Modules by name

150 modules:

ABC (cli, bundled in ABC extension)
ACPCTransform (cli, built-in)
Add Scalar Volumes (cli, built-in)
Airway Segmentation CLI (cli, bundled in Airway Segmentation extension)
Annotations (loadable, built-in)
Apply Matrix (cli, bundled in CMFreg extension)
Bin Shrink (cli, bundled in IASEM extension)
Body Centric Cubic Mesh (cli, bundled in CBC 3D I2MConversion extension)
BRAINSDemon Warp (cli, built-in)
BRAINSDWICleanup (cli, built-in)
BRAINSFit (cli, built-in)
BRAINSLabel Stats (cli, built-in)
BRAINSResample (cli, built-in)
BRAINSResize (cli, built-in)
BRAINSROIAuto (cli, built-in)
BRAINSTransform Convert (cli, built-in)
Carrera Slice (loadable, bundled in Carrera Slice extension)
Cast Scalar Volume (cli, built-in)
Change Tracker (scripted, bundled in Change Tracker extension)
Checker Board Filter (cli, built-in)
Cleaver CLI (cli, bundled in Cleaver Extension extension)
Colors (loadable, built-in)
Compare Volumes (scripted, bundled in CMFreg extension)
Corner Annotation (scripted, bundled in Corner Annotation extension)
Create DICOMSeries (cli, built-in)
Crop Volume (loadable, built-in)
Curvature Anisotropic Diffusion (cli, built-in)
Curve Maker (scripted, bundled in Curve Maker extension)
Data (loadable, built-in)
Data Probe (scripted, built-in)
Data Store (loadable, built-in)
Dice Computation (loadable, bundled in Dice Computation extension)
DICOM2Full Brain Tractography (scripted, built-in)
Diffusion Tensor Scalar Measurements (cli, built-in)
Diffusion Weighted Volume Masking (cli, built-in)
Dilate Label (cli, bundled in Erode Dilate Label extension)
Downsize (cli, bundled in CMFreg extension)
DWIConvert (cli, built-in)
DWIJoint Rician LMMSEFilter (cli, built-in)
DWIRician LMMSEFilter (cli, built-in)
DWITo DTIEstimation (cli, built-in)
Editor (scripted, built-in)
EMSegment (loadable, built-in)
EMSegment Command Line (cli, built-in)
EMSegment Quick (loadable, built-in)
EMSegment Transform To New Format (cli, built-in)
Endoscopy (scripted, built-in)
Erode Label (cli, bundled in Erode Dilate Label extension)
Extract Skeleton (cli, built-in)
Fast Grow Cut (loadable, bundled in Fast Grow Cut Effect extension)
Fast Grow Cut Segmenter (loadable, bundled in Carrera Slice extension)
Fiber Bundle Label Select (cli, built-in)
Fiber Bundle To Label Map (scripted, built-in)
Fiber Tract Measurements (cli, built-in)
Fiducial Registration (cli, built-in)
Finsler Backtracing (cli, bundled in Finsler Tractography extension)
Finsler Tractography (cli, bundled in Finsler Tractography extension)
Gaussian Blur Image Filter (cli, built-in)
Gel Dosimetry Analysis Algo (loadable, bundled in Gel Dosimetry Analysis extension)
Gradient Anisotropic Diffusion (cli, built-in)
Grayscale Fill Hole Image Filter (cli, built-in)
Grayscale Grind Peak Image Filter (cli, built-in)
Grayscale Model Maker (cli, built-in)
Growing (cli, bundled in CMFreg extension)
Gyro Guide (scripted, bundled in Gyro Guide extension)
Histogram Matching (cli, built-in)
IASEMImport (cli, bundled in IASEM extension)
IASEMImport Series (cli, bundled in IASEM extension)
IGR3D MABMIS Testing (cli, bundled in MABMIS extension)
IGR3D MABMIS Training (cli, bundled in MABMIS extension)
i Gyne (scripted, bundled in i Gyne extension)
Image Label Combine (cli, built-in)
Intensity Difference Metric (cli, bundled in Change Tracker extension)
Intensity Segmenter (cli, bundled in Intensity Segmenter extension)
KUtil (scripted, bundled in Carrera Slice extension)
Label Addition (cli, bundled in CMFreg extension)
Label Extraction (cli, bundled in CMFreg extension)
Label Map Smoothing (cli, built-in)
Label Object Statistics (scripted, bundled in IASEM extension)
Label Statistics (scripted, built-in)
Landmark Registration (scripted, bundled in CMFreg extension)
LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
Longitudinal PETCT (loadable, bundled in Longitudinal PETCT extension)
Markups (loadable, built-in)
Mask Creation (cli, bundled in CMFreg extension)
Mask Scalar Volume (cli, built-in)
Median Image Filter (cli, built-in)
Merge Models (cli, built-in)
Mesh Compression (cli, bundled in CBC 3D I2MConversion extension)
Metafile Importer (loadable, bundled in Multidim Data extension)
Model Maker (cli, built-in)
Models (loadable, built-in)
Model To Label Map (cli, built-in)
Multiply Scalar Volumes (cli, built-in)
Multi Volume Explorer (loadable, built-in)
Multi Volume Importer (scripted, built-in)
N4ITKBias Field Correction (cli, built-in)
Needle Finder (scripted, bundled in Needle Finder extension)
Non Growing (cli, bundled in CMFreg extension)
Open IGTLink IF (loadable, built-in)
Orient Scalar Volume (cli, built-in)
PBNRR (cli, bundled in PBNRR extension)
Percutaneous Approach Analysis (scripted, bundled in Percutaneous Approach Analysis extension)
Perform Metric Test (cli, built-in)
Perk Evaluator (loadable, bundled in Perk Tutor extension)
PETStandard Uptake Value Computation (cli, built-in)
PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
Pk Modeling (cli, bundled in Pk Modeling extension)
Port Placement (scripted, bundled in Port Placement extension)
Probe Volume With Model (cli, built-in)
Python Metrics Calculator (scripted, bundled in Perk Tutor extension)
Reformat (loadable, built-in)
Resample DTIVolume (cli, built-in)
Resample Scalar Vector DWIVolume (cli, built-in)
Robust Statistics Segmenter (cli, built-in)
Sample Data (scripted, built-in)
Scene Views (loadable, built-in)
Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)
Sequence Browser (loadable, bundled in Multidim Data extension)
Sequences (loadable, bundled in Multidim Data extension)
Simple Filters (scripted, built-in)
Simple Region Growing Segmentation (cli, built-in)
Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)
Sobolev Segmenter (cli, bundled in Sobolev Segmenter extension)
Spacing Aware Curvature Diffusion (cli, bundled in IASEM extension)
Spinal Curvature Measurement (scripted, bundled in Scoliosis extension)
Subject Hierarchy (loadable, built-in)
Subtract Scalar Volumes (cli, built-in)
Surface Registration (scripted, bundled in CMFreg extension)
SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
Swiss Skull Stripper (cli, bundled in Swiss Skull Stripper extension)
TCIABrowser (scripted, bundled in TCIABrowser extension)
Thingiverse Browser (scripted, bundled in Thingiverse Browser extension)
Threshold Scalar Volume (cli, built-in)
Tracker Stabilizer (loadable, bundled in Tracker Stabilizer extension)
Tractography Display (loadable, built-in)
Tractography Interactive Seeding (loadable, built-in)
Tractography Label Map Seeding (cli, built-in)
Transform Recorder (loadable, bundled in Perk Tutor extension)
Transforms (loadable, built-in)
Units (loadable, built-in)
VBRAINSDemon Warp (cli, built-in)
View Controllers (loadable, built-in)
Volume Rendering (loadable, built-in)
Volumes (loadable, built-in)
Voting Binary Hole Filling Image Filter (cli, built-in)
Welcome (loadable, built-in)
Window Level Effect (scripted, bundled in Window Level Effect extension)
Workflow Segmentation (loadable, bundled in Perk Tutor extension)
Xnat Slicer (scripted, bundled in XNATSlicer extension)

Modules by category

30 categories:

BRAINS
- Label Statistics
CMF Registration
- Voxelbase Registration
Converters
Developer Tools
- DICOM Plugins
- Editor Extensions
- Matlab
Diffusion
- Diffusion Data Conversion
- Diffusion Tensor Images
- Diffusion Weighted Images
- Tractography
Editor Effects
Endoscopy
Examples
Exporter
Filtering
- Arithmetic
- Denoising
- Morphology
IGT
Informatics
Legacy
- Converters
- Diffusion
  - Denoising
  - Diffusion Data Conversion
- Filtering
- Registration
- Work in Progress
  - Diffusion Tensor
    - Test
Mesh Generation
Mesh Generation
Microscopy
Multidimensional data
Multi Volume Support
Perk Tutor
Quantification
- Change Quantification
Registration
- Specialized
Segmentation
- Specialized
Slicelets
Surface Models
Testing
- Test Cases
Unspecified
Utilities
- BRAINS
Wizards
Work in Progress
- Informatics
  - Test Cases
XNATSlicer

BRAINS

LabelStatistics

BRAINSLabel Stats

CMF Registration

Voxelbase Registration

Converters

Developer Tools

DICOM Plugins

DICOMRWVMPlugin
DICOMLongitudinal PETCTPlugin
Multi Volume Importer Plugin
DICOMPETSUVPlugin
DICOMDiffusion Volume Plugin
DICOMScalar Volume Plugin
DICOMSlicer Data Bundle Plugin

Editor Extensions

Matlab

Diffusion

Tractography Display
DICOM2Full Brain Tractography

Diffusion Data Conversion

DWIConvert

Diffusion Tensor Images

Resample DTIVolume
Diffusion Tensor Scalar Measurements
Tractography Label Map Seeding
Fiber Tract Measurements
Tractography Interactive Seeding

Diffusion Weighted Images

Tractography

Fiber Bundle To Label Map
Fiber Bundle Label Select

Editor Effects

Window Level Effect

Endoscopy

Endoscopy

Examples

Exporter

Slicer To Kiwi Exporter

Filtering

Arithmetic

Denoising

Morphology

IGT

Informatics

Legacy

Converters

BSpline To Deformation Field

Diffusion

Denoising

DWIUnbiased Non Local Means Filter

Diffusion Data Conversion

DTIimport
DTIexport

Filtering

Registration

Test Grid Transform Registration
Expert Automated Registration

Work in Progress

Diffusion Tensor

Test

Diffusion Tensor Test

Mesh Generation

Cleaver CLI

MeshGeneration

Microscopy

Multidimensional data

MultiVolume Support

Perk Tutor

Quantification

ChangeQuantification

Intensity Difference Metric

Registration

Transforms
BRAINSResize
Perform Metric Test
BRAINSFit
PBNRR
BRAINSResample

Specialized

Segmentation

Specialized

EMSegment Command Line
Robust Statistics Segmenter
BRAINSROIAuto

Slicelets

Gel Dosimetry Analysis Algo

Surface Models

Testing

Self Tests
CLIROITest
CLI4Test
Threshold Threading Test
Scoliosis Monitoring
Performance Tests
Slicer MRBTest

TestCases

Slice Link Logic
Atlas Tests
RSNAQuant Tutorial
Volume Rendering Scene Close
test tractography display
slicer Close Crash Bug2590
Charting
Scene Performance
Markups In Compare Viewers Self Test
fiber visibility crash2438
scene Import2428
RSNAVis Tutorial
JRC2013Vis
RSNA2012Prostate Demo
Add Many Markups Fiducial Test
Neurosurgical Planning Tutorial Markups Self Test
Markups In Views Self Test
Change Tracker Self Test
Fiducial Layout Switch Bug1914
View Controllers Slice Interpolation Bug1926
Slicer4Minute
label Toggle Bug2049

Unspecified

BRAINSDWICleanup

Utilities

Thingiverse Browser
EMSegment Transform To New Format
Data Store

BRAINS

BRAINSTransform Convert

Wizards

Work in Progress

Longitudinal PETCT

Informatics

TestCases

Reporting Self Test

XNATSlicer

Xnat Slicer

Modules by contributing organization

60 contributing organizations:

Asclepios INRIA
AZE R&D
Brigham and Women's Hospital
BWH
BWH, SPL
BWH, SUMS
BWH/UAB
College of Information Engineering, Zhejiang University of Technology, Hangzhou, China); Xiaolei Chen, Jiashu Zhang(Department of Neurosurgery, PLA General Hospital, Beijing, China
CRTC
gatech
GE
Georgia Institute of Technology
Georgia Tech
IBM
Isomics
Isomics Inc.
Isomics, Inc.
Isomics, pieper@isomics.com
Kitware
Kitware)
MGH
Moka Creative, LLC, kumar.sunil.p@gmail.com
MSC/NLM
Noware
Perk Lab at Queen's University
Perk Lab, Queen's
Perk Lab, Queen's University
PMH
Queen's
Queen's University
Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto
SAIC-Frederick, NCI-Frederick
SBU
SCI Institute
Shiga University of Medical Science, Japan, SPL
SNR
SPL
SPL B&W Harvard
SPL, BWH
SPL, BWH, UPenn
Stony Brook University
SUMS
UAB
Uiowa
UIowa
UNC
Univ of Michigan
Univ. of Iowa
University College Cork
University of Alabama Birmingham
University of Heidelberg
University of Iowa
University of Iowa) and Andrey Fedorov (SPL
UPenn
Utah
UVa
UWA
Wash U-St. Louis, dmarcus@wustl.edu
while at GE

Asclepios INRIA

PBNRR (cli, bundled in PBNRR extension)

AZE R&D

JRC2013Vis

Brigham and Women's Hospital

Corner Annotation (scripted, bundled in Corner Annotation extension)
test tractography display

BWH

Add Many Markups Fiducial Test
Change Tracker Self Test
Curve Maker (scripted, bundled in Curve Maker extension)
Dice Computation (loadable, bundled in Dice Computation extension)
DICOMRWVMPlugin
Fast Grow Cut Effect (scripted, bundled in Fast Grow Cut Effect extension)
Fiducial Layout Switch Bug1914
Markups (loadable, built-in)
Markups In Compare Viewers Self Test
Markups In Views Self Test
Neurosurgical Planning Tutorial Markups Self Test
Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)
Volume Rendering Scene Close (scripted, built-in)
Window Level Effect (scripted, bundled in Window Level Effect extension)

BWH, SPL

Crop Volume (loadable, built-in)

BWH, SUMS

Corner Annotation (scripted, bundled in Corner Annotation extension)

BWH/UAB

Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)

College of Information Engineering, Zhejiang University of Technology, Hangzhou, China); Xiaolei Chen, Jiashu Zhang(Department of Neurosurgery, PLA General Hospital, Beijing, China

Gyro Guide (scripted, bundled in Gyro Guide extension)

CRTC

Body Centric Cubic Mesh (cli, bundled in CBC 3D I2MConversion extension)
Mesh Compression (cli, bundled in CBC 3D I2MConversion extension)
PBNRR (cli, bundled in PBNRR extension)

gatech

Robust Statistics Segmenter (cli, built-in)

GE

Add Scalar Volumes (cli, built-in)
Charting (scripted, built-in)
Checker Board Filter (cli, built-in)
Create DICOMSeries (cli, built-in)
Curvature Anisotropic Diffusion (cli, built-in)
Diffusion Tensor Test (cli, built-in)
DWIConvert (cli, built-in)
Execution Model Tour (cli, built-in)
Gradient Anisotropic Diffusion (cli, built-in)
Grayscale Fill Hole Image Filter (cli, built-in)
Grayscale Grind Peak Image Filter (cli, built-in)
Grayscale Model Maker (cli, built-in)
Histogram Matching (cli, built-in)
Label Map Smoothing (cli, built-in)
Median Image Filter (cli, built-in)
Model Maker (cli, built-in)
Model To Label Map (cli, built-in)
Multiply Scalar Volumes (cli, built-in)
Orient Scalar Volume (cli, built-in)
Otsu Threshold Image Filter (cli, built-in)
Pk Modeling (cli, bundled in Pk Modeling extension)
Resample Scalar Volume (cli, built-in)
Simple Region Growing Segmentation (cli, built-in)
Slice Link Logic (scripted, built-in)
Slicer4Minute (scripted, built-in)
Spacing Aware Curvature Diffusion (cli, bundled in IASEM extension)
Subtract Scalar Volumes (cli, built-in)
View Controllers (loadable, built-in)
View Controllers Slice Interpolation Bug1926
Voting Binary Hole Filling Image Filter (cli, built-in)

Georgia Institute of Technology

Carrera Slice Effect (scripted, bundled in Carrera Slice extension)

Georgia Tech

Carrera Slice (loadable, bundled in Carrera Slice extension)

IBM

Annotations (loadable, built-in)

Isomics

Atlas Tests
Binary Watershed Effect (scripted, bundled in IASEM extension)
Compare Volumes (scripted, bundled in CMFreg extension)
Data (loadable, built-in)
Data Probe (scripted, built-in)
Editor (scripted, built-in)
Endoscopy (scripted, built-in)
fiber visibility crash2438
Fiber Bundle To Label Map (scripted, built-in)
Label Statistics (scripted, built-in)
label Toggle Bug2049
Landmark Registration (scripted, bundled in CMFreg extension)
Models (loadable, built-in)
Performance Tests
RSNA2012Prostate Demo
RSNAQuant Tutorial
RSNAVis Tutorial
Sample Data (scripted, built-in)
scene Import2428
Self Tests
Simple Filters (scripted, built-in)
slicer Close Crash Bug2590
Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)
Tractography Interactive Seeding (loadable, built-in)
Transforms (loadable, built-in)
View Controllers (loadable, built-in)
Volume Rendering (loadable, built-in)
Volumes (loadable, built-in)

Isomics Inc.

DICOMDiffusion Volume Plugin
DICOMLongitudinal PETCTPlugin
DICOMScalar Volume Plugin
DICOMSlicer Data Bundle Plugin
Slicer MRBTest
Threshold Threading Test

Isomics, Inc.

Carrera Slice Effect (scripted, bundled in Carrera Slice extension)

Isomics, pieper@isomics.com

Xnat Slicer (scripted, bundled in XNATSlicer extension)

Kitware

Cameras (loadable, built-in)
Colors (loadable, built-in)
Data (loadable, built-in)
Data Store (loadable, built-in)
Double Arrays (loadable, built-in)
Event Broker
Expert Automated Registration (cli, built-in)
Extension Wizard (scripted, built-in)
Extract Skeleton (cli, built-in)
Fast Grow Cut (loadable, bundled in Fast Grow Cut Effect extension)
Fast Grow Cut Segmenter (loadable, bundled in Carrera Slice extension)
fiber visibility crash2438
Fiducial Registration (cli, built-in)
Gaussian Blur Image Filter (cli, built-in)
Image Maker (cli, bundled in Image Maker extension)
label Toggle Bug2049
Matlab Commander (cli, bundled in Matlab Bridge extension)
Matlab Module Generator (loadable, bundled in Matlab Bridge extension)
Models (loadable, built-in)
Multi Volume Explorer (loadable, built-in)
Multi Volume Importer (scripted, built-in)
Port Placement (scripted, bundled in Port Placement extension)
Reformat (loadable, built-in)
Sample Data (scripted, built-in)
Scene Performance (scripted, built-in)
Simple Filters (scripted, built-in)
Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)
Threshold Scalar Volume (cli, built-in)
Tractography Display (loadable, built-in)
Transforms (loadable, built-in)
Units (loadable, built-in)
View Controllers (loadable, built-in)
Volume Rendering (loadable, built-in)
Volumes (loadable, built-in)
Welcome (loadable, built-in)

Kitware)

Finsler Backtracing (cli, bundled in Finsler Tractography extension)
Finsler Tractography (cli, bundled in Finsler Tractography extension)

MGH

Pk Modeling (cli, bundled in Pk Modeling extension)

Moka Creative, LLC, kumar.sunil.p@gmail.com

Xnat Slicer (scripted, bundled in XNATSlicer extension)

MSC/NLM

Label Object Statistics (scripted, bundled in IASEM extension)
Simple Filters (scripted, built-in)

Noware

Swiss Skull Stripper (cli, bundled in Swiss Skull Stripper extension)

PerkLab at Queen's University

Py Dev Remote Debug (scripted, bundled in Py Dev Remote Debug extension)

PerkLab, Queen's

Metafile Importer (loadable, bundled in Multidim Data extension)
Sequence Browser (loadable, bundled in Multidim Data extension)
Sequences (loadable, bundled in Multidim Data extension)
Transforms (loadable, built-in)

PerkLab, Queen's University

Matlab Commander (cli, bundled in Matlab Bridge extension)
Matlab Module Generator (loadable, bundled in Matlab Bridge extension)

PMH

Sequence Browser (loadable, bundled in Multidim Data extension)
Sequences (loadable, bundled in Multidim Data extension)

Queen's

Data (loadable, built-in)
Gel Dosimetry Analysis Algo (loadable, bundled in Gel Dosimetry Analysis extension)
Subject Hierarchy (loadable, built-in)

Queen's University

Perk Evaluator (loadable, bundled in Perk Tutor extension)
Python Metrics Calculator (scripted, bundled in Perk Tutor extension)
Scoliosis Monitoring (scripted, bundled in Scoliosis extension)
Spinal Curvature Measurement (scripted, bundled in Scoliosis extension)
Transform Recorder (loadable, bundled in Perk Tutor extension)
Workflow Segmentation (loadable, bundled in Perk Tutor extension)

Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto

Matlab Commander (cli, bundled in Matlab Bridge extension)
Matlab Module Generator (loadable, bundled in Matlab Bridge extension)

SAIC-Frederick, NCI-Frederick

Volume Rendering (loadable, built-in)

SBU

LAScar Segmenter (cli, bundled in LAScar Segmenter extension)

SCI Institute

Cleaver CLI (cli, bundled in Cleaver Extension extension)

Shiga University of Medical Science, Japan, SPL

Percutaneous Approach Analysis (scripted, bundled in Percutaneous Approach Analysis extension)

SNR

Tracker Stabilizer (loadable, bundled in Tracker Stabilizer extension)

SPL

DICOM2Full Brain Tractography (scripted, built-in)
Percutaneous Approach Analysis (scripted, bundled in Percutaneous Approach Analysis extension)
Pk Modeling (cli, bundled in Pk Modeling extension)
Reporting Self Test
Tracker Stabilizer (loadable, bundled in Tracker Stabilizer extension)

SPL B&W Harvard

PBNRR (cli, bundled in PBNRR extension)

SPL, BWH

ACPCTransform (cli, built-in)
Annotations (loadable, built-in)
BSpline To Deformation Field (cli, built-in)
Cast Scalar Volume (cli, built-in)
Colors (loadable, built-in)
Data (loadable, built-in)
Diffusion Tensor Scalar Measurements (cli, built-in)
Diffusion Weighted Volume Masking (cli, built-in)
DTIexport (cli, built-in)
DTIimport (cli, built-in)
DWITo DTIEstimation (cli, built-in)
Fiber Tract Measurements (cli, built-in)
Fiducial Registration (cli, built-in)
Grayscale Model Maker (cli, built-in)
Image Label Combine (cli, built-in)
Mask Scalar Volume (cli, built-in)
Merge Models (cli, built-in)
Model Maker (cli, built-in)
Models (loadable, built-in)
Model To Label Map (cli, built-in)
Multi Volume Explorer (loadable, built-in)
Multi Volume Importer (scripted, built-in)
N4ITKBias Field Correction (cli, built-in)
PETStandard Uptake Value Computation (cli, built-in)
PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
Probe Volume With Model (cli, built-in)
Robust Statistics Segmenter (cli, built-in)
Scene Views (loadable, built-in)
SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
TCIABrowser (scripted, bundled in TCIABrowser extension)
Test Grid Transform Registration (cli, built-in)
Threshold Scalar Volume (cli, built-in)
Tractography Label Map Seeding (cli, built-in)
View Controllers (loadable, built-in)
Volume Rendering (loadable, built-in)
Volumes (loadable, built-in)
Welcome (loadable, built-in)

SPL, BWH, UPenn

Merge Models (cli, built-in)

Stony Brook University

Carrera Slice Effect (scripted, bundled in Carrera Slice extension)
Fast Grow Cut Effect (scripted, bundled in Fast Grow Cut Effect extension)

SUMS

Corner Annotation (scripted, bundled in Corner Annotation extension)

UAB

LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)
Sobolev Segmenter (cli, bundled in Sobolev Segmenter extension)

Uiowa

DWIConvert (cli, built-in)

UIowa

DWIConvert (cli, built-in)

UNC

DWIRician LMMSEFilter (cli, built-in)
Extract Skeleton (cli, built-in)
Intensity Segmenter (cli, bundled in Intensity Segmenter extension)
Port Placement (scripted, bundled in Port Placement extension)
Resample DTIVolume (cli, built-in)
Resample Scalar Vector DWIVolume (cli, built-in)

Univ of Michigan

Surface Registration (scripted, bundled in CMFreg extension)

Univ. of Iowa

University College Cork

Airway Segmentation CLI (cli, bundled in Airway Segmentation extension)

University of Alabama Birmingham

Carrera Slice Effect (scripted, bundled in Carrera Slice extension)
Fast Grow Cut Effect (scripted, bundled in Fast Grow Cut Effect extension)

University of Heidelberg

Longitudinal PETCT (loadable, bundled in Longitudinal PETCT extension)

University of Iowa

PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)

University of Iowa) and Andrey Fedorov (SPL

Longitudinal PETCT (loadable, bundled in Longitudinal PETCT extension)

UPenn

Annotations (loadable, built-in)
EMSegment (loadable, built-in)
N4ITKBias Field Correction (cli, built-in)
Scene Views (loadable, built-in)

Utah

Label Map Smoothing (cli, built-in)
LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)

UVa

DWIJoint Rician LMMSEFilter (cli, built-in)
DWIRician LMMSEFilter (cli, built-in)
DWIUnbiased Non Local Means Filter (cli, built-in)

UWA

Thingiverse Browser (scripted, bundled in Thingiverse Browser extension)

WashU-St. Louis, dmarcus@wustl.edu

Xnat Slicer (scripted, bundled in XNATSlicer extension)

while at GE

Pk Modeling (cli, bundled in Pk Modeling extension)

Modules by contributing individual

146 contributing individuals:

Akila Viswanathan
Alan Morris (Utah)
Alex Yarmakovich (Isomics)
Alex Yarmarkovich (Kitware))
Ali Ghayoor
Alireza Mehrtash (SPL and BWH)
Allen Tannenbaum (Stony Brook University)
Analysis Laboratory
Andinet Enquobahrie (Kitware)
Andras Lasso (PerkLab, Queen's University)
Andreas Freudling (SPL, BWH)
Andrey Fedorov (SPL B&W Harvard)
Andriy Kot (CRTC)
Anonymous
Antonio Damato
Antonio Tristan Vega (UVa)
Arie Nakhmani (UAB)
Atsushi Yamada (SUMS)
Beatriz Paniagua from Department of Orthodontics (UNC)
Benjamin Long (Kitware)
Bill Lorensen (Noware)
Brad Davis
Bradley Lowekamp (MSC/NLM)
BWH
Carl-Fredrik Westin. The directional iterators were contributed by Luis Ibanez (Kitware))
Casey B Goodlett (Kitware)
Charles Marion (Kitware)
Csaba Pinter (PerkLab, Queen's University)
Dan Marcus (Washington University in St. Louis)
Daniel Blezek (GE)
Daniel Haehn (UPenn)
Danny Perry (Utah)
Demian Wassermann (Brigham and Women's Hospital)
Dinggang Shen (UNC)
Dirk Padfield (GE)
Dominik Meier (SPL, BWH)
Ethan Ulrich (Univ. of Iowa)
ez (UVa)
Fotis Drakopoulos (CRTC)
Francois Budin (NIRAL, UNC)
Franklin King (PerkLab, Queen's University)
Greg Gardner (Utah)
Greg Harris
Guido Gerig (UNC)
Guillaume Pernelle
Hans J. Johnson
Hans Johnson (UIowa)
hans-johnson -at- uiowa.edu
http://www.psychiatry.uiowa.edu
Ivan Kolesov (Stony Brook University)
Jan Egger
Jayender Jagadeesan (BWH)
Jean-Baptiste Berger (Kitware)
Jean-Christophe Fillion-Robin (Kitware)
Jim Miller (GE)
Johan Andruejol (Kitware)
John Evans (MGH)
Jonathan Bronson (SCI Institute)
Josh Cates (Utah)
Joy Matsui (UIowa)
Julien Finet (Kitware)
Julien Jomier (Kitware)
Junichi Tokuda (BWH)
Kent Williams (UIowa)
Kevin Wang (Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto)
Kilian Pohl (UPenn)
Koichiro Murakami (BWH, SUMS)
Lauren Barber
Lauren O'Donnell (SPL, BWH)
Laurent Chauvin (BWH)
Liang-Jia Zhu (UAB)
Liangjia Zhu (Stony Brook University)
Luis G. Torres (UNC)
Luping Fang (College of Information Engineering, Zhejiang University of Technology, Hangzhou, China)
Marc Niethammer (UNC)
Marcel Prastawa prastawa@sci.utah.edu
Mark Scully (Uiowa)
Markus Van Tol (University of Iowa) and Andrey Fedorov (SPL)
Martin Styner (UNC)
Mason Winsauer
Matthew Holden (Queen's University)
Matthew S. Holden (Queen's University)
Matthew Woehlke (Kitware)
Michael Jeulin-Lagarrigue (Kitware)
Minjeong Kim (UNC)
Nabgha Fahrat
Neuro Image Resarch
Nicholas Herlambang (AZE R&D)
Nick Tustison (UPenn)
Nicole Aucoin (BWH)
Nigel Goh (UWA)
Nikos Chrisochoides (CRTC)
Olivier Clatz (Asclepios INRIA) and Nikos Chrisochoides (CRTC)
Pat Marion (Kitware)
Patricio Vela (Georgia Institute of Technology)
Paul Mercea (University of Heidelberg)
Pengdong Xiao (Department of Orthodontics, UNC)
Peter Black (BWH)
Peter Karasev (Georgia Tech)
Peter Savadjiev (Kitware))
Pierre Seroul (UNC)
Pietro Nardelli (University College Cork)
Polina Goll
Qing Pan (College of Information Engineering, Zhejiang University of Technology, Hangzhou, China)
Raul San Jose (SPL, BWH)
Rob Mac Leod (Utah)
Ron Kikinis (BWH)
Ross Whitaker (Utah)
Ruifeng Chen (College of Information Engineering, Zhejiang University of Technology, Hangzhou, China)
S
Sam Song
Santiago Aja Fern (UVa)
Sebastien Barré (Kitware)
Sebastien Barre
Shigeyuki Naka (SUMS)
Soichiro Tani (SUMS)
Sonia Pujol (SPL, BWH)
Stephen Aylward (Kitware)
Stephen R Aylward (Kitware)
Steve Pieper (Isomics Inc.)
Sunil Kumar (Moka Creative, LLC, kumar.sunil.p@gmail.com)
Sylvain Bouix (BWH)
Tamas Ungi (PerkLab, Queen's University)
the University of North Carolina at Chapel Hill (UNC)
Tina Kapur
Tobias Penzkofer
Tohru Tani (SUMS)
UNC Medical School
Uof M School of Dentistry
Uof M School Of Dentistry
Vince Magnotta (UIowa)
Vincent A. Magnotta
Vincent Magnotta
Vinicius Boen (Univ of Michigan)
Wendy Plesniak (SPL, BWH)
Xiaodong Tao (GE)
Xiaofeng Liu (GE GLobal Research)
Xiaojun Chen
y Wells
Yanling Liu (SAIC-Frederick, NCI-Frederick)
Yi Gao (BWH/UAB)
Yinglin Lee (SPL, BWH)
Yingxuan Zhu (GE)
Yixun Liu (CRTC)
Yong Zhang (IBM)
Yumin Yuan

Akila Viswanathan

i Gyne (scripted, bundled in i Gyne extension)
Needle Finder (scripted, bundled in Needle Finder extension)

Alan Morris

LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)

Alex Yarmakovich

Models (loadable, built-in)
Tractography Interactive Seeding (loadable, built-in)

Alex Yarmarkovich

Data (loadable, built-in)
Fiber Tract Measurements (cli, built-in)
Finsler Backtracing (cli, bundled in Finsler Tractography extension)
Finsler Tractography (cli, bundled in Finsler Tractography extension)
Image Label Combine (cli, built-in)
Transforms (loadable, built-in)
Volume Rendering (loadable, built-in)
Volumes (loadable, built-in)

Ali Ghayoor

BRAINSTransform Convert (cli, built-in)
Perform Metric Test (cli, built-in)

Alireza Mehrtash

i Gyne (scripted, bundled in i Gyne extension)
Needle Finder (scripted, bundled in Needle Finder extension)
TCIABrowser (scripted, bundled in TCIABrowser extension)

Allen Tannenbaum

Carrera Slice Effect (scripted, bundled in Carrera Slice extension)
Fast Grow Cut Effect (scripted, bundled in Fast Grow Cut Effect extension)
LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
Robust Statistics Segmenter (cli, built-in)
Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)
Sobolev Segmenter (cli, bundled in Sobolev Segmenter extension)

Analysis Laboratory

Apply Matrix (cli, bundled in CMFreg extension)
Downsize (cli, bundled in CMFreg extension)
Growing (cli, bundled in CMFreg extension)
Label Addition (cli, bundled in CMFreg extension)
Label Extraction (cli, bundled in CMFreg extension)
Mask Creation (cli, bundled in CMFreg extension)
Non Growing (cli, bundled in CMFreg extension)

Andinet Enquobahrie

Port Placement (scripted, bundled in Port Placement extension)

Andras Lasso

Matlab Commander (cli, bundled in Matlab Bridge extension)
Matlab Module Generator (loadable, bundled in Matlab Bridge extension)
Metafile Importer (loadable, bundled in Multidim Data extension)
Py Dev Remote Debug (scripted, bundled in Py Dev Remote Debug extension)
Sequence Browser (loadable, bundled in Multidim Data extension)
Sequences (loadable, bundled in Multidim Data extension)
Transforms (loadable, built-in)

Andreas Freudling

Volume Rendering (loadable, built-in)

Andrey Fedorov

Body Centric Cubic Mesh (cli, bundled in CBC 3D I2MConversion extension)
BSpline To Deformation Field (cli, built-in)
Change Tracker (scripted, bundled in Change Tracker extension)
Change Tracker Self Test
Crop Volume (loadable, built-in)
DICOMRWVMPlugin
Intensity Difference Metric (cli, bundled in Change Tracker extension)
Mesh Compression (cli, bundled in CBC 3D I2MConversion extension)
Multi Volume Explorer (loadable, built-in)
Multi Volume Importer (scripted, built-in)
Multi Volume Importer Plugin
N4ITKBias Field Correction (cli, built-in)
PBNRR (cli, bundled in PBNRR extension)
Pk Modeling (cli, bundled in Pk Modeling extension)
Reporting Self Test
SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
TCIABrowser (scripted, bundled in TCIABrowser extension)
Window Level Effect (scripted, bundled in Window Level Effect extension)

Andriy Kot

PBNRR (cli, bundled in PBNRR extension)

Anonymous

CLIROITest (cli, built-in)
EMSegment Transform To New Format (cli, built-in)

Antonio Damato

i Gyne (scripted, bundled in i Gyne extension)
Needle Finder (scripted, bundled in Needle Finder extension)

Antonio Tristan Vega

DWIJoint Rician LMMSEFilter (cli, built-in)
DWIRician LMMSEFilter (cli, built-in)
DWIUnbiased Non Local Means Filter (cli, built-in)
Finsler Backtracing (cli, bundled in Finsler Tractography extension)
Finsler Tractography (cli, bundled in Finsler Tractography extension)

Arie Nakhmani

Sobolev Segmenter (cli, bundled in Sobolev Segmenter extension)

Atsushi Yamada

Corner Annotation (scripted, bundled in Corner Annotation extension)

Beatriz Paniagua from Department of Orthodontics

Intensity Segmenter (cli, bundled in Intensity Segmenter extension)

Benjamin Long

Sample Data (scripted, built-in)

Bill Lorensen

Add Scalar Volumes (cli, built-in)
Checker Board Filter (cli, built-in)
Create DICOMSeries (cli, built-in)
Curvature Anisotropic Diffusion (cli, built-in)
Diffusion Tensor Test (cli, built-in)
Execution Model Tour (cli, built-in)
Gradient Anisotropic Diffusion (cli, built-in)
Grayscale Fill Hole Image Filter (cli, built-in)
Grayscale Grind Peak Image Filter (cli, built-in)
Grayscale Model Maker (cli, built-in)
Histogram Matching (cli, built-in)
Median Image Filter (cli, built-in)
Model Maker (cli, built-in)
Multiply Scalar Volumes (cli, built-in)
Orient Scalar Volume (cli, built-in)
Otsu Threshold Image Filter (cli, built-in)
Resample Scalar Volume (cli, built-in)
Spacing Aware Curvature Diffusion (cli, bundled in IASEM extension)
Subtract Scalar Volumes (cli, built-in)
Swiss Skull Stripper (cli, bundled in Swiss Skull Stripper extension)
Voting Binary Hole Filling Image Filter (cli, built-in)

Brad Davis

EMSegment Command Line (cli, built-in)

Bradley Lowekamp

Bin Shrink (cli, bundled in IASEM extension)
Double Threshold Effect (scripted, bundled in IASEM extension)
IASEMImport (cli, bundled in IASEM extension)
IASEMImport Series (cli, bundled in IASEM extension)
Label Object Statistics (scripted, bundled in IASEM extension)
Simple Filters (scripted, built-in)
Spacing Aware Curvature Diffusion (cli, bundled in IASEM extension)

BWH

Multi Volume Importer Plugin

Carl-Fredrik Westin. The directional iterators were contributed by Luis Ibanez

Finsler Backtracing (cli, bundled in Finsler Tractography extension)
Finsler Tractography (cli, bundled in Finsler Tractography extension)

Casey B Goodlett

Expert Automated Registration (cli, built-in)
Fiducial Registration (cli, built-in)

Charles Marion

Data Store (loadable, built-in)

Csaba Pinter

Data (loadable, built-in)
Gel Dosimetry Analysis Algo (loadable, bundled in Gel Dosimetry Analysis extension)
Subject Hierarchy (loadable, built-in)

Dan Marcus

Xnat Slicer (scripted, bundled in XNATSlicer extension)

Daniel Blezek

Execution Model Tour (cli, built-in)

Daniel Haehn

Annotations (loadable, built-in)
EMSegment (loadable, built-in)
EMSegment Command Line (cli, built-in)
Merge Models (cli, built-in)
Scene Views (loadable, built-in)

Danny Perry

LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)

Demian Wassermann

DICOM2Full Brain Tractography (scripted, built-in)
Diffusion Weighted Volume Masking (cli, built-in)
Fiber Bundle Label Select (cli, built-in)
Finsler Backtracing (cli, bundled in Finsler Tractography extension)
Finsler Tractography (cli, bundled in Finsler Tractography extension)
test tractography display
Tractography Label Map Seeding (cli, built-in)

Dinggang Shen

IGR3D MABMIS Testing (cli, bundled in MABMIS extension)
IGR3D MABMIS Training (cli, bundled in MABMIS extension)

Dirk Padfield

Label Map Smoothing (cli, built-in)

Dominik Meier

Fiducial Registration (cli, built-in)

Ethan Ulrich

DICOMPETSUVPlugin
DICOMRWVMPlugin
SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)

ez

DWIJoint Rician LMMSEFilter (cli, built-in)
DWIRician LMMSEFilter (cli, built-in)
DWIUnbiased Non Local Means Filter (cli, built-in)

Fotis Drakopoulos

Body Centric Cubic Mesh (cli, bundled in CBC 3D I2MConversion extension)
Mesh Compression (cli, bundled in CBC 3D I2MConversion extension)
PBNRR (cli, bundled in PBNRR extension)

Francois Budin

Intensity Segmenter (cli, bundled in Intensity Segmenter extension)
Resample DTIVolume (cli, built-in)
Resample Scalar Vector DWIVolume (cli, built-in)

Franklin King

Scoliosis Monitoring (scripted, bundled in Scoliosis extension)
Spinal Curvature Measurement (scripted, bundled in Scoliosis extension)
Transforms (loadable, built-in)

Greg Gardner

LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)

Greg Harris

BRAINSDemon Warp (cli, built-in)
BRAINSResample (cli, built-in)
VBRAINSDemon Warp (cli, built-in)

Guido Gerig

Extract Skeleton (cli, built-in)

Guillaume Pernelle

i Gyne (scripted, bundled in i Gyne extension)
Needle Finder (scripted, bundled in Needle Finder extension)

Hans J. Johnson

BRAINSDemon Warp (cli, built-in)
BRAINSFit (cli, built-in)
BRAINSROIAuto (cli, built-in)
BRAINSTransform Convert (cli, built-in)
VBRAINSDemon Warp (cli, built-in)

Hans Johnson

BRAINSResample (cli, built-in)
BRAINSResize (cli, built-in)
DWIConvert (cli, built-in)
PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)

hans-johnson -at- uiowa.edu

BRAINSFit (cli, built-in)
BRAINSROIAuto (cli, built-in)

http://www.psychiatry.uiowa.edu

BRAINSFit (cli, built-in)
BRAINSROIAuto (cli, built-in)

Ivan Kolesov

Carrera Slice (loadable, bundled in Carrera Slice extension)
Carrera Slice Effect (scripted, bundled in Carrera Slice extension)
Fast Grow Cut Effect (scripted, bundled in Fast Grow Cut Effect extension)

Jan Egger

i Gyne (scripted, bundled in i Gyne extension)

Jayender Jagadeesan

Tracker Stabilizer (loadable, bundled in Tracker Stabilizer extension)

Jean-Baptiste Berger

Data Store (loadable, built-in)

Jean-Christophe Fillion-Robin

CLI4Test
Data Store (loadable, built-in)
Fast Grow Cut (loadable, bundled in Fast Grow Cut Effect extension)
Fast Grow Cut Segmenter (loadable, bundled in Carrera Slice extension)
fiber visibility crash2438
label Toggle Bug2049
Matlab Commander (cli, bundled in Matlab Bridge extension)
Matlab Module Generator (loadable, bundled in Matlab Bridge extension)
Multi Volume Explorer (loadable, built-in)
Multi Volume Importer (scripted, built-in)
Sample Data (scripted, built-in)
Simple Filters (scripted, built-in)
Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)
Transforms (loadable, built-in)
View Controllers (loadable, built-in)
Welcome (loadable, built-in)

Jim Miller

Charting (scripted, built-in)
Pk Modeling (cli, bundled in Pk Modeling extension)
Simple Region Growing Segmentation (cli, built-in)
Slice Link Logic (scripted, built-in)
Slicer4Minute (scripted, built-in)
View Controllers (loadable, built-in)
View Controllers Slice Interpolation Bug1926

Johan Andruejol

Units (loadable, built-in)

John Evans

Pk Modeling (cli, bundled in Pk Modeling extension)

Jonathan Bronson

Cleaver CLI (cli, bundled in Cleaver Extension extension)

Josh Cates

Label Map Smoothing (cli, built-in)
LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)

Joy Matsui

DWIConvert (cli, built-in)

Julien Finet

Cameras (loadable, built-in)
Colors (loadable, built-in)
Data (loadable, built-in)
Double Arrays (loadable, built-in)
Event Broker
Image Maker (cli, bundled in Image Maker extension)
Models (loadable, built-in)
Multi Volume Explorer (loadable, built-in)
Multi Volume Importer (scripted, built-in)
Scene Performance (scripted, built-in)
Threshold Scalar Volume (cli, built-in)
Tractography Display (loadable, built-in)
Transforms (loadable, built-in)
Units (loadable, built-in)
Volume Rendering (loadable, built-in)
Volumes (loadable, built-in)

Julien Jomier

Gaussian Blur Image Filter (cli, built-in)

Junichi Tokuda

Corner Annotation (scripted, bundled in Corner Annotation extension)
Curve Maker (scripted, bundled in Curve Maker extension)
Dilate Label (cli, bundled in Erode Dilate Label extension)
Erode Label (cli, bundled in Erode Dilate Label extension)
Percutaneous Approach Analysis (scripted, bundled in Percutaneous Approach Analysis extension)

Kent Williams

BRAINSDWICleanup (cli, built-in)
BRAINSTransform Convert (cli, built-in)
DWIConvert (cli, built-in)

Kevin Wang

Matlab Commander (cli, bundled in Matlab Bridge extension)
Matlab Module Generator (loadable, bundled in Matlab Bridge extension)
Sequence Browser (loadable, bundled in Multidim Data extension)
Sequences (loadable, bundled in Multidim Data extension)

Kilian Pohl

Annotations (loadable, built-in)
Change Tracker (scripted, bundled in Change Tracker extension)
EMSegment (loadable, built-in)
EMSegment Command Line (cli, built-in)
Scene Views (loadable, built-in)

Koichiro Murakami

Corner Annotation (scripted, bundled in Corner Annotation extension)
Percutaneous Approach Analysis (scripted, bundled in Percutaneous Approach Analysis extension)

Lauren Barber

i Gyne (scripted, bundled in i Gyne extension)
Needle Finder (scripted, bundled in Needle Finder extension)

Lauren O'Donnell

Fiber Bundle Label Select (cli, built-in)
Probe Volume With Model (cli, built-in)

Laurent Chauvin

Curve Maker (scripted, bundled in Curve Maker extension)
Dice Computation (loadable, bundled in Dice Computation extension)
Percutaneous Approach Analysis (scripted, bundled in Percutaneous Approach Analysis extension)
Tracker Stabilizer (loadable, bundled in Tracker Stabilizer extension)

Liang-Jia Zhu

Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)

Liangjia Zhu

Carrera Slice Effect (scripted, bundled in Carrera Slice extension)
Fast Grow Cut Effect (scripted, bundled in Fast Grow Cut Effect extension)
LAScar Segmenter (cli, bundled in LAScar Segmenter extension)

Luis G. Torres

Port Placement (scripted, bundled in Port Placement extension)

Luping Fang

Gyro Guide (scripted, bundled in Gyro Guide extension)

Marc Niethammer

DWIRician LMMSEFilter (cli, built-in)

Marcel Prastawa prastawa@sci.utah.edu

ABC (cli, bundled in ABC extension)

Mark Scully

DWIConvert (cli, built-in)

Markus Van Tol

Longitudinal PETCT (loadable, bundled in Longitudinal PETCT extension)
PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)

Martin Styner

Extract Skeleton (cli, built-in)

Mason Winsauer

Apply Matrix (cli, bundled in CMFreg extension)
Downsize (cli, bundled in CMFreg extension)
Growing (cli, bundled in CMFreg extension)
Label Addition (cli, bundled in CMFreg extension)
Label Extraction (cli, bundled in CMFreg extension)
Mask Creation (cli, bundled in CMFreg extension)
Non Growing (cli, bundled in CMFreg extension)

Matthew Holden

Metafile Importer (loadable, bundled in Multidim Data extension)
Python Metrics Calculator (scripted, bundled in Perk Tutor extension)
Sequence Browser (loadable, bundled in Multidim Data extension)
Sequences (loadable, bundled in Multidim Data extension)

Matthew S. Holden

Perk Evaluator (loadable, bundled in Perk Tutor extension)
Transform Recorder (loadable, bundled in Perk Tutor extension)
Workflow Segmentation (loadable, bundled in Perk Tutor extension)

Matthew Woehlke

Extension Wizard (scripted, built-in)

Michael Jeulin-Lagarrigue

Reformat (loadable, built-in)

Minjeong Kim

IGR3D MABMIS Testing (cli, bundled in MABMIS extension)
IGR3D MABMIS Training (cli, bundled in MABMIS extension)

Nabgha Fahrat

i Gyne (scripted, bundled in i Gyne extension)
Needle Finder (scripted, bundled in Needle Finder extension)

Neuro Image Resarch

Apply Matrix (cli, bundled in CMFreg extension)
Downsize (cli, bundled in CMFreg extension)
Growing (cli, bundled in CMFreg extension)
Label Addition (cli, bundled in CMFreg extension)
Label Extraction (cli, bundled in CMFreg extension)
Mask Creation (cli, bundled in CMFreg extension)
Non Growing (cli, bundled in CMFreg extension)

Nicholas Herlambang

JRC2013Vis

Nick Tustison

N4ITKBias Field Correction (cli, built-in)

Nicole Aucoin

ACPCTransform (cli, built-in)
Add Many Markups Fiducial Test
Annotations (loadable, built-in)
Cast Scalar Volume (cli, built-in)
Colors (loadable, built-in)
Data (loadable, built-in)
Fiducial Layout Switch Bug1914
Grayscale Model Maker (cli, built-in)
Markups (loadable, built-in)
Markups In Compare Viewers Self Test
Markups In Views Self Test
Mask Scalar Volume (cli, built-in)
Merge Models (cli, built-in)
Model Maker (cli, built-in)
Models (loadable, built-in)
Model To Label Map (cli, built-in)
Neurosurgical Planning Tutorial Markups Self Test
PETStandard Uptake Value Computation (cli, built-in)
PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
Scene Views (loadable, built-in)
SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
Threshold Scalar Volume (cli, built-in)
Volume Rendering Scene Close (scripted, built-in)
Volumes (loadable, built-in)

Nigel Goh

Thingiverse Browser (scripted, bundled in Thingiverse Browser extension)

Nikos Chrisochoides

Body Centric Cubic Mesh (cli, bundled in CBC 3D I2MConversion extension)
Mesh Compression (cli, bundled in CBC 3D I2MConversion extension)
PBNRR (cli, bundled in PBNRR extension)

Olivier Clatz

PBNRR (cli, bundled in PBNRR extension)

Pat Marion

Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)

Patricio Vela

Carrera Slice Effect (scripted, bundled in Carrera Slice extension)

Paul Mercea

Longitudinal PETCT (loadable, bundled in Longitudinal PETCT extension)

Pengdong Xiao

Intensity Segmenter (cli, bundled in Intensity Segmenter extension)

Peter Black

Change Tracker (scripted, bundled in Change Tracker extension)

Peter Karasev

Carrera Slice (loadable, bundled in Carrera Slice extension)
Carrera Slice Effect (scripted, bundled in Carrera Slice extension)

Peter Savadjiev

Finsler Backtracing (cli, bundled in Finsler Tractography extension)
Finsler Tractography (cli, bundled in Finsler Tractography extension)

Pierre Seroul

Extract Skeleton (cli, built-in)

Pietro Nardelli

Airway Segmentation CLI (cli, bundled in Airway Segmentation extension)

Polina Goll

EMSegment Command Line (cli, built-in)

Qing Pan

Gyro Guide (scripted, bundled in Gyro Guide extension)

Raul San Jose

Diffusion Tensor Scalar Measurements (cli, built-in)
DWITo DTIEstimation (cli, built-in)
Tractography Label Map Seeding (cli, built-in)

Rob MacLeod

LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)

Ron Kikinis

ACPCTransform (cli, built-in)
Cast Scalar Volume (cli, built-in)
Change Tracker (scripted, bundled in Change Tracker extension)
Crop Volume (loadable, built-in)
Fast Grow Cut Effect (scripted, bundled in Fast Grow Cut Effect extension)
Mask Scalar Volume (cli, built-in)
Merge Models (cli, built-in)
Model Maker (cli, built-in)
Multi Volume Explorer (loadable, built-in)
Multi Volume Importer (scripted, built-in)
N4ITKBias Field Correction (cli, built-in)
PETStandard Uptake Value Computation (cli, built-in)
PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
Robust Statistics Segmenter (cli, built-in)
SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
Threshold Scalar Volume (cli, built-in)
View Controllers (loadable, built-in)
Volume Rendering (loadable, built-in)

Ross Whitaker

Label Map Smoothing (cli, built-in)

Ruifeng Chen

Gyro Guide (scripted, bundled in Gyro Guide extension)

S

i Gyne (scripted, bundled in i Gyne extension)
Needle Finder (scripted, bundled in Needle Finder extension)

Sam Song

i Gyne (scripted, bundled in i Gyne extension)

Santiago Aja Fern

DWIJoint Rician LMMSEFilter (cli, built-in)
DWIRician LMMSEFilter (cli, built-in)
DWIUnbiased Non Local Means Filter (cli, built-in)

Sebastien Barré

Cameras (loadable, built-in)

Sebastien Barre

EMSegment Command Line (cli, built-in)

Shigeyuki Naka

Corner Annotation (scripted, bundled in Corner Annotation extension)

Soichiro Tani

Corner Annotation (scripted, bundled in Corner Annotation extension)

Sonia Pujol

Dice Computation (loadable, bundled in Dice Computation extension)
DTIexport (cli, built-in)
DTIimport (cli, built-in)

Stephen Aylward

Extract Skeleton (cli, built-in)
Gaussian Blur Image Filter (cli, built-in)

Stephen R Aylward

Expert Automated Registration (cli, built-in)

Steve Pieper

Atlas Tests
Binary Watershed Effect (scripted, bundled in IASEM extension)
Carrera Slice Effect (scripted, bundled in Carrera Slice extension)
Compare Volumes (scripted, bundled in CMFreg extension)
Data Probe (scripted, built-in)
DICOMDiffusion Volume Plugin
DICOMLongitudinal PETCTPlugin
DICOMScalar Volume Plugin
DICOMSlicer Data Bundle Plugin
Editor (scripted, built-in)
Endoscopy (scripted, built-in)
fiber visibility crash2438
Fiber Bundle To Label Map (scripted, built-in)
Label Statistics (scripted, built-in)
label Toggle Bug2049
Landmark Registration (scripted, bundled in CMFreg extension)
Multi Volume Explorer (loadable, built-in)
Multi Volume Importer (scripted, built-in)
Performance Tests
RSNA2012Prostate Demo
RSNAQuant Tutorial
RSNAVis Tutorial
Sample Data (scripted, built-in)
scene Import2428
Self Tests
Simple Filters (scripted, built-in)
slicer Close Crash Bug2590
Slicer MRBTest
Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)
Threshold Threading Test
View Controllers (loadable, built-in)
Volumes (loadable, built-in)
Xnat Slicer (scripted, bundled in XNATSlicer extension)

Sunil Kumar

Xnat Slicer (scripted, bundled in XNATSlicer extension)

Sylvain Bouix

Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)

Tamas Ungi

Perk Evaluator (loadable, bundled in Perk Tutor extension)
Python Metrics Calculator (scripted, bundled in Perk Tutor extension)
Scoliosis Monitoring (scripted, bundled in Scoliosis extension)
Spinal Curvature Measurement (scripted, bundled in Scoliosis extension)
Transform Recorder (loadable, bundled in Perk Tutor extension)
Workflow Segmentation (loadable, bundled in Perk Tutor extension)

the University of North Carolina at Chapel Hill

Intensity Segmenter (cli, bundled in Intensity Segmenter extension)

Tina Kapur

i Gyne (scripted, bundled in i Gyne extension)
Needle Finder (scripted, bundled in Needle Finder extension)

Tobias Penzkofer

i Gyne (scripted, bundled in i Gyne extension)

Tohru Tani

Corner Annotation (scripted, bundled in Corner Annotation extension)

UNC Medical School

Apply Matrix (cli, bundled in CMFreg extension)
Downsize (cli, bundled in CMFreg extension)
Growing (cli, bundled in CMFreg extension)
Label Addition (cli, bundled in CMFreg extension)
Label Extraction (cli, bundled in CMFreg extension)
Mask Creation (cli, bundled in CMFreg extension)
Non Growing (cli, bundled in CMFreg extension)

UofM School of Dentistry

Apply Matrix (cli, bundled in CMFreg extension)
Downsize (cli, bundled in CMFreg extension)
Label Addition (cli, bundled in CMFreg extension)
Label Extraction (cli, bundled in CMFreg extension)
Mask Creation (cli, bundled in CMFreg extension)
Non Growing (cli, bundled in CMFreg extension)

UofM School Of Dentistry

Growing (cli, bundled in CMFreg extension)

Vince Magnotta

DWIConvert (cli, built-in)

Vincent A. Magnotta

BRAINSLabel Stats (cli, built-in)

Vincent Magnotta

BRAINSResample (cli, built-in)

Vinicius Boen

Apply Matrix (cli, bundled in CMFreg extension)
Downsize (cli, bundled in CMFreg extension)
Growing (cli, bundled in CMFreg extension)
Label Addition (cli, bundled in CMFreg extension)
Label Extraction (cli, bundled in CMFreg extension)
Mask Creation (cli, bundled in CMFreg extension)
Non Growing (cli, bundled in CMFreg extension)
Surface Registration (scripted, bundled in CMFreg extension)

Wendy Plesniak

Annotations (loadable, built-in)
PETStandard Uptake Value Computation (cli, built-in)
PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
Scene Views (loadable, built-in)
SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
View Controllers (loadable, built-in)
Welcome (loadable, built-in)

Xiaodong Tao

DWIConvert (cli, built-in)
Model To Label Map (cli, built-in)

Xiaofeng Liu

IGR3D MABMIS Testing (cli, bundled in MABMIS extension)
IGR3D MABMIS Training (cli, bundled in MABMIS extension)

Xiaojun Chen

i Gyne (scripted, bundled in i Gyne extension)

y Wells

i Gyne (scripted, bundled in i Gyne extension)
Needle Finder (scripted, bundled in Needle Finder extension)

Yanling Liu

Volume Rendering (loadable, built-in)

Yi Gao

Carrera Slice Effect (scripted, bundled in Carrera Slice extension)
Fast Grow Cut Effect (scripted, bundled in Fast Grow Cut Effect extension)
i Gyne (scripted, bundled in i Gyne extension)
LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
Needle Finder (scripted, bundled in Needle Finder extension)
Robust Statistics Segmenter (cli, built-in)
Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)

Yinglin Lee

Test Grid Transform Registration (cli, built-in)

Yingxuan Zhu

Pk Modeling (cli, bundled in Pk Modeling extension)

Yixun Liu

Body Centric Cubic Mesh (cli, bundled in CBC 3D I2MConversion extension)
Mesh Compression (cli, bundled in CBC 3D I2MConversion extension)
PBNRR (cli, bundled in PBNRR extension)

Yong Zhang

Annotations (loadable, built-in)

Yumin Yuan

EMSegment Command Line (cli, built-in)

Modules by type

3 types:

cli
loadable
scripted

cli

ABC (cli, bundled in ABC extension)
ACPCTransform (cli, built-in)
Add Scalar Volumes (cli, built-in)
Airway Segmentation CLI (cli, bundled in Airway Segmentation extension)
Apply Matrix (cli, bundled in CMFreg extension)
Bin Shrink (cli, bundled in IASEM extension)
Body Centric Cubic Mesh (cli, bundled in CBC 3D I2MConversion extension)
BRAINSDemon Warp (cli, built-in)
BRAINSDWICleanup (cli, built-in)
BRAINSFit (cli, built-in)
BRAINSLabel Stats (cli, built-in)
BRAINSResample (cli, built-in)
BRAINSResize (cli, built-in)
BRAINSROIAuto (cli, built-in)
BRAINSTransform Convert (cli, built-in)
BSpline To Deformation Field (cli, built-in)
Cast Scalar Volume (cli, built-in)
Checker Board Filter (cli, built-in)
Cleaver CLI (cli, bundled in Cleaver Extension extension)
CLIROITest (cli, built-in)
Create DICOMSeries (cli, built-in)
Curvature Anisotropic Diffusion (cli, built-in)
Diffusion Tensor Scalar Measurements (cli, built-in)
Diffusion Tensor Test (cli, built-in)
Diffusion Weighted Volume Masking (cli, built-in)
Dilate Label (cli, bundled in Erode Dilate Label extension)
Downsize (cli, bundled in CMFreg extension)
DTIexport (cli, built-in)
DTIimport (cli, built-in)
DWIConvert (cli, built-in)
DWIJoint Rician LMMSEFilter (cli, built-in)
DWIRician LMMSEFilter (cli, built-in)
DWITo DTIEstimation (cli, built-in)
DWIUnbiased Non Local Means Filter (cli, built-in)
EMSegment Command Line (cli, built-in)
EMSegment Transform To New Format (cli, built-in)
Erode Label (cli, bundled in Erode Dilate Label extension)
Execution Model Tour (cli, built-in)
Expert Automated Registration (cli, built-in)
Extract Skeleton (cli, built-in)
Fiber Bundle Label Select (cli, built-in)
Fiber Tract Measurements (cli, built-in)
Fiducial Registration (cli, built-in)
Finsler Backtracing (cli, bundled in Finsler Tractography extension)
Finsler Tractography (cli, bundled in Finsler Tractography extension)
Gaussian Blur Image Filter (cli, built-in)
Gradient Anisotropic Diffusion (cli, built-in)
Grayscale Fill Hole Image Filter (cli, built-in)
Grayscale Grind Peak Image Filter (cli, built-in)
Grayscale Model Maker (cli, built-in)
Growing (cli, bundled in CMFreg extension)
Histogram Matching (cli, built-in)
IASEMImport (cli, bundled in IASEM extension)
IASEMImport Series (cli, bundled in IASEM extension)
IGR3D MABMIS Testing (cli, bundled in MABMIS extension)
IGR3D MABMIS Training (cli, bundled in MABMIS extension)
Image Label Combine (cli, built-in)
Image Maker (cli, bundled in Image Maker extension)
Intensity Difference Metric (cli, bundled in Change Tracker extension)
Intensity Segmenter (cli, bundled in Intensity Segmenter extension)
Label Addition (cli, bundled in CMFreg extension)
Label Extraction (cli, bundled in CMFreg extension)
Label Map Smoothing (cli, built-in)
LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
Mask Creation (cli, bundled in CMFreg extension)
Mask Scalar Volume (cli, built-in)
Matlab Commander (cli, bundled in Matlab Bridge extension)
Median Image Filter (cli, built-in)
Merge Models (cli, built-in)
Mesh Compression (cli, bundled in CBC 3D I2MConversion extension)
Model Maker (cli, built-in)
Model To Label Map (cli, built-in)
Multiply Scalar Volumes (cli, built-in)
N4ITKBias Field Correction (cli, built-in)
Non Growing (cli, bundled in CMFreg extension)
Orient Scalar Volume (cli, built-in)
Otsu Threshold Image Filter (cli, built-in)
PBNRR (cli, bundled in PBNRR extension)
Perform Metric Test (cli, built-in)
PETStandard Uptake Value Computation (cli, built-in)
PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
Pk Modeling (cli, bundled in Pk Modeling extension)
Probe Volume With Model (cli, built-in)
Resample DTIVolume (cli, built-in)
Resample Scalar Vector DWIVolume (cli, built-in)
Resample Scalar Volume (cli, built-in)
Robust Statistics Segmenter (cli, built-in)
Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)
Simple Region Growing Segmentation (cli, built-in)
Sobolev Segmenter (cli, bundled in Sobolev Segmenter extension)
Spacing Aware Curvature Diffusion (cli, bundled in IASEM extension)
Subtract Scalar Volumes (cli, built-in)
SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
Swiss Skull Stripper (cli, bundled in Swiss Skull Stripper extension)
Test Grid Transform Registration (cli, built-in)
Threshold Scalar Volume (cli, built-in)
Tractography Label Map Seeding (cli, built-in)
VBRAINSDemon Warp (cli, built-in)
Voting Binary Hole Filling Image Filter (cli, built-in)

loadable

Annotations (loadable, built-in)
Cameras (loadable, built-in)
Carrera Slice (loadable, bundled in Carrera Slice extension)
Colors (loadable, built-in)
Crop Volume (loadable, built-in)
Data (loadable, built-in)
Data Store (loadable, built-in)
Dice Computation (loadable, bundled in Dice Computation extension)
Double Arrays (loadable, built-in)
EMSegment (loadable, built-in)
EMSegment Quick (loadable, built-in)
Fast Grow Cut (loadable, bundled in Fast Grow Cut Effect extension)
Fast Grow Cut Segmenter (loadable, bundled in Carrera Slice extension)
Gel Dosimetry Analysis Algo (loadable, bundled in Gel Dosimetry Analysis extension)
Longitudinal PETCT (loadable, bundled in Longitudinal PETCT extension)
Markups (loadable, built-in)
Matlab Module Generator (loadable, bundled in Matlab Bridge extension)
Metafile Importer (loadable, bundled in Multidim Data extension)
Models (loadable, built-in)
Multi Volume Explorer (loadable, built-in)
Open IGTLink IF (loadable, built-in)
Perk Evaluator (loadable, bundled in Perk Tutor extension)
Reformat (loadable, built-in)
Scene Views (loadable, built-in)
Sequence Browser (loadable, bundled in Multidim Data extension)
Sequences (loadable, bundled in Multidim Data extension)
Subject Hierarchy (loadable, built-in)
Tracker Stabilizer (loadable, bundled in Tracker Stabilizer extension)
Tractography Display (loadable, built-in)
Tractography Interactive Seeding (loadable, built-in)
Transform Recorder (loadable, bundled in Perk Tutor extension)
Transforms (loadable, built-in)
Units (loadable, built-in)
View Controllers (loadable, built-in)
Volume Rendering (loadable, built-in)
Volumes (loadable, built-in)
Welcome (loadable, built-in)
Workflow Segmentation (loadable, bundled in Perk Tutor extension)

scripted

Binary Watershed Effect (scripted, bundled in IASEM extension)
Carrera Slice Effect (scripted, bundled in Carrera Slice extension)
Change Tracker (scripted, bundled in Change Tracker extension)
Charting (scripted, built-in)
Compare Volumes (scripted, bundled in CMFreg extension)
Corner Annotation (scripted, bundled in Corner Annotation extension)
Curve Maker (scripted, bundled in Curve Maker extension)
Data Probe (scripted, built-in)
DICOM2Full Brain Tractography (scripted, built-in)
Double Threshold Effect (scripted, bundled in IASEM extension)
Editor (scripted, built-in)
Endoscopy (scripted, built-in)
Extension Wizard (scripted, built-in)
Fast Grow Cut Effect (scripted, bundled in Fast Grow Cut Effect extension)
Fiber Bundle To Label Map (scripted, built-in)
Gyro Guide (scripted, bundled in Gyro Guide extension)
i Gyne (scripted, bundled in i Gyne extension)
KUtil (scripted, bundled in Carrera Slice extension)
Label Object Statistics (scripted, bundled in IASEM extension)
Label Statistics (scripted, built-in)
Landmark Registration (scripted, bundled in CMFreg extension)
Multi Volume Importer (scripted, built-in)
Needle Finder (scripted, bundled in Needle Finder extension)
Percutaneous Approach Analysis (scripted, bundled in Percutaneous Approach Analysis extension)
Port Placement (scripted, bundled in Port Placement extension)
Py Dev Remote Debug (scripted, bundled in Py Dev Remote Debug extension)
Python Metrics Calculator (scripted, bundled in Perk Tutor extension)
Sample Data (scripted, built-in)
Scene Performance (scripted, built-in)
Scoliosis Monitoring (scripted, bundled in Scoliosis extension)
Simple Filters (scripted, built-in)
Slice Link Logic (scripted, built-in)
Slicer4Minute (scripted, built-in)
Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)
Spinal Curvature Measurement (scripted, bundled in Scoliosis extension)
Surface Registration (scripted, bundled in CMFreg extension)
TCIABrowser (scripted, bundled in TCIABrowser extension)
Thingiverse Browser (scripted, bundled in Thingiverse Browser extension)
Volume Rendering Scene Close (scripted, built-in)
Window Level Effect (scripted, bundled in Window Level Effect extension)
Xnat Slicer (scripted, bundled in XNATSlicer extension)