Documentation/4.3/Modules/Growing

For the latest Slicer documentation, visit the read-the-docs.

Growing

Growing

User Interface

Baseline CBCT Scan - Input Scan

Follow up CBCT Scan - Input Scan

Baseline Segmentation Mask - Input Seg

Followup Segmentation Mask - Input Seg

Baseline and Followup CBCT Scans - Baseline Input Scan + Followup Input Scan

Baseline and Followup CBCT Scans Registered - Baseline Input Scan + Output Scan

General Information

Module Type & Category

Type: CLI

Category: CBCT Scan Registration

Authors, Collaborators & Contact

Author: Vinicius Boen

Contributors: Francois Budin (NIRAL, University of North Carolina), Martin Styner (NIRAL, University Of North Carolina), Beatriz Paniagua (NIRAL, University Of North Carolina), Lucia Cevidanes (University of Michigan - School of Dentistry)

Contact: vboen@umich.edu

Module Description

• Input Parameters:
  • Baseline Scan (fixed) [-f --fixedVolume] : The fixed scan image for registration.
  • Follow up Scan (moving) [-m --movingVolume] : The moving scan image for registration.
  • Baseline Segmentation (fixed) [--fixedBinaryVolume] : The fixed one label segmentation image for registration used to specify the region of interest.
  • Follow up Segmentation (moving) [--movingBinaryVolume] : The moving one label segmentation image for registration used to specify the region of interest.

• Voxel Based Registration Options:
  • Include ScaleVersor3D registration phase [--useScaleVersor3D] : Perform a ScaleVersor3D registration as part of the sequential registration steps.
  • Include ScaleSkewVersor3D registration phase [--useScaleSkewVersor3D] : Perform a ScaleSkewVersor3D registration as part of the sequential registration steps.
  • Include Affine registration phase [--useAffine] : Perform an Affine registration as part of the sequential registration steps.

• Output Registration Matrix:
  • Registration Matrix [-t --transformPath] : File name for the rigid component of the estimated registration matrix. Can be used to rigidly register the moving image to the fixed image.

• Apply Registration Matrix:
  • Input Segmentatiton to be Registered [--segmentation] : Input segmentation image to be modified with the registration matrix.
  • Output Registered Scan [--segmentationOut] : Output segmentation image. This segmentaiton image is the 'Input Segmentation to be Registered' with the registration matrix already applied.
  • Output Registered Scan [--outputVolume] : Output image for registration. This image is the Follow up Scan with the registration matrix already applied.

||

User Interface