EMSegmenter-Tasks:MRI-Human-Brain

MRI Human Brain

Description

MRI Human Head pipeline

Anatomical Tree

• root
  • background (BG)
    • air (AIR)
    • skull (skull)
  • intracranial cavity (ICC)
    • white matter (WM)
    • grey matter (GM)
    • cerebrospinal fluid (CSF)

Atlas

Image Dimension = 256 x 256 x 124
Image Spacing = 0.9375 x 0.9375 x 0.1.5

Pre-Processing

• 1 step: image inhomogeneity correction N4ITKBiasFieldCorrection
• 2 step: atlas-to-target registration BRAINSFit
• 3 step: automatic mean/covariance calculation. (TODO Kilian)

Result