Documentation/Nightly/Modules/TractographyDICOMSave

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Introduction and Acknowledgements

Title: Tractography DICOM Save Author(s)/Contributor(s): Isaiah Norton (BWH) License: 3D Slicer Contribution and Software License Agreement Acknowledgements: This work is funded by the National Institutes of Health through the National Cancer Institute Information Technology for Cancer Research program, Grant CA199459 Contact: <email>slicer-users@bwh.harvard.edu</email> Website: http://slicerdmri.github.io/

SlicerDMRI   Surgical Planning Laboratory   NAC

Module Description

Utility for conversion of Slicer-style VTK tractography to DICOM TrackSet.

Use Cases

Most frequently used for these scenarios:

• Use Case 1: Save DICOM format tractography files in 3D Slicer.
• Use Case 2: Convert vtk format tractography files to DICOM format on the command line.

Both use cases require a reference diffusion MRI DICOM scan. The reference scan must be the DICOM data from which the tractography was created.

Tutorials

Links to tutorials that use this module

Panels and their use

Parameters:

• IO: Input/output parameters
  • Fiber Bundle (vtk_fiberbundle): Input FiberBundle/VTK for conversion to DICOM TrackSet
  • Reference DICOM File (reference_dicom): Reference diffusion-weighted DICOM Files to associate with TrackSet.
  • Output Directory (output_directory): Output DICOM TrackSet Directory
  • Output Filename (output_filename): Output DICOM TrackSet File
• Advanced:
  • RAS to LPS (RAS_to_LPS): Change coordinate system from RAS (Slicer) to LPS (DICOM)
  • Algorithm Family (AlgorithmFamily): Supplement 181: MR Diffusion Tractography Algorithm Family
  • Laterality (Laterality): Track set laterality
  • Algorithm Name (AlgorithmName): Algorithm name
  • Algorithm Version (AlgorithmVersion): Algorithm version

List of parameters generated transforming this XML file using this XSL file. To update the URL of the XML file, edit this page.

Similar Modules

• TractographyDICOMLoad: https://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/TractographyDICOMLoad

References

• http://slicerdmri.github.io/

Information for Developers

• https://github.com/SlicerDMRI
• The CLI module is called: VTK_to_DICOMTract