GtractResampleAnisotropy

Resample Anisotropy

Resample Anisotropy

User Interface

Output

Caption

General Information

Module Type & Category

Type: CLI

Category: Diffusion.GTRACT

Authors, Collaborators & Contact

Author: This tool was developed by Vincent Magnotta and Greg Harris.

Contributors:

Contact: name, email

Module Description

Program title	Resample Anisotropy
Program description	This program will resample a floating point image using either the Rigid or B-Spline transform. You may want to save the aligned B0 image after each of the anisotropy map co-registration steps with the anatomical image to check the registration quality with another tool.
Program version	4.0.0
Program documentation-url	http://wiki.slicer.org/slicerWiki/index.php/Modules:GTRACT

Usage

Use Cases, Examples

This module is especially appropriate for these use cases:

• Use Case 1:
• Use Case 2:

Examples of the module in use:

• Example 1:
• Example 2:

Tutorials

• Tutorial 1
  • Data Set 1

Quick Tour of Features and Use

A list panels in the interface, their features, what they mean, and how to use them.

Input Parameters Input Anisotropy Image Volume [--inputAnisotropyVolume] : Required: input file containing the anisotropy image Input Anatomical Image Volume [--inputAnatomicalVolume] : Required: input file containing the anatomical image whose characteristics will be cloned. Input Transform [--inputTransform] : Required: input Rigid OR Bspline transform file name Transform Type [--transformType] : Transform type: Rigid, B-Spline Default value: Rigid Output File Output Anisotropy Image Volume [--outputVolume] : Required: name of output NRRD file containing the resampled transformed anisotropy image.

User Interface

Development

Notes from the Developer(s)

Algorithms used, library classes depended upon, use cases, etc.

Dependencies

Other modules or packages that are required for this module's use.

Tests

On the Dashboard, these tests verify that the module is working on various platforms:

• MyModuleTest1 MyModuleTest1.cxx
• MyModuleTest2 MyModuleTest2.cxx

Known bugs

Links to known bugs in the Slicer3 bug tracker

• Bug 000: description

Usability issues

Follow this link to the Slicer3 bug tracker. Please select the usability issue category when browsing or contributing.

Source code & documentation

Links to the module's source code:

Source code:

• file.cxx
• file.h

Doxygen documentation:

• class1

More Information

Acknowledgment

Funding for this version of the GTRACT program was provided by NIH/NINDS R01NS050568-01A2S1

References

Publications related to this module go here. Links to pdfs would be useful.