Home < CCA:Atlases:Florins 2010 Hierarchy

body

head

soft tissue of the head

skin of head
muscles of head
- masticatory muscles
  - right temporal muscle
  - left temporal muscle
  - right masseter muscle
  - left masseter muscle
  - right lateral pterygoid muscle
  - left lateral pterygoid muscle
  - right medial pterygoid muscle
  - left medial pterygoid muscle
- facial muscles
  - frontal muscle
  - corrugator muscle
  - right orbicularis occuli muscle
  - left orbicularis occuli muscle
  - right levator angulis oris muscle
  - left levator angulis oris muscle
  - orbicularis oris muscle
  - right risorius muscle
  - left risorius muscle
  - right nasalis muscle
  - left nasalis muscle
  - right mentalis muscle
  - left mentalis muscle
  - right depressor labii inferioris muscle
  - left depressor labii inferioris muscle
  - right depressor angulis oris muscle
  - left depressor angulis oris muscle
  - right buccinator muscle
  - left buccinator muscle
  - right occipitalis muscle
  - left occipitalis muscle
salivary glands
- right parotid glands
- left parotid glands
- right sublingual glands
- left sublingual glands
- right submandibular glands
- left submandibular glands
lips
nose
- nasal septum
- right nostril
- left nostril
tongue
soft palate
right tonsil
left tonsil
right external ear
left external ear
right middle ear
left middle ear
right internal ear
left internal ear
right eyeball
left eyeball

skull

frontal bone r/l
parietal bone r/l
temporal bone r/l
- stapes r/l
- incus r/l
- malleus r/l
sphenoid bone r/l
ethmoid bone r/l
occipital bone
maxilla
zygomatic bone r/l
lacrimal bone r/l
vomer bone
palatine bone r/l
mandible

teeth

central nervous system

meninges

dura mater
arachnoid
pia mater

brain

CSF spaces
- ventricles of brain
  - lateral ventricle r/l
  - third ventricle
  - cerebral aqueduct
  - fourth ventricle
- subarachnoid space

brain parenchyma
- gray matter of brain
  - telencephalon
    - cerebral cortex
      - frontal lobe r/l
        superior frontal gyrus r/l
        
        middle frontal gyrus r/l
        
        inferior frontal gyrus r/l
        
        orbital gyri r/l
        
        straight gyrus r/l
        
        precentral gyrus r/l
        
        paracentral lobule r/l
        
        frontal pole r/l
      - temporal lobe r/l
        superior temporal gyrus r/l
        
        middle temporal gyrus r/l
        
        inferior temporal gyrus r/l
        
        hippocampus r/l
        
        parahippocampal gyrus r/l
        
        temporal part of medial occipitotemporal gyrus r/l
        
        temporal part of lateral occipitotemporal gyrus r/l
        
        uncus r/l
      - parietal lobe r/l
        postcentral gyrus r/l
        
        superior parietal lobule r/l
        
        inferior parietal lobule r/l
        
        precuneus r/l
      - occipital lobe r/l
        superior occipital gyri r/l
        
        inferior occipital gyri r/l
        
        gyrus descendens r/l
        
        lingual gyrus r/l
        
        occipital part of medial occipitotemporal gyrus r/l
        
        occipital part of lateral occipitotemporal gyrus r/l
        
        cuneus r/l
        
        occipital pole r/l
      - insular lobe r/l
        limen of insula r/l
        
        long insular gyrus r/l
        
        short insular gyri r/l
      - limbic lobe r/l
        cingulate gyrus r/l
        
        paraterminal gyrus r/l
        
        indusium griseum r/l
        
        olfactory bulb r/l
        
        olfactory tract r/l
    - subcortical gray matter of telencephalon r/l
      - striatum r/l
        nucleus accumbens r/l
        
        caudate nucleus r/l
        
        putamen r/l
      - pallidum r/l
        globus pallidus pars externa r/l
        
        globus pallidus pars interna r/l
      - septal nuclei
      - amygdaloid complex r/l
      - claustrum r/l
  - diencephalon r/l
    - thalamus r/l
      - thalamic nuclei r/l
    - subthalamus r/l
      - subthalamic nucleus r/l
    - hypothalamus
      - hypothalamic nuclei
      - mamillary bodies r/l
      - substantia perforata r/l
        anterior substantia perforata r/l
        
        posterior substantia perforata r/l
      - pituitary infundibulum
    - epithalamus r/l
      - habenula r/l
        habenular nuclei r/l
      - pineal body
    - gray matter of mesencephalon r/l
      - red nucleus r/l
      - substantia nigra r/l
        substantia nigra pars compacta r/l
        
        substantia nigra pars reticularis r/l
      - superior colliculus r/l
      - inferior colliculus r/l
      - occulomotor nerve nucleus (CN III) r/l
      - trochlear nerve nucleus (CN IV) r/l
      - mesencephalic nucleus of the trigeminal nerve (CN V) r/l
      - periaqueductal gray matter
    - gray matter of metencephalon
      - gray matter of pons r/l
        principal sensory nucleus of trigeminal nerve (CN V) r/l
        
        motor nucleus of the trigeminal nerve (CN V) r/l
        
        abducent nerve nucleus r/l
        
        facial nerve nucleus r/l
      - cerebellar gray matter
        cerebellar cortex r/l
        
        subcortical cerebellar gray matter
        dentate nucleus r/l
        
        emboliform nucleus r/l
        
        globose nucleus r/l
        
        fastigial nucleus r/l
      - gray matter of myelencephalon (medulla oblongata)
        spinal nucleus of the trigeminal nerve (CN V) r/l
        
        cochlear nuclei (CN VIII) r/l
        
        vestibular nuclei (CN VIII) r/l
        
        superior salivatory nucleus r/l
        
        inferior salivatory nucleus r/l
        
        nucleus ambiguus r/l
        
        dorsal nucleus of vagus nerve (CN X) r/l
        
        solitary tract nucleus r/l
        
        hypoglossal nerve nucleus r/l
- cerebral white matter
  - association white matter tracts
    - U-fibers
    - superior longitudinal fasciculus r/l
    - inferior longitudinal fasciculus r/l
    - arcuate fasciculus r/l
    - uncinate fasciculus r/l
    - cingulum bundle r/l
  - projection fibers
    - corticospinal tract r/l
    - corticomesencephalic tract r/l
    - corticopontine tract r/l
    - corticobulbar tract r/l
    - optic radiation r/l
    - radiation of thalamus r/l
    - medial lemniscus r/l
    - lateral lemniscus r/l
    - superior cerebellar peduncles r/l
    - middle cerebellar peduncles r/l
    - inferior cerebellar peduncles r/l
    - optic chiasm
    - left optic tract r/l
    - right optic tract r/l
    - fornix r/l
    - mammillothalamic tract r/l
    - mamillotegmental tract r/l
    - thalamic fasciculus r/l
      - ansa lenticularis r/l
      - lenticular fasciculus r/l
  - commissural fibers
    - corpus callosum
    - anterior commissure
    - posterior commissure
- cerebellar white matter

spinal cord

gray matter of spinal cord
- anterior horn r/l
- posterior horn r/l
white matter of spinal cord
- anterior column r/l
- lateral column r/l
- posterior column r/l

endocrine system of brain

pituitary gland
- adenohypophysis
- neurohypophysis

neck

soft tissue of neck

skin of neck

muscles of neck

pharynx

larynx

thyroid cartilage
cricoid cartilage
epiglottic cartilage
arytenoid cartilages r/l
vocal cords r/l

thyroid gland

====parathyroid glands==== r/l

skeleton of neck

hyoid bone
cervical vertebral column
- cervical vertebrae
  - first cervical vertebra
  - second cervical vertebra
  - third cervical vertebra
  - fourth cervical vertebra
  - fifth cervical vertebra
  - sixth cervical vertebra
  - seventh cervical vertebra

thorax

soft tissue of thorax

soft tissue of thoracic wall

Skin of thoracic wall

muscles of thoracic wall

contents of thoracic cavity

trachea

bronchi

main bronchus r/l

right lung

superior lobe of right lung
middle lobe of right lung
inferior lobe of right lung

left lung

superior lobe of left lung
inferior lobe of left lung

pleura

parietal pleura
visceral pleura
pleural cavity

heart

atrium r/l
atrial septum
ventricular septum
right ventricle of heart
- papillary muscles of right ventricle of heart
- chordae tendineae of right ventricle of heart
left ventricle of heart
- papillary muscles of left ventricle of heart
- chordae tendineae of left ventricle of heart
mitral valve
tricuspid valve
aortic valve
pulmonary valve

pericardium

pericardial cavity

esophagus

thymus

mediastinum

skeleton of thorax

thoracic vertebral column
- thoracic vertebrae
  - first thoracic vertebra
  - second thoracic vertebra
  - third thoracic vertebra
  - fourth thoracic vertebra
  - fifth thoracic vertebra
  - sixth thoracic vertebra
  - seventh thoracic vertebra
  - eighth thoracic vertebra
  - ninth thoracic vertebra
  - tenth thoracic vertebra
  - eleventh thoracic vertebra
  - twelfth thoracic vertebra
ribs
- first rib r/l
- second rib r/l
- third rib r/l
- fourth rib r/l
- fifth rib r/l
- sixth rib r/l
- seventh rib r/l
- eighth rib r/l
- ninth rib r/l
- tenth rib r/l
- eleventh rib r/l
- twelfth rib r/l
sternum
- manubrium
- body of sternum
- xyphoid process
clavicle r/l

abdomen

soft tissue of abdomen

soft tissue of abdominal wall

skin of abdominal wall

muscles of abdominal wall

contents of abdominal cavity

peritoneum
- parietal peritoneum
- visceral peritoneum
- omentum
- peritoneal cavity
  - bursa omentalis
  - rectouterine pouch
- falciform ligament
- mesentery
- mesocolon
  - transverse mesocolon
  - sigmoid mesocolon
- broad ligament of uterus
  - mesometrium
  - mesosalpinx
  - mesovarium
retroperitoneal space
stomach
- cardia
- fundus of stomach
- body of stomach
- pylorus
duodenum
- duodenal ampulla
small bowel
- jejunum
- ileum
colon
- cecum
  - ileocecal valve
  - appendix
- ascending colon
- transverse colon
- sigmoid colon
- rectum
- anus
liver
- capsule of liver
- right lobe of liver
- left lobe of liver
- caudate lobe of liver
- quadrate lobe of liver
- ligamentum teres of liver
biliary tree
- hepatic duct r/l
- common hepatic duct
- common bile duct
- cystic duct
- gallbladder
pancreas
- head of pancreas
- body of pancreas
- tail of pancreas
- pancreatic duct
- islets of Langerhans
spleen
urinary system
- right kidney
  - parenchyma of right kidney
    - cortex of right kidney
    - medulla of right kidney
- right renal pelvis
- left kidney
  - parenchyma of left kidney
    - cortex of left kidney
    - medulla of left kidney
- left renal pelvis
- right ureter
- left ureter
- urinary bladder
- urethra
suprarenal glands
- corticosuprarenal glands
- medullosuprarenal glands
female internal genitalia
- uterus
  - fundus of uterus
  - body of uterus
  - cervix
  - round ligament r/l
  - uterosacral ligament r/l
  - pubocervical ligament
- fallopian tubes r/l**ovaries
- vagina
male internal genitalia
- prostate
- seminal vesicle r/l
- deferent ducts r/l

skeleton of abdomen

vertebral column of abdomen

lumbar vertebral column

lumbar vertebrae
- first lumbar vertebra
- second lumbar vertebra
- third lumbar vertebra
- fourth lumbar vertebra
- fifth lumbar vertebra

sacrum

coccyx

female external genitalia

vulva

vulval vestibule
hymen
major labia r/l
minor labia r/l
praeputium
clitoris
- glans of clitoris
- body of clitoris
  - corpus cavernosum of clitoris
- prepuce of clitoris
Bartolin's glands r/l

male external genitalia

penis

glans of penis
- meatus
shaft
- corpus cavernosum of penis
- spongious body
prepuce of penis

scrotum

skin of scrotum
dartos layer
cremaster muscle r/l
testicle r/l
- epididymis r/l
- spermatic cord r/l

upper limb

===shoulder=== r/l ====soft tissue of shoulder==== r/l

skin of shoulder r/l
muscles and tendons of shoulder r/l
- muscles of shoulder r/l
- tendons of shoulder r/l

====skeleton of shoulder==== r/l

scapula r/l

===arm=== r/l ====soft tissue of arm==== r/l

skin of arm r/l
muscles and tendons of arm r/l
- muscles of arm r/l
- tendons of arm r/l

====skeleton of arm==== r/l

humerus r/l

===elbow=== r/l ====soft tissue of elbow==== r/l

skin of elbow r/l
muscles and tendons of elbow r/l
- muscles of elbow r/l
- tendons of elbow r/l

====skeleton of elbow==== r/l

elbow joint r/l

===forearm=== r/l ====soft tissue of forearm==== r/l

skin of forearm r/l
muscles and tendons of forearm r/l
- muscles of forearm r/l
- tendons of forearm r/l

====skeleton of forearm==== r/l

radius r/l
ulna r/l

===hand=== r/l

====soft tissue of hand==== r/l

skin of hand r/l
muscles and tendons of hand r/l
- muscles of hand r/l
- tendons of hand r/l

====skeleton of hand==== r/l

wrist r/l
- scaphoid r/l
- lunate r/l
- triquetrum r/l
- pisiform r/l
- trapezium r/l
- trapezoid r/l
- capitate r/l
- hamate r/l
metacarpus r/l
- metacarpal bones r/l
  - right first metacarpal bone r/l
  - right second metacarpal bone r/l
  - right third metacarpal bone r/l
  - right fourth metacarpal bone r/l
  - right fifth metacarpal bone r/l
  - left first metacarpal bone r/l
  - left second metacarpal bone r/l
  - left third metacarpal bone r/l
  - left fourth metacarpal bone r/l
  - left fifth metacarpal bone r/l
phalanges of hand r/l

==lower limb== r/l ===hip=== r/l ====soft tissue of hip==== r/l

skin of hip r/l
muscles and tendons of hip r/l
- muscles of hip r/l
- tendons of hip r/l

====skeleton of hip==== r/l

hip joint r/l
hip bone r/l
- ischium r/l
- ilium r/l
- pubis r/l

===thigh=== r/l ====soft tissue of thigh==== r/l

skin of thigh r/l
muscles and tendons of thigh r/l
- muscles of thigh r/l
- tendons of thigh r/l

====skeleton of thigh==== r/l

femur r/l

===knee=== r/l ====soft tissue of knee==== r/l

skin of knee r/l
muscles and tendons of knee r/l
- muscles of knee r/l
- tendons of knee r/l

====skeleton of knee==== r/l

knee joint r/l

===leg=== r/l ====soft tissue of leg==== r/l

skin of leg r/l
muscles and tendons of leg r/l
- muscles of leg r/l
- tendons of leg r/l

====skeleton of leg ==== r/l

tibia r/l
fibula r/l

===foot=== r/l

====soft tissue of foot==== r/l

skin of foot r/l
muscles and tendons of foot r/l
- muscles of foot r/l
- tendons of foot r/l

====skeleton of foot==== r/l

ankle r/l
- talus r/l
- calcaneus r/l
- navicular r/l
- first cuneiform r/l
- second cuneiform r/l
- third cuneiform r/l
- cuboid r/l
metatarsus r/l
- metatarsal bones r/l
  - first metatarsal bone r/l
  - second metatarsal bone r/l
  - third metatarsal bone r/l
  - fourth metatarsal bone r/l
  - fifth metatarsal bone r/l
phalanges of foot r/l

peripheral nervous system

cranial nerves

right olfactory nerve (CN I)
right optic nerve (CN II)
right oculomotor nerve (CN III)
right trochlear nerve (CN IV)
right trigeminal nerve (CN V)
right abducent nerve (CN VI)
right facial nerve (CN VII)
right intermediate nerve (CN VII b)
right vestibulocochlear nerve (CN VIII)
right glossopharyngeal nerve (CN IX)
right vagal nerve (CN X)
right accessory nerve (CN XI)
right hypoglossal nerve (CN XII)
left olfactory nerve (CN I)
left optic nerve (CN II)
left oculomotor nerve (CN III)
left trochlear nerve (CN IV)
left trigeminal nerve (CN V)
left abducent nerve (CN VI)
left facial nerve (CN VII)
left intermediate nerve (CN VII b)
left vestibulocochlear nerve (CN VIII)
left glossopharyngeal nerve (CN IX)
left vagal nerve (CN X)
left accessory nerve (CN XI)
left hypoglossal nerve (CN XII)

spinal nerves

nerve plexuses and intercostal nerves

cervical plexus r/l
- lesser occipital nerve r/l
- greater auricular nerve r/l
- transverse cervical nerve r/l
- supraclavicular nerve r/l
- ansa cervicalis r/l
- phrenic nerve r/l
- segmental nerve branches
  - right first cervical nerve
  - right second cervical nerve
  - right third cervical nerve
  - right fourth cervical nerve
  - left first cervical nerve
  - left second cervical nerve
  - left third cervical nerve
  - left fourth cervical nerve
brachial plexus r/l
- dorsal scapular nerve r/l
- suprascapular nerve r/l
- nerve to subclavius r/l
- lateral pectoral nerve r/l
- musculocutaneus nerve r/l
- axillary nerve r/l
- median nerve r/l
- ulnar nerve r/l
- radial nerve r/l
- lower subscapular nerve r/l
- thoracodorsal nerve r/l
- medial pectoral nerve r/l
- upper subscapular nerve r/l
- long thoracic nerve r/l
intercostal nerves
- right first intercostal nerve
- right second intercostal nerve
- right third intercostal nerve
- right fourth intercostal nerve
- right fifth intercostal nerve
- right sixth intercostal nerve
- right seventh intercostal nerve
- right eighth intercostal nerve
- right ninth intercostal nerve
- right tenth intercostal nerve
- right eleventh intercostal nerve
- left first intercostal nerve
- left second intercostal nerve
- left third intercostal nerve
- left fourth intercostal nerve
- left fifth intercostal nerve
- left sixth intercostal nerve
- left seventh intercostal nerve
- left eighth intercostal nerve
- left ninth intercostal nerve
- left tenth intercostal nerve
- left eleventh intercostal nerve
lumbosacral plexus
- iliohypogastric nerve r/l
- ilioinguinal nerve r/l
- genitofemoral nerve r/l
- lateral cutaneous femoral nerve r/l
- femoral nerve r/l
- obturator nerve r/l
- accessory obturator nerve r/l
- sciatic nerve r/l
  - common fibular nerve r/l
  - tibial nerve r/l
- pudendal nerve r/l
- anococcigeal nerves r/l

circulatory system

systemic arterial system

aorta
- right coronary artery
- left coronary artery
- aortic arch
  - right brachiocephalic trunk
    - right subclavian artery
      - right vertebral artery
        anterior spinal artery
        
        posterior inferior cerebellar artery
        
        basilar artery
        anterior inferior cerebellar artery
        
        pontine arteries
        
        superior cerebellar artery
        
        posterior cerebellar artery
      - internal thoracic artery
      - thyrocervical trunk
      - costocervical trunk
      - dorsal scapular artery
      - axillary artery
        brachial artery
    - right common carotid artery
      - right external carotid artery
      - right internal carotid artery
        right opthalmic artery
        
        right anterior cerebral artery
        anterior communicating artery
      - right middle cerebral artery
      - right posterior communicating artery
  - left common carotid artery
    - left external carotid artery
    - left internal carotid artery
      - see right internal carotid artery
  - left subclavian artery
    - see right subclavian artery
- descending thoracic aorta
  - bronchial arteries
  - esophageal arteries
  - posterior intercostal arteries r/l
- abdominal aorta
  - inferior phrenic artery
  - celiac trunk
  - superior mesenteric artery
  - middle suprarenal artery
  - renal artery r/l
  - gonadal artery r/l
  - lumbar artery r/l
  - inferior mesenteric artery
  - median sacral artery
  - right common iliac artery
    - right external iliac artery
      - inferior epigastric artery
      - deep circumflex iliac artery
      - femoral artery
    - right internal iliac artery
      - right iliolumbar artery
      - right lateral sacral arteries
      - right superior gluteal artery
      - right obturator artery
      - right inferior gluteal artery
      - right umbilical artery
      - right uterine/deferential artery
      - right inferior vesical artery
      - right middle rectal artery
      - right internal pudendal artery
  - left common iliac artery
    - left external iliac artery
    - left internal iliac artery

systemic venous system

superior vena cava
inferior vena cava
azygos vein
hemyazygos vein
portal vein

pulmonary arterial system

right pulmonary artery
left pulmonary artery

pulmonary venous system

right superior pulmonary vein
right inferior pulmonary vein
left superior pulmonary vein
left inferior pulmonary vein

lymphatic system

lymphatic ducts

right lymphatic duct
thoracic duct

lymph node groups

cervical lymph nodes
supraclavicular lymph nodes
occipital lymph nodes
pre-auricular lymph nodes
infraclavicular lymph nodes
axillary lymph nodes
pectoral lymph nodes
epitrochlear/brachial lymph nodes
mediastinal lymph nodes
mesenteric lymph nodes
para-aortal lymph nodes
iliac lymph nodes
inguinal lymph nodes
femoral lymph nodes
popliteal lymph nodes

material

air
liquid

biological material

blood
cerebro-spinal fluid
urine
feces

tissue

gray matter
white matter
bone
cartilage
fat
connective tissue

pathology

tumor
edema
bleeding
necrosis
clot
embolism

foreign objects

surgical needle
probe

segmentation regions

background
unsegmented region
user defined regions
- region 1
- region 2
- region 3
- region 4
- region 5
- region 6
- region 7
- region 8
- region 9
- region 10
- region 12
- region 13
- region 14
- region 15
- region 16

CCA:Atlases:Florins 2010 Hierarchy

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