Modules:BRAINSDemonWarp
Return to Slicer 3.6 Documentation
Module Name
MyModule
General Information
Module Type & Category
Type: Interactive
Category: Registration
Authors, Collaborators & Contact
- Author: Tom Vercauteren : Institut National de Recherche En Informatique Et En Automatique
- Contributor: Hans J. Johnson : University of Iowa
- Contributor2: Kent WIlliams : University of Iowa
- Contact: Hans J. Johnson hans-johnson@uiowa.edu
Module Description
Overview of what the module does goes here.
Usage
BRAINSDemonWarp is a command line program for image registration by using different methods including Thirion and diffeomorphic demons algorithms. The function takes in a template image and a target image along with other optional parameters and registers the template image onto the target image. The resultant deformation fields and metric values can be written to a file. The program uses the Insight Toolkit (www.ITK.org) for all the computations, and can operate on any of the image types supported by that library.
Use Cases, Examples
BRAINSDemonWarp's purpose is to register one anatomical image to another, i.e. to transform an image so that the anatomical features are aligned with the same anatomical features in another image. The transformed image is called the 'moving image', the image to which the moving image is aligned is called the 'fixed image.'
Tutorials
Links to tutorials explaining how to use this module:
- Tutorial 1
- Data Set 1
Quick Tour of Features and Use
A list panels in the interface, their features, what they mean, and how to use them. For instance:
|
Development
Notes from the Developer(s)
Algorithms used, library classes depended upon, use cases, etc.
Dependencies
Other modules or packages that are required for this module's use.
Tests
On the Dashboard, these tests verify that the module is working on various platforms:
- MyModuleTest1 MyModuleTest1.cxx
- MyModuleTest2 MyModuleTest2.cxx
Known bugs
Links to known bugs in the Slicer3 bug tracker
Usability issues
Follow this link to the Slicer3 bug tracker. Please select the usability issue category when browsing or contributing.
Source code & documentation
Links to the module's source code:
Source code:
Doxygen documentation:
More Information
Acknowledgment
Include funding and other support here.
References
Publications related to this module go here. Links to pdfs would be useful.
