EMSegmenter-Tasks:cineMRI

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Anatomical Tree

-- Define Anatomical Tree used in mrml file - first list the complete name and then the abbreviating used in the mrml file

• root
  • background
  • Myocardium
  • Right Ventricle
  • Left Ventricle

Result

show original scans with segmentation as in the example below

Collaborators

Benoit Desjardins (UPenn)

Acknowledgment

The construction of the pipeline was supported by funding from NIH NCRR 2P41RR013218 Supplement.

Citations

• Pohl K, Bouix S, Nakamura M, Rohlfing T, McCarley R, Kikinis R, Grimson W, Shenton M, Wells W. A Hierarchical Algorithm for MR Brain Image Parcellation. IEEE Transactions on Medical Imaging. 2007 Sept;26(9):1201-1212.