Documentation/Nightly

Nightly 4.10 4.8 4.6 4.5 4.4 4.3 4.2 4.1 4.0 3.6 3.5 3.4 3.2 ALL VERSIONS

Where to start ? Training pages Information on how to use Slicer Nightly FAQ Set of common questions/answers Users mailing list / Sign-up / Browse archives How to Report a problem  NEW Slicer Application Installation / Uninstallation Main Application User-Interface Application Settings Extensions Manager Mouse Buttons, "Hot-keys" and Keyboard Shortcuts Recommended Computer Configurations Loading or saving data and listing of supported data formats Slicer Lookup Tables Setting up and using stereoscopic viewing QtTesting - Easy way to record and play macros		Module Categories Core Modules Wizards Informatics Registration Segmentation Quantification Diffusion IGT Filtering Surface Models Converters Endoscopy Work in Progress Developer Tools Legacy Extension Categories What are these categories ? See here Category 1  NEW Category 2  NEW Category 3  NEW		Developers Corner Information for Software Developers  UPDATED Source code, contribute patch, develop modules Developers mailing list / Browse archives Intended for discussion of programming related questions Miscellaneous Documentation guidelines Slicer user documentation principle and guidelines Visual blog Set of screenshots showing Slicer in action. Release Notes Platform specific issues and considerations Announcements & Acknowledgments Slicer Registration Case Library  NEW Real-life example cases of using the Slicer registration tools, incl. datasets and step-by-step instructions to follow and try yourself.

Modules by category

46 categories:

• Astronomy
• Cardiac
• Cardiac MRI Toolkit
• Chest Imaging Platform
  • Toolkit
    • Particles
    • Processing
    • Quantification
    • Registration
    • Segmentation
    • Utils
• CIP
• Converters
• Developer Tools
  • DICOM Plugins
  • Editor Extensions
  • Matlab
  • Segment Editor Extensions
  • Utils
• Diffusion
  • Diffusion Data Conversion
  • Diffusion Tensor Images
  • Diffusion Weighted Images
  • Import and Export
  • Process
  • Quantify
  • Tractography
    • Region-based
  • Utilities
• Editor Effects
• EditorEffect
• Endoscopy
• Examples
• Exporter
• Filter
• Filtering
  • Arithmetic
  • Denoising
  • Morphology
• IGT
• Informatics
  • Converters
• Legacy
  • Converters
  • Filtering
  • Registration
  • Work in Progress
    • Diffusion Tensor
      • Test
• Libraries
• Machine Learning
• Margin Calculator
• Mesh Generation
• MeshGeneration
• Microscopy
• MultiVolume Support
• Pathology
• Perk Tutor
• Plastimatch
  • Registration
  • Utilities
• Quantification
  • ChangeQuantification
• Radiology
• Radiotherapy
• Registration
  • CMF Registration
    • Voxelbase Registration
  • Label Registration
  • Specialized
• Segmentation
  • Specialized
• Sequences
• Slicelets
• SlicerProstate
• Surface Models
• TestCases
• Testing
  • IGT Tests
  • SlicerRT Tests
  • TestCases
• Ultrasound
• Uncategorized
• Utilities
  • BRAINS
• Vascular Modeling Toolkit
• Virtual Reality
• Web System Tools
• Wizards
• XNATSlicer

Astronomy

• AstroVolume (loadable, bundled in SlicerAstro extension)
• AstroReproject (loadable, bundled in SlicerAstro extension)
• AstroStatistics (loadable, bundled in SlicerAstro extension)
• AstroMasking (loadable, bundled in SlicerAstro extension)
• AstroSmoothing (loadable, bundled in SlicerAstro extension)
• AstroSampleData (scripted, bundled in SlicerAstro extension)
• AstroProfiles (loadable, bundled in SlicerAstro extension)
• AstroMomentMaps (loadable, bundled in SlicerAstro extension)
• AstroPVSlice (loadable, bundled in SlicerAstro extension)
• AstroPVDiagram (loadable, bundled in SlicerAstro extension)
• AstroModeling (loadable, bundled in SlicerAstro extension)
• AstroWelcome (loadable, bundled in SlicerAstro extension)
• SlicerAstroDataProbe (scripted, bundled in SlicerAstro extension)

Cardiac

• Philips4dUsDicomPatcher (scripted, bundled in SlicerHeart extension)
• ValveView (scripted, bundled in SlicerHeart extension)

Cardiac MRI Toolkit

• CMRToolkitPVAntrumCut (cli, bundled in Cardiac_MRI_Toolkit extension)
• CMRToolkitBooleanREMOVEFilter (cli, bundled in Cardiac_MRI_Toolkit extension)
• LASegmentationWorkflow (scripted, bundled in Cardiac_MRI_Toolkit extension)
• CMRToolkitRegistrationBRAINSFit (scripted, bundled in Cardiac_MRI_Toolkit extension)
• CMRToolkitAutomaticLeftAtrialScar (cli, bundled in Cardiac_MRI_Toolkit extension)
• CMRToolkitConnectedThresholdFilter (cli, bundled in Cardiac_MRI_Toolkit extension)
• CMRToolkitWizard (scripted, bundled in Cardiac_MRI_Toolkit extension)
• CMRToolkitIsolatedConnectedFilter (cli, bundled in Cardiac_MRI_Toolkit extension)
• CMRToolkitInhomogeneityCorrection (cli, bundled in Cardiac_MRI_Toolkit extension)
• CMRToolkitAxialDilate (cli, bundled in Cardiac_MRI_Toolkit extension)
• ScarVisualization (scripted, bundled in Cardiac_MRI_Toolkit extension)
• CMRToolkitRegistration (scripted, bundled in Cardiac_MRI_Toolkit extension)
• CMRToolkitLASegmentationGraphCuts (cli, bundled in Cardiac_MRI_Toolkit extension)

Chest Imaging Platform

• CIP_MIPViewer (scripted, bundled in Chest_Imaging_Platform extension)
• CIP_BodyComposition (scripted, bundled in Chest_Imaging_Platform extension)
• CIP_InteractiveLobeSegmentation (scripted, bundled in Chest_Imaging_Platform extension)
• CIP_TracheaStentPlanning (scripted, bundled in Chest_Imaging_Platform extension)
• CIP_LesionModel (scripted, bundled in Chest_Imaging_Platform extension)
• AirwayInspector (loadable, bundled in Chest_Imaging_Platform extension)
• CIP_PAARatio (scripted, bundled in Chest_Imaging_Platform extension)
• CIP_CalciumScoring (scripted, bundled in Chest_Imaging_Platform extension)
• CIP_ParenchymaAnalysis (scripted, bundled in Chest_Imaging_Platform extension)
• CIP_ParenchymaSubtypeTraining (scripted, bundled in Chest_Imaging_Platform extension)
• CIP_PointsLabelling (scripted, bundled in Chest_Imaging_Platform extension)

Toolkit

Particles

• ExtractParticlesFromChestRegionChestType (cli, bundled in Chest_Imaging_Platform extension)
• FilterVesselParticleData (cli, bundled in Chest_Imaging_Platform extension)
• RemoveParticlesFromParticlesDataSet (cli, bundled in Chest_Imaging_Platform extension)
• PerturbParticles (cli, bundled in Chest_Imaging_Platform extension)
• MergeParticleDataSets (cli, bundled in Chest_Imaging_Platform extension)
• FilterAirwayParticleData (cli, bundled in Chest_Imaging_Platform extension)
• FitLobeSurfaceModelsToParticleData (cli, bundled in Chest_Imaging_Platform extension)
• ClassifyFissureParticles (cli, bundled in Chest_Imaging_Platform extension)
• GenerateStenciledLabelMapFromParticles (cli, bundled in Chest_Imaging_Platform extension)
• FilterFissureParticleData (cli, bundled in Chest_Imaging_Platform extension)

Processing

• ResampleLabelMap (cli, bundled in Chest_Imaging_Platform extension)
• RescaleLabelMap (cli, bundled in Chest_Imaging_Platform extension)
• GenerateMedianFilteredImage (cli, bundled in Chest_Imaging_Platform extension)
• LabelMapFromRegionAndTypePoints (cli, bundled in Chest_Imaging_Platform extension)
• CropLung (cli, bundled in Chest_Imaging_Platform extension)
• GenerateNLMFilteredImage (cli, bundled in Chest_Imaging_Platform extension)
• RemoveChestTypeFromLabelMapUsingParticles (cli, bundled in Chest_Imaging_Platform extension)
• GenerateAtlasConvexHull (cli, bundled in Chest_Imaging_Platform extension)
• RemapLabelMap (cli, bundled in Chest_Imaging_Platform extension)
• ComputeFissureFeatureVectors (cli, bundled in Chest_Imaging_Platform extension)
• GenerateLobeSurfaceModels (cli, bundled in Chest_Imaging_Platform extension)
• FilterConnectedComponents (cli, bundled in Chest_Imaging_Platform extension)
• ExtractChestLabelMap (cli, bundled in Chest_Imaging_Platform extension)
• PerformMorphological (cli, bundled in Chest_Imaging_Platform extension)
• ExtractFissureBoundaryFromLobeMap (cli, bundled in Chest_Imaging_Platform extension)
• EnhanceFissuresInImage (cli, bundled in Chest_Imaging_Platform extension)
• GraphCutsOptimization (cli, bundled in Chest_Imaging_Platform extension)
• GenerateDistanceMapFromLabelMap (cli, bundled in Chest_Imaging_Platform extension)
• ResampleCT (cli, bundled in Chest_Imaging_Platform extension)
• ComputeFeatureStrength (cli, bundled in Chest_Imaging_Platform extension)
• ComputeDistanceMap (cli, bundled in Chest_Imaging_Platform extension)
• QualityControl (cli, bundled in Chest_Imaging_Platform extension)
• GenerateImageSubVolumes (cli, bundled in Chest_Imaging_Platform extension)

Quantification

• EvaluateLungLobeSegmentationResults (cli, bundled in Chest_Imaging_Platform extension)
• GetTransformationKappa (cli, bundled in Chest_Imaging_Platform extension)
• ReadWriteImageData (cli, bundled in Chest_Imaging_Platform extension)
• ComputeIntensityStatistics (cli, bundled in Chest_Imaging_Platform extension)
• ComputeCrossSectionalArea (cli, bundled in Chest_Imaging_Platform extension)
• GenerateParenchymaPhenotypes (cli, bundled in Chest_Imaging_Platform extension)
• LabelParticlesByChestRegionChestType (cli, bundled in Chest_Imaging_Platform extension)
• GetTransformationSimilarityMetric (cli, bundled in Chest_Imaging_Platform extension)
• GetTransformationKappa2D (cli, bundled in Chest_Imaging_Platform extension)

Registration

• Introduction to Registration (by Dominik Meier)
• RegisterLungAtlas (cli, bundled in Chest_Imaging_Platform extension)
• RegisterLabelMaps (cli, bundled in Chest_Imaging_Platform extension)
• RegisterCT (cli, bundled in Chest_Imaging_Platform extension)

Segmentation

• GenerateOtsuLungCast (cli, bundled in Chest_Imaging_Platform extension)
• SegmentLungAirways (cli, bundled in Chest_Imaging_Platform extension)
• SegmentLungLobes (cli, bundled in Chest_Imaging_Platform extension)
• GeneratePartialLungLabelMap (cli, bundled in Chest_Imaging_Platform extension)
• GenerateSimpleLungMask (cli, bundled in Chest_Imaging_Platform extension)
• SplitLeftLungRightLung (cli, bundled in Chest_Imaging_Platform extension)
• GenerateBinaryThinning3D (cli, bundled in Chest_Imaging_Platform extension)
• GenerateLesionSegmentation (cli, bundled in Chest_Imaging_Platform extension)

Utils

• ConvertDicom (cli, bundled in Chest_Imaging_Platform extension)
• RegionTypeLocationsToROIVolume (cli, bundled in Chest_Imaging_Platform extension)
• ReadVTKWriteNRRDs (cli, bundled in Chest_Imaging_Platform extension)
• GenerateModel (cli, bundled in Chest_Imaging_Platform extension)
• GenerateOverlayImages (cli, bundled in Chest_Imaging_Platform extension)
• ExecuteSystemCommand (cli, bundled in Chest_Imaging_Platform extension)
• GetStructuresInLabelMap (cli, bundled in Chest_Imaging_Platform extension)
• FindPatchMatch (cli, bundled in Chest_Imaging_Platform extension)
• ConvertChestRegionChestTypeToLabelMapValue (cli, bundled in Chest_Imaging_Platform extension)
• MaskOutLabelMapStructures (cli, bundled in Chest_Imaging_Platform extension)
• ReadNRRDsWriteVTK (cli, bundled in Chest_Imaging_Platform extension)
• ConvertLabelMapValueToChestRegionChestType (cli, bundled in Chest_Imaging_Platform extension)
• ReadWriteRegionAndTypePoints (cli, bundled in Chest_Imaging_Platform extension)
• MergeChestLabelMaps (cli, bundled in Chest_Imaging_Platform extension)
• ReadVidaWriteCIP (cli, bundled in Chest_Imaging_Platform extension)
• ReadDicomWriteTags (cli, bundled in Chest_Imaging_Platform extension)
• TransferRegionAndTypeIndicesToFromPoints (cli, bundled in Chest_Imaging_Platform extension)

CIP

• CIP_ (scripted, bundled in Chest_Imaging_Platform extension)
• CIP_Common (scripted, bundled in Chest_Imaging_Platform extension)

Converters

• QuadEdgeSurfaceMesher (cli, bundled in SlicerProstate extension)
• CropVolume (loadable, built-in)
• OrientScalarVolume (cli, built-in)
• ConvertVTK (cli, bundled in UKFTractography extension)
• VectorToScalarVolume (scripted, built-in)
• CreateDICOMSeries (cli, built-in)
• ParticlesDisplay (loadable, bundled in Chest_Imaging_Platform extension)
• RegionType (loadable, bundled in Chest_Imaging_Platform extension)

Developer Tools

• Cameras (loadable, built-in)
• ExecutionModelTour (cli, built-in)
• NodeModifiedStatistics (scripted, bundled in DebuggingTools extension)
• PyDevRemoteDebug (scripted, bundled in DebuggingTools extension)
• ExtensionWizard (scripted, built-in)
• NodeInfo (scripted, bundled in DebuggingTools extension)
• ImageMaker (cli, bundled in ImageMaker extension)
• ExtensionStats (scripted, bundled in DeveloperToolsForExtensions extension)
• DeveloperToolsForExtensions (scripted, bundled in DeveloperToolsForExtensions extension)
• EventBroker
• DoubleArrays (loadable, built-in)

DICOM Plugins

• DICOMParametricMapPlugin
• DicomUltrasoundPlugin
• DICOMSegmentationPlugin
• DICOMSlicerDataBundlePlugin
• DICOMTID1500Plugin
• DICOMPETSUVPlugin
• DICOMScalarVolumePlugin
• DICOMDiffusionVolumePlugin
• DICOMLongitudinalPETCTPlugin
• DicomSroImportPlugin
• DICOMRWVMPlugin
• DicomRtImportExportPlugin
• MultiVolumeImporterPlugin

Editor Extensions

• FastGrowCutEffect (scripted, bundled in FastGrowCutEffect extension)
• CarreraSliceEffect (scripted, bundled in CarreraSlice extension)
• QuickTCGAEffect (scripted, bundled in SlicerPathology extension)
• PETTumorSegmentationEffect (scripted, bundled in PETTumorSegmentation extension)
• BinaryWatershedEffect (scripted, bundled in IASEM extension)
• DoubleThresholdEffect (scripted, bundled in IASEM extension)
• ShortCutEffect (scripted, bundled in SlicerPathology extension)

Matlab

• MatlabModuleGenerator (loadable, bundled in MatlabBridge extension)
• MatlabCommander (cli, bundled in MatlabBridge extension)

Segment Editor Extensions

• SegmentEditorPETTumor (scripted, bundled in PETTumorSegmentation extension)

Utils

• SlicerProstate (scripted, bundled in SlicerProstate extension)

Diffusion

• DMRIInstall (scripted, built-in)

Diffusion Data Conversion

• DWIConvert (cli, built-in)

Diffusion Tensor Images

• ResampleDTIlogEuclidean (cli, bundled in ResampleDTIlogEuclidean extension)

Diffusion Weighted Images

• BRAINSDWICleanup (cli, built-in)

Import and Export

• DWIConvert (cli, built-in)
• DICOMTract_to_VTK (cli, bundled in SlicerDMRI extension)
• VTK_to_DICOMTract (cli, bundled in SlicerDMRI extension)

Process

• DiffusionWeightedVolumeMasking (cli, bundled in SlicerDMRI extension)
• DWIToDTIEstimation (cli, bundled in SlicerDMRI extension)

Quantify

• DiffusionTensorScalarMeasurements (cli, bundled in SlicerDMRI extension)
• FiberTractMeasurements (cli, bundled in SlicerDMRI extension)

Tractography

• TractographyInteractiveSeeding (loadable, bundled in SlicerDMRI extension)
• TractographyDisplay (loadable, bundled in SlicerDMRI extension)
• UKFTractography (cli, bundled in UKFTractography extension)

Region-based

• TractographyLabelMapSeeding (cli, bundled in SlicerDMRI extension)
• FiberBundleLabelSelect (cli, bundled in SlicerDMRI extension)

Utilities

• BRAINSDWICleanup (cli, built-in)
• ResampleDTIVolume (cli, built-in)
• FiberBundleToLabelMap (scripted, bundled in SlicerDMRI extension)
• ResampleScalarVectorDWIVolume (cli, built-in)
• DICOM2FullBrainTractography (scripted, bundled in SlicerDMRI extension)

Editor Effects

• WindowLevelEffect (scripted, bundled in WindowLevelEffect extension)

EditorEffect

• PETTumorSegmentation (loadable, bundled in PETTumorSegmentation extension)

Endoscopy

• Endoscopy (scripted, built-in)

Examples

• FastGrowCut (loadable, bundled in FastGrowCutEffect extension)
• QuickTCGA (loadable, bundled in SlicerPathology extension)
• FastGrowCutSegmenter (loadable, bundled in CarreraSlice extension)
• ShortCutCore (loadable, bundled in SlicerPathology extension)
• GraphCutInteractiveSegmenter (loadable, bundled in GraphCutSegment extension)
• CarreraSlice (loadable, bundled in CarreraSlice extension)

Exporter

• SlicerToKiwiExporter (scripted, bundled in SlicerToKiwiExporter extension)

Filter

• IslandRemoval (cli, built-in)

Filtering

• SegmentationSmoothing (cli, bundled in SlicerProstate extension)
• N4ITKBiasFieldCorrection (cli, built-in)
• ImageLabelCombine (cli, built-in)
• VotingBinaryHoleFillingImageFilter (cli, built-in)
• CheckerBoardFilter (cli, built-in)
• AstroSmoothing (loadable, bundled in SlicerAstro extension)
• ExtractSkeleton (cli, built-in)
• SimpleFilters (scripted, built-in)
• ThresholdScalarVolume (cli, built-in)
• HistogramMatching (cli, built-in)

Arithmetic

• MultiplyScalarVolumes (cli, built-in)
• AddScalarVolumes (cli, built-in)
• MaskScalarVolume (cli, built-in)
• SubtractScalarVolumes (cli, built-in)
• CastScalarVolume (cli, built-in)
• BlendVectorVolumes (cli, bundled in OpenCVExample extension)

Denoising

• CurvatureAnisotropicDiffusion (cli, built-in)
• GradientAnisotropicDiffusion (cli, built-in)
• MedianImageFilter (cli, built-in)
• GaussianBlurImageFilter (cli, built-in)

Morphology

• GrayscaleFillHoleImageFilter (cli, built-in)
• GrayscaleGrindPeakImageFilter (cli, built-in)

IGT

• Viewpoint (scripted, bundled in SlicerIGT extension)
• CollectFiducials (loadable, bundled in SlicerIGT extension)
• TransformFusion (loadable, bundled in SlicerIGT extension)
• GyroGuide (scripted, bundled in GyroGuide extension)
• PlusModelCatalogBrowser (scripted, bundled in SlicerIGT extension)
• CreateModels (loadable, bundled in SlicerIGT extension)
• NeedleFinder (scripted, bundled in NeedleFinder extension)
• TrackerStabilizer (loadable, bundled in TrackerStabilizer extension)
• PathExplorer (loadable, bundled in SlicerIGT extension)
• UltrasoundSnapshots (loadable, bundled in SlicerIGT extension)
• BreachWarning (loadable, bundled in SlicerIGT extension)
• FiducialRegistrationWizard (loadable, bundled in SlicerIGT extension)
• ModelRegistration (scripted, bundled in SlicerIGT extension)
• ResectionVolume (scripted, bundled in ResectionPlanner extension)
• PivotCalibration (loadable, bundled in SlicerIGT extension)
• VolumeResliceDriver (loadable, bundled in SlicerIGT extension)
• OpenIGTLinkRemote (loadable, bundled in SlicerIGT extension)
• FiducialsToModelRegistration (scripted, bundled in SlicerIGT extension)
• Watchdog (loadable, bundled in SlicerIGT extension)
• CornerAnnotation (scripted, bundled in CornerAnnotation extension)
• OpenIGTLinkIF (loadable, built-in)
• MarkupsToModel (loadable, bundled in SlicerIGT extension)
• iGyne (scripted, bundled in iGyne extension)
• PlusRemote (scripted, bundled in SlicerIGT extension)

Informatics

• tid1500writer (cli, bundled in DCMQI extension)
• mpReviewPreprocessor (scripted, bundled in mpReview extension)
• SEG2NRRD (cli)
• TCIABrowser (scripted, bundled in TCIABrowser extension)
• segimage2itkimage (cli, bundled in DCMQI extension)
• mpReview (scripted, bundled in mpReview extension)
• Tables (loadable, built-in)
• Data (loadable, built-in)
• DumpSEGFrame (cli)
• tid1500reader (cli, bundled in DCMQI extension)
• Terminologies (loadable, built-in)
• Units (loadable, built-in)
• DICOM (scripted, built-in)
• SampleData (scripted, built-in)
• Colors (loadable, built-in)
• CurveMaker (scripted, bundled in CurveMaker extension)
• Annotations (loadable, built-in)
• Markups (loadable, built-in)
• SubjectHierarchy (loadable, built-in)
• QuantitativeReporting (scripted, bundled in QuantitativeReporting extension)

Converters

• itkimage2paramap (cli, bundled in DCMQI extension)
• paramap2itkimage (cli, bundled in DCMQI extension)
• itkimage2segimage (cli, bundled in DCMQI extension)
• EncodeSEG (cli)

Legacy

Converters

• BSplineToDeformationField (cli, built-in)

Filtering

• OtsuThresholdImageFilter (cli, built-in)
• ResampleScalarVolume (cli, built-in)

Registration

• TestGridTransformRegistration (cli, built-in)
• ExpertAutomatedRegistration (cli, built-in)

Work in Progress

Diffusion Tensor

Test

• DiffusionTensorTest (cli, built-in)

Libraries

• OpenCV (loadable, bundled in SlicerOpenCV extension)

Machine Learning

• DeepInfer (scripted, bundled in DeepInfer extension)

Margin Calculator

• MarginCalculator (scripted, bundled in MarginCalculator extension)
• DoseMorphology (loadable, bundled in MarginCalculator extension)
• SyntheticRTDose (scripted, bundled in MarginCalculator extension)

Mesh Generation

• CleaverCLI (cli, bundled in CleaverExtension extension)

MeshGeneration

• BodyCentricCubicMesh (cli, bundled in CBC_3D_I2MConversion extension)

Microscopy

• IASEMImportSeries (cli, bundled in IASEM extension)
• IASEMImport (cli, bundled in IASEM extension)
• BinShrink (cli, bundled in IASEM extension)
• LabelObjectStatistics (scripted, bundled in IASEM extension)
• SpacingAwareCurvatureDiffusion (cli, bundled in IASEM extension)

MultiVolume Support

• MultiVolumeImporter (scripted, built-in)
• MultiVolumeExplorer (loadable, built-in)

Pathology

• SlicerPathology (scripted, bundled in SlicerPathology extension)

Perk Tutor

• PythonMetricsCalculator (scripted, bundled in PerkTutor extension)
• TransformRecorder (loadable, bundled in PerkTutor extension)
• PerkEvaluator (loadable, bundled in PerkTutor extension)
• WorkflowSegmentation (loadable, bundled in PerkTutor extension)

Plastimatch

• DicomSroExport (scripted, bundled in SlicerRT extension)
• PlmRegister (scripted, bundled in SlicerRT extension)

Registration

• plastimatch_slicer_bspline (cli, bundled in SlicerRT extension)
• plastimatch_slicer_landwarp (cli, bundled in SlicerRT extension)

Utilities

• PlastimatchPy (loadable, bundled in SlicerRT extension)

Quantification

• DSCMRIAnalysis (cli, bundled in DSCMRIAnalysis extension)
• PETLiverUptakeMeasurement (cli, bundled in PETLiverUptakeMeasurement extension)
• PETIndiC (scripted, bundled in PET-IndiC extension)
• Q3DC (scripted, bundled in Q3DC extension)
• HeterogeneityCAD (scripted, bundled in OpenCAD extension)
• ShapeQuantifier (scripted, bundled in ShapeQuantifier extension)
• QuantitativeIndicesCLI (cli, bundled in PET-IndiC extension)
• PETStandardUptakeValueComputation (cli, built-in)
• SUVFactorCalculator (cli, bundled in PETDICOMExtension extension)
• SpinalCurvatureMeasurement (scripted, bundled in Scoliosis extension)
• QuantitativeIndicesTool (scripted, bundled in PET-IndiC extension)
• SegmentStatistics (scripted, built-in)
• LabelStatistics (scripted, built-in)
• MeshStatistics (scripted, bundled in MeshStatisticsExtension extension)
• DWModeling (cli, bundled in SlicerProstate extension)
• BRAINSLabelStats (cli, built-in)
• PkModeling (cli, bundled in PkModeling extension)
• PETSUVImageMaker (cli, bundled in LongitudinalPETCT extension)
• DataProbe (scripted, built-in)
• ModelToModelDistance (cli, bundled in ModelToModelDistance extension)
• T1Mapping (cli, bundled in T1Mapping extension)
• SlicerAstroDataProbe (scripted, bundled in SlicerAstro extension)
• AnglePlanes (scripted, bundled in ShapeQuantifier extension)
• dPetBrainQuantification (scripted, bundled in PetSpectAnalysis extension)
• PickAndPaint (scripted, bundled in PickAndPaintExtension extension)
• QuantitativeReporting (scripted, bundled in QuantitativeReporting extension)
• DiceComputation (loadable, bundled in DiceComputation extension)

ChangeQuantification

• IntensityDifferenceMetric (cli, bundled in ChangeTracker extension)

Radiology

• SliceTracker (scripted, bundled in SliceTracker extension)
• SliceTrackerRegistration (scripted, bundled in SliceTracker extension)
• SliceTrackerZFrameRegistration (scripted, bundled in SliceTracker extension)

Radiotherapy

• Beams (loadable, bundled in SlicerRT extension)
• DvhComparison (scripted, bundled in SlicerRT extension)
• DoseVolumeHistogram (loadable, bundled in SlicerRT extension)
• DicomRtImportExport (loadable, bundled in SlicerRT extension)
• DoseAccumulation (loadable, bundled in SlicerRT extension)
• ExternalBeamPlanning (loadable, bundled in SlicerRT extension)
• SegmentComparison (loadable, bundled in SlicerRT extension)
• PlanarImage (loadable, bundled in SlicerRT extension)
• Isodose (loadable, bundled in SlicerRT extension)
• DoseComparison (loadable, bundled in SlicerRT extension)
• SegmentMorphology (loadable, bundled in SlicerRT extension)
• DicomSroImport (loadable, bundled in SlicerRT extension)

Registration

• Transforms (loadable, built-in)
• BRAINSResize (cli, built-in)
• PerformMetricTest (cli, built-in)
• LandmarkRegistration (scripted, built-in)
• PBNRR (cli, bundled in PBNRR extension)
• BRAINSResample (cli, built-in)
• BRAINSFit (cli, built-in)

CMF Registration

• ApplyMatrix (cli, bundled in CMFreg extension)
• LabelExtraction (cli, bundled in CMFreg extension)
• LabelAddition (cli, bundled in CMFreg extension)
• Downsize (cli, bundled in CMFreg extension)
• SurfaceRegistration (scripted, bundled in CMFreg extension)

Voxelbase Registration

• NonGrowing (cli, bundled in CMFreg extension)
• Growing (cli, bundled in CMFreg extension)
• MaskCreation (cli, bundled in CMFreg extension)

Label Registration

• DistanceMapBasedRegistration (scripted, bundled in SlicerProstate extension)

Specialized

• ACPCTransform (cli, built-in)
• FiducialRegistration (cli, built-in)
• BRAINSDemonWarp (cli, built-in)
• Reformat (loadable, built-in)
• ScatteredTransform (cli, bundled in ScatteredTransform extension)
• VBRAINSDemonWarp (cli, built-in)

Segmentation

• ROBEXBrainExtraction (cli, bundled in ROBEXBrainExtraction extension)
• EMSegmentQuick (loadable, built-in)
• VolumeClipWithModel (scripted, bundled in VolumeClip extension)
• ABC (cli, bundled in ABC extension)
• VolumeClipToLabel (scripted, bundled in SliceTracker extension)
• AirwaySegmentationCLI (cli, bundled in AirwaySegmentation extension)
• LAScarSegmenter (cli, bundled in LAScarSegmenter extension)
• SegmentEditor (scripted, built-in)
• AirwaySegmentation (scripted, bundled in AirwaySegmentation extension)
• SkullStripper (cli, bundled in SkullStripper extension)
• SegmentEditorFastMarching (scripted, bundled in SegmentEditorExtraEffects extension)
• SobolevSegmenter (cli, bundled in SobolevSegmenter extension)
• VolumeClipWithRoi (scripted, bundled in VolumeClip extension)
• SegmentCAD (scripted, bundled in OpenCAD extension)
• SwissSkullStripper (cli, bundled in SwissSkullStripper extension)
• SegmentEditorFloodFilling (scripted, bundled in SegmentEditorExtraEffects extension)
• Wasp (scripted, bundled in Wasp extension)
• Editor (scripted, built-in)
• SimpleRegionGrowingSegmentation (cli, built-in)
• EMSegment (loadable, built-in)
• QuantitativeReporting (scripted, bundled in QuantitativeReporting extension)
• IntensitySegmenter (cli, bundled in IntensitySegmenter extension)
• SegmentEditorWatershed (scripted, bundled in SegmentEditorExtraEffects extension)

Specialized

• BRAINSROIAuto (cli, built-in)
• RobustStatisticsSegmenter (cli, built-in)
• EMSegmentCommandLine (cli, built-in)

Sequences

• Sequences (loadable, bundled in Sequences extension)
• SequenceBrowser (loadable, bundled in Sequences extension)
• MetafileImporter (loadable, bundled in Sequences extension)

Slicelets

• FilmDosimetryAnalysis (scripted, bundled in FilmDosimetryAnalysis extension)
• GelDosimetryAnalysis (scripted, bundled in GelDosimetryAnalysis extension)
• GelDosimetryAnalysisAlgo (loadable, bundled in GelDosimetryAnalysis extension)

SlicerProstate

• ZFrameCalibration (cli, bundled in SliceTracker extension)

Surface Models

• SurfaceToolbox (scripted, built-in)
• GrayscaleModelMaker (cli, built-in)
• ModelMaker (cli, built-in)
• ModelToLabelMap (cli, built-in)
• MergeModels (cli, built-in)
• EasyClip (scripted, bundled in EasyClip extension)
• LabelMapSmoothing (cli, built-in)
• MeshToLabelMap (cli, bundled in MeshToLabelMap extension)
• ProbeVolumeWithModel (cli, built-in)
• TextureModel (scripted, bundled in SlicerIGT extension)

TestCases

• SEGExporterSelfTest

Testing

• CLI4Test
• ThresholdThreadingTest
• ScoliosisMonitoring (scripted, bundled in Scoliosis extension)
• SlicerMRBSaveRestoreCheckPathsTest
• CLIROITest (cli, built-in)
• PerformanceTests
• SlicerMRBMultipleSaveRestoreTest
• SlicerMRBTest
• SEGExporterSelfTest
• SelfTests
• SlicerMRBMultipleSaveRestoreLoopTest

IGT Tests

• BreachWarningSelfTest
• WatchdogSelfTest

SlicerRT Tests

• IGRTWorkflow_SelfTest
• BatchStructureSetConversion (scripted, bundled in SlicerRT extension)

TestCases

• AtlasTests
• AddStorableDataAfterSceneViewTest
• test_tractography_display
• SlicerTransformInteractionTest1
• RSNAQuantTutorial
• NeurosurgicalPlanningTutorialMarkupsSelfTest
• ChangeTrackerSelfTest
• FiducialLayoutSwitchBug1914
• GraphCutSegmentSelfTest
• SlicerBoundsTest
• UtilTest
• Charting (scripted, built-in)
• CardiacAgatstonMeasures (scripted, bundled in CardiacAgatstonMeasures extension)
• fiber_visibility_crash2438
• RSNAVisTutorial
• JRC2013Vis
• AddManyMarkupsFiducialTest
• CropVolumeSelfTest
• SliceLinkLogic (scripted, built-in)
• VolumeRenderingSceneClose (scripted, built-in)
• slicerCloseCrashBug2590
• CLIEventTest
• NsgPlanTracto (scripted, bundled in SlicerDMRI extension)
• MarkupsWidgetsSelfTest
• TablesSelfTest
• SlicerOrientationSelectorTest
• MarkupsInViewsSelfTest
• TwoCLIsInParallelTest
• SubjectHierarchyCorePluginsSelfTest
• SubjectHierarchyGenericSelfTest
• ScenePerformance (scripted, built-in)
• MarkupsInCompareViewersSelfTest
• sceneImport2428
• RSNA2012ProstateDemo
• DTINotReproducibleIssue3977
• TwoCLIsInARowTest
• ColorsScalarBarSelfTest
• BRAINSFitRigidRegistrationCrashIssue4139
• Slicer4Minute (scripted, built-in)
• ViewControllersSliceInterpolationBug1926

Ultrasound

• ScanConvertCurvilinearArray (cli, bundled in SlicerITKUltrasound extension)
• ScanConvertPhasedArray3D (cli, bundled in SlicerITKUltrasound extension)
• ScanConvertSliceSeries (cli, bundled in SlicerITKUltrasound extension)

Uncategorized

• ShapeQuantifierCore (scripted, bundled in ShapeQuantifier extension)
• DatabaseInteractorLib (scripted, bundled in DatabaseInteractor extension)

Utilities

• ScreenCapture (scripted, built-in)
• DataStore (loadable, built-in)
• DICOMPatcher (scripted, built-in)
• BRAINSStripRotation (cli, built-in)
• EMSegmentTransformToNewFormat (cli, built-in)

BRAINS

• BRAINSTransformConvert (cli, built-in)

Vascular Modeling Toolkit

• CenterlineComputation (scripted, bundled in VMTK extension)
• LevelSetSegmentation (scripted, bundled in VMTK extension)
• VesselnessFiltering (scripted, bundled in VMTK extension)

Virtual Reality

• VirtualReality (loadable, bundled in SlicerVirtualReality extension)

Web System Tools

• DatabaseInteractor (scripted, bundled in DatabaseInteractor extension)

Wizards

• CompareVolumes (scripted, built-in)
• ChangeTracker (scripted, bundled in ChangeTracker extension)

XNATSlicer

• XnatSlicer (scripted, bundled in XNATSlicer extension)

Modules by name

367 modules:

• ABC (cli, bundled in ABC extension)
• ACPCTransform (cli, built-in)
• AddScalarVolumes (cli, built-in)
• AirwayInspector (loadable, bundled in Chest_Imaging_Platform extension)
• AirwaySegmentation (scripted, bundled in AirwaySegmentation extension)
• AirwaySegmentationCLI (cli, bundled in AirwaySegmentation extension)
• AnglePlanes (scripted, bundled in ShapeQuantifier extension)
• Annotations (loadable, built-in)
• ApplyMatrix (cli, bundled in CMFreg extension)
• AstroMasking (loadable, bundled in SlicerAstro extension)
• AstroModeling (loadable, bundled in SlicerAstro extension)
• AstroMomentMaps (loadable, bundled in SlicerAstro extension)
• AstroProfiles (loadable, bundled in SlicerAstro extension)
• AstroPVDiagram (loadable, bundled in SlicerAstro extension)
• AstroPVSlice (loadable, bundled in SlicerAstro extension)
• AstroReproject (loadable, bundled in SlicerAstro extension)
• AstroSampleData (scripted, bundled in SlicerAstro extension)
• AstroSmoothing (loadable, bundled in SlicerAstro extension)
• AstroStatistics (loadable, bundled in SlicerAstro extension)
• AstroVolume (loadable, bundled in SlicerAstro extension)
• AstroWelcome (loadable, bundled in SlicerAstro extension)
• Beams (loadable, bundled in SlicerRT extension)
• BinShrink (cli, bundled in IASEM extension)
• BlendVectorVolumes (cli, bundled in OpenCVExample extension)
• BodyCentricCubicMesh (cli, bundled in CBC_3D_I2MConversion extension)
• BRAINSDemonWarp (cli, built-in)
• BRAINSDWICleanup (cli, built-in)
• BRAINSFit (cli, built-in)
• BRAINSLabelStats (cli, built-in)
• BRAINSResample (cli, built-in)
• BRAINSResize (cli, built-in)
• BRAINSROIAuto (cli, built-in)
• BRAINSStripRotation (cli, built-in)
• BRAINSTransformConvert (cli, built-in)
• BreachWarning (loadable, bundled in SlicerIGT extension)
• CarreraSlice (loadable, bundled in CarreraSlice extension)
• CastScalarVolume (cli, built-in)
• CenterlineComputation (scripted, bundled in VMTK extension)
• ChangeTracker (scripted, bundled in ChangeTracker extension)
• CheckerBoardFilter (cli, built-in)
• CIP_ (scripted, bundled in Chest_Imaging_Platform extension)
• CIP_BodyComposition (scripted, bundled in Chest_Imaging_Platform extension)
• CIP_CalciumScoring (scripted, bundled in Chest_Imaging_Platform extension)
• CIP_Common (scripted, bundled in Chest_Imaging_Platform extension)
• CIP_InteractiveLobeSegmentation (scripted, bundled in Chest_Imaging_Platform extension)
• CIP_LesionModel (scripted, bundled in Chest_Imaging_Platform extension)
• CIP_MIPViewer (scripted, bundled in Chest_Imaging_Platform extension)
• CIP_PAARatio (scripted, bundled in Chest_Imaging_Platform extension)
• CIP_ParenchymaAnalysis (scripted, bundled in Chest_Imaging_Platform extension)
• CIP_ParenchymaSubtypeTraining (scripted, bundled in Chest_Imaging_Platform extension)
• CIP_PointsLabelling (scripted, bundled in Chest_Imaging_Platform extension)
• CIP_TracheaStentPlanning (scripted, bundled in Chest_Imaging_Platform extension)
• ClassifyFissureParticles (cli, bundled in Chest_Imaging_Platform extension)
• CleaverCLI (cli, bundled in CleaverExtension extension)
• CMRToolkitAutomaticLeftAtrialScar (cli, bundled in Cardiac_MRI_Toolkit extension)
• CMRToolkitAxialDilate (cli, bundled in Cardiac_MRI_Toolkit extension)
• CMRToolkitBooleanREMOVEFilter (cli, bundled in Cardiac_MRI_Toolkit extension)
• CMRToolkitConnectedThresholdFilter (cli, bundled in Cardiac_MRI_Toolkit extension)
• CMRToolkitInhomogeneityCorrection (cli, bundled in Cardiac_MRI_Toolkit extension)
• CMRToolkitIsolatedConnectedFilter (cli, bundled in Cardiac_MRI_Toolkit extension)
• CMRToolkitLASegmentationGraphCuts (cli, bundled in Cardiac_MRI_Toolkit extension)
• CMRToolkitPVAntrumCut (cli, bundled in Cardiac_MRI_Toolkit extension)
• CMRToolkitRegistration (scripted, bundled in Cardiac_MRI_Toolkit extension)
• CMRToolkitRegistrationBRAINSFit (scripted, bundled in Cardiac_MRI_Toolkit extension)
• CMRToolkitWizard (scripted, bundled in Cardiac_MRI_Toolkit extension)
• CollectFiducials (loadable, bundled in SlicerIGT extension)
• Colors (loadable, built-in)
• CompareVolumes (scripted, built-in)
• ComputeCrossSectionalArea (cli, bundled in Chest_Imaging_Platform extension)
• ComputeDistanceMap (cli, bundled in Chest_Imaging_Platform extension)
• ComputeFeatureStrength (cli, bundled in Chest_Imaging_Platform extension)
• ComputeFissureFeatureVectors (cli, bundled in Chest_Imaging_Platform extension)
• ComputeIntensityStatistics (cli, bundled in Chest_Imaging_Platform extension)
• ConvertChestRegionChestTypeToLabelMapValue (cli, bundled in Chest_Imaging_Platform extension)
• ConvertDicom (cli, bundled in Chest_Imaging_Platform extension)
• ConvertLabelMapValueToChestRegionChestType (cli, bundled in Chest_Imaging_Platform extension)
• ConvertVTK (cli, bundled in UKFTractography extension)
• CornerAnnotation (scripted, bundled in CornerAnnotation extension)
• CreateDICOMSeries (cli, built-in)
• CreateModels (loadable, bundled in SlicerIGT extension)
• CropLung (cli, bundled in Chest_Imaging_Platform extension)
• CropVolume (loadable, built-in)
• CurvatureAnisotropicDiffusion (cli, built-in)
• CurveMaker (scripted, bundled in CurveMaker extension)
• Data (loadable, built-in)
• DatabaseInteractor (scripted, bundled in DatabaseInteractor extension)
• DatabaseInteractorLib (scripted, bundled in DatabaseInteractor extension)
• DataProbe (scripted, built-in)
• DataStore (loadable, built-in)
• DeepInfer (scripted, bundled in DeepInfer extension)
• DiceComputation (loadable, bundled in DiceComputation extension)
• DICOM (scripted, built-in)
• DICOM2FullBrainTractography (scripted, bundled in SlicerDMRI extension)
• DICOMPatcher (scripted, built-in)
• DicomRtImportExport (loadable, bundled in SlicerRT extension)
• DicomSroExport (scripted, bundled in SlicerRT extension)
• DicomSroImport (loadable, bundled in SlicerRT extension)
• DICOMTract_to_VTK (cli, bundled in SlicerDMRI extension)
• DiffusionTensorScalarMeasurements (cli, bundled in SlicerDMRI extension)
• DiffusionWeightedVolumeMasking (cli, bundled in SlicerDMRI extension)
• DistanceMapBasedRegistration (scripted, bundled in SlicerProstate extension)
• DMRIInstall (scripted, built-in)
• DoseAccumulation (loadable, bundled in SlicerRT extension)
• DoseComparison (loadable, bundled in SlicerRT extension)
• DoseMorphology (loadable, bundled in MarginCalculator extension)
• DoseVolumeHistogram (loadable, bundled in SlicerRT extension)
• Downsize (cli, bundled in CMFreg extension)
• dPetBrainQuantification (scripted, bundled in PetSpectAnalysis extension)
• DSCMRIAnalysis (cli, bundled in DSCMRIAnalysis extension)
• DumpSEGFrame (cli)
• DvhComparison (scripted, bundled in SlicerRT extension)
• DWIConvert (cli, built-in)
• DWIToDTIEstimation (cli, bundled in SlicerDMRI extension)
• DWModeling (cli, bundled in SlicerProstate extension)
• EasyClip (scripted, bundled in EasyClip extension)
• Editor (scripted, built-in)
• EMSegment (loadable, built-in)
• EMSegmentCommandLine (cli, built-in)
• EMSegmentQuick (loadable, built-in)
• EMSegmentTransformToNewFormat (cli, built-in)
• EncodeSEG (cli)
• Endoscopy (scripted, built-in)
• EnhanceFissuresInImage (cli, bundled in Chest_Imaging_Platform extension)
• EvaluateLungLobeSegmentationResults (cli, bundled in Chest_Imaging_Platform extension)
• ExecuteSystemCommand (cli, bundled in Chest_Imaging_Platform extension)
• ExternalBeamPlanning (loadable, bundled in SlicerRT extension)
• ExtractChestLabelMap (cli, bundled in Chest_Imaging_Platform extension)
• ExtractFissureBoundaryFromLobeMap (cli, bundled in Chest_Imaging_Platform extension)
• ExtractParticlesFromChestRegionChestType (cli, bundled in Chest_Imaging_Platform extension)
• ExtractSkeleton (cli, built-in)
• FastGrowCut (loadable, bundled in FastGrowCutEffect extension)
• FastGrowCutSegmenter (loadable, bundled in CarreraSlice extension)
• FiberBundleLabelSelect (cli, bundled in SlicerDMRI extension)
• FiberBundleToLabelMap (scripted, bundled in SlicerDMRI extension)
• FiberTractMeasurements (cli, bundled in SlicerDMRI extension)
• FiducialRegistration (cli, built-in)
• FiducialRegistrationWizard (loadable, bundled in SlicerIGT extension)
• FiducialsToModelRegistration (scripted, bundled in SlicerIGT extension)
• FilmDosimetryAnalysis (scripted, bundled in FilmDosimetryAnalysis extension)
• FilterAirwayParticleData (cli, bundled in Chest_Imaging_Platform extension)
• FilterConnectedComponents (cli, bundled in Chest_Imaging_Platform extension)
• FilterFissureParticleData (cli, bundled in Chest_Imaging_Platform extension)
• FilterVesselParticleData (cli, bundled in Chest_Imaging_Platform extension)
• FindPatchMatch (cli, bundled in Chest_Imaging_Platform extension)
• FitLobeSurfaceModelsToParticleData (cli, bundled in Chest_Imaging_Platform extension)
• GaussianBlurImageFilter (cli, built-in)
• GelDosimetryAnalysis (scripted, bundled in GelDosimetryAnalysis extension)
• GelDosimetryAnalysisAlgo (loadable, bundled in GelDosimetryAnalysis extension)
• GenerateAtlasConvexHull (cli, bundled in Chest_Imaging_Platform extension)
• GenerateBinaryThinning3D (cli, bundled in Chest_Imaging_Platform extension)
• GenerateDistanceMapFromLabelMap (cli, bundled in Chest_Imaging_Platform extension)
• GenerateImageSubVolumes (cli, bundled in Chest_Imaging_Platform extension)
• GenerateLesionSegmentation (cli, bundled in Chest_Imaging_Platform extension)
• GenerateLobeSurfaceModels (cli, bundled in Chest_Imaging_Platform extension)
• GenerateMedianFilteredImage (cli, bundled in Chest_Imaging_Platform extension)
• GenerateModel (cli, bundled in Chest_Imaging_Platform extension)
• GenerateNLMFilteredImage (cli, bundled in Chest_Imaging_Platform extension)
• GenerateOtsuLungCast (cli, bundled in Chest_Imaging_Platform extension)
• GenerateOverlayImages (cli, bundled in Chest_Imaging_Platform extension)
• GenerateParenchymaPhenotypes (cli, bundled in Chest_Imaging_Platform extension)
• GeneratePartialLungLabelMap (cli, bundled in Chest_Imaging_Platform extension)
• GenerateSimpleLungMask (cli, bundled in Chest_Imaging_Platform extension)
• GenerateStenciledLabelMapFromParticles (cli, bundled in Chest_Imaging_Platform extension)
• GetStructuresInLabelMap (cli, bundled in Chest_Imaging_Platform extension)
• GetTransformationKappa (cli, bundled in Chest_Imaging_Platform extension)
• GetTransformationKappa2D (cli, bundled in Chest_Imaging_Platform extension)
• GetTransformationSimilarityMetric (cli, bundled in Chest_Imaging_Platform extension)
• GradientAnisotropicDiffusion (cli, built-in)
• GraphCutInteractiveSegmenter (loadable, bundled in GraphCutSegment extension)
• GraphCutsOptimization (cli, bundled in Chest_Imaging_Platform extension)
• GrayscaleFillHoleImageFilter (cli, built-in)
• GrayscaleGrindPeakImageFilter (cli, built-in)
• GrayscaleModelMaker (cli, built-in)
• Growing (cli, bundled in CMFreg extension)
• GyroGuide (scripted, bundled in GyroGuide extension)
• HeterogeneityCAD (scripted, bundled in OpenCAD extension)
• HistogramMatching (cli, built-in)
• IASEMImport (cli, bundled in IASEM extension)
• IASEMImportSeries (cli, bundled in IASEM extension)
• iGyne (scripted, bundled in iGyne extension)
• ImageLabelCombine (cli, built-in)
• IntensityDifferenceMetric (cli, bundled in ChangeTracker extension)
• IntensitySegmenter (cli, bundled in IntensitySegmenter extension)
• IslandRemoval (cli, built-in)
• Isodose (loadable, bundled in SlicerRT extension)
• itkimage2paramap (cli, bundled in DCMQI extension)
• itkimage2segimage (cli, bundled in DCMQI extension)
• KUtil (scripted, bundled in CarreraSlice extension)
• LabelAddition (cli, bundled in CMFreg extension)
• LabelExtraction (cli, bundled in CMFreg extension)
• LabelMapFromRegionAndTypePoints (cli, bundled in Chest_Imaging_Platform extension)
• LabelMapSmoothing (cli, built-in)
• LabelObjectStatistics (scripted, bundled in IASEM extension)
• LabelParticlesByChestRegionChestType (cli, bundled in Chest_Imaging_Platform extension)
• LabelStatistics (scripted, built-in)
• LandmarkRegistration (scripted, built-in)
• LAScarSegmenter (cli, bundled in LAScarSegmenter extension)
• LASegmentationWorkflow (scripted, bundled in Cardiac_MRI_Toolkit extension)
• LevelSetSegmentation (scripted, bundled in VMTK extension)
• MarginCalculator (scripted, bundled in MarginCalculator extension)
• Markups (loadable, built-in)
• MarkupsToModel (loadable, bundled in SlicerIGT extension)
• MaskCreation (cli, bundled in CMFreg extension)
• MaskOutLabelMapStructures (cli, bundled in Chest_Imaging_Platform extension)
• MaskScalarVolume (cli, built-in)
• MedianImageFilter (cli, built-in)
• MergeChestLabelMaps (cli, bundled in Chest_Imaging_Platform extension)
• MergeModels (cli, built-in)
• MergeParticleDataSets (cli, bundled in Chest_Imaging_Platform extension)
• MeshStatistics (scripted, bundled in MeshStatisticsExtension extension)
• MeshToLabelMap (cli, bundled in MeshToLabelMap extension)
• MetafileImporter (loadable, bundled in Sequences extension)
• ModelMaker (cli, built-in)
• ModelRegistration (scripted, bundled in SlicerIGT extension)
• Models (loadable, built-in)
• ModelToLabelMap (cli, built-in)
• ModelToModelDistance (cli, bundled in ModelToModelDistance extension)
• mpReview (scripted, bundled in mpReview extension)
• mpReviewPreprocessor (scripted, bundled in mpReview extension)
• MultiplyScalarVolumes (cli, built-in)
• MultiVolumeExplorer (loadable, built-in)
• MultiVolumeImporter (scripted, built-in)
• N4ITKBiasFieldCorrection (cli, built-in)
• NeedleFinder (scripted, bundled in NeedleFinder extension)
• NonGrowing (cli, bundled in CMFreg extension)
• OpenCV (loadable, bundled in SlicerOpenCV extension)
• OpenIGTLinkIF (loadable, built-in)
• OpenIGTLinkRemote (loadable, bundled in SlicerIGT extension)
• OrientScalarVolume (cli, built-in)
• paramap2itkimage (cli, bundled in DCMQI extension)
• ParticlesDisplay (loadable, bundled in Chest_Imaging_Platform extension)
• PathExplorer (loadable, bundled in SlicerIGT extension)
• PBNRR (cli, bundled in PBNRR extension)
• PerformMetricTest (cli, built-in)
• PerformMorphological (cli, bundled in Chest_Imaging_Platform extension)
• PerkEvaluator (loadable, bundled in PerkTutor extension)
• PerturbParticles (cli, bundled in Chest_Imaging_Platform extension)
• PETIndiC (scripted, bundled in PET-IndiC extension)
• PETLiverUptakeMeasurement (cli, bundled in PETLiverUptakeMeasurement extension)
• PETStandardUptakeValueComputation (cli, built-in)
• PETSUVImageMaker (cli, bundled in LongitudinalPETCT extension)
• PETTumorSegmentation (loadable, bundled in PETTumorSegmentation extension)
• Philips4dUsDicomPatcher (scripted, bundled in SlicerHeart extension)
• PickAndPaint (scripted, bundled in PickAndPaintExtension extension)
• PivotCalibration (loadable, bundled in SlicerIGT extension)
• PkModeling (cli, bundled in PkModeling extension)
• PlanarImage (loadable, bundled in SlicerRT extension)
• plastimatch_slicer_bspline (cli, bundled in SlicerRT extension)
• plastimatch_slicer_landwarp (cli, bundled in SlicerRT extension)
• PlastimatchPy (loadable, bundled in SlicerRT extension)
• PlmRegister (scripted, bundled in SlicerRT extension)
• PlusModelCatalogBrowser (scripted, bundled in SlicerIGT extension)
• PlusRemote (scripted, bundled in SlicerIGT extension)
• ProbeVolumeWithModel (cli, built-in)
• PythonMetricsCalculator (scripted, bundled in PerkTutor extension)
• Q3DC (scripted, bundled in Q3DC extension)
• QuadEdgeSurfaceMesher (cli, bundled in SlicerProstate extension)
• QualityControl (cli, bundled in Chest_Imaging_Platform extension)
• QuantitativeIndicesCLI (cli, bundled in PET-IndiC extension)
• QuantitativeIndicesTool (scripted, bundled in PET-IndiC extension)
• QuantitativeReporting (scripted, bundled in QuantitativeReporting extension)
• QuickTCGA (loadable, bundled in SlicerPathology extension)
• ReadDicomWriteTags (cli, bundled in Chest_Imaging_Platform extension)
• ReadNRRDsWriteVTK (cli, bundled in Chest_Imaging_Platform extension)
• ReadVidaWriteCIP (cli, bundled in Chest_Imaging_Platform extension)
• ReadVTKWriteNRRDs (cli, bundled in Chest_Imaging_Platform extension)
• ReadWriteImageData (cli, bundled in Chest_Imaging_Platform extension)
• ReadWriteRegionAndTypePoints (cli, bundled in Chest_Imaging_Platform extension)
• Reformat (loadable, built-in)
• RegionType (loadable, bundled in Chest_Imaging_Platform extension)
• RegionTypeLocationsToROIVolume (cli, bundled in Chest_Imaging_Platform extension)
• RegisterCT (cli, bundled in Chest_Imaging_Platform extension)
• RegisterLabelMaps (cli, bundled in Chest_Imaging_Platform extension)
• RegisterLungAtlas (cli, bundled in Chest_Imaging_Platform extension)
• RemapLabelMap (cli, bundled in Chest_Imaging_Platform extension)
• RemoveChestTypeFromLabelMapUsingParticles (cli, bundled in Chest_Imaging_Platform extension)
• RemoveParticlesFromParticlesDataSet (cli, bundled in Chest_Imaging_Platform extension)
• ResampleCT (cli, bundled in Chest_Imaging_Platform extension)
• ResampleDTIlogEuclidean (cli, bundled in ResampleDTIlogEuclidean extension)
• ResampleDTIVolume (cli, built-in)
• ResampleLabelMap (cli, bundled in Chest_Imaging_Platform extension)
• ResampleScalarVectorDWIVolume (cli, built-in)
• RescaleLabelMap (cli, bundled in Chest_Imaging_Platform extension)
• ResectionVolume (scripted, bundled in ResectionPlanner extension)
• ROBEXBrainExtraction (cli, bundled in ROBEXBrainExtraction extension)
• RobustStatisticsSegmenter (cli, built-in)
• SampleData (scripted, built-in)
• ScanConvertCurvilinearArray (cli, bundled in SlicerITKUltrasound extension)
• ScanConvertPhasedArray3D (cli, bundled in SlicerITKUltrasound extension)
• ScanConvertSliceSeries (cli, bundled in SlicerITKUltrasound extension)
• ScarVisualization (scripted, bundled in Cardiac_MRI_Toolkit extension)
• ScatteredTransform (cli, bundled in ScatteredTransform extension)
• SceneViews (loadable, built-in)
• ScreenCapture (scripted, built-in)
• SEG2NRRD (cli)
• segimage2itkimage (cli, bundled in DCMQI extension)
• Segmentations (loadable, built-in)
• SegmentationSmoothing (cli, bundled in SlicerProstate extension)
• SegmentCAD (scripted, bundled in OpenCAD extension)
• SegmentComparison (loadable, bundled in SlicerRT extension)
• SegmentEditor (scripted, built-in)
• SegmentEditorFastMarching (scripted, bundled in SegmentEditorExtraEffects extension)
• SegmentEditorFloodFilling (scripted, bundled in SegmentEditorExtraEffects extension)
• SegmentEditorWatershed (scripted, bundled in SegmentEditorExtraEffects extension)
• SegmentLungAirways (cli, bundled in Chest_Imaging_Platform extension)
• SegmentLungLobes (cli, bundled in Chest_Imaging_Platform extension)
• SegmentMorphology (loadable, bundled in SlicerRT extension)
• SegmentStatistics (scripted, built-in)
• SequenceBrowser (loadable, bundled in Sequences extension)
• Sequences (loadable, bundled in Sequences extension)
• ShapeQuantifier (scripted, bundled in ShapeQuantifier extension)
• ShapeQuantifierCore (scripted, bundled in ShapeQuantifier extension)
• ShortCutCore (loadable, bundled in SlicerPathology extension)
• SimpleFilters (scripted, built-in)
• SimpleRegionGrowingSegmentation (cli, built-in)
• SkullStripper (cli, bundled in SkullStripper extension)
• SlicerAstroDataProbe (scripted, bundled in SlicerAstro extension)
• SlicerPathology (scripted, bundled in SlicerPathology extension)
• SlicerToKiwiExporter (scripted, bundled in SlicerToKiwiExporter extension)
• SliceTracker (scripted, bundled in SliceTracker extension)
• SliceTrackerRegistration (scripted, bundled in SliceTracker extension)
• SliceTrackerZFrameRegistration (scripted, bundled in SliceTracker extension)
• SobolevSegmenter (cli, bundled in SobolevSegmenter extension)
• SpacingAwareCurvatureDiffusion (cli, bundled in IASEM extension)
• SpinalCurvatureMeasurement (scripted, bundled in Scoliosis extension)
• SplitLeftLungRightLung (cli, bundled in Chest_Imaging_Platform extension)
• SubjectHierarchy (loadable, built-in)
• SubtractScalarVolumes (cli, built-in)
• SurfaceRegistration (scripted, bundled in CMFreg extension)
• SurfaceToolbox (scripted, built-in)
• SUVFactorCalculator (cli, bundled in PETDICOMExtension extension)
• SwissSkullStripper (cli, bundled in SwissSkullStripper extension)
• SyntheticRTDose (scripted, bundled in MarginCalculator extension)
• T1Mapping (cli, bundled in T1Mapping extension)
• Tables (loadable, built-in)
• TCIABrowser (scripted, bundled in TCIABrowser extension)
• Terminologies (loadable, built-in)
• TextureModel (scripted, bundled in SlicerIGT extension)
• ThresholdScalarVolume (cli, built-in)
• tid1500reader (cli, bundled in DCMQI extension)
• tid1500writer (cli, bundled in DCMQI extension)
• TrackerStabilizer (loadable, bundled in TrackerStabilizer extension)
• TractographyDisplay (loadable, bundled in SlicerDMRI extension)
• TractographyInteractiveSeeding (loadable, bundled in SlicerDMRI extension)
• TractographyLabelMapSeeding (cli, bundled in SlicerDMRI extension)
• TransferRegionAndTypeIndicesToFromPoints (cli, bundled in Chest_Imaging_Platform extension)
• TransformFusion (loadable, bundled in SlicerIGT extension)
• TransformRecorder (loadable, bundled in PerkTutor extension)
• Transforms (loadable, built-in)
• UKFTractography (cli, bundled in UKFTractography extension)
• UltrasoundSnapshots (loadable, bundled in SlicerIGT extension)
• Units (loadable, built-in)
• ValveView (scripted, bundled in SlicerHeart extension)
• VBRAINSDemonWarp (cli, built-in)
• VectorToScalarVolume (scripted, built-in)
• VesselnessFiltering (scripted, bundled in VMTK extension)
• VffFileReader (loadable, bundled in SlicerRT extension)
• ViewControllers (loadable, built-in)
• Viewpoint (scripted, bundled in SlicerIGT extension)
• VirtualReality (loadable, bundled in SlicerVirtualReality extension)
• VolumeClipToLabel (scripted, bundled in SliceTracker extension)
• VolumeClipWithModel (scripted, bundled in VolumeClip extension)
• VolumeClipWithRoi (scripted, bundled in VolumeClip extension)
• VolumeRendering (loadable, built-in)
• VolumeResliceDriver (loadable, bundled in SlicerIGT extension)
• Volumes (loadable, built-in)
• VotingBinaryHoleFillingImageFilter (cli, built-in)
• VTK_to_DICOMTract (cli, bundled in SlicerDMRI extension)
• Wasp (scripted, bundled in Wasp extension)
• Watchdog (loadable, bundled in SlicerIGT extension)
• Welcome (loadable, built-in)
• WindowLevelEffect (scripted, bundled in WindowLevelEffect extension)
• WorkflowSegmentation (loadable, bundled in PerkTutor extension)
• XnatSlicer (scripted, bundled in XNATSlicer extension)
• ZFrameCalibration (cli, bundled in SliceTracker extension)

• Extensions by category

Extensions by category

33 categories:

• Astronomy
• Cardiac
• Cardiac MRI toolkit
• Chest Imaging Platform
• Converters
• Developer Tools
• DICOM
• Diffusion
• Digital Pathology
• Editor Effects
• Examples
• Exporter
• Filtering
• IGT
• Informatics
• Libraries
• Machine Learning
• Mesh Generation
• Microscopy
• Nuclear Medicine
• Quantification
• Radiotherapy
• Registration
• Remote
• Scoliosis
• Segmentation
• Sequences
• Shape Analysis
• Tractography
• Training
• Vascular Modeling Toolkit
• Virtual Reality
• Web System Tools
• Wizards

Astronomy

• SlicerAstro

Cardiac

• SlicerHeart
• CardiacAgatstonMeasures

Cardiac MRI toolkit

• Cardiac_MRI_Toolkit

Chest Imaging Platform

• Chest_Imaging_Platform

Converters

• PETDICOMExtension

Developer Tools

• ArduinoController
• CUDA Probe
• DeveloperToolsForExtensions
• DebuggingTools
• ImageMaker
• MatlabBridge

DICOM

• DCMQI

Diffusion

• SlicerDMRI
• ResampleDTIlogEuclidean

Digital Pathology

• SlicerPathology

Editor Effects

• WindowLevelEffect

Examples

• OpenCVExample

Exporter

• SlicerToKiwiExporter

Filtering

• SlicerITKUltrasound

IGT

• GyroGuide
• TrackerStabilizer
• CornerAnnotation
• SliceTracker
• PercutaneousApproachAnalysis
• NeedleFinder
• SlicerIGT
• iGyne
• ResectionPlanner

Informatics

• CurveMaker
• LongitudinalPETCT
• mpReview
• TCIABrowser
• SlicerProstate
• QuantitativeReporting

Libraries

• SlicerOpenCV

Machine Learning

• DeepInfer

Mesh Generation

• CBC_3D_I2MConversion
• CleaverExtension

Microscopy

• IASEM

Nuclear Medicine

• PetSpectAnalysis

Quantification

• DSCMRIAnalysis
• ImageCompare
• ModelToModelDistance
• T1Mapping
• ShapeQuantifier
• DiceComputation
• PETLiverUptakeMeasurement
• PET-IndiC
• PkModeling
• ShapeVariationAnalyzer

Radiotherapy

• FilmDosimetryAnalysis
• MarginCalculator
• SlicerRT
• GelDosimetryAnalysis

Registration

• ScatteredTransform
• CMFreg
• PBNRR
• MultiLevelRegistration

Remote

• XNATSlicer

Scoliosis

• Scoliosis

Segmentation

• GraphCutSegment
• ABC
• ROBEXBrainExtraction
• SwissSkullStripper
• CarreraSlice
• SkullStripper
• PETTumorSegmentation
• LAScarSegmenter
• SegmentEditorExtraEffects
• OpenCAD
• IntensitySegmenter
• Wasp
• AirwaySegmentation
• SobolevSegmenter
• FastGrowCutEffect
• VolumeClip

Sequences

• Sequences

Shape Analysis

• MeshToLabelMap
• Q3DC
• EasyClip
• PickAndPaintExtension
• MeshStatisticsExtension
• SPHARM-PDM
• SkeletalRepresentation

Tractography

• UKFTractography

Training

• PerkTutor

Vascular Modeling Toolkit

• VMTK

Virtual Reality

• SlicerVirtualReality

Web System Tools

• DatabaseInteractor

Wizards

• ChangeTracker