Documentation/4.1/SlicerApplication/LookupTables/Mori-Atlas labels

For the latest Slicer documentation, visit the read-the-docs.

Back to LUTs and Ontologies

• Standard color names and values: http://www.w3.org/TR/SVG/types.html#ColorKeywords
• Go here to create a text file in Slicer LUT format. WARNING: the conversion fails on the alpha channel if using rgba(R, G, B, 255) instead of rgb(R, G, B) or rgba(R, G, B, 1.0). If the last column of the generated text file contains 65025, change it to 255.
• Slicer3:Mori-Atlas_labels_JHU-MNI_SS_Type-I
• Slicer3:Mori_Atlas_labels_JHU-MNI_SS_Type-II
• Slicer3:Mori_Atlas_labels_JHU-MNI_SS_Type-III
• List

Look-up Table for the Mori WM Atlas labels

Work in progress.

integer_label	text_label	color
0	Background	rgba(0,0,0,0)
1	MCP_Middle_cerebellar_peduncle	gold
2	PCT_Pontine_crossing_tract_(a_part_of_MCP) genotype	navajowhite
3	GCC_Genu_of_corpus_callosum	plum
4	BCC_Body_of_corpus_callosum	pink
5	SCC_Splenium_of_corpus_callosum	deeppink
6	FX_Fornix_(column_and_body_of_fornix)	peru
7	CST-R_Corticospinal_tract_right	tan
8	CST-L_Corticospinal_tract_left	tan
9	ML-R_Medial_lemniscus_right	mediumspringgreen
10	ML-L_Medial_lemniscus_left	mediumspringgreen
11	ICP-R_Inferior_cerebellar_peduncle_right	palegreen
12	ICP-L_Inferior_cerebellar_peduncle_left	palegreen
13	SCP-R_Superior_cerebellar_peduncle_right	bisque
14	SCP-L_Superior_cerebellar_peduncle_left	bisque
15	CP-R_Cerebral_peduncle_right	khaki
16	CP-L_Cerebral_peduncle_left	khaki
17	ALIC-R_Anterior_limb_of_internal_capsule_right	lightskyblue
18	ALIC-L_Anterior_limb_of_internal_capsule_left	lightskyblue
19	PLIC-R_Posterior_limb_of_internal_capsule_right	dodgerblue
20	PLIC-L_Posterior_limb_of_internal_capsule_left	dodgerblue
21	RLIC-R_Retrolenticular_part_of_internal_capsule_right	deepskyblue
22	RLIC-L_Retrolenticular_part_of_internal_capsule_left	deepskyblue
23	ACR-R_Anterior_corona_radiata_right	powderblue
24	ACR-L_Anterior_corona_radiata_left	powderblue
25	SCR-R_Superior_corona_radiata_right	blue
26	SCR-L_Superior_corona_radiata_left	blue
27	PCR-R_Posterior_corona_radiata_right	skyblue
28	PCR-L_Posterior_corona_radiata_left	skyblue
29	PTR-R_Posterior_thalamic_radiation_(include_optic_radiation)_right	sandybrown
30	PTR-L_Posterior_thalamic_radiation_(include_optic_radiation)_left	sandybrown
31	SS-R_Sagittal_stratum_(include_inferior_longitidinal_fasciculus_and_inferior_fronto-occipital_fasciculus)_right	peachpuff
32	SS-L_Sagittal_stratum_(include_inferior_longitidinal_fasciculus_and_inferior_fronto-occipital_fasciculus)_left	peachpuff
33	EC-R_External_capsule_right	darksalmon
34	EC-L_External_capsule_left	darksalmon
35	CGC-R_Cingulum_(cingulate_gyrus)_right	mediumseagreen
36	CGC-L_Cingulum_(cingulate_gyrus)_left	mediumseagreen
37	CGH-R_Cingulum_(hippocampus)_right	darkkhaki
38	CGH-L_Cingulum_(hippocampus)_left	darkkhaki
39	FX-R_Fornix_Stria_terminalis_right	darkgoldenrod
40	FX-L_Fornix_Stria_terminalis_left	darkgoldenrod
41	SLF-R_Superior_longitudinal_fasciculus_right	lightgray
42	SLF-L_Superior_longitudinal_fasciculus_left	lightgray
43	SFO-R_Superior_fronto-occipital_fasciculus_right	darkgrey
44	SFO-R_Superior_fronto-occipital_fasciculus_left	darkgrey
45	IFO-R_Inferior_fronto-occipital_fasciculus_right	gray
46	IFO-L_Inferior_fronto-occipital_fasciculus_left	gray
47	UNC-R_Uncinate_fasciculus_right	brown
48	UNC-L_Uncinate_fasciculus_left	brown
49	TAP-R_Tapetum_right	mistyrose
50	TAP-L_Tapetum_left	mistyrose