CCA:Atlases:MRI Brain Atlas 2010:ColorFile
From Slicer Wiki
Home < CCA:Atlases:MRI Brain Atlas 2010:ColorFile
Back to LUT and ontologies page
Title
NAC CCA Core 2010 MRI Brain Atlas
Description
This file contains the label information for the 2010 MRI Brain Atlas from the NAC CCA Core.
Credits
- Authors
- Ion-Florin Talos MD
- Michael Halle PhD
- Institutions
- Center for Computational Anatomy Core, Neuroimage Analysis Center, Surgical Planning Lab, Brigham and Women's Hospital
- Grants
- Neuroimage Analysis Center (NAC), National Institutes of Health (NIH), National Center for Research Resources (NCRR), NIH P41 RR13218.
- Creation Date
- 02/16/2009
Imports
Lookup table information can be imported from other pages by adding links to those pages in a section like this one named "Imports".
The atlas doesn't currently import any such files.
Lookup table information
Any tables defined with class "labelpagetable" in the wiki markup will be interpreted as part of the color file description. The information in the tables are concatenated. For color file construction, the tables need to have columns named "integer_label", "text_label", and "color". These columns can appear in any order. Other columns can be included (for example, "notes").
Multiple tables can be used to organize large sets of labels for efficient viewing and editing.
The "color" column uses either CSS3-type color descriptions or raw integer values to describe the red, green, blue, and possibly alpha values of the color.
Non-anatomic entities
| integer_label | text_label | color | notes |
|---|---|---|---|
| 0 | background | rgb(0,0,0) | The background label is included here because it isn't an anatomical structure. |
Atlas lookup table
| id | integer_label | text_label | color | radlex_id | radlex_structure_id | notes |
|---|---|---|---|---|---|---|
| int2 | 2 | white matter of left cerebral hemisphere | rgb(245,245,245) | RID16998 | RID16998 | |
| int4 | 4 | left lateral ventricle | rgb(120,18,134) | RID13789 | RID13789 | |
| int5 | 5 | temporal horn of left lateral ventricle | rgb(196,58,250) | RID13803 | RID13803 | |
| int7 | 7 | white matter of left cerebellum | rgb(221,248,164) | RID17313 | RID18314 | |
| int8 | 8 | left cerebellar cortex | rgb(230,148,34) | RID15574 | RID15574 | |
| int10 | 10 | left thalamus | rgb(0,118,14) | RID13496 | RID13496 | |
| int11 | 11 | left caudate nucleus | rgb(122,186,220) | RID21020 | RID21020 | |
| int12 | 12 | left putamen | rgb(236,13,176) | RID21015 | RID21015 | |
| int13 | 13 | left globus pallidus pars externa | rgb(12,48,255) | RID18433 | RID18433 | |
| int14 | 14 | wall of third ventricle | rgb(204,182,142) | RID13826 | RID13826 | |
| int15 | 15 | fourth ventricle | rgb(42,204,164) | RID7147 | RID7147 | |
| int17 | 17 | left hippocampus | rgb(220,216,20) | RID26565 | RID26565 | |
| int18 | 18 | left amygdala | rgb(103,255,255) | RID15698 | RID15698 | |
| int24 | 24 | cavity of third ventricle | rgb(60,60,60) | RID15558 | RID15558 | |
| int25 | 25 | left globus pallidus pars interna | rgb(255,165,0) | RID18436 | RID18436 | |
| int26 | 26 | left nucleus accumbens | rgb(165,0,255) | RID21022 | RID21022 | |
| int27 | 27 | left middle cerebellar peduncle | rgb(0,255,127) | RID18080 | RID18080 | |
| int28 | 28 | left hypothalamus | rgb(165,42,42) | RID6639 | RID6639 | |
| int31 | 31 | choroid plexus of left lateral ventricle | rgb(0,200,220) | RID27793 | RID27793 | |
| int34 | 34 | left superior cerebellar peduncle | rgb(122,135,50) | RID18078 | RID18078 | |
| int35 | 35 | pons | rgb(51,50,135) | RID6728 | RID6728 | |
| int40 | 40 | midbrain | rgb(205,62,78) | RID6768 | RID6768 | |
| int41 | 41 | white matter of right cerebral hemisphere | rgb(0,225,0) | RID16997 | RID16997 | |
| int43 | 43 | right lateral ventricle | rgb(120,18,134) | RID13788 | RID13788 | |
| int44 | 44 | temporal horn of right lateral ventricle | rgb(196,58,250) | RID13802 | RID13802 | |
| int46 | 46 | white matter of cerebellum right | rgb(220,248,164) | RID17312 | RID18313 | |
| int47 | 47 | right cerebellar cortex | rgb(230,148,34) | RID15573 | RID15573 | |
| int49 | 49 | right thalamus | rgb(0,118,14) | RID13495 | RID13495 | |
| int50 | 50 | right caudate nucleus | rgb(122,186,220) | RID21019 | RID21019 | |
| int51 | 51 | right putamen | rgb(236,13,176) | RID21014 | RID21014 | |
| int52 | 52 | right globus pallidus pars externa | rgb(13,48,255) | RID18433 | RID18433 | |
| int53 | 53 | right hippocampus | rgb(220,216,20) | RID26564 | RID26564 | |
| int54 | 54 | right amygdala | rgb(103,255,255) | RID15699 | RID15699 | |
| int55 | 55 | right insula | rgb(80,196,98) | RID13870 | RID13870 | (is this label obsolete?) |
| int58 | 58 | right nucleus accumbens | rgb(255,165,0) | RID21021 | RID21021 | |
| int60 | 60 | right hypothalamus | rgb(165,42,42) | RID6639 | RID6639 | |
| int61 | 61 | medulla oblongata | rgb(135,206,235) | RID6681 | RID6681 | |
| int63 | 63 | choroid plexus of right lateral ventricle | rgb(0,200,221) | RID27792 | RID27792 | |
| int66 | 66 | left substantia nigra | rgb(122,135,50) | RID20742 | RID20742 | |
| int71 | 71 | right substantia nigra | rgb(122,135,50) | RID20741 | RID20741 | |
| int72 | 72 | pineal body | rgb(120,190,150) | RID6576 | RID6576 | |
| int78 | 78 | left optic tract | rgb(255,148,10) | RID22698 | RID22698 | |
| int79 | 79 | left red nucleus | rgb(255,148,10) | RID20702 | RID20702 | |
| int84 | 84 | right red nucleus | rgb(255,218,185) | RID20701 | RID20701 | |
| int85 | 85 | optic chiasm | rgb(234,169,30) | RID6641 | RID6641 | |
| int96 | 96 | pellucid septum | rgb(205,10,125) | RID6525 | RID6525 | |
| int100 | 100 | left mammillothalamic tract | rgb(124,140,178) | RID17563 | RID17563 | |
| int142 | 142 | anterior commissure | rgb(221,226,68) | RID6911 | RID6911 | |
| int200 | 200 | right mammillothalamic tract | rgb(0,50,128) | RID17563 | RID17563 | |
| int216 | 216 | right optic tract | rgb(255,204,102) | RID22697 | RID22697 | |
| int1000 | 1000 | left insula | rgb(125,5,25) | RID13871 | RID13871 | |
| int1001 | 1001 | left superior temporal gyrus (banks of left superior temporal sulcus) | rgb(25,100,40) | RID20309 | RID13889 | |
| int1002 | 1002 | left cingulate gyrus (fs:caudal part of left anterior cingulate gyrus) | rgb(125,100,160) | RID26841 | RID26841 | |
| int1003 | 1003 | left middle frontal gyrus (fs:posterior part) | rgb(100,25,0) | RID26835 | RID14075 | |
| int1005 | 1005 | left cuneus | rgb(220,20,100) | RID20356 | RID26552 | |
| int1006 | 1006 | left ambiens gyrus (fs:left entorhinal area) | rgb(220,20,10) | RID26595 | RID26595 | |
| int1007 | 1007 | left fusiform gyrus | rgb(180,220,140) | RID26541 | RID26541 | |
| int1008 | 1008 | left inferior parietal lobule | rgb(220,60,220) | RID27590 | RID14108 | |
| int1009 | 1009 | left inferior temporal gyrus | rgb(180,40,120) | RID20315 | RID13893 | |
| int1010 | 1010 | left cingulate gyrus (fs:isthmus) | rgb(140,20,140) | RID20384 | RID14043 | |
| int1011 | 1011 | left lateral occipital gyrus | rgb(20,30,140) | RID20353 | RID13938 | |
| int1012 | 1012 | left orbital gyri (fs:left lateral orbital gyrus) | rgb(35,75,50) | RID20293 | RID13924 | |
| int1013 | 1013 | left lingual gyrus | rgb(225,140,140) | RID20359 | RID26554 | |
| int1014 | 1014 | left straight gyrus (fs:left medial orbital gyrus) | rgb(200,35,75) | RID20290 | RID13921 | |
| int1015 | 1015 | left middle temporal gyrus | rgb(160,100,50) | RID20312 | RID13891 | |
| int1016 | 1016 | left parahippocampal gyrus | rgb(252,252,252) | RID20306 | RID13956 | |
| int1017 | 1017 | left paracentral lobule | rgb(20,220,60) | RID27593 | RID14112 | |
| int1018 | 1018 | opercular part of left inferior frontal gyrus | rgb(60,220,60) | RID22705 | RID13978 | |
| int1019 | 1019 | orbital part of left inferior frontal gyrus | rgb(220,180,140) | RID22708 | RID13981 | |
| int1020 | 1020 | triangular part of left inferior frontal gyrus | rgb(220,60,20) | RID22702 | RID13975 | |
| int1021 | 1021 | left visual cortex | rgb(120,100,60) | RID25841 | RID25841 | |
| int1022 | 1022 | left postcentral gyrus | rgb(220,20,20) | RID20334 | RID13928 | |
| int1023 | 1023 | left cingulate gyrus (fs:posterior) | rgb(220,180,220) | RID20378 | RID14049 | |
| int1024 | 1024 | left precentral gyrus | rgb(60,20,220) | RID20275 | RID13912 | |
| int1025 | 1025 | left precuneus | rgb(160,140,180) | RID20346 | RID13963 | |
| int1026 | 1026 | left cingulate gyrus (fs:rostral part of left anterior cingulate gyrus) | rgb(80,20,140) | RID26838 | RID26838 | look at structure id |
| int1027 | 1027 | left middle frontal gyrus (fs:anterior part of left middle frontal gyrus) | rgb(75,50,125) | RID26832 | RID14069 | |
| int1028 | 1028 | left superior frontal gyrus | rgb(20,220,160) | RID20269 | RID13903 | |
| int1029 | 1029 | left superior parietal lobule (cca:and precuneus) | rgb(20,180,140) | RID20346;RID20343 | RID14110;RID13963 | |
| int1030 | 1030 | left superior temporal gyrus | rgb(140,220,220) | RID20309 | RID13889 | |
| int1031 | 1031 | left angular and supramarginal gyrus (fs:just supramarginal) | rgb(80,160,20) | RID20337;RID20340 | RID13932;RID13930 | |
| int1032 | 1032 | left frontal pole | rgb(100,0,100) | RID26767 | RID20409 | |
| int1033 | 1033 | left temporal pole | rgb(70,70,70) | RID26770 | RID20416 | |
| int1034 | 1034 | left transverse temporal gyrus | rgb(150,150,200) | RID20330 | RID26543 | |
| int2000 | 2000 | right insula | rgb(125,5,125) | RID13870 | RID13870 | |
| int2001 | 2001 | right superior temporal gyrus (fs:banks of right superior temporal sulcus) | rgb(25,100,40) | RID20308 | RID13888 | |
| int2002 | 2002 | right cingulate gyrus (fs:caudal part of right anterior cingulate gyrus) | rgb(125,100,160) | RID26840 | RID26841 | |
| int2003 | 2003 | right middle frontal gyrus (fs:posterior part of right middle frontal gyrus) | rgb(100,25,0) | RID26834 | RID14074 | |
| int2005 | 2005 | right cuneus | rgb(220,20,100) | RID20355 | RID26551 | |
| int2006 | 2006 | right ambiens gyrus (fs:right entorhinal area) | rgb(220,20,100) | RID27645 | RID27645 | |
| int2007 | 2007 | right fusiform gyrus | rgb(180,220,140) | RID20317 | RID26540 | |
| int2008 | 2008 | right angular and supramarginal gyri (fs:right inferior parietal lobule) | rgb(220,60,220) | RID15673 | RID14107 | |
| int2009 | 2009 | right inferior temporal gyrus | rgb(180,40,120) | RID20314 | RID13892 | |
| int2010 | 2010 | right cingulate gyrus (fs:isthmus) | rgb(140,20,140) | RID20383 | RID14042 | |
| int2011 | 2011 | right lateral occipital gyrus | rgb(20,30,140) | RID20352 | RID13937 | |
| int2012 | 2012 | right orbital gyri (fs:right lateral orbital gyrus) | rgb(35,75,50) | RID20292 | RID13923 | |
| int2013 | 2013 | right lingual gyrus | rgb(225,140,140) | RID20358 | RID26553 | |
| int2014 | 2014 | right straight gyrus (fs:right medial orbital gyrus) | rgb(200,35,75) | RID20277 | RID13905 | |
| int2015 | 2015 | right middle temporal gyrus | rgb(160,100,50) | RID20311 | RID13890 | |
| int2017 | 2017 | right paracentral lobule | rgb(60,220,60) | RID27592 | RID14111 | |
| int2018 | 2018 | opercular part of right inferior frontal gyrus | rgb(220,180,140) | RID22704 | RID13977 | |
| int2019 | 2019 | orbital part of right inferior frontal gyrus | rgb(20,100,50) | RID22707 | RID13980 | |
| int2020 | 2020 | triangular part of right inferior frontal gyrus | rgb(220,60,20) | RID22701 | RID13974 | |
| int2021 | 2021 | right visual cortex | rgb(120,100,60) | RID25840 | RID25840 | |
| int2022 | 2022 | right postcentral gyrus | rgb(220,20,20) | RID20333 | RID13927 | |
| int2023 | 2023 | right cingulate gyrus (fs:right posterior cingulate gyrus) | rgb(220,180,220) | RID20377 | RID14048 | |
| int2024 | 2024 | right precentral gyrus | rgb(60,20,220) | RID20274 | RID13911 | |
| int2025 | 2025 | right precuneus | rgb(160,140,180) | RID20345 | RID13962 | |
| int2026 | 2026 | right cingulate gyrus (fs:rostral part of right anterior cingulate gyrus) | rgb(80,20,140) | RID26837 | RID26837 | look at structure id |
| int2027 | 2027 | right middle frontal gyrus (fs: anterior part of right middle frontal gyrus) | rgb(75,50,125) | RID26831 | RID14068 | |
| int2028 | 2028 | right superior frontal gyrus | rgb(20,220,160) | RID20268 | RID13902 | |
| int2029 | 2029 | right superior parietal lobule | rgb(20,180,140) | RID20342 | RID14109 | |
| int2030 | 2030 | right superior temporal gyrus | rgb(140,220,220) | RID20308 | RID13888 | |
| int2031 | 2031 | right supramarginal gyrus | rgb(80,160,20) | RID20336 | RID13929 | |
| int2032 | 2032 | right frontal pole | rgb(100,0,100) | RID26766 | RID20408 | |
| int2033 | 2033 | right temporal pole | rgb(70,70,70) | RID26769 | RID20415 | |
| int2034 | 2034 | right transverse temporal gyrus | rgb(150,150,200) | RID20329 | RID26542 | |
| int2108 | 2108 | right angular and supramarginal gyri | rgb(230,250,230) | RID22701 | RID13974 |
CCA additions
| id | integer_label | text_label | color | radlex_id | radlex_structure_id | notes |
|---|---|---|---|---|---|---|
| int3000 | 3000 | right claustrum | rgb(230,250,230) | RID15701 | RID15701 | |
| int3001 | 3001 | left claustrum | rgb(230,155,215) | RID15700 | RID15700 | |
| int3002 | 3002 | right mamillary body | rgb(130,155,95) | RID26776 | RID26776 | |
| int3003 | 3003 | left mamillary body | rgb(155,230,255) | RID26777 | RID26777 | |
| int3004 | 3004 | corpus callosum | rgb(135,185,205) | RID6915 | RID6915 | |
| int3005 | 3005 | right fornix of forebrain | rgb(35,235,155) | RID18106 | RID18106 | |
| int3007 | 3007 | left fornix of forebrain | rgb(75,35,115) | RID18107 | RID18107 | |
| int3008 | 3008 | infundibulum of neurohypophysis | rgb(35,195,35) | RID15529 | RID15529 | |
| int3011 | 3011 | adenohypophysis | rgb(235,225,115) | RID15522 | RID15522 | |
| int3012 | 3012 | neurohypophysis | rgb(220,180,205) | RID6645 | RID6645 |
Thalamic Nuclei Expansion
| integer_label | text_label | color | notes | radlex_id | radlex_structure_id |
|---|---|---|---|---|---|
| 500 | right internal medullary lamina | rgb(200,200,200) | RID18025 | RID18025 | |
| 501 | left internal medullary lamina | rgb(200,200,200) | RID18026 | RID18026 | |
| 502 | right medial geniculate body | rgb(125,250,21) | RID20560 | RID20560 | |
| 503 | left medial geniculate body | rgb(125,250, 21) | RID20561 | RID20561 | |
| 504 | right lateral geniculate body | rgb(102,178,255) | RID20562 | RID20562 | |
| 505 | left lateral geniculate body | rgb(102,178,255) | RID20563 | RID20563 | |
| 506 | right pulvinar | rgb(63,104,224) | RID20564 | RID20564 | |
| 507 | left pulvinar | rgb(63,104,224) | RID20565 | RID20565 | |
| 508 | right anterior thalamic nucleus | rgb(255,25,127) | in the old SPL-BrainAtlas-Colorfile.txt L and R are mislabeled (switched) | RID20544 | RID20544 |
| 509 | left anterior thalamic nucleus | rgb(255,25,127) | in the old SPL-BrainAtlas-Colorfile.txt L and R are mislabeled (switched) | RID20545 | RID20545 |
| 510 | right dorsomedial thalamic nucleus | rgb(60,189,130) | RID20535 | RID20535 | |
| 511 | left dorsomedial thalamic nucleus | rgb(60,189,130) | RID20536 | RID20536 | |
| 512 | right centromedian thalamic nucleus | rgb(188,181,105) | RID20568 | RID20568 | |
| 513 | left centromedian thalamic nucleus | rgb(188,181,105) | RID20569 | RID20569 | |
| 514 | right ventral anterior thalamic nucleus | rgb(254,213,0) | RID20929 | RID20929 | |
| 515 | left ventral anterior thalamic nucleus | rgb(254,213,0) | RID20930 | RID20930 | |
| 516 | right ventral lateral thalamic nucleus | rgb(60,180,180) | RID20931 | RID20931 | |
| 517 | left ventral lateral thalamic nucleus | rgb(60,180,180) | RID20932 | RID20932 | |
| 518 | right lateral posterior thalamic nucleus | rgb(204,127,0) | RID20927 | RID20927 | |
| 519 | left lateral posterior thalamic nucleus | rgb(204,127,0) | RID20928 | RID20928 | |
| 520 | right lateral dorsal thalamic nucleus | rgb(175,194,221) | RID20925 | RID20925 | |
| 521 | left lateral dorsal thalamic nucleus | rgb(175,194,221) | RID20926 | RID20926 | |
| 522 | right ventral posteromedial thalamic nucleus | rgb(225,167,104) | RID20506 | RID20506 | |
| 523 | left ventral posteromedial thalamic nucleus | rgb(225,167,104) | RID20507 | RID20507 | |
| 524 | right ventral posterolateral thalamic nucleus | rgb(229,127,127) | RID20504 | RID20504 | |
| 525 | left ventral posterolateral thalamic nucleus | rgb(229,127,127) | RID20505 | RID20505 |
