Slicer-3.6-QA
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- This page contains our assessment of the Slicer 3.6 modules
- See also the module culling event at the end of April 2010
Contents
Testing Status
Core Modules
| Score | Name | Documentation | Help [1] | Acknowledgment [2] | Test coverage [3] | valgrind errors | Current Owner |
|---|---|---|---|---|---|---|---|
| Gold | my module | complete | yes and yes | yes, yes, yes | 80% | 0 | DNK |
| ?? | Camera | complete | yes, no link | no | 75% | unknown | Sebastien Barre |
| ?? | Volumes | complete | yes and yes | yes and yes | 44% | unknown | Steve Pieper |
| ?? | Diffusion Editor | complete | yes and yes | no | 65%* | unknown | CF Westin |
| ?? | Models | complete | yes and yes | yes and yes | 12% | unknown | Alex Yarmarkovic |
| ?? | Measurements | complete | yes and yes | no and yes | 46% | unknown | Nicole Aucoin |
| ?? | Fiducials | complete | yes and yes | no | 7% | unknown | Nicole |
| ?? | Data | complete | yes and yes | yes and yes | 0% | unknown | Steve Pieper |
| ?? | Slices | complete | no | no | 0% | unknown | Jim Miller |
| ?? | Colors | complete | yes and no | yes and no | 0% | unknown | Nicole Aucoin |
| ?? | Interactive Editor | complete | no and yes | yes and no | 0% | unknown | Steve Pieper |
| ?? | ROI Module | complete | no and yes | no and yes | 0% | unknown | Alex Yarmarkovic |
| ?? | Volume Rendering | complete | yes and yes | no and yes | 0% | unknown | Yanling Liu |
Application CLI Modules
| Score | Name | Documentation | Help [1] | Acknowledgment [2] | Test coverage [3] | valgrind errors | Current Owner |
|---|---|---|---|---|---|---|---|
| Gold | my module | complete | yes and yes | yes, yes, yes | 80% | 0 | |
| ?? | DiffusionWeightedTest | 69.8% | 0 | ||||
| ?? | DiffusionTensorEstimation | complete | 79.7% | 9 | Raul San Jose Estepar | ||
| ?? | DiffusionTensorMathematics | 56.2% | 5 | ||||
| ?? | OrientImage | complete | 85.7% | unknown | Bill Lorensen | ||
| ?? | LinearRegistration | complete | 66.7% | unknown | Daniel Blezek | ||
| ?? | RigidRegistration | 1.0% | unknown | ||||
| ?? | AffineRegistration | 1.4% | unknown | Casey Goodlett | |||
| ?? | BSplineDeformableRegistration | complete | 82.3% | unknown | Bill Lorensen | ||
| ?? | TestGridTransformRegistration | 90.7% | unknown | ||||
| ?? | CheckerBoard | complete | 67.4% | unknown | Bill Lorensen | ||
| ?? | ResampleVolume | complete | 57.1% | unknown | Bill Lorensen | ||
| ?? | PolyDataToLabelmap | 87.9% | unknown | ||||
| ?? | GaussianBlurImageFilter | complete | 55.9% | unknown | Julien Jomier, Stephen Aylward | ||
| ?? | ConfidenceConnected | 87.5% | unknown | ||||
| ?? | ExecutionModelTour | 87.2% | unknown | ||||
| ?? | ImageReadDicomWrite | 86.1% | unknown | ||||
| ?? | CurvatureAnisotropicDiffusion | complete | 64.3% | unknown | Bill Lorensen | ||
| ?? | GradientAnisotropicDiffusion | complete | 63.4% | unknown | Bill Lorensen | ||
| ?? | MedianImageFilter | complete | 51.1% | unknown | Bill Lorensen | ||
| ?? | DWIDicomLoad | 0% | unknown | ||||
| ?? | HistogramMatching | complete | 65.0% | unknown | Bill Lorensen | ||
| ?? | OtsuThresholdImageFilter | 100% | unknown | ||||
| ?? | OtsuThresholdSegmentation | complete | 90.9% | unknown | Bill Lorensen | ||
| ?? | Subtract | complete | 71.7% | unknown | Bill Lorensen | ||
| ?? | Multiply | 77.6% | unknown | ||||
| ?? | Add | complete | 84.9% | unknown | Bill Lorensen | ||
| ?? | Threshold | 55.8% | unknown | ||||
| ?? | Mask | complete | 80.0% | unknown | Nicole Aucoin | ||
| ?? | Cast | complete | 14.6% | unknown | Nicole Aucoin | ||
| ?? | VotingBinaryHoleFillingImageFilter | complete | 100% | unknown | Bill Lorensen | ||
| ?? | ModelMaker | complete | 57.4% | unknown | Nicole Aucoin | ||
| ?? | MultipleModelsExample | 1.9% | unknown | ||||
| ?? | GrayscaleModelMaker | no | 82.1% | unknown | Bill Lorensen | ||
| ?? | MergeModels | 62.7% | unknown | ||||
| ?? | GrayscaleFillHoleImageFilter | complete | 57.1% | unknown | Bill Lorensen | ||
| ?? | GrayscaleGrindPeakImageFilter | complete | 64.5% | unknown | Bill Lorensen | ||
| ?? | LabelMapSmoothing | 87.9% | unknown | ||||
| ?? | ImageLabelCombine | complete | 7.5% | unknown | Alex Yarmarkovich | ||
| ?? | ResampleVolume2 | 46.8% | unknown | ||||
| ?? | ZeroCrossingBasedEdgeDetectionImageFilter | 62.5% | unknown | ||||
| ?? | FreesurferSurfaceSectionExtraction | 60.0% | unknown |
Testing Partition
Most Slicer modules have a GUI component and a Data Processing component.
Testing GUI components is still a challenge, so we will focus here on testing the Data Processing components. This can be done in most cases by partitioning the module into a GUI section and a Data Processing section, where the second one usually takes the form of a C++ class (although that is not a requirement).
The data processing section can be tested by using standard CTest/CMake mechanisms. Basically by adding ADD_TEST() entries to the CMakeLists.txt file of the module.
Luis Ibanez' scoring system
The following scoring will be applied to the data processing sections of all modules:
| Score | Code Coverage | Valgrind Errors | Documentation | Tutorial |
|---|---|---|---|---|
| Gold | > 80% | 0 | yes | yes |
| Silver | > 70% | < 10 | yes | yes |
| Bronze | > 60% | < 50 | yes | yes |
| Clay | > 50% | < 100 | yes | yes |
| Coal | > 50% | > 100 | yes | yes |
| Hazard | unknown | unknown | no | no |
The code coverage and Valgrind error must be the ones reported on the Nightly Slicer Dashboard. Anecdotal data is not acceptable.
