLSSegmentor3D.h.

template<typename TPixel >

LabelImageType::Pointer CSFLSSegmentor3D< TPixel >::mp_label

Definition at line 110 of file SFLSSegmentor3D.h.

template<typename TPixel >

MaskImageType::Pointer CSFLSSegmentor3D< TPixel >::mp_mask

Definition at line 111 of file SFLSSegmentor3D.h.

template<typename TPixel >

LSImageType::Pointer CSFLSSegmentor3D< TPixel >::mp_phi

Definition at line 112 of file SFLSSegmentor3D.h.

The documentation for this class was generated from the following file:

Modules/CLI/RobustStatisticsSegmenter/SFLSSegmentor3D.h

Public Types

Public Member Functions

Public Attributes

Protected Member Functions

Protected Attributes

Detailed Description

template<typename TPixel> class CSFLSSegmentor3D< TPixel >

Member Typedef Documentation

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation

template<typename TPixel>
class CSFLSSegmentor3D< TPixel >