EMSegmenter-Tasks:MRI-Human-Brain-Parcellation

Description

MRI Human Head pipeline for a finer-grained parcellation

Anatomical Tree

Legend:
BG: background
LT: left temporal
RT: right temporal
GM: grey matter
WM: white matter
CSF: cerebrospinal fluid

Tree:

• Root
  • BG
  • GM
    • LTGM
      • LTGM1
      • LTGM2
      • LTGM3
      • LTGM4
    • RTGM
      • RTGM1
      • RTGM2
      • RTGM3
      • RTGM4
    • SUBGM
  • WM
    • LTWM
      • LTWM1
      • LTWM2
      • LTWM3
      • LTWM4
    • RTWM
      • RTWM1
      • RTWM2
      • RTWM3
      • RTWM4
    • SUBWM
  • CSF

Pre-Processing

Pre procssing includes atlas-to-target registration, image inhomogeneity correction, and automatic mean/covariance calculation.

Result

Collaborators

Padmapriya Srinivasan and Sylvain Bouix (PNL-BWH)