EMSegmenter-Tasks:Non-Human-Primate

Description

Non Human Primate pipeline ...TODO

Anatomical Tree

• Root
  • Head
    • intracranial cavity (ICC)
      • TODO (WGC)
        • grey matter (GM)
          • TODO (lSGM)
            • left caudate (lCaudate)
            • left putamen (lPutamen)
            • left hippocampus (lHippocampus)
          • TODO (rSGM)
            • right caudate (rCaudate)
            • right putamen (rPutamen)
            • right hippocampus (rHippocampus)
          • TODO (CGM)
        • white matter (WM)
        • cerebrospinal fluid (CSF)
      • Brainstem
      • Cerebellum
    • background (BG)

Atlas

Image Dimension = 256 x 256 x 252
Image Spacing = 0.4688 x 0.4688 x 0.50002

Pre-Processing

• 1 step: image inhomogeneity correction N4ITKBiasFieldCorrection
• 2 step: atlas-to-target registration BRAINSFit
• 3 step: automatic mean/covariance calculation. (TODO Kilian)

Result

Collaborators

Andriy Fedorov (BWH)