Documentation/3.4

Introduction

Integrating with Slicer3

This page is a portal for documentation about Slicer 3.4. For information for software developers, please go to the Developers page (see link in navigation box to the left).

How-To Tutorials

Slicer3 tutorial page

Feature Request and Problem Reports

We have an issues tracker for Slicer 3. You need to create an account for filing reports. We keep track of both feature requests and bug reports. Make sure to use the pull-down in the upper right to select Slicer 3.

List of Modules in need of documentation

Main GUI

• Main Application GUI
• List of Hotkeys and Keyboard Shortcuts
• How to load data
• Save Scene and Data Module

Modules

Please copy the template linked below, paste it into your page and customize it with your module's information. Slicer3:Module_Documentation-3.4_Template

Core and Loadable Modules

• Data Module
• Volumes Module
• DTMRI Infrastructure
• Diffusion Editor
• Models Module
• Modelmaker
• Transforms Module
• Fiducials Module
• Volume Rendering Module
• Interactive Editor
• Query Atlas
• EM Segementer
• ChangeTracker

CLI Modules

• Registration: the top two have been somewhat tested by Ron on T1 weighted MR images and work pretty fast
• Affine Registration
• Deformable BSpline Registration
• The following are somewhat undocumented and or experimental
  • Otsu Thresholding
  • Gyri Contour Segmentation
  • Resample Volume 2
  • Stochastic Tractography
  • Linear Registration (aka rigid registration)
  • Voting Binary Hole Filling
  • (UTAH)Deformable BSpline Registration
  • Level-Set Segmentation Framework
    • Region Selector
    • Target Preprocessing
    • Bubble Maker
    • Level-Set Label Map Evolver
  • Binary Morphological Operations
    • BinaryThresholding
    • LabelBinaryImages
    • BinaryErodeOperations
    • BinaryDilateOperations
  • Fuzzy Surface Creation

Modules on NITRC

Slicer on NITRC

We are using NITRC as a repository for contributed modules. As a general rule, we do not test them ourselves, it is the downloaders job to ensure that they do what they want them to do.

Click here to see a listing of Slicer 3 modules on NITRC.

This is how to get modules from NITRC into Slicer 3.4