Documentation/4.2/Extensions/TubeTK

Introduction and Acknowledgements

Author: Stephen Aylward
Contributors: Jean-Christophe Fillion-Robin (Kitware), Christopher Mullins (Kitware), Michael Jeulin-L (Kitware), Matthew McCormick (Kitware)
Contact: Christopher Mullins, <email>christopher.mullins@kitware.com</email>
Website: http://www.tubetk.org/
License: TubeTK License

Extension Description

TubeTK is an open-source toolkit for the segmentation, registration, and analysis of tubes and surfaces in images.

Tubes and surfaces, as generalized 1D and 2D manifolds in N-dimensional images, are essential components in a variety of image analysis tasks. Instances of tubular structures in images include blood vessels in magnetic resonance angiograms and b-mode ultrasound images, wires in microscopy images of integrated circuits, roads in areal photographs, and nerves in confocal microscopy.

Modules

• TubeTK Anisotropic Diffusive Deformable Registration
• TubeTK Coherence-Enhancing Anisotropic Diffusion
• TubeTK Compute Binary Image Similary
• TubeTK Compute Image Similarity
• TubeTK Connected Components
• TubeTK Compute Contrast Image Using Prior
• TubeTK Crop
• TubeTK Deblend Images Using Prior
• TubeTK Edge Enhancing Anisotropic Diffusion
• TubeTK Extract Curves 2D
• TubeTK Ridge Extractor
• TubeTK Extract Vessel Seeds
• TubeTK Hessian Tubeness 2D
• TubeTK Hybrid-Enhancing Anisotropic Diffusion
• TubeTK LDA Generator
• TubeTK Mask To Stats
• TubeTK Match Image With Prior
• TubeTK Merge
• TubeTK NJet Linear Discriminant Analysis
• TubeTK Otsu Threshold Application
• TubeTK PDF Region Growing
• TubeTK Resample Images
• TubeTK Sample CLI Application
• TubeTK Skeletonize